Query psy8958
Match_columns 294
No_of_seqs 215 out of 854
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:55:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 100.0 1.2E-29 4E-34 257.1 14.0 217 1-294 77-298 (608)
2 3t34_A Dynamin-related protein 100.0 1.4E-28 4.7E-33 232.3 17.7 203 1-283 67-275 (360)
3 3zvr_A Dynamin-1; hydrolase, D 99.9 5.8E-27 2E-31 243.4 19.2 202 1-282 84-288 (772)
4 2x2e_A Dynamin-1; nitration, h 99.9 3.5E-26 1.2E-30 215.9 18.6 203 1-283 64-269 (353)
5 2aka_B Dynamin-1; fusion prote 99.8 8.6E-20 2.9E-24 165.1 20.6 203 1-283 59-264 (299)
6 1jwy_B Dynamin A GTPase domain 99.8 1.5E-19 5.2E-24 165.2 13.8 202 1-282 57-269 (315)
7 2j69_A Bacterial dynamin-like 97.7 1.7E-05 5.9E-10 81.4 4.7 87 54-151 154-243 (695)
8 4dhe_A Probable GTP-binding pr 97.3 0.00093 3.2E-08 56.7 8.6 91 55-151 63-157 (223)
9 3t5d_A Septin-7; GTP-binding p 96.5 0.0088 3E-07 53.5 8.9 94 56-151 49-157 (274)
10 3lxx_A GTPase IMAP family memb 96.5 0.0047 1.6E-07 53.7 6.9 79 71-151 78-158 (239)
11 2xtp_A GTPase IMAP family memb 96.5 0.0052 1.8E-07 54.0 7.1 79 71-151 71-152 (260)
12 1svi_A GTP-binding protein YSX 96.4 0.0045 1.6E-07 51.0 5.8 73 72-150 70-146 (195)
13 3iev_A GTP-binding protein ERA 96.3 0.012 4.1E-07 54.0 8.5 91 55-151 43-135 (308)
14 3iby_A Ferrous iron transport 96.1 0.013 4.3E-07 52.5 7.4 73 72-151 49-123 (256)
15 3pqc_A Probable GTP-binding pr 96.0 0.01 3.6E-07 48.4 5.9 73 72-150 69-145 (195)
16 2qpt_A EH domain-containing pr 95.7 0.004 1.4E-07 62.2 2.7 91 56-151 139-231 (550)
17 1wf3_A GTP-binding protein; GT 95.7 0.04 1.4E-06 50.6 9.0 75 70-151 54-130 (301)
18 4dcu_A GTP-binding protein ENG 95.7 0.015 5.2E-07 56.1 6.3 91 53-151 54-144 (456)
19 2dyk_A GTP-binding protein; GT 95.6 0.026 9E-07 44.5 6.7 71 72-151 50-121 (161)
20 1h65_A Chloroplast outer envel 94.7 0.048 1.6E-06 48.5 6.2 84 59-150 76-166 (270)
21 1ky3_A GTP-binding protein YPT 94.6 0.035 1.2E-06 44.5 4.7 76 62-150 49-130 (182)
22 2yc2_C IFT27, small RAB-relate 94.5 0.075 2.6E-06 43.8 6.5 69 70-151 72-145 (208)
23 3i8s_A Ferrous iron transport 94.4 0.055 1.9E-06 48.6 6.0 89 55-151 35-125 (274)
24 2hjg_A GTP-binding protein ENG 94.3 0.064 2.2E-06 51.4 6.5 89 55-151 36-124 (436)
25 1ksh_A ARF-like protein 2; sma 94.1 0.076 2.6E-06 43.2 5.7 68 70-150 61-131 (186)
26 1r8s_A ADP-ribosylation factor 94.1 0.069 2.4E-06 42.2 5.3 68 70-150 43-113 (164)
27 1upt_A ARL1, ADP-ribosylation 94.1 0.071 2.4E-06 42.4 5.3 68 70-150 50-120 (171)
28 2fg5_A RAB-22B, RAS-related pr 94.0 0.3 1E-05 40.2 9.3 68 70-150 71-140 (192)
29 2g6b_A RAS-related protein RAB 94.0 0.049 1.7E-06 43.8 4.3 68 71-151 60-129 (180)
