RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8956
(333 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 75.8 bits (185), Expect = 5e-17
Identities = 34/179 (18%), Positives = 69/179 (38%), Gaps = 16/179 (8%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIE 190
K+F+ L +E L+SHF ++G + + ++RD N +S+GFGF+ + + + + A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNKIFVANLPSNINNSEFEELFA 250
++ + V + KIFV + + + F
Sbjct: 68 RPHKVDGRVVEPK--------RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE 119
Query: 251 RFGTITSSSLVSDKHIG------FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
++G I +++D+ G F+ F V H +V + +K
Sbjct: 120 QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQ 177
Score = 74.3 bits (181), Expect = 2e-16
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 9/173 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
L + L +++L + F+++GTL D V R+ N SRGF + + T E A
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFG 155
+ G K + K+FV + E +E L+ +F ++G
Sbjct: 69 PHKVDGRVVEP------KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG 122
Query: 156 NIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
I ++I+ D +GK +GF F+ F + + +K + + ++ V A
Sbjct: 123 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKI-VIQKYHTVNGHNCEVRKAL 174
Score = 37.3 bits (85), Expect = 9e-04
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHAT 278
P + K+F+ L + F ++GT+T ++ D + F+ + +
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 62
Query: 279 HAVSTMNGH 287
A++
Sbjct: 63 AAMNARPHK 71
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 63.8 bits (155), Expect = 8e-14
Identities = 19/75 (25%), Positives = 35/75 (46%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+ V NL V + +++ F +FG + + + D +G+S G + F A KA+ +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 192 NGRMIQHNSTFVSLA 206
NG + + L
Sbjct: 62 NGVPLDGRPMNIQLV 76
Score = 59.2 bits (143), Expect = 3e-12
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLV-----SDKHIGFIEFIMPKHATHAVSTM 284
K+ V+NL +++++ +ELFA FGT+ +++ + F A A+
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 285 NGHVFKSKPLKVTLS 299
NG +P+ + L
Sbjct: 62 NGVPLDGRPMNIQLV 76
Score = 56.5 bits (136), Expect = 3e-11
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L V+NL+ V + + F +FGTL+ V +++ S G A + F A+A KA + N
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 97 GHLIGSKPVIITFV 110
G + +P+ I V
Sbjct: 63 GVPLDGRPMNIQLV 76
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 63.8 bits (155), Expect = 1e-13
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 126 KQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN--GKSKGFGFIQFFSYKA 183
K+ K+ V+N+ ++ E++ F FG + V++ + G +GFGF+ F + +
Sbjct: 4 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 63
Query: 184 AEKAIIEM-NGRMIQHNSTFVSLAE 207
A+KA + + + + A+
Sbjct: 64 AKKAFNALCHSTHLYGRRLVLEWAD 88
Score = 54.6 bits (131), Expect = 2e-10
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI-------GFIEFIMPKHATH 279
+KI V N+P N E ELF+ FG + + L GF++FI + A
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 280 AVSTM-NGHVFKSKPLKVTLSGTKP 303
A + + + + L + + ++
Sbjct: 67 AFNALCHSTHLYGRRLVLEWADSEV 91
Score = 51.1 bits (122), Expect = 4e-09
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND--ESRGFAIIVFNTPAEAKK 90
+++ V N+ + + + F FG L+ VR+ + RGF + F T +AKK
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 91 ARVEM-NGHLIGSKPVIITFVELKP 114
A + + + + +++ + + +
Sbjct: 67 AFNALCHSTHLYGRRLVLEWADSEV 91
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 63.0 bits (153), Expect = 1e-13
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAIIE 190
++V +L V E L F G I+ +++ R +S G+ ++ F AE+A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 191 MNGRMIQHNSTFVSLAE 207
MN +I+ + ++
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
Score = 58.0 bits (140), Expect = 1e-11
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVST 283
++V +L ++ + E F+ G I S + D ++ F P A A+ T
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 284 MNGHVFKSKPLKVTLS 299
MN V K KP+++ S
Sbjct: 62 MNFDVIKGKPVRIMWS 77
Score = 56.9 bits (137), Expect = 2e-11
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
L+V +L P V L +F G + +RV R+ S G+A + F PA+A++A M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 96 NGHLIGSKPVIITF 109
N +I KPV I +
Sbjct: 63 NFDVIKGKPVRIMW 76
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 62.3 bits (151), Expect = 4e-13
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
++++FV NLP +I E +LF ++G + DK GFI A A ++
Sbjct: 8 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM 67
Query: 288 VFKSKPLKVTLSGTKPGVS 306
+ K L+V + ++
Sbjct: 68 PLRGKQLRVRFACHSASLT 86
Score = 57.7 bits (139), Expect = 2e-11
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
E+ ++ ++FV NL + EEE++ F K+G EV I +D+ FGFI+ +
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG-----FGFIRLETRTL 56
Query: 184 AEKAIIEMNGRMIQHNSTFVSLA 206
AE A +E++ ++ V A
Sbjct: 57 AEIAKVELDNMPLRGKQLRVRFA 79
Score = 48.4 bits (115), Expect = 2e-08
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
G ++ + ++++ V NL P + + + F+K+G +V + ++K F I
Sbjct: 1 GEKTFTQRSRLF------VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG-----FGFI 49
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITF 109
T A+ A+VE++ + K + + F
Sbjct: 50 RLETRTLAEIAKVELDNMPLRGKQLRVRF 78
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 61.4 bits (149), Expect = 8e-13
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 122 GPEEKQYKKDKVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFS 180
G + + +VF+ NL V + ++++ F K+G I+ + + GF F+Q+ +
Sbjct: 7 GKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK-------GFAFVQYVN 59
Query: 181 YKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ A A+ +GRMI ++LA
Sbjct: 60 ERNARAAVAGEDGRMIAGQVLDINLAA 86
Score = 57.6 bits (139), Expect = 2e-11
Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 229 NKIFVANL-PSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
+++F+ NL + S+ E +F+++G I S+ K F++++ ++A AV+ +G
Sbjct: 16 SRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--HKGFAFVQYVNERNARAAVAGEDGR 73
Query: 288 VFKSKPLKVTLSGTKP 303
+ + L + L+
Sbjct: 74 MIAGQVLDINLAAEPK 89
Score = 56.4 bits (136), Expect = 5e-11
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 24 SNKENNKVYKENELHVNNLEP-SVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
S+ + + + + + NL V + F K+G + V +GFA + +
Sbjct: 5 SSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV-------HKGFAFVQY 57
Query: 83 NTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKP 120
A+ A +G +I + + I RS P
Sbjct: 58 VNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRSGP 95
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 60.8 bits (147), Expect = 1e-12
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIE-VKIVRDENGKSKGFGFIQFFS 180
G + + V+N+ TV +E+ F + I V + +E G G + F S
Sbjct: 1 GASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFES 60
Query: 181 YKAAEKAIIEMNGRMIQHNSTFVSLA 206
A A+I++N R I + L
Sbjct: 61 RDEATAAVIDLNDRPIGSRKVKLVLG 86
Score = 47.7 bits (113), Expect = 4e-08
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAV 281
I V N+P ++ E + F + I S + + F AT AV
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 68
Query: 282 STMNGHVFKSKPLKVTL 298
+N S+ +K+ L
Sbjct: 69 IDLNDRPIGSRKVKLVL 85
Score = 46.2 bits (109), Expect = 2e-07
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRD-VRVARNKNDESRGFAI 79
GA S K + + V N+ +V +++ F + + V + N+ G A+
Sbjct: 1 GASSGKPGPTI-----IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAM 55
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
+ F + EA A +++N IGS+ V +
Sbjct: 56 VAFESRDEATAAVIDLNDRPIGSRKVKLVL 85
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 60.0 bits (145), Expect = 2e-12
Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 127 QYKKDKVFVKNLVETVDEEELKSHFIKFGNII-EVKIVRDENGKSKGFGFIQFFSYKAAE 185
K ++V NL T+ +++L + F K+G+I+ + + G+ +G F+++ + A+
Sbjct: 3 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 62
Query: 186 KAIIEMNGRMIQ 197
+AI +N + +
Sbjct: 63 EAISALNNVIPE 74
Score = 53.8 bits (129), Expect = 3e-10
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHA 280
+ ++V NLP I + + + +F ++G+I +++ D + + F+ + + A A
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 281 VSTMNGHVFK--SKPLKV 296
+S +N + + S+PL V
Sbjct: 65 ISALNNVIPEGGSQPLSV 82
Score = 50.3 bits (120), Expect = 6e-09
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKA 91
K+ L+V NL ++ + L F K+G++ + R+ RG A + +N EA++A
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 92 RVEMNGHLI--GSKPVIITF 109
+N + GS+P+ +
Sbjct: 65 ISALNNVIPEGGSQPLSVRL 84
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 60.8 bits (147), Expect = 2e-12
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++ V+NL V + L F KFG ++++ ++ +Q+ +A+ A + +
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSL 65
Query: 192 NGRMIQHNS 200
+G+ I +
Sbjct: 66 DGQNIYNAC 74
Score = 49.2 bits (117), Expect = 2e-08
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH--IGFIEFIMPKHATHAVS 282
+ +I V NL + ++F++FGT+ + + +++ P A HA
Sbjct: 4 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 63
Query: 283 TMNGHVFKSKPLKVTLSGTKP 303
+++G + + + +K
Sbjct: 64 SLDGQNIYNACCTLRIDFSKL 84
Score = 46.2 bits (109), Expect = 3e-07
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL V L F KFGT+ + ++ A++ + P A+ A++ ++
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLD 66
Query: 97 GHLI--GSKPVIITFVELKPGQRSK 119
G I + I F +L
Sbjct: 67 GQNIYNACCTLRIDFSKLTSLNVKY 91
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 60.4 bits (146), Expect = 2e-12
Identities = 16/88 (18%), Positives = 34/88 (38%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177
+ + + V ++ + EE K+G + E+ + + G +++
Sbjct: 15 NSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVK 74
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSL 205
F + AEKA+I++N R L
Sbjct: 75 FRREEDAEKAVIDLNNRWFNGQPIHAEL 102
Score = 49.3 bits (117), Expect = 2e-08
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAVST 283
+ + + F E+ ++G + ++ + +++F + A AV
Sbjct: 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID 87
Query: 284 MNGHVFKSKPLKVTLS 299
