BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8958
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JWY|B Chain B, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|B Chain B, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 315
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 1 MTRSPVKVTLSEGPYHVAQFKDSSREFD--LTKESDLV----ELRKEVERRMMNSVRKGK 54
+TR P+ + L+ P +A ++E+ L K +D+ E+R+E+ R K K
Sbjct: 57 VTRRPLILQLTHLP--IADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNK 114
Query: 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILC 114
+S + I++ + P + + LVDLPGI D +D IR+M ++ NAII+
Sbjct: 115 GISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVA 174
Query: 115 IQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
+ + D S+ L ++DP+GKRTI V+TK+
Sbjct: 175 VTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208
>pdb|3L43|A Chain A, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|B Chain B, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|C Chain C, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
pdb|3L43|D Chain D, Crystal Structure Of The Dynamin 3 Gtpase Domain Bound
With Gdp
Length = 319
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
+TR P+ + L A+F + K +D E+R E+E K +S+
Sbjct: 77 VTRRPLVLQLITSKAEYAEFLHCKGK----KFTDFDEVRLEIEAETDRVTGMNKGISSIP 132
Query: 61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
I++ V P + + L+DLPGI D D IR+M ++ N +IL + +
Sbjct: 133 INLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTPANT 192
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
D S+ L ++DPQG RTI V+TK+
Sbjct: 193 DLANSDALKLAKEVDPQGLRTIGVITKL 220
>pdb|3T34|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T34|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a (Atdrp1a)
In Prefission State
pdb|3T35|A Chain A, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|B Chain B, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|C Chain C, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
pdb|3T35|D Chain D, Arabidopsis Thaliana Dynamin-Related Protein 1a In
Postfission State
Length = 360
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 1 MTRSPVKVTL---SEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVS 57
+TR P+ + L +G A+F R+ K +D +RKE++ + K +S
Sbjct: 67 VTRRPLVLQLQKIDDGTREYAEFLHLPRK----KFTDFAAVRKEIQDETDRETGRSKAIS 122
Query: 58 NEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQD 117
+ I +S+ P + + L+DLPG+ + + I M ++++ PN IIL I
Sbjct: 123 SVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISP 182
Query: 118 GSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148
+ D S+ + ++DP G RT VLTK+
Sbjct: 183 ANQDLATSDAIKISREVDPSGDRTFGVLTKI 213
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
+TR P+ + L A+F + K +D E+R E+E K +S
Sbjct: 64 VTRRPLVLQLVNATTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 119
Query: 61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
I++ V P + + LVDLPG+ D D IR M ++ N +IL + +
Sbjct: 120 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 179
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
D S+ + ++DPQG+RTI V+TK+
Sbjct: 180 DLANSDALKVAKEVDPQGQRTIGVITKL 207
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
+TR P+ + L A+F + K +D E+R E+E K +S
Sbjct: 59 VTRRPLVLQLVNSTTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 114
Query: 61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
I++ V P + + LVDLPG+ D D IR M ++ N +IL + +
Sbjct: 115 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 174
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
D S+ + ++DPQG+RTI V+TK+
Sbjct: 175 DLANSDALKIAKEVDPQGQRTIGVITKL 202
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
+TR P+ + L A+F + K +D E+R E+E K +S
Sbjct: 61 VTRRPLVLQLVNATTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 116
Query: 61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
I++ V P + + LVDLPG+ D D IR M ++ N +IL + +
Sbjct: 117 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 176
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
D S+ + ++DPQG+RTI V+TK+
Sbjct: 177 DLANSDALKVAKEVDPQGQRTIGVITKL 204
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 4/148 (2%)
Query: 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
+TR P+ + L A+F + K +D E+R E+E K +S
Sbjct: 84 VTRRPLVLQLVNSTTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 139
Query: 61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
I++ V P + + LVDLPG+ D D IR M ++ N +IL + +
Sbjct: 140 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 199
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
D S+ + ++DPQG+RTI V+TK+
Sbjct: 200 DLANSDALKIAKEVDPQGQRTIGVITKL 227
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 4/148 (2%)
Query: 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
+TR P+ + L A+F + K +D E+R E+E K +S
Sbjct: 64 VTRRPLVLQLVNATTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 119
Query: 61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
I++ V P + + LVDLPG D D IR ++ N +IL + +
Sbjct: 120 INLRVYSPHVLNLTLVDLPGXTKVPVGDQPPDIEFQIRDXLXQFVTKENCLILAVSPANS 179
Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKV 148
D S+ + ++DPQG+RTI V+TK+
Sbjct: 180 DLANSDALKVAKEVDPQGQRTIGVITKL 207
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%)
Query: 33 SDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASD 92
SD E+ KE+ + +G +S+E+I++ + + + L+DLPGI + + +D
Sbjct: 109 SDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPAD 168
Query: 93 TRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTK 147
I+ + + ++ I L + +VD + + ++DP+G RTI +LTK
Sbjct: 169 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 223
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%)
Query: 33 SDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASD 92
SD E+ KE+ + +G +S+E+I++ + + + L+DLPGI + + +D
Sbjct: 134 SDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPAD 193
Query: 93 TRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTK 147
I+ + + ++ I L + +VD + + ++DP+G RTI +LTK
Sbjct: 194 IGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTK 248
>pdb|3O4B|A Chain A, Crystal Structure Of Symfoil-4t: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