30 2cxx_A Probable GTP-binding pr 94.0 0.1 3.4E-06 42.3 6.2 88 55-150 33-134 (190)
31 1z0j_A RAB-22, RAS-related pro 94.0 0.044 1.5E-06 43.4 3.9 69 70-151 54-124 (170)
32 1mky_A Probable GTP-binding pr 93.9 0.054 1.8E-06 51.9 5.1 89 54-151 33-123 (439)
33 3def_A T7I23.11 protein; chlor 93.9 0.088 3E-06 46.6 6.1 82 61-150 75-163 (262)
34 2fh5_B SR-beta, signal recogni 93.9 0.14 4.7E-06 42.8 7.0 79 60-151 43-128 (214)
35 2f7s_A C25KG, RAS-related prot 93.8 0.11 3.8E-06 43.5 6.2 67 70-150 83-153 (217)
36 3bc1_A RAS-related protein RAB 93.7 0.079 2.7E-06 42.8 5.1 66 71-150 70-139 (195)
37 4dcu_A GTP-binding protein ENG 93.7 0.036 1.2E-06 53.4 3.4 76 72-151 244-319 (456)
38 1kao_A RAP2A; GTP-binding prot 93.7 0.044 1.5E-06 43.1 3.3 67 71-150 51-120 (167)
39 1z08_A RAS-related protein RAB 93.6 0.04 1.4E-06 43.8 3.1 68 71-151 55-124 (170)
40 3a1s_A Iron(II) transport prot 93.6 0.13 4.6E-06 45.8 6.8 70 71-151 52-123 (258)
41 1zj6_A ADP-ribosylation factor 93.5 0.07 2.4E-06 43.7 4.5 67 71-150 60-129 (187)
42 1u8z_A RAS-related protein RAL 93.5 0.074 2.5E-06 41.8 4.5 67 71-150 52-121 (168)
43 1zd9_A ADP-ribosylation factor 93.4 0.065 2.2E-06 44.2 4.1 68 70-150 66-136 (188)
44 2h17_A ADP-ribosylation factor 93.3 0.05 1.7E-06 44.4 3.2 67 71-150 65-134 (181)
45 2bme_A RAB4A, RAS-related prot 93.3 0.096 3.3E-06 42.4 4.9 67 71-150 59-127 (186)
46 1z06_A RAS-related protein RAB 93.0 0.13 4.4E-06 42.2 5.4 67 71-150 69-139 (189)
47 1z0f_A RAB14, member RAS oncog 93.0 0.069 2.4E-06 42.6 3.6 67 71-150 64-132 (179)
48 2il1_A RAB12; G-protein, GDP, 93.0 0.065 2.2E-06 44.4 3.5 67 71-150 75-143 (192)
49 3cph_A RAS-related protein SEC 92.9 0.052 1.8E-06 45.1 2.8 67 71-150 69-137 (213)
50 4bas_A ADP-ribosylation factor 92.9 0.088 3E-06 43.1 4.1 69 69-150 61-139 (199)
51 1g16_A RAS-related protein SEC 92.8 0.036 1.2E-06 44.0 1.6 67 71-150 52-120 (170)
52 3j2k_7 ERF3, eukaryotic polype 92.8 0.23 8E-06 47.8 7.5 80 54-150 79-167 (439)
53 1zbd_A Rabphilin-3A; G protein 92.8 0.11 3.8E-06 42.9 4.6 68 70-150 56-125 (203)
54 2gj8_A MNME, tRNA modification 92.8 0.66 2.3E-05 37.7 9.3 74 72-151 53-128 (172)
55 3tkl_A RAS-related protein RAB 92.8 0.057 1.9E-06 44.2 2.8 67 71-150 65-133 (196)
56 2x77_A ADP-ribosylation factor 92.8 0.1 3.5E-06 42.7 4.3 68 70-150 65-135 (189)
57 1ek0_A Protein (GTP-binding pr 92.7 0.087 3E-06 41.5 3.8 68 70-151 51-121 (170)
58 1wms_A RAB-9, RAB9, RAS-relate 92.7 0.13 4.6E-06 41.1 4.9 67 71-150 56-128 (177)
59 3lxw_A GTPase IMAP family memb 92.7 0.1 3.6E-06 45.9 4.6 92 57-150 57-151 (247)