+N F +P+ LS
Sbjct: 88 LNNRWFNGQPIHAELS 103
Score = 48.1 bits (114), Expect = 5e-08
Identities = 12/75 (16%), Positives = 30/75 (40%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
+++ + + +K+G + ++ V N D G + F +A+KA ++
Sbjct: 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID 87
Query: 95 MNGHLIGSKPVIITF 109
+N +P+
Sbjct: 88 LNNRWFNGQPIHAEL 102
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 60.0 bits (145), Expect = 3e-12
Identities = 15/79 (18%), Positives = 32/79 (40%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM 284
+ ++ + S + + + F+ FG I + +K F+ F + A HA+ ++
Sbjct: 15 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSV 74
Query: 285 NGHVFKSKPLKVTLSGTKP 303
NG + +K P
Sbjct: 75 NGTTIEGHVVKCYWGKESP 93
Score = 57.3 bits (138), Expect = 2e-11
Identities = 14/76 (18%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
V+ + + ++ ++ F FG I+E+++ ++ + F++F ++++A AI+ +
Sbjct: 20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSV 74
Query: 192 NGRMIQHNSTFVSLAE 207
NG I+ + +
Sbjct: 75 NGTTIEGHVVKCYWGK 90
Score = 51.1 bits (122), Expect = 4e-09
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 18 DDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGF 77
+D +S+ +N VY + + +Q + F FG + ++RV K +
Sbjct: 8 EDVVNQSSPKNCTVY------CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG-----Y 56
Query: 78 AIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114
+ + F+T A A V +NG I V + + P
Sbjct: 57 SFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 93
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 58.9 bits (142), Expect = 5e-12
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHATHAV 281
+ V LP ++ + E LF G I + ++ D G F++F + A+
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 282 STMNGHVFKSKPLKVTLSGTKPG 304
+NG ++K LKV+ + +PG
Sbjct: 62 KVLNGITVRNKRLKVSYA--RPG 82
Score = 58.1 bits (140), Expect = 8e-12
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAIIE 190
+ V L + + + EL + F G I +I+RD G S G+ F+ F S +++AI
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 191 MNGRMIQHNSTFVSLAEIVPG 211
+NG +++ VS A PG
Sbjct: 64 LNGITVRNKRLKVSYAR--PG 82
Score = 51.9 bits (124), Expect = 2e-09
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVR-VARNKNDESRGFAIIVFNTPAEAKKARVEM 95
L VN L + ++ L F+ G + R + K S G+A + F + ++++A +
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 96 NGHLIGSKPVIITFVELKPG 115
NG + +K + +++ +PG
Sbjct: 65 NGITVRNKRLKVSYA--RPG 82
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 57.7 bits (139), Expect = 1e-11
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKI-VRDENGKSKGFGFIQFFS 180
GP ++ + V+V L E V E L F++ G ++ + G+ +G+GF++F S
Sbjct: 1 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 181 YKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ A+ AI M+ + V+ A
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNKAS 87
Score = 53.1 bits (127), Expect = 7e-10
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMP 274
P+ + + ++V L ++ ELF + G + ++ + D + GF+EF+
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 61
Query: 275 KHATHAVSTMNGHVFKSKPLKV 296
+ A +A+ M+ KP++V
Sbjct: 62 EDADYAIKIMDMIKLYGKPIRV 83
Score = 46.9 bits (111), Expect = 9e-08
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKA 91
++ ++V L+ V L F + G + + + ++ + +G+ + F + +A A
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 67
Query: 92 RVEMNGHLIGSKPVIITF 109
M+ + KP+ +
Sbjct: 68 IKIMDMIKLYGKPIRVNK 85
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 56.9 bits (137), Expect = 2e-11
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAI-- 188
K+F+ L +E L+ +F +FG + E ++RD +S+GFGF+ F +K +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 189 --IEMNGRMI 196
E++ + I
Sbjct: 62 SRHELDSKTI 71
Score = 49.2 bits (117), Expect = 1e-08
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVST 283
K+F+ L E F +FG + ++ D F+ F+ ++
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA- 60
Query: 284 MNGHVFKSKPLKV 296
+ H SK +
Sbjct: 61 QSRHELDSKTIDP 73
Score = 48.4 bits (115), Expect = 2e-08
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
+ + L + L F +FG +++ V R+ SRGF + F A K +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV-LAQ 61
Query: 96 NGHLIGSKPV 105
+ H + SK +
Sbjct: 62 SRHELDSKTI 71
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 57.3 bits (138), Expect = 2e-11
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 134 FVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN----GKSKGFGFIQFFSYKAAEKAII 189
F+KNL + EE LK F K G I I + +N S GFGF+++ + A+KA+
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 190 EMNGRMIQHNSTFVSLAE 207
++ G + + V ++E
Sbjct: 62 QLQGHTVDGHKLEVRISE 79
Score = 55.8 bits (134), Expect = 7e-11
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSD---------KHIGFIEFIMPKHATHAV 281
+F+ NL + + +F++ G I S ++ GF+E+ P+ A A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 282 STMNGHVFKSKPLKVTLS--GTKP 303
+ GH L+V +S TKP
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKP 84
Score = 53.5 bits (128), Expect = 4e-10
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDES----RGFAIIVFNTPAEAKKAR 92
L + NL S + L F K G ++ +++ KN GF + + P +A+KA
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRSKP 120
++ GH + + + E + +KP
Sbjct: 61 KQLQGHTVDGHKLEVRISE----RATKP 84
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 56.9 bits (137), Expect = 3e-11
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190
K+F+ L ++++++K FG + +V+D G SKG+ F ++ ++AI
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 191 MNGRMIQHNSTFVSLAEIVPGKK 213
+NG + V A G K
Sbjct: 63 LNGMQLGDKKLLVQRAS--VGAK 83
Score = 51.2 bits (122), Expect = 3e-09
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVS 282
+K+F+ LP+ +N+ + +EL FG + + +LV D K F E++ A++
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 283 TMNGHVFKSKPLKVTLSGTKP 303
+NG K L V +
Sbjct: 62 GLNGMQLGDKKLLVQRASVGA 82
Score = 48.5 bits (115), Expect = 2e-08
Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L + L +++ + FG L+ + ++ S+G+A + +A +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 96 NGHLIGSKPVIITFVELKPGQ 116
NG +G K +++ +
Sbjct: 64 NGMQLGDKKLLVQRASVGAKN 84
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 56.3 bits (135), Expect = 4e-11
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIV--RDENGKSKGFGFIQFFSYKAAEKAIIE 190
+F+ NL +DE+ L F FG I++ + + G SKG+ FI F S+ A++ AI
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 191 MNGRMIQHNSTFVSLAE 207
MNG+ + + VS A
Sbjct: 61 MNGQYLCNRPITVSYAF 77
Score = 50.9 bits (121), Expect = 3e-09
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH-------IGFIEFIMPKHATHAVST 283
IF+ NL I+ + F+ FG I + + FI F + A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 284 MNGHVFKSKPLKVTLSGTKP 303
MNG ++P+ V+ + K
Sbjct: 61 MNGQYLCNRPITVSYAFKKD 80
Score = 45.1 bits (106), Expect = 4e-07
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVA--RNKNDESRGFAIIVFNTPAEAKKARVE 94
+ + NL+P +D + L + F FG + S+G+A I F + + A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 95 MNGHLIGSKPVIITFVELKP 114
MNG + ++P+ +++ K
Sbjct: 61 MNGQYLCNRPITVSYAFKKD 80
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 57.3 bits (138), Expect = 4e-11
Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++++NL + EE+ F K+G I + I +++G ++ + A+ A +
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYGPIRQ--IRVGNTPETRGTAYVVYEDIFDAKNACDHL 66
Query: 192 NGRMIQHNSTFVSLAE 207
+G + + V
Sbjct: 67 SGFNVCNRYLVVLYYN 82
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATH 279
L P +++ NLP I E ++F ++G I + + + ++ + A +
Sbjct: 2 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKN 61
Query: 280 AVSTMNGHVFKSKPLKVTLSGTKP 303
A ++G ++ L V
Sbjct: 62 ACDHLSGFNVCNRYLVVLYYNANR 85
Score = 54.3 bits (130), Expect = 4e-10
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L++ NL + + + + F K+G +R +RV RG A +V+ +AK A ++
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET--RGTAYVVYEDIFDAKNACDHLS 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKK 130
G + ++ +++ + + +E+Q K
Sbjct: 68 GFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKL 101
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 56.5 bits (136), Expect = 4e-11
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 125 EKQYKK-DKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYK 182
EK KK ++V NL EE++ F K G+I ++ + D + GF F++++S
Sbjct: 1 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA 60
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLA 206
AE A+ +NG +
Sbjct: 61 DAENAMRYINGTRLDDRIIRTDWD 84
Score = 56.1 bits (135), Expect = 6e-11
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHAVS 282
++V NL + ELF++ G I + DK F+E+ A +A+
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
Query: 283 TMNGHVFKSKPLKVTLS-GTKPG 304
+NG + ++ G K G
Sbjct: 68 YINGTRLDDRIIRTDWDAGFKEG 90
Score = 48.4 bits (115), Expect = 3e-08
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 26 KENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNT 84
K++ +Y V NL + + F K G ++ + + +K + GF + + +
Sbjct: 5 KKSCTLY------VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYS 58
Query: 85 PAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGPEEKQY 128
A+A+ A +NG + + + + G + E +QY
Sbjct: 59 RADAENAMRYINGTRLDDRII---RTDWDAGFK------EGRQY 93
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 55.8 bits (134), Expect = 7e-11
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
P ++ +F+KNL +++D + L F FGNI+ K+V DENG SKG+GF+ F + +
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQE 59
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE 207
AAE+AI +MNG ++ FV +
Sbjct: 60 AAERAIEKMNGMLLNDRKVFVGRFK 84
Score = 52.3 bits (125), Expect = 1e-09
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKH 276
P L+ + IF+ NL +I+N + F+ FG I S +V D K GF+ F +
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA 60
Query: 277 ATHAVSTMNGHVFKSKPLKVTLSGTK 302
A A+ MNG + + + V ++
Sbjct: 61 AERAIEKMNGMLLNDRKVFVGRFKSR 86
Score = 47.7 bits (113), Expect = 5e-08
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + NL+ S+DN+AL + F FG + +V ++N S+G+ + F T A++A +MN
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 69
Query: 97 GHLIGSKPVIITF 109
G L+ + V +