Length = 142
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNV-TDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R T + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 34 DGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 83
>pdb|3SNV|A Chain A, Crystal Structure Of Symfoil-4t Permutation #1: De Novo
Designed Beta- Trefoil Architecture With Symmetric
Primary Structure
pdb|3SNV|B Chain B, Crystal Structure Of Symfoil-4t Permutation #1: De Novo
Designed Beta- Trefoil Architecture With Symmetric
Primary Structure
Length = 143
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNV-TDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R T + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 27 DGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 76
>pdb|3P6J|A Chain A, Crystal Structure Of Symfoil-4t Permutation #3: De Novo
Designed Beta- Trefoil Architecture With Symmetric
Primary Structure
Length = 142
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNV-TDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R T + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 91 DGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 140
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 133 QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 24 QISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 56
>pdb|4D8H|A Chain A, Crystal Structure Of F22l/f44l/f64l/f85l/f108l/f132l
Hissymfoil-4p/pv1 (6xleu Pv1) De Novo Designed
Beta-trefoil Enriched For Pre-biotic Amino Acids
Length = 132
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P+G + + + + QL+RI DG+VD R
Sbjct: 24 DGTVDGTRDRSDPGIQLQISPEGNGEVLLRSTETGQLLRINPDGTVDGTR 73
>pdb|3O4C|A Chain A, Crystal Structure Of Symfoil-4v: De Novo Designed
Beta-trefoil Architecture With Symmetric Primary
Structure
Length = 142
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 117 DGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD +RS+V + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 34 DGTVDGTRDRSDV-HIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 83
>pdb|3O4D|A Chain A, Crystal Structure Of Symfoil-4p: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
Length = 142
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 34 DGTVDGTRDRSDPHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 83
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 76 DGTVDGTRDRSDPHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 125
>pdb|3OGF|A Chain A, Crystal Structure Of Difoil-4p Homo-trimer: De Novo
Designed Dimeric Trefoil-fold Sub-domain Which Forms
Homo-trimer Assembly
pdb|3OGF|B Chain B, Crystal Structure Of Difoil-4p Homo-trimer: De Novo
Designed Dimeric Trefoil-fold Sub-domain Which Forms
Homo-trimer Assembly
pdb|3OGF|C Chain C, Crystal Structure Of Difoil-4p Homo-trimer: De Novo
Designed Dimeric Trefoil-fold Sub-domain Which Forms
Homo-trimer Assembly
Length = 90
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 24 DGTVDGTRDRSDPHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 73
>pdb|3O4A|A Chain A, Crystal Structure Of Symfoil-2: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
pdb|3O4A|B Chain B, Crystal Structure Of Symfoil-2: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
pdb|3O4A|C Chain C, Crystal Structure Of Symfoil-2: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
pdb|3O4A|D Chain D, Crystal Structure Of Symfoil-2: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
Length = 142
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 34 DGTVDGTRDRSDQHIQFQISPEGGGEVLLKSTETGQYLRINPDGTVDGTR 83
>pdb|3Q7W|A Chain A, Crystal Structure Of Symfoil-4p/pv1: De Novo Designed
Beta-trefoil Architecture With Symmetric Primary
Structure, Primitive Version 1
pdb|3Q7X|A Chain A, Crystal Structure Of Symfoil-4p/pv1: De Novo Designed
Beta-trefoil Architecture With Symmetric Primary
Structure, Primitive Version 1
Length = 132
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 24 DGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTR 73
>pdb|3O49|A Chain A, Crystal Structure Of Symfoil-1: De Novo Designed
Beta-Trefoil Architecture With Symmetric Primary
Structure
Length = 142
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 34 DGTVDGTRDRSDQHIQFQVSPEGGGEVLLKSTETGQYLRINPDGTVDGTR 83
>pdb|3P6I|A Chain A, Crystal Structure Of Symfoil-4t Permutation #2: De Novo
Designed Beta- Trefoil Architecture With Symmetric
Primary Structure
Length = 142
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 118 GSVDAERSNV-TDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
G+VD R T + Q+ P+G + + + + Q +RI DG+VD R
Sbjct: 18 GTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTR 66
>pdb|3Q7Y|A Chain A, Crystal Structure Of Symfoil-4p/pv2: De Novo Designed
Beta-trefoil Architecture With Symmetric Primary
Structure, Primitive Version 2
Length = 132
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P G + + + + Q +RI DG+VD R
Sbjct: 24 DGTVDGTRDRSDPGIQWQISPDGNGPVLLRSTDTGQWLRINPDGTVDGTR 73
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 117 DGSVDAERSNVTDLVS-QMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAER 165
DG+VD R + Q+ P G + + + + Q +RI DG+VD R
Sbjct: 66 DGTVDGTRDRSDPGIQWQISPDGNGPVLLRSTDTGQWLRINPDGTVDGTR 115
>pdb|3AE0|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Geranylgeranyl Thiopyrophosphate
pdb|3AE0|B Chain B, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene
Synthase From Staphylococcus Aureus Complexed With
Geranylgeranyl Thiopyrophosphate
Length = 293
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 173 SVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIK 232
++MD+ K+ ++ K S+ S + L P Q+ + + VC ++D + + + D Q +
Sbjct: 8 TMMDMNFKYCHKIMKKHSKSFSYAADLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLN 67
Query: 233 KI 234
+I
Sbjct: 68 QI 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,720,621
Number of Sequences: 62578
Number of extensions: 280816
Number of successful extensions: 892
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 53
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)