60 2qu8_A Putative nucleolar GTP- 92.7 0.28 9.7E-06 41.8 7.2 76 70-150 75-154 (228)
61 2a9k_A RAS-related protein RAL 92.6 0.071 2.4E-06 42.9 3.2 68 71-151 66-136 (187)
62 2oil_A CATX-8, RAS-related pro 92.6 0.18 6E-06 41.4 5.6 68 70-151 73-143 (193)
63 1nrj_B SR-beta, signal recogni 92.6 0.081 2.8E-06 44.4 3.6 69 69-151 53-133 (218)
64 2p5s_A RAS and EF-hand domain 92.5 0.064 2.2E-06 44.6 2.8 68 71-151 77-146 (199)
65 2b6h_A ADP-ribosylation factor 92.5 0.079 2.7E-06 44.1 3.4 68 70-150 72-142 (192)
66 3qq5_A Small GTP-binding prote 92.5 0.3 1E-05 47.3 7.8 85 57-151 69-153 (423)
67 1mh1_A RAC1; GTP-binding, GTPa 92.5 0.098 3.3E-06 42.1 3.8 67 71-151 53-122 (186)
68 2h57_A ADP-ribosylation factor 92.5 0.07 2.4E-06 43.8 2.9 67 71-150 67-138 (190)
69 3p26_A Elongation factor 1 alp 92.5 0.18 6E-06 49.1 6.3 82 54-151 95-184 (483)
70 3dz8_A RAS-related protein RAB 92.4 0.092 3.2E-06 43.2 3.6 76 61-150 63-140 (191)
71 2o52_A RAS-related protein RAB 92.4 0.13 4.5E-06 42.9 4.6 67 71-150 74-142 (200)
72 2y8e_A RAB-protein 6, GH09086P 92.4 0.057 1.9E-06 43.2 2.2 68 71-151 63-132 (179)
73 2ew1_A RAS-related protein RAB 92.3 0.16 5.4E-06 43.0 5.1 68 71-151 75-144 (201)
74 3con_A GTPase NRAS; structural 92.2 0.14 4.8E-06 41.7 4.5 67 71-150 69-138 (190)
75 2fu5_C RAS-related protein RAB 92.0 0.16 5.5E-06 41.0 4.5 67 71-150 57-125 (183)
76 2lkc_A Translation initiation 91.9 0.083 2.8E-06 42.4 2.7 65 71-150 55-119 (178)
77 2a5j_A RAS-related protein RAB 91.9 0.075 2.6E-06 43.8 2.4 67 71-150 70-138 (191)
78 4dsu_A GTPase KRAS, isoform 2B 91.9 0.082 2.8E-06 42.7 2.6 68 70-150 51-121 (189)
79 1moz_A ARL1, ADP-ribosylation 91.8 0.092 3.1E-06 42.4 2.9 67 71-150 62-131 (183)
80 3l0i_B RAS-related protein RAB 91.8 0.037 1.3E-06 46.1 0.5 67 71-150 82-150 (199)
81 1vma_A Cell division protein F 91.7 0.11 3.7E-06 48.2 3.6 73 69-150 185-261 (306)
82 1c1y_A RAS-related protein RAP 91.7 0.16 5.4E-06 40.0 4.1 67 71-150 51-120 (167)
83 2efe_B Small GTP-binding prote 91.7 0.13 4.3E-06 41.4 3.6 66 71-150 61-129 (181)
84 2fn4_A P23, RAS-related protei 91.6 0.061 2.1E-06 43.0 1.6 68 71-151 57-127 (181)
85 2ce2_X GTPase HRAS; signaling 91.6 0.23 7.7E-06 38.7 4.9 68 70-150 50-120 (166)
86 2c78_A Elongation factor TU-A; 91.5 0.7 2.4E-05 43.6 9.1 78 57-151 62-141 (405)
87 2gf9_A RAS-related protein RAB 91.4 0.27 9.4E-06 40.1 5.4 68 70-150 70-139 (189)
88 2hup_A RAS-related protein RAB 91.3 0.24 8.2E-06 41.4 5.1 67 71-150 78-146 (201)
89 3b1v_A Ferrous iron uptake tra 91.3 0.41 1.4E-05 43.1 7.0 84 55-151 35-120 (272)
90 3clv_A RAB5 protein, putative; 91.3 0.089 3E-06 42.6 2.2 63 71-149 93-158 (208)