Sbjct: 70 GMLLNDRKVFVGR 82
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 55.1 bits (132), Expect = 1e-10
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNG-H 287
NK+++ NL + + +LF + ++ F+++ A A+ T++G
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKV 61
Query: 288 VFKSKPLKVTLSGTK 302
K ++V S +K
Sbjct: 62 ELHGKIMEVDYSVSK 76
Score = 48.9 bits (116), Expect = 2e-08
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
K+++ NL V ++L+ F + ++ G+ F+ + A +AI +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQV-----LLKSGYAFVDYPDQNWAIRAIETL 57
Query: 192 NGRM 195
+G++
Sbjct: 58 SGKV 61
Score = 43.1 bits (101), Expect = 2e-06
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVE 94
N+L++ NL P+V L F +V G+A + + A +A
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS-----GYAFVDYPDQNWAIRAIET 56
Query: 95 MNG-HLIGSKPVIITFVELKPGQRS 118
++G + K + + + K RS
Sbjct: 57 LSGKVELHGKIMEVDYSVSK-KLRS 80
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 54.7 bits (131), Expect = 1e-10
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFG-NIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
K + V L + + +EE +S F G + G+S G+GF+ + K AEKAI
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 189 IEMNGRMIQHNSTFVSLAE 207
+NG +Q + VS A
Sbjct: 62 NTLNGLRLQTKTIKVSYAR 80
Score = 52.8 bits (126), Expect = 7e-10
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAV 281
K + V LP N+ EF LF G I S LV DK GF+ +I PK A A+
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 282 STMNGHVFKSKPLKVTLS 299
+T+NG ++K +KV+ +
Sbjct: 62 NTLNGLRLQTKTIKVSYA 79
Score = 45.5 bits (107), Expect = 3e-07
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
L VN L ++ + + F G V +S G+ + + P +A+KA +
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 96 NGHLIGSKPVIITF 109
NG + +K + +++
Sbjct: 65 NGLRLQTKTIKVSY 78
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 55.1 bits (132), Expect = 1e-10
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+++V NL + ++++ F K+G I ++ + F F++F + AE A+
Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG--GPPFAFVEFEDPRDAEDAVYGR 73
Query: 192 NGRMIQHNSTFVSLA 206
+G V
Sbjct: 74 DGYDYDGYRLRVEFP 88
Score = 54.3 bits (130), Expect = 3e-10
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHAV 281
+I+V NLP +I + E++F ++G I L + F+EF P+ A AV
Sbjct: 11 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70
Query: 282 STMNGHVFKSKPLKVTLS 299
+G+ + L+V
Sbjct: 71 YGRDGYDYDGYRLRVEFP 88
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 54.7 bits (131), Expect = 2e-10
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHAT 278
P + V L + E+F+++G I S+V D + F+ F A
Sbjct: 6 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAK 65
Query: 279 HAVSTMNGHVFKSKPLKV 296
A NG + ++V
Sbjct: 66 EAKERANGMELDGRRIRV 83
Score = 51.6 bits (123), Expect = 2e-09
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFS 180
G + V L E +L+ F K+G I +V IV D ++ +S+GF F+ F +
Sbjct: 1 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 60
Query: 181 YKAAEKAIIEMNGRMI 196
A++A NG +
Sbjct: 61 VDDAKEAKERANGMEL 76
Score = 49.3 bits (117), Expect = 1e-08
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAI 79
G R+N + N L V L + L F K+G + DV + + ++ SRGFA
Sbjct: 1 GNRANPDPNCC-----LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAF 55
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVII 107
+ F +AK+A+ NG + + + +
Sbjct: 56 VYFENVDDAKEAKERANGMELDGRRIRV 83
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 54.7 bits (131), Expect = 2e-10
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKA 187
+ ++V L +T+ ++EL+ F ++G II +I+ D G S+G GFI+F AE+A
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 188 IIEMNGRMIQ 197
I +NG+
Sbjct: 65 IKGLNGQKPS 74
Score = 50.8 bits (121), Expect = 4e-09
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHA 280
R ++V+ LP + E E+LF+++G I +S ++ D+ GFI F A A
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 281 VSTMNGHVF--KSKPLKVTLS 299
+ +NG ++P+ V +
Sbjct: 65 IKGLNGQKPSGATEPITVKFA 85
Score = 48.1 bits (114), Expect = 4e-08
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKA 91
++ L+V+ L ++ + L F ++G + R+ ++ SRG I F+ EA++A
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 92 RVEMNGHLIG--SKPVIITF 109
+NG ++P+ + F
Sbjct: 65 IKGLNGQKPSGATEPITVKF 84
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 54.4 bits (130), Expect = 3e-10
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVR------DENGKSKGFGFIQFFSYKAAE 185
+++V N+ + EE + F + + + + K F F++F S
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 186 KAI----IEMNGRMI 196
+A+ I G+ +
Sbjct: 63 QAMAFDGIIFQGQSL 77
Score = 47.4 bits (112), Expect = 7e-08
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS-----------DKHIGFIEFIMP 274
AR+ ++V N+P I + F + + DK+ F+EF
Sbjct: 1 ARR--LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV 58
Query: 275 KHATHAVSTMNGHVFKSKPLKV 296
T A+ +G +F+ + LK+
Sbjct: 59 DETTQAM-AFDGIIFQGQSLKI 79
Score = 45.5 bits (107), Expect = 3e-07
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR------NKNDESRGFAIIVFNTPAEAK 89
L+V N+ + +A+++ F L + A + ++ + FA + F + E
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 90 KARVEMNGHLIGSKPVII 107
+A + +G + + + I
Sbjct: 63 QA-MAFDGIIFQGQSLKI 79
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 54.3 bits (130), Expect = 3e-10
Identities = 14/84 (16%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG----FIEFIMPKHATH 279
+ ++ V+N+P + + ++F +FG I ++ ++ F+ F A
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 66
Query: 280 AVSTMNGHVFKSKPLKVTLSGTKP 303
A ++G V + + ++V + +
Sbjct: 67 AREKLHGTVVEGRKIEVNNATARV 90
Score = 54.3 bits (130), Expect = 3e-10
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSY 181
G E + ++ V N+ + +L+ F +FG I++V+I+ +E SKGFGF+ F +
Sbjct: 3 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENS 61
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLAE 207
A++A +++G +++ V+ A
Sbjct: 62 ADADRAREKLHGTVVEGRKIEVNNAT 87
Score = 46.2 bits (109), Expect = 2e-07
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
S+ + LHV+N+ + L F +FG + DV + N+ S+GF + F
Sbjct: 1 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFE 59
Query: 84 TPAEAKKARVEMNGHLIGSKPVIITFVELKP 114
A+A +AR +++G ++ + + + +
Sbjct: 60 NSADADRAREKLHGTVVEGRKIEVNNATARV 90
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 53.8 bits (129), Expect = 3e-10
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAI-- 188
K+F+ L +++LK +F KFG +++ + D G+S+GFGF+ F ++ +K +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 189 --IEMNGRMIQ 197
++NG++I
Sbjct: 61 KEHKLNGKVID 71
Score = 45.7 bits (108), Expect = 2e-07
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAVST 283
K+F+ L + + ++ F++FG + +L D GF+ F + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD- 59
Query: 284 MNGHVFKSKPLKV 296
H K +
Sbjct: 60 QKEHKLNGKVIDP 72
Score = 43.0 bits (101), Expect = 2e-06
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ + L + L + F KFG + D + + SRGF ++F K ++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV-MDQ 60
Query: 96 NGHLIGSKPV 105
H + K +
Sbjct: 61 KEHKLNGKVI 70
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 53.9 bits (129), Expect = 4e-10
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 110 VELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENG 168
+E P +R K E++Q++K +F+ L EE L++++ ++G + + ++RD +
Sbjct: 5 LETVPLERKKR---EKEQFRK--LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK 59
Query: 169 KSKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
+S+GFGF+ F S + A + I A
Sbjct: 60 RSRGFGFVTFSSMAEVDAA-MAARPHSIDGRVVEPKRA 96
Score = 43.1 bits (101), Expect = 3e-06
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 23 RSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIV 81
R +E + K L + L ++L N ++++G L D V R+ SRGF +
Sbjct: 12 RKKREKEQFRK---LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVT 68
Query: 82 FNTPAEAKKARVEMNGHLIGSKPV 105
F++ AE A + H I + V
Sbjct: 69 FSSMAEVDAA-MAARPHSIDGRVV 91
Score = 43.1 bits (101), Expect = 3e-06
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVS------DKHIGFIEFIMPKHA 277
+ + K+F+ L + ++G +T ++ + GF+ F
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 278 THAVSTMNGHVFKSKPLKV 296
A++ H + ++
Sbjct: 76 DAAMA-ARPHSIDGRVVEP 93
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 53.5 bits (128), Expect = 5e-10
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK----HIGFIEFIMPKHATHAVSTM 284
++V NL ++ +LF++ G S ++++ F+EF + A A++ M
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 285 NGHVFKSKPLKVTLSGTKP 303
NG K +KV + T
Sbjct: 69 NGRKILGKEVKVNWATTPS 87
Score = 52.4 bits (125), Expect = 1e-09
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
++V NL V E + F + G K++ + + + F++F+ ++ A A+ M
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-SNDPYCFVEFYEHRDAAAALAAM 68
Query: 192 NGRMIQHNSTFVSLAE 207
NGR I V+ A
Sbjct: 69 NGRKILGKEVKVNWAT 84
Score = 47.3 bits (112), Expect = 8e-08
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL V ++ F + G + ++ + F +A A MN
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-FVEFYEHRDAAAALAAMN 69
Query: 97 GHLIGSKPVIITFVELKPGQR 117
G I K V + + Q+
Sbjct: 70 GRKILGKEVKVNWATTPSSQK 90
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 53.5 bits (128), Expect = 5e-10
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAV 281
K ++V L +++ F FG IT + D F+EF + + A A+
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 282 STMNGHVFKSKPLKVTLS 299
MN + ++V L+
Sbjct: 65 DNMNESELFGRTIRVNLA 82
Score = 52.4 bits (125), Expect = 1e-09
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAI 188
K ++V L E VD++ L + FI FG+I +++I D E K +GF F++F + A AI
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAI 64
Query: 189 IEMNGRMIQHNSTFVSLAE 207
MN + + V+LA+
Sbjct: 65 DNMNESELFGRTIRVNLAK 83
Score = 45.0 bits (106), Expect = 5e-07
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L+V L VD++ L F FG + D+++ + ++ RGFA + F +A A M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 96 NGHLIGSKPVIITF 109
N + + + +
Sbjct: 68 NESELFGRTIRVNL 81
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 53.5 bits (128), Expect = 5e-10
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 116 QRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIE-VKIVRDENGKSKGFG 174
Q G +++ + +F+ +L + +++L F+ FGN++ + + SK FG
Sbjct: 4 QSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFG 63
Query: 175 FIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F+ + + +A+ AI MNG I V L
Sbjct: 64 FVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 96
Score = 49.7 bits (118), Expect = 1e-08
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHATHAVS 282
+F+ +LP + + ++F FG + S+ + DK F+ + P A A+
Sbjct: 19 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 78
Query: 283 TMNGHVFKSKPLKVTLSGTK 302
+MNG K LKV L +K
Sbjct: 79 SMNGFQIGMKRLKVQLKRSK 98
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 53.0 bits (127), Expect = 6e-10
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAI-- 188
K+FV L EE+++ +F FG + +++ D K +GF FI F + +K +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 189 --IEMNGRMIQ 197
+ +
Sbjct: 61 KYHNVGLSKCE 71
Score = 44.6 bits (105), Expect = 5e-07
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKARVEM 95
+ V L P + + F FG + + + + ++ RGF I F KK +E
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI-MEK 60
Query: 96 NGHLIGSKPV 105
H +G
Sbjct: 61 KYHNVGLSKC 70
Score = 43.4 bits (102), Expect = 1e-06
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAVST 283
KIFV L + + E F FG + S L D FI F + +
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME- 59
Query: 284 MNGHVFKSKPLKV 296
H ++
Sbjct: 60 KKYHNVGLSKCEI 72
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 53.6 bits (128), Expect = 6e-10
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAVS 282
++FV NL + + E+LF+ +G ++ D F+ F+ P+HA A +
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 283 TMNGHVFKSKPLKVTLSGTKPGVSITNP 310
++G VF+ + L V S K S + P
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEASQSGP 96
Score = 52.4 bits (125), Expect = 1e-09
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKAIIE 190
++FV+NL T EE+L+ F +G + E+ D K KGF F+ F + A KA E
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 191 MNGRMIQHNSTFVSLAE 207
++G++ Q V +
Sbjct: 70 VDGQVFQGRMLHVLPST 86
Score = 49.7 bits (118), Expect = 1e-08
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAI 79
G+ + + +++ V NL + + L F +G L ++ + + +GFA
Sbjct: 1 GSSGSSGSGRLF------VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAF 54
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRSKPVGP 123
+ F P A KA E++G + + + + + + GP
Sbjct: 55 VTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS--TIKKEASQSGP 96
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 53.4 bits (128), Expect = 6e-10
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQFFSYKAAEKA 187
K + V L E++LK +F FG ++ V++ +D + G SKGFGF++F Y+ K
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 188 IIEMN---GRMIQ 197
+ + + GR
Sbjct: 67 MSQRHMIDGRWCD 79
Score = 42.7 bits (100), Expect = 4e-06
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHA 280
+ + + V LP + +E F+ FG + + D GF+ F +
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 281 VSTMNGHVFKSKPLKVTLSGTK 302
+S H+ + L +K
Sbjct: 67 MSQR--HMIDGRWCDCKLPNSK 86
Score = 40.3 bits (94), Expect = 2e-05
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN-DESRGFAIIVFNTPAEAKKA 91
K ++L V L Q L F FG + V+V ++ S+GF + F K
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 66
Query: 92 RVEMNGHLIGSKPVIITFVELKPGQ 116
+ H+I + K Q
Sbjct: 67 MSQR--HMIDGRWCDCKLPNSKQSQ 89
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 53.1 bits (127), Expect = 6e-10
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM 284
P + N ++V + + F+ FG I S+ ++ F+ + + A AV+ +
Sbjct: 2 PRKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAEL 59
Query: 285 NGHVFKSKPLKVTLSGTKP 303
NG +S LKV ++ +P
Sbjct: 60 NGTQVESVQLKVNIARKQP 78
Score = 45.4 bits (107), Expect = 3e-07
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 129 KKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
K + ++V + L+ F FGNII++ + + F+ + ++A++A+
Sbjct: 4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP-----RNCAFVTYEKMESADQAV 56
Query: 189 IEMNGRMIQHNSTFVSLA 206
E+NG ++ V++A
Sbjct: 57 AELNGTQVESVQLKVNIA 74
Score = 39.2 bits (91), Expect = 4e-05
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 33 KENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
K N L+V + L F FG + D+ D R A + + A +A
Sbjct: 4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLS-----MDPPRNCAFVTYEKMESADQAV 56
Query: 93 VEMNGHLIGSKPVIITFVELKP 114
E+NG + S + + +P
Sbjct: 57 AELNGTQVESVQLKVNIARKQP 78
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 53.5 bits (128), Expect = 7e-10
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 114 PGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG-KSKG 172
+ + PEE+ + VF L + +L+ F G + +V+I+ D N +SKG
Sbjct: 4 VREPVDNLSPEERDART--VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKG 61
Query: 173 FGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+++F ++ I + G+ + V ++
Sbjct: 62 IAYVEFCEIQSVPL-AIGLTGQRLLGVPIIVQASQ 95
Score = 45.4 bits (107), Expect = 5e-07
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
+ L + + L + F G +RDVR+ ++N S+G A + F + +
Sbjct: 21 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL-AIGL 79
Query: 96 NGHLIGSKPVIITFVE 111
G + P+I+ +
Sbjct: 80 TGQRLLGVPIIVQASQ 95
Score = 43.9 bits (103), Expect = 2e-06
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281
+F L + I + E+ F+ G + ++SD K I ++EF + A+
Sbjct: 18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 77
Query: 282 STMNGHVFKSKPLKVTLS 299
+ G P+ V S
Sbjct: 78 G-LTGQRLLGVPIIVQAS 94
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 52.7 bits (126), Expect = 7e-10
Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 124 EEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKA 183
E+ ++V+NL+ + EE ++ F ++ K + + F+ F + +
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-----KKIRDYAFVHFSNRED 56
Query: 184 AEKAIIEMNGRMIQHNSTFVSLAE 207
A +A+ +NG+++ + V+LA+
Sbjct: 57 AVEAMKALNGKVLDGSPIEVTLAK 80
Score = 51.9 bits (124), Expect = 2e-09
Identities = 16/78 (20%), Positives = 31/78 (39%)
Query: 226 ARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMN 285
+ ++V NL + + E+ F + + F+ F + A A+ +N
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALN 65
Query: 286 GHVFKSKPLKVTLSGTKP 303
G V P++VTL+
Sbjct: 66 GKVLDGSPIEVTLAKPVD 83
Score = 43.9 bits (103), Expect = 1e-06
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
L+V NL S + + EF RV + R +A + F+ +A +A +N
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-----IRDYAFVHFSNREDAVEAMKALN 65
Query: 97 GHLIGSKPVIITF 109
G ++ P+ +T
Sbjct: 66 GKVLDGSPIEVTL 78
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 52.8 bits (126), Expect = 7e-10
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHV 288
+ I V NLP + N E +L + + + F+ + + A +A+ + +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTA-FVTLLNGEQAQNAIQMFHQYS 64
Query: 289 FKSKPLKVTLSGTKPGVS 306
F+ K L V L T +
Sbjct: 65 FRGKDLIVQLQPTDALLC 82
Score = 42.8 bits (100), Expect = 3e-06
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+ VKNL + + +E+ + ++K F+ + + A+ AI
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDL------KYCYVDRNKRTAFVTLLNGEQAQNAIQMF 60
Query: 192 NGRMIQHNSTFVSLAE 207
+ + V L
Sbjct: 61 HQYSFRGKDLIVQLQP 76
Score = 42.0 bits (98), Expect = 5e-06
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V NL + Q + + K + D ++ A + +A+ A +
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLKY------CYVDRNKRTAFVTLLNGEQAQNAIQMFH 61
Query: 97 GHLIGSKPVIITFVELKPGQRSKP 120
+ K +I+ S P
Sbjct: 62 QYSFRGKDLIVQLQPTDALLCSGP 85
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 52.8 bits (126), Expect = 1e-09
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIE-VKIVRDENGK--SKGFGFIQFFSYKAAEKAI 188
++F+ + + EE+ K + V + K ++GF F+++ S++AA A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 189 IEMNGRMIQ 197
++ IQ
Sbjct: 63 RKLMPGRIQ 71
Score = 44.3 bits (104), Expect = 9e-07
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 36 ELHVNNLEPSVDNQALINEFKKFGTL-RDVRVARNKND--ESRGFAIIVFNTPAEAKKAR 92
L + + + ++ E K DV V + D ++RGFA + + + A AR
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 93 VEMNGH--LIGSKPVIITFVELKP 114
++ + + + + E +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEI 86
Score = 41.6 bits (97), Expect = 8e-06
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD--------KHIGFIEFIMPKHATHAV 281
++F+ +P E E A+ +V + F+E+ + A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 282 STMNGHVFK--SKPLKVTLSGTKP 303
+ + + V + +
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPEI 86
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 52.7 bits (126), Expect = 1e-09
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQ 177
P ++ + + + KNL + E+ELK F I V +GKSKG +I+
Sbjct: 5 EDPCTSKKVRAAR-TLLAKNLSFNITEDELKEVFEDALEIRLVSQ----DGKSKGIAYIE 59
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F S AEK + E G I S +
Sbjct: 60 FKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89
Score = 52.0 bits (124), Expect = 2e-09
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLV-SDKHIGFIEFIMPKHATHAVSTMNGH 287
+ NL NI E +E+F I S K I +IEF A + G
Sbjct: 17 RTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGA 76
Query: 288 VFKSKPLKVTLSGTKPG 304
+ + + +G K G
Sbjct: 77 EIDGRSVSLYYTGEKGG 93
Score = 49.3 bits (117), Expect = 2e-08
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 16 ISDDEGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESR 75
+ D ++ + + NL ++ L F+ +R V +++ +S+
Sbjct: 4 LEDPCTSKKVRAARTLL------AKNLSFNITEDELKEVFEDALEIRLV----SQDGKSK 53
Query: 76 GFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQR 117
G A I F + A+A+K E G I + V + + K G R
Sbjct: 54 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 52.9 bits (126), Expect = 1e-09
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI--------------GFIEFIMP 274
+ I+V L ++ + + F + G + + I + + P
Sbjct: 9 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 68
Query: 275 KHATHAVSTMNGHVFKSKPLKVTLSGTKP 303
A AV +G F+ LKV+L+ KP
Sbjct: 69 PTAKAAVEWFDGKDFQGSKLKVSLARKKP 97
Score = 50.5 bits (120), Expect = 8e-09
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD---------ENGKSKGF 173
P+E ++V+ L ++V ++L F + G + K E GK KG