91 3kl4_A SRP54, signal recogniti 91.0 0.25 8.6E-06 48.1 5.5 73 69-150 178-250 (433)
92 2qtf_A Protein HFLX, GTP-bindi 91.0 0.77 2.6E-05 43.3 8.7 74 71-150 226-304 (364)
93 1z2a_A RAS-related protein RAB 90.9 0.095 3.2E-06 41.4 2.0 68 70-151 53-122 (168)
94 2atx_A Small GTP binding prote 90.8 0.3 1E-05 40.0 5.1 67 71-151 66-135 (194)
95 3k53_A Ferrous iron transport 90.8 0.31 1.1E-05 43.2 5.5 69 72-151 51-122 (271)
96 3dm5_A SRP54, signal recogniti 90.7 0.3 1E-05 47.8 5.7 71 70-151 182-252 (443)
97 2bcg_Y Protein YP2, GTP-bindin 90.6 0.12 4.2E-06 42.9 2.6 66 71-150 57-125 (206)
98 3bwd_D RAC-like GTP-binding pr 90.6 0.34 1.2E-05 38.8 5.2 68 70-151 55-125 (182)
99 2q3h_A RAS homolog gene family 90.5 0.17 5.8E-06 41.7 3.3 67 71-151 68-137 (201)
100 3gee_A MNME, tRNA modification 90.5 0.28 9.7E-06 48.0 5.4 72 71-151 281-356 (476)
101 1f6b_A SAR1; gtpases, N-termin 90.4 0.23 7.8E-06 41.5 4.1 73 62-150 63-138 (198)
102 2hxs_A RAB-26, RAS-related pro 90.4 0.21 7.3E-06 39.9 3.8 76 63-151 48-128 (178)
103 1kk1_A EIF2gamma; initiation o 90.4 0.52 1.8E-05 44.5 7.0 65 71-151 83-150 (410)
104 3izq_1 HBS1P, elongation facto 90.4 0.48 1.7E-05 47.8 7.1 81 55-151 230-318 (611)
105 4gzl_A RAS-related C3 botulinu 90.4 0.19 6.5E-06 42.1 3.6 67 71-151 78-147 (204)
106 2bov_A RAla, RAS-related prote 90.1 0.16 5.6E-06 41.7 2.9 67 71-150 62-131 (206)
107 2qag_B Septin-6, protein NEDD5 90.0 0.49 1.7E-05 46.1 6.6 90 60-151 83-189 (427)
108 3tr5_A RF-3, peptide chain rel 90.0 0.47 1.6E-05 47.1 6.5 76 56-150 70-146 (528)
109 4djt_A GTP-binding nuclear pro 89.9 0.095 3.2E-06 44.0 1.3 67 71-150 61-129 (218)
110 3t1o_A Gliding protein MGLA; G 89.9 0.64 2.2E-05 37.5 6.3 67 71-150 74-147 (198)
111 2wji_A Ferrous iron transport 89.8 0.47 1.6E-05 38.1 5.4 69 71-151 50-121 (165)
112 3sjy_A Translation initiation 89.8 0.38 1.3E-05 45.5 5.5 66 71-151 75-142 (403)
113 2erx_A GTP-binding protein DI- 89.8 0.28 9.7E-06 38.6 4.0 68 71-151 51-122 (172)
114 2hjg_A GTP-binding protein ENG 89.7 0.12 4.2E-06 49.4 2.0 76 72-151 224-299 (436)
115 1d2e_A Elongation factor TU (E 89.7 1.3 4.5E-05 41.7 9.2 73 62-151 58-132 (397)
116 2fv8_A H6, RHO-related GTP-bin 89.7 0.24 8.1E-06 41.4 3.6 67 71-151 73-142 (207)
117 1x3s_A RAS-related protein RAB 89.7 0.15 5.2E-06 41.4 2.3 67 70-150 63-133 (195)
118 3llu_A RAS-related GTP-binding 89.5 0.78 2.7E-05 37.8 6.7 84 54-151 52-142 (196)
119 3cpj_B GTP-binding protein YPT 89.4 0.18 6.2E-06 42.7 2.7 67 71-151 62-131 (223)
120 1f60_A Elongation factor EEF1A 89.4 0.56 1.9E-05 45.3 6.5 71 63-151 78-158 (458)