Sbjct: 2 PDEDS-DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 60
Query: 174 GFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+ + A+ A+ +G+ Q + VSLA
Sbjct: 61 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 94
Score = 44.8 bits (105), Expect = 9e-07
Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 15/99 (15%)
Query: 25 NKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARN---------KNDESR 75
+ +N+ +Y V L SV L + FK+ G ++ + + + +
Sbjct: 5 DSDNSAIY------VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPK 58
Query: 76 GFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITFVELKP 114
G A + + P AK A +G + ++ KP
Sbjct: 59 GDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKP 97
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 51.3 bits (122), Expect = 2e-09
Identities = 9/77 (11%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNII-EVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
+++ N + + ++ + +++ S+ F +I S + A + +
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 191 MNGRMIQHNSTFVSLAE 207
+NG I+ + ++
Sbjct: 63 LNGLKIEGYTLVTKVSN 79
Score = 49.0 bits (116), Expect = 2e-08
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVST 283
+++ N P + +L + S + + +I+ + A + V
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 284 MNGHVFKSKPLKVTLS 299
+NG + L +S
Sbjct: 63 LNGLKIEGYTLVTKVS 78
Score = 42.5 bits (99), Expect = 3e-06
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLR-DVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
E L + N PS + + + + + +R+ + + SR FA I + +A+
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 93 VEMNGHLIGSKPVIITF 109
++NG I ++
Sbjct: 61 EKLNGLKIEGYTLVTKV 77
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.8 bits (121), Expect = 4e-09
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 123 PEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSY 181
P + + V NL E E +L+ F FG+I + + +D+ G+SKGF FI F
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 182 KAAEKAIIEMNGRMIQHNSTFVSLA 206
+ A +AI ++G H V A
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEWA 85
Score = 50.0 bits (119), Expect = 8e-09
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 221 PLLQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMP 274
P + I V NL + ++ +ELF FG+I+ L DK FI F
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 275 KHATHAVSTMNGHVFKSKPLKVTLS 299
+ A A++ ++G + L V +
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEWA 85
Score = 45.8 bits (108), Expect = 2e-07
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKAR 92
+ V NL L F+ FG++ + +A++K +S+GFA I F+ +A +A
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 67
Query: 93 VEMNGHLIGSKPVIITF 109
++G + + +
Sbjct: 68 AGVSGFGYDHLILNVEW 84
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 50.1 bits (119), Expect = 5e-09
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAIIE 190
K+FV L E++K +F +FG + + ++ + +GFGF+ F S EK E
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CE 59
Query: 191 MNGRMIQHNSTFVSLA 206
++ I + A
Sbjct: 60 IHFHEINNKMVECKKA 75
Score = 44.3 bits (104), Expect = 6e-07
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVST 283
KIFV L N + + F +FG + + L+ D + GF+ F
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE- 59
Query: 284 MNGHVFKSKPLKV 296
++ H +K ++
Sbjct: 60 IHFHEINNKMVEC 72
Score = 42.4 bits (99), Expect = 3e-06
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARN-KNDESRGFAIIVFNTPAEAKKARVEM 95
+ V L + + + + F++FG + D + + + RGF + F + +K E+
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEI 60
Query: 96 NGHLIGSKPV 105
+ H I +K V
Sbjct: 61 HFHEINNKMV 70
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 50.1 bits (119), Expect = 1e-08
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 132 KVFVKNLVETVDEEELKSHF-IKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
K+FV L + L+ +F V I + GKS+G+GF+ AAE+A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 191 MNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQP 225
N +I V+LA + KP LQ
Sbjct: 72 PNP-IIDGRKANVNLA--------YLGAKPRSLQT 97
Score = 43.2 bits (101), Expect = 3e-06
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHAVST 283
KIFV LP + ++ + F FG I + +++D+ GF+ A A
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 284 MNGHVFKSKPLKVTLSGTKP 303
N + + V L+
Sbjct: 72 PN-PIIDGRKANVNLAYLGA 90
Score = 37.8 bits (87), Expect = 2e-04
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
+ V L + +L F+ FG + + V ++ +SRG+ + A A++A +
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVG 122
N + G + + L RS G
Sbjct: 73 NPIIDG-RKANVNLAYLGAKPRSLQTG 98
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 49.9 bits (119), Expect = 1e-08
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 122 GPEEKQYKKDKVFVKNLVETVD-----------EEELKSHFIKFGNIIEVKIVRDENGKS 170
GP ++++ V +KN+ +D E+L+ KFG I ++ +
Sbjct: 1 GPSRMRHER-VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR---HP 56
Query: 171 KGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLA 206
G + F + A+ I ++GR
Sbjct: 57 DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
Score = 42.6 bits (100), Expect = 5e-06
Identities = 9/55 (16%), Positives = 17/55 (30%)
Query: 55 FKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLIGSKPVIITF 109
+ +R + G A + F P EA ++G G + +
Sbjct: 37 RVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQA 91
Score = 34.5 bits (79), Expect = 0.003
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 244 EFEELFARFGTITSSSLVSDKHIG--FIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
+ ++FG I L G + F P+ A + + T++G F + +
Sbjct: 35 DLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAW 92
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 49.6 bits (118), Expect = 1e-08
Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 5/71 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDEN-GKSKGFGFIQFFSYKAAEKAI-- 188
K+F+ L +E L+SHF ++G + + ++RD N +S+GFGF+ + + + + A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 189 --IEMNGRMIQ 197
+++GR+++
Sbjct: 68 RPHKVDGRVVE 78
Score = 46.2 bits (109), Expect = 2e-07
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHA 277
+P + K+F+ L + F ++GT+T ++ D + GF+ + +
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 278 THAVSTMNGHVFKSKPLKV 296
A++ H + ++
Sbjct: 62 DAAMN-ARPHKVDGRVVEP 79
Score = 40.0 bits (93), Expect = 2e-05
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKND-ESRGFAIIVFNTPAEAKKARVEM 95
L + L +++L + F+++GTL D V R+ N SRGF + + T E A +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA-MNA 67
Query: 96 NGHLIGSKPV 105
H + + V
Sbjct: 68 RPHKVDGRVV 77
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 49.4 bits (117), Expect = 2e-08
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 125 EKQYKKD--KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYK 182
KQ ++D +++ NL ++DE+EL++ FG +I +I+RD +G S+G GF + S +
Sbjct: 11 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTE 70
Query: 183 AAEKAIIEMNGRMIQHNSTFVSLAE 207
E I NG+ I+ + E
Sbjct: 71 KCEAVIGHFNGKFIKTPPGVSAPTE 95
Score = 42.1 bits (98), Expect = 7e-06
Identities = 21/88 (23%), Positives = 37/88 (42%)
Query: 20 EGARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAI 79
G ++ + L+++NL S+D Q L N K FG + R+ R+ + SRG
Sbjct: 4 SGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF 63
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPVII 107
+ + + NG I + P +
Sbjct: 64 ARMESTEKCEAVIGHFNGKFIKTPPGVS 91
Score = 40.5 bits (94), Expect = 2e-05
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHAT 278
Q ++++NLP +++ E E + FG + S+ ++ D + +GF +
Sbjct: 14 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCE 73
Query: 279 HAVSTMNGHVFKSKPLKVTLS 299
+ NG K+ P +
Sbjct: 74 AVIGHFNGKFIKTPPGVSAPT 94
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 49.3 bits (117), Expect = 2e-08
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
V L V +L K G + + + ++ + F ++ + + +++A + +N
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP-----YSFARYRTTEESKRAYVTLN 77
Query: 193 GRMI 196
G+ +
Sbjct: 78 GKEV 81
Score = 46.6 bits (110), Expect = 2e-07
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVST 283
+ + L + ++ ++ + + G + + + +K F + + + A T
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT 75
Query: 284 MNGH-VFKSKPLKVTL 298
+NG V K+TL
Sbjct: 76 LNGKEVVDDLGQKITL 91
Score = 36.2 bits (83), Expect = 8e-04
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 41 NLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMNGHLI 100
L V L+ +K G + + + NK ++ + T E+K+A V +NG +
Sbjct: 27 GLGNGVSRNQLLPVLEKCGLVDALLMPPNKP-----YSFARYRTTEESKRAYVTLNGKEV 81
Query: 101 G-----SKPVIITFVE 111
+ + FVE
Sbjct: 82 VDDLGQKITLYLNFVE 97
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 48.9 bits (116), Expect = 2e-08
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
VFV + E+EL+ F ++G++++V I + F F+ F + A+
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR----AFAFVTFADDQIAQSLC--G 60
Query: 192 NGRMIQHNSTFVSLAE 207
+I+ S +S AE
Sbjct: 61 EDLIIKGISVHISNAE 76
Score = 44.6 bits (105), Expect = 7e-07
Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ V + L F ++G + DV R FA + F A+
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVF----IPKPFRAFAFVTFADDQIAQSLC--GE 61
Query: 97 GHLIGSKPVIITFVELKPGQRSKP 120
+I V I+ E K S P
Sbjct: 62 DLIIKGISVHISNAEPKHNSNSGP 85
Score = 43.5 bits (102), Expect = 2e-06
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITS-SSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
+ +FV ++ E E F+++G + + F+ F + A
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC--GEDL 63
Query: 288 VFKSKPLKVTLSGTKP 303
+ K + ++ + K
Sbjct: 64 IIKGISVHISNAEPKH 79
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 48.7 bits (115), Expect = 3e-08
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIE-VKIVRDENGKSKGFGFIQFFSYKAAEKAI 188
K + N+ ++ + ++ V ++ D NG+ G +QF + A K+
Sbjct: 8 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE 67
Query: 189 IEMNGRMIQHNSTFVSLA 206
++ + + FV +
Sbjct: 68 -RLHRKKLNGREAFVHVV 84
Score = 37.9 bits (87), Expect = 2e-04
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKF-GTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEM 95
H+ N+ S+ ++ + V V + N + G A++ F +A+K+ +
Sbjct: 11 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS-ERL 69
Query: 96 NGHLIGSKPVIITFVELKPGQRSKPVGPEE 125
+ + + + V L+ + + P +
Sbjct: 70 HRKKLNGREAFVHVVTLEDMREIEKNPPAQ 99
Score = 36.0 bits (82), Expect = 0.001
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 7/79 (8%)
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHATHA 280
K + N+P +I + + ++ V + G ++F A +
Sbjct: 7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKS 66
Query: 281 VSTMNGHVFKSKPLKVTLS 299
++ + V +
Sbjct: 67 ER-LHRKKLNGREAFVHVV 84
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 48.2 bits (114), Expect = 4e-08
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 229 NKIFVANLPSNINNS-----EFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVST 283
+ + ++ + +FE LF + T+ I F P A A
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR 65
Query: 284 MNGHVFKSKPLKVTLSGTKP-GVSITNPTKAPKKP 317
++ F K +K+ + T G S P K
Sbjct: 66 LHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKSG 100
Score = 43.6 bits (102), Expect = 2e-06
Identities = 10/100 (10%), Positives = 25/100 (25%), Gaps = 10/100 (10%)
Query: 131 DKVFVKNLVETVDEE-----ELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAE 185
+ + V E + +S F + + + I F + +A
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAA 60
Query: 186 KAIIEMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQP 225
A + ++ + A+ + P
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKSG 100
Score = 40.5 bits (94), Expect = 2e-05
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ + S + F+ + + ++ I F+ P A AR+ ++
Sbjct: 13 ANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLH 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGP 123
K + + F + S P
Sbjct: 68 KTEFLGKEMKLYFAQTLHIGSSHLAPP 94
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 47.7 bits (113), Expect = 5e-08
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 132 KVFVKNLVETVDEEELKSH----FIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKA 187
+++ NL E + ++ELK F +FG I+++ + R +G F+ F +A A
Sbjct: 5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK--MRGQAFVIFKEVSSATNA 62
Query: 188 IIEMNGRMIQHNSTFVSLAE 207
+ M G + A+
Sbjct: 63 LRSMQGFPFYDKPMRIQYAK 82
Score = 47.7 bits (113), Expect = 6e-08
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 228 KNKIFVANLPSNINNSE----FEELFARFGTITSSSLVSD---KHIGFIEFIMPKHATHA 280
+ I++ NL I E +F+RFG I + + F+ F AT+A
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 281 VSTMNGHVFKSKPLKVTLSGTK 302
+ +M G F KP+++ + T
Sbjct: 63 LRSMQGFPFYDKPMRIQYAKTD 84
Score = 42.7 bits (100), Expect = 3e-06
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 37 LHVNNLEPSVDNQALINE----FKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
+++NNL + L F +FG + D+ V +++ + RG A ++F + A A
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILV--SRSLKMRGQAFVIFKEVSSATNAL 63
Query: 93 VEMNGHLIGSKPVIITF 109
M G KP+ I +
Sbjct: 64 RSMQGFPFYDKPMRIQY 80
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 47.8 bits (113), Expect = 5e-08
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG-KSKGFGFIQFFSYKAAEKAIIEM 191
+FV ++ E E+E++ F +G I + + D SKG+ +++ ++K A A +
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 192 NGRMIQHNSTFVSLA 206
NG I + V
Sbjct: 70 NGAEIMGQTIQVDWC 84
Score = 47.4 bits (112), Expect = 7e-08
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHAVS 282
+FV ++ E +E F +G I + L D+ +E+ K A A
Sbjct: 8 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 67
Query: 283 TMNGHVFKSKPLKVTLSGTK 302
+NG + ++V K
Sbjct: 68 ALNGAEIMGQTIQVDWCFVK 87
Score = 43.9 bits (103), Expect = 1e-06
Identities = 13/74 (17%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
L V ++ + +F +G ++++ + ++ S+G+A++ + T +A A+ +
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 69
Query: 96 NGHLIGSKPVIITF 109
NG I + + + +
Sbjct: 70 NGAEIMGQTIQVDW 83
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.8 bits (113), Expect = 6e-08
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFIQFFSYKAAEKAIIE 190
K+FV L +E+ L+ F K+G I EV +V+D +S+GFGF+ F + A+ A++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 191 MNGRMIQHNSTFVSLAE 207
MNG+ + V A
Sbjct: 67 MNGKSVDGRQIRVDQAG 83
Score = 45.9 bits (108), Expect = 2e-07
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAV 281
+ K+FV L + N E++F+++G I+ +V D + GF+ F A A+
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 282 STMNGHVFKSKPLKVTLSGTKP 303
MNG + ++V +G
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSS 86
Score = 45.5 bits (107), Expect = 3e-07
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 34 ENELHVNNLEPSVDNQALINEFKKFG-TLRDVRVARNKNDESRGFAIIVFNTPAEAKKAR 92
E +L V L + Q+L F K+G V V + SRGF + F +AK A
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 93 VEMNGHLIGSKPVIITFVELKPGQRS 118
+ MNG + + + + RS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNRS 90
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 47.8 bits (113), Expect = 6e-08
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHV 288
+++V L N + + F RFG+I + V +I++ A A + M G
Sbjct: 18 TRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFP 77
Query: 289 F--KSKPLKVTLSGTKPG 304
+ L+V + + P
Sbjct: 78 LGGPDRRLRVDFAKSGPS 95
Score = 46.2 bits (109), Expect = 2e-07
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+++V L L F +FG+I + V+ ++ F +IQ+ S AA+ A +M
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS-----FAYIQYESLDAAQAACAKM 73
Query: 192 NGRMI 196
G +
Sbjct: 74 RGFPL 78
Score = 38.9 bits (90), Expect = 7e-05
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAII 80
G+ K L V L P+ AL EF +FG++R + + + FA I
Sbjct: 4 GSSGKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS-----FAYI 58
Query: 81 VFNTPAEAKKARVEMNGHLIGSKPVIITFVELKPGQRS 118
+ + A+ A +M G +G + K G S
Sbjct: 59 QYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSS 96
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 47.0 bits (111), Expect = 8e-08
Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 125 EKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAA 184
+ K V++K +++K G ++ +++ R + KG F+ F S ++A
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 60
Query: 185 EKAIIEMNGRMIQHNSTFVSLAE 207
+K +E G+ + + +
Sbjct: 61 KKF-VETPGQKYKETDLLILFKD 82
Score = 38.2 bits (88), Expect = 1e-04
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 227 RKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHATHAV 281
+ +++ P++ + +E G + + + K F+ F + A V
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV 64
Query: 282 STMNGHVFKSKPLKV 296
G +K L +
Sbjct: 65 E-TPGQKYKETDLLI 78
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 48.4 bits (114), Expect = 1e-07
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 111 ELKPGQRSKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENG-K 169
+ + + PE + + V + TVDE +L+ F ++G I VKIV D +
Sbjct: 25 QQQQHIPPTQMNPEPDVLRN--LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ 82
Query: 170 SKGFGFIQFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
S+G+GF++F S +A++AI +NG I + V+LA
Sbjct: 83 SRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120
Score = 47.2 bits (111), Expect = 3e-07
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHA 277
+P + V +P+ ++ + +LF R+G I S +V D+ GF++F A
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 278 THAVSTMNGHVFKSKPLKVTLSGTKP 303
A++ +NG +K LKV L+ +
Sbjct: 98 QQAIAGLNGFNILNKRLKVALAASGH 123
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.0 bits (111), Expect = 1e-07
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 118 SKPVGPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDE-NGKSKGFGFI 176
S G + F+ NL V EE +K F + KGFG+
Sbjct: 3 SGSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYA 62
Query: 177 QFFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
+F + A+ +N + + V +A+
Sbjct: 63 EFEDLDSLLSAL-SLNEESLGNKRIRVDVAD 92
Score = 43.2 bits (101), Expect = 3e-06
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
+ NL V +++ F+ + +GF F A + +
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA-LSL 76
Query: 96 NGHLIGSKPVIITFVELKPGQRSKP 120
N +G+K + + + + S P
Sbjct: 77 NEESLGNKRIRVDVADQAQDKDSGP 101
Score = 42.8 bits (100), Expect = 4e-06
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSD------KHIGFIEFIMPKHATHAVS 282
F+ NLP ++ +E F K G+ EF A+S
Sbjct: 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 75
Query: 283 TMNGHVFKSKPLKVTLSGTKP 303
+N +K ++V ++
Sbjct: 76 -LNEESLGNKRIRVDVADQAQ 95
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 45.5 bits (107), Expect = 2e-07
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVR-DENGKSKGFGFIQFFSYKAAEKAIIEM 191
++++ L +++L +G I+ K + K KG+GF+ F S AA+KA+ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 192 NGRMIQ 197
+Q
Sbjct: 61 KASGVQ 66
Score = 40.1 bits (93), Expect = 2e-05
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKH------IGFIEFIMPKHATHAVSTM 284
+++ L + + +L +G I S+ + DK GF++F P A AV+ +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 285 NGHVFKSKPLK 295
+++ K
Sbjct: 61 KASGVQAQMAK 71
Score = 37.1 bits (85), Expect = 2e-04
Identities = 13/70 (18%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNK-NDESRGFAIIVFNTPAEAKKARVEM 95
L++ L+P +Q L+ + +G + + +K ++ +G+ + F++P+ A+KA +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 96 NGHLIGSKPV 105
+ ++
Sbjct: 61 KASGVQAQMA 70
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 46.3 bits (109), Expect = 2e-07
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 6/80 (7%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAVS 282
+++ NL + + LFARF + FI F + A A+
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 283 TMNGHVFKSKPLKVTLSGTK 302
+NG+ K L + K
Sbjct: 79 LVNGYKLYGKILVIEFGKNK 98
Score = 43.2 bits (101), Expect = 3e-06
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 123 PEEKQYKKD----KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRD-ENGKSKGFGFIQ 177
P Y +++KNL V E +L S F +F I G+ +G FI
Sbjct: 7 PMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 66
Query: 178 FFSYKAAEKAIIEMNGRMIQHNSTFVSLAE 207
F + + A +A+ +NG + + +
Sbjct: 67 FPNKEIAWQALHLVNGYKLYGKILVIEFGK 96
Score = 35.1 bits (80), Expect = 0.002
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 35 NELHVNNLEPSVDNQALINEFKKFGTLRDV-RVARNKNDESRGFAIIVFNTPAEAKKARV 93
L++ NL P V + L++ F +F + R RG A I F A +A
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 94 EMNGHLIGSKPVIITF 109
+NG+ + K ++I F
Sbjct: 79 LVNGYKLYGKILVIEF 94
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 46.1 bits (108), Expect = 2e-07
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL ELK + ++ +V G ++ FG++ F S + EKA+ +
Sbjct: 15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-L 73
Query: 192 NGRMIQHNSTFVSLAE 207
G + N + +
Sbjct: 74 TGLKVFGNEIKLEKPK 89
Score = 40.3 bits (93), Expect = 3e-05
Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 224 QPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSD-----KHIGFIEFIMPKHAT 278
+ +F+ NL N + +E + + ++V + G+++F +
Sbjct: 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLE 68
Query: 279 HAVSTMNGHVFKSKPLKVTLSGTK 302
A+ + G +K+ +
Sbjct: 69 KAL-ELTGLKVFGNEIKLEKPKGR 91
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 45.6 bits (107), Expect = 3e-07
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 12/82 (14%)
Query: 227 RKNKIFVANLPSNINNSE---FEELFARFGTITSSSLVSDKHIG---------FIEFIMP 274
+KN +FV L + + E E F +FG I + + ++ +I
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 66
Query: 275 KHATHAVSTMNGHVFKSKPLKV 296
+ A A+ +N V + LK
Sbjct: 67 EDALRAIQCVNNVVVDGRTLKA 88
Score = 44.4 bits (104), Expect = 7e-07
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Query: 129 KKDKVFVKNLVETVDEEELKSHF---IKFGNIIEVKIVRDENGK----SKGFGFIQFFSY 181
+K+ VFV L + + + E+ KFG I +V I + ++ +
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 66
Query: 182 KAAEKAIIEMNGRMI 196
+ A +AI +N ++
Sbjct: 67 EDALRAIQCVNNVVV 81
Score = 41.7 bits (97), Expect = 7e-06
Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 30 KVYKENELHVNNLEPSVDNQALI---NEFKKFGTLRDVRVARNK----NDESRGFAIIVF 82
+V ++N + V L + + ++ F KFG + V + + + A + +
Sbjct: 4 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTY 63
Query: 83 NTPAEAKKARVEMNGHLIGSKPV 105
+A +A +N ++ + +
Sbjct: 64 IRSEDALRAIQCVNNVVVDGRTL 86
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 45.9 bits (108), Expect = 3e-07
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH- 287
+ V L ++ ++ E +FGTI ++ K +EF A V+
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVP 75
Query: 288 -VFKSKPLKVTLSGTKP 303
+ S +K
Sbjct: 76 VYIAGQQAFFNYSTSKR 92
Score = 44.4 bits (104), Expect = 1e-06
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 122 GPEEKQYKKDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSY 181
G K V V+ L E+V E +L KFG I V ++ + ++F +
Sbjct: 7 GSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-----QALVEFENI 61
Query: 182 KAAEKAIIEM--NGRMIQHNSTFVSLA 206
+A++ + I F + +
Sbjct: 62 DSAKECVTFAADVPVYIAGQQAFFNYS 88
Score = 41.3 bits (96), Expect = 1e-05
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 7/102 (6%)
Query: 24 SNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFN 83
S+ ++KV +HV L SV L+ +KFGT+ V + K A++ F
Sbjct: 5 SSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-----QALVEFE 59
Query: 84 TPAEAKKARVEMNGH--LIGSKPVIITFVELKPGQRSKPVGP 123
AK+ I + + K R GP
Sbjct: 60 NIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGP 101
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 45.1 bits (106), Expect = 3e-07
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 132 KVFVKNL-VETVDEEELKSHFIKFGNIIEVKIVR--DENGKSKGFGFIQFFSYKAAEKAI 188
++ ++NL E +DE L+ F FG+I ++ I E+ + F+ F + +AE+A+
Sbjct: 6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 65
Query: 189 IEMNGRMIQHNSTFVSLAE 207
+MN ++ + VSLA+
Sbjct: 66 -QMNRSLLGNREISVSLAD 83
Score = 40.1 bits (93), Expect = 2e-05
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 35 NELHVNNLEPSV-DNQALINEFKKFGTLRDVRVAR--NKNDESRGFAIIVFNTPAEAKKA 91
E+ + NL + D L F+ FG++ + + ++ + A +VF A++A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 92 RVEMNGHLIGSKPVIITFVELKP 114
++MN L+G++ + ++ + KP
Sbjct: 65 -LQMNRSLLGNREISVSLADKKP 86
Score = 40.1 bits (93), Expect = 2e-05
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 229 NKIFVANLPSN-INNSEFEELFARFGTITSSSLVSD-------KHIGFIEFIMPKHATHA 280
+I + NL + ++ + E F FG+I ++ + F+ F A A
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 64
Query: 281 VSTMNGHVFKSKPLKVTLSGTKP 303
+ MN + ++ + V+L+ KP
Sbjct: 65 LQ-MNRSLLGNREISVSLADKKP 86
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 45.4 bits (107), Expect = 5e-07
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 133 VFVKNLVETVD----------EEELKSHFIKFGNIIEVKIVRDENGKS---KGFGFIQFF 179
+ + N+V + E+++ K+G + ++I R +G G F++F
Sbjct: 7 LCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFT 66
Query: 180 SYKAAEKAIIEMNGRMIQHNSTFVSLA 206
S +KA+ + GR +
Sbjct: 67 SVFDCQKAMQGLTGRKFANRVVVTKYC 93
Score = 41.5 bits (97), Expect = 1e-05
Identities = 14/85 (16%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKN---DESRGFAIIVFNTP 85
N V E +++ E + + +E K+G ++ + + R + G + F +
Sbjct: 11 NMVLPEEL--LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSV 68
Query: 86 AEAKKARVEMNGHLIGSKPVIITFV 110
+ +KA + G ++ V+ +
Sbjct: 69 FDCQKAMQGLTGRKFANRVVVTKYC 93
Score = 29.6 bits (66), Expect = 0.17
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 264 KHIGFIEFIMPKHATHAVSTMNGHVFKSKPLKVTLS 299
F+EF A+ + G F ++ +
Sbjct: 58 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYC 93
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 44.8 bits (105), Expect = 6e-07
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIE 190
VF++NL +EE L +FG++ V++V + + SKG F QF + +AA+K +
Sbjct: 10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 69
Query: 191 MNGRMIQHNSTF 202
+
Sbjct: 70 ASLEAEGGGLKL 81
Score = 39.8 bits (92), Expect = 4e-05
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 12/87 (13%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAVS 282
+F+ NL + E+ +FG + +V F +F+ + A ++
Sbjct: 9 KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLA 68
Query: 283 TMN------GHVFKSKPLKVTLSGTKP 303
+ G + LKV L+ T+
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDLAVTRD 95
Score = 34.0 bits (77), Expect = 0.005
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 29 NKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAE 87
+ V + + + NL + +AL ++FG L+ VRV + + E S+G A F T
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 88 AKKARVEMN------GHLIGSKPVIITF 109
A+K + G + + + +
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDL 90
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 44.3 bits (104), Expect = 7e-07
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAI-- 188
K+FV + E +E L+ +F ++G I ++I+ D +GF F+ F + + +K +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 189 --IEMNGRMIQ 197
+NG +
Sbjct: 64 KYHTVNGHNCE 74
Score = 42.0 bits (98), Expect = 5e-06
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDK------HIGFIEFIMPKHATHAVST 283
KIFV + + + F ++G I +++D+ F+ F V
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI- 62
Query: 284 MNGHVFKSKPLKV 296
H +V
Sbjct: 63 QKYHTVNGHNCEV 75
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 44.0 bits (103), Expect = 1e-06
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGK-SKGFGFIQFFSYKAAEKAIIE 190
VFV N+ EE+LK F + G ++ ++V D KG+GF ++ + A A+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 191 MNGRMIQHNSTFVSLAE 207
+NGR + V A
Sbjct: 70 LNGREFSGRALRVDNAA 86
Score = 41.7 bits (97), Expect = 1e-05
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHI------GFIEFIMPKHATHAVST 283
+FV N+P + +++F+ G + S LV D+ GF E+ + A A+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 284 MNGHVFKSKPLKVTLSGTKP 303
+NG F + L+V + ++
Sbjct: 70 LNGREFSGRALRVDNAASEK 89
Score = 39.0 bits (90), Expect = 8e-05
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDE-SRGFAIIVFNTPAEAKKARVEM 95
+ V N+ + L + F + G + R+ ++ +G+ + A A +
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 96 NGHLIGSKPVIITFV-------ELKPGQRSKPV 121
NG + + + ELK PV
Sbjct: 71 NGREFSGRALRVDNAASEKNKEELKSLGTGAPV 103
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 43.0 bits (100), Expect = 2e-06
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHVFK 290
I + LP ++ N E +L + + K F+ + + A A++T + +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDK-YKGTAFVTLLNGEQAEAAINTFHQSRLR 59
Query: 291 SKPLKVTLSGTKP 303
+ L V L T
Sbjct: 60 ERELSVQLQPTDA 72
Score = 35.3 bits (80), Expect = 0.001
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+ ++ L V +E+ + K KG F+ + + AE AI +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELK------YCFVDKYKGTAFVTLLNGEQAEAAINTFH 54
Query: 193 GRMIQHNSTFVSLA 206
++ V L
Sbjct: 55 QSRLRERELSVQLQ 68
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 43.8 bits (102), Expect = 2e-06
Identities = 20/89 (22%), Positives = 34/89 (38%)
Query: 228 KNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
K I NLP+ +E +E F+RFG++ L +EF+ P A A +
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS 69
Query: 288 VFKSKPLKVTLSGTKPGVSITNPTKAPKK 316
F PL + + + + +
Sbjct: 70 KFHHVPLYLEWAPIGVFGAAPQKKDSQHE 98
Score = 43.4 bits (101), Expect = 3e-06
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 5/101 (4%)
Query: 130 KDKVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII 189
K + KNL E++ F +FG++ V + ++F A KA
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVL-----LPEGGITAIVEFLEPLEARKAFR 64
Query: 190 EMNGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK 230
+ H ++ A I K QPA K +
Sbjct: 65 HLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAE 105
Score = 33.0 bits (74), Expect = 0.014
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
+ NL + F +FG+L V + AI+ F P EA+KA +
Sbjct: 13 ILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-----GITAIVEFLEPLEARKAFRHLA 67
Query: 97 GHLIGSKPVIITFVELKPGQRSKPVGPEEKQYKKDK 132
P+ + + + + + + +K
Sbjct: 68 YSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEK 103
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 43.2 bits (101), Expect = 2e-06
Identities = 13/74 (17%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLV--SDKHIGFIEFIMPKHATHAVSTMNG 286
+ ++N+P +++ + + LF+ G + D+ + I+ + A A+ ++
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 70
Query: 287 H-VFKSKPLKVTLS 299
H + ++ L+V+ S
Sbjct: 71 HDLGENHHLRVSFS 84
Score = 39.0 bits (90), Expect = 6e-05
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEMN 192
+ + N+ +V EE+LK F G +++ ++ + IQ S + A +A+I+++
Sbjct: 13 LHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLH 69
Query: 193 GRMIQHN 199
+ N
Sbjct: 70 NHDLGEN 76
Score = 30.9 bits (69), Expect = 0.050
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 37 LHVNNLEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVFNTPAEAKKARVEMN 96
LH++N+ PSV + L F G V + R A+I + EA +A ++++
Sbjct: 13 LHLSNIPPSVSEEDLKVLFSSNGG---VVKGFKFFQKDRKMALIQMGSVEEAVQALIDLH 69
Query: 97 GHLIG-SKPVIITF 109
H +G + + ++F
Sbjct: 70 NHDLGENHHLRVSF 83
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 43.1 bits (101), Expect = 2e-06
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 231 IFVANLP-SNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVS--TMNGH 287
+ + + + +L FG I++ +++ + FIE + A AV T
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPA 70
Query: 288 VFKSKPLKVTLSGTKP 303
+ KP++V LS
Sbjct: 71 LVFGKPVRVHLSQKYK 86
Score = 30.8 bits (69), Expect = 0.054
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 133 VFVKNLVE-TVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAI--I 189
V + + +L FG I I+ N FI+ + + A+ A+
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN-----EAFIEMATTEDAQAAVDYY 65
Query: 190 EMNGRMIQHNSTFVSLAE 207
++ V L++
Sbjct: 66 TTTPALVFGKPVRVHLSQ 83
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 42.6 bits (100), Expect = 2e-06
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
V V + L F ++GNI++ + + I++ S A KA +
Sbjct: 6 WVTVFGFPQASASYILL-QFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKA-LSK 58
Query: 192 NGRMI 196
+GR+
Sbjct: 59 DGRIF 63
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 43.3 bits (101), Expect = 4e-06
Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 6/99 (6%)
Query: 133 VFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFS-YKAAEKAIIEM 191
F +L + E+L F G I + VR G I F K A +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----AKEGIILFKEKAKEALGKAKDA 68
Query: 192 NGRMIQHNSTFVSLAEIVPGKKVFPKVKPPLLQPARKNK 230
N +Q + V+ + + K Q NK
Sbjct: 69 NNGNLQLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNK 107
Score = 35.9 bits (82), Expect = 0.001
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 231 IFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMP-KHATHAVSTMNGHVF 289
F +L + LF+ G I V G I F K A N
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNL 73
Query: 290 KSKPLKVTLSGTKP 303
+ + +VT +
Sbjct: 74 QLRNKEVTWEVLEG 87
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.9 bits (100), Expect = 4e-06
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIE-VKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
V ++ L +EE+ F + + + D G+S G F+QF S + AEKA+
Sbjct: 17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK- 75
Query: 191 MNGRMIQHNSTFVSLA 206
+ I H + +
Sbjct: 76 KHKERIGHRYIEIFKS 91
Score = 34.0 bits (77), Expect = 0.005
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 225 PARKNKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIG------FIEFIMPKHAT 278
A + + LP + E + F+ + + + G F++F + A
Sbjct: 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAE 71
Query: 279 HAVSTMNGHVFKSKPLKVTLS 299
A+ + + +++ S
Sbjct: 72 KAL-KKHKERIGHRYIEIFKS 91
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.1 bits (98), Expect = 5e-06
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTM--NG 286
+ + LP + +E L FG +T+ ++ K+ F+E + A V+
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVT 68
Query: 287 HVFKSKPLKVTLSGTK 302
+++P+ + S K
Sbjct: 69 PHLRNQPIYIQYSNHK 84
Score = 32.1 bits (72), Expect = 0.019
Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+ ++ L V E E+ + + FG + + +++ +N F++ + +AA +
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN-----QAFLELATEEAAITMVNYY 64
Query: 192 NGRMIQHN 199
+
Sbjct: 65 SAVTPHLR 72
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 41.0 bits (95), Expect = 1e-05
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHV 288
N++ V+ LP + + + ++ R + V G +EF+ + T+AV ++
Sbjct: 1 NRVVVSGLPPSGSWQDLKD-HMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTK 59
Query: 289 FKSKPLKVTLSGTKP 303
F+S + K
Sbjct: 60 FRSHEGETAYIRVKV 74
Score = 37.2 bits (85), Expect = 3e-04
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+V V L + ++LK H + G++ + RD G ++F + A+ ++
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG------TGVVEFVRKEDMTYAVRKL 55
Query: 192 NGRMIQHNSTFVSLAE 207
+ + + +
Sbjct: 56 DNTKFRSHEGETAYIR 71
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 41.3 bits (96), Expect = 1e-05
Identities = 11/75 (14%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTITSSSLVSDKHIGFIEFIMPKHATHAVSTMNGHV 288
++ V+ LP + + + ++ R + V +G +E++ + +A+ ++
Sbjct: 16 FRVLVSGLPPSGSWQDLKD-HMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTK 74
Query: 289 FKSKPLKVTLSGTKP 303
F+S + + P
Sbjct: 75 FRSHEGETSYIRVYP 89
Score = 41.3 bits (96), Expect = 1e-05
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+V V L + ++LK H + G++ + +D G +++ + E A+ ++
Sbjct: 17 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG------MGMVEYLRKEDMEYALRKL 70
Query: 192 NGRMIQHNSTFVSLAEIVPGKK 213
+ + + S + P +
Sbjct: 71 DDTKFRSHEGETSYIRVYPERS 92
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 40.9 bits (95), Expect = 2e-05
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
V ++ L E ++ + F + I +G+ G ++F +++ A A +
Sbjct: 17 CVHMRGLPYRATENDIYNFFSPLNPMRVH-IEIGPDGRVTGEADVEFATHEDAVAA-MAK 74
Query: 192 NGRMIQHNSTFVSLA 206
+ +QH + L
Sbjct: 75 DKANMQHRYVELFLN 89
Score = 37.4 bits (86), Expect = 3e-04
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 223 LQPARKNKIFVANLPSNINNSEFEELFARFGTITSSSLV----SDKHIGFIEFIMPKHAT 278
Q + + + LP ++ F+ + + +EF + A
Sbjct: 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAV 69
Query: 279 HAVSTMNGHVFKSKPLKVTLSGTKP 303
A++ + + + +++ L+ T
Sbjct: 70 AAMA-KDKANMQHRYVELFLNSTAG 93
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 40.5 bits (94), Expect = 2e-05
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 229 NKIFVANL-PSNINNSEFEELFARFGTITSSSLVSD-KHIGFIEFIMPKHATHAVSTMNG 286
+ + V+NL P + LF +G + ++ + K ++ A A+S +NG
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 62
Query: 287 HVFKSKPLKVTLS 299
H KP+++TLS
Sbjct: 63 HKLHGKPIRITLS 75
Score = 39.4 bits (91), Expect = 7e-05
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 132 KVFVKNLV-ETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIE 190
+ V NL E V + L F +G++ VKI+ ++ +Q A+ A+
Sbjct: 4 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE----NALVQMADGNQAQLAMSH 59
Query: 191 MNGRMIQHNSTFVSLAE 207
+NG + ++L++
Sbjct: 60 LNGHKLHGKPIRITLSK 76
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 39.1 bits (90), Expect = 4e-05
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 230 KIFVANLPSNINNSEFEELFARFGTITSSSLVSD----KHIGFIEFIMPKHATHAVSTMN 285
+ V NLP + N ++ + F G I + IEF A A+ T
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKT 60
Query: 286 GHVFKSKPLKVT 297
V + V+
Sbjct: 61 HKVVGQNEIIVS 72
Score = 38.7 bits (89), Expect = 7e-05
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAII-- 189
V VKNL ++ ++ ++ +F G II V + + F I+F Y A AI
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR-FARIEFARYDGALAAITKT 60
Query: 190 --EMNGRMI 196
+ I
Sbjct: 61 HKVVGQNEI 69
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 37.1 bits (85), Expect = 2e-04
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 229 NKIFVANLPSNINNSEFEELFARFGTIT-SSSLVSDKHIGFIEFIMPKHATHAVSTMNGH 287
+F+ NLP N LF +F + + I F+EF + A + G
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGF 68
Query: 288 VF-KSKPLKVTLS 299
+ +K+T +
Sbjct: 69 KITPTHAMKITFA 81
Score = 32.5 bits (73), Expect = 0.012
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 132 KVFVKNLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFSYKAAEKAIIEM 191
+F+ NL E +E L F +F EV++V + + F++F + + A +
Sbjct: 10 ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD----IAFVEFTTELQSNAAKEAL 65
Query: 192 NGRMIQHN 199
G I
Sbjct: 66 QGFKITPT 73
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 30.2 bits (67), Expect = 0.10
Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 21 GARSNKENNKVYKENELHVNNLEPSVDNQALINEFKKFGTLRDVRVAR-NKNDESRGFAI 79
G + ++ + +++ L +N+ +I+ FKK + D N ++ G
Sbjct: 5 GQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGF 64
Query: 80 IVFNTPAEAKKARVEMNGHLIGSKPV 105
+ F A+ K A + + +G++ +
Sbjct: 65 VEFRNEADYKAA-LCRHKQYMGNRFI 89
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 201
Score = 30.1 bits (68), Expect = 0.27
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 137 NLVETVDEEELKSHFIKFGNIIEVKIVRDENGKSKGFGFIQFFS 180
+L + +EE++ F NII+ +V + NG+ F+ F++
Sbjct: 66 HLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVT--DFLSFYT 107
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 227
Score = 26.7 bits (59), Expect = 3.8
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 137 NLVETVDEEELKSHF-----IKFGNIIEVKIVRDENGKSKGFGFIQFFS 180
++V+ EEE K N+++ +V DENG + ++
Sbjct: 66 DIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVEDENGIIT--DYFSYYL 112
>d2auaa1 d.166.1.6 (A:2-195) Hypothetical protein BC2332 {Bacillus
cereus [TaxId: 1396]}
Length = 194
Score = 25.6 bits (56), Expect = 6.4
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 16/70 (22%)
Query: 32 YKENELHVNN---------LEPSVDNQALINEFKKFGTLRDVRVARNKNDESRGFAIIVF 82
YK +ELH+NN ++ ++ E + VR+ SR +
Sbjct: 57 YKNDELHINNENAKVVISYMDQTIR---AARET----IVEMVRLQEFPEYPSRLSCLYAA 109
Query: 83 NTPAEAKKAR 92
+ +A K +
Sbjct: 110 KSYEDALKWK 119
>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 112
Score = 25.0 bits (54), Expect = 7.8
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 156 NIIEVKIVRDENGKSKGFGF 175
N+I V++ + + G G GF
Sbjct: 1 NVISVRLFKRKVG---GLGF 17
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.372
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,226,414
Number of extensions: 58611
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 347
Number of HSP's successfully gapped: 245
Length of query: 333
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,226,816
Effective search space: 303023552
Effective search space used: 303023552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.8 bits)