121 2gco_A H9, RHO-related GTP-bin 89.3 0.12 4.1E-06 43.1 1.5 67 71-151 73-142 (201)
122 1m2o_B GTP-binding protein SAR 89.3 0.47 1.6E-05 39.2 5.1 67 71-150 67-136 (190)
123 3oes_A GTPase rhebl1; small GT 89.2 0.3 1E-05 40.5 3.9 69 69-151 70-142 (201)
124 1r2q_A RAS-related protein RAB 89.1 0.32 1.1E-05 38.2 3.8 68 70-150 54-123 (170)
125 2elf_A Protein translation elo 88.9 1 3.5E-05 42.4 7.7 77 55-150 45-125 (370)
126 3q72_A GTP-binding protein RAD 88.8 0.45 1.5E-05 37.5 4.4 68 70-150 48-118 (166)
127 1fzq_A ADP-ribosylation factor 88.6 0.57 1.9E-05 38.3 5.1 68 70-150 59-129 (181)
128 1g7s_A Translation initiation 88.6 0.44 1.5E-05 48.0 5.3 63 71-150 70-134 (594)
129 3kkq_A RAS-related protein M-R 88.4 0.15 5E-06 41.3 1.3 68 70-150 65-135 (183)
130 1s0u_A EIF-2-gamma, translatio 88.3 1 3.5E-05 42.5 7.4 65 71-151 81-148 (408)
131 3reg_A RHO-like small GTPase; 88.3 0.32 1.1E-05 39.9 3.4 67 70-150 70-139 (194)
132 2j1l_A RHO-related GTP-binding 88.2 0.41 1.4E-05 40.4 4.1 67 71-151 82-151 (214)
133 3t5g_A GTP-binding protein RHE 88.2 0.51 1.8E-05 37.9 4.5 67 71-150 54-123 (181)
134 2ged_A SR-beta, signal recogni 88.0 0.81 2.8E-05 37.2 5.7 72 70-151 90-169 (193)
135 1vg8_A RAS-related protein RAB 88.0 0.14 4.8E-06 42.3 1.0 66 71-150 57-129 (207)
136 1zun_B Sulfate adenylate trans 87.8 0.88 3E-05 43.4 6.6 79 55-151 89-170 (434)
137 2wjg_A FEOB, ferrous iron tran 87.8 1.1 3.9E-05 36.0 6.4 69 71-151 54-125 (188)
138 1xzp_A Probable tRNA modificat 87.6 1.3 4.4E-05 43.5 7.7 70 71-151 291-363 (482)
139 2v3c_C SRP54, signal recogniti 87.5 0.96 3.3E-05 43.8 6.7 72 69-151 179-251 (432)
140 3o47_A ADP-ribosylation factor 87.3 0.38 1.3E-05 44.3 3.6 67 71-150 209-278 (329)
141 2h5e_A Peptide chain release f 87.3 0.91 3.1E-05 45.0 6.6 65 71-151 82-147 (529)
142 2atv_A RERG, RAS-like estrogen 87.3 0.63 2.1E-05 38.3 4.6 68 70-151 75-145 (196)
143 2nzj_A GTP-binding protein REM 87.2 0.88 3E-05 36.0 5.3 69 71-150 52-123 (175)
144 2j0v_A RAC-like GTP-binding pr 87.1 0.67 2.3E-05 38.5 4.8 67 71-151 57-126 (212)
145 3r7w_A Gtpase1, GTP-binding pr 86.9 1.2 4.2E-05 40.3 6.8 73 70-151 51-128 (307)
146 3tw8_B RAS-related protein RAB 86.8 0.32 1.1E-05 38.7 2.4 65 71-150 58-125 (181)
147 2wkq_A NPH1-1, RAS-related C3 86.7 0.74 2.5E-05 40.8 5.1 67 71-151 203-272 (332)
148 1wb1_A Translation elongation 86.5 0.69 2.4E-05 45.1 5.1 64 71-151 73-138 (482)
149 2j37_W Signal recognition part 85.9 0.53 1.8E-05 46.7 4.0 71 69-151 182-253 (504)
150 1ega_A Protein (GTP-binding pr 85.8 0.39 1.3E-05 43.7 2.8 74 71-151 56-129 (301)
151 1m7b_A RND3/RHOE small GTP-bin 85.7 1 3.4E-05 36.6 5.0 68 70-151 54-124 (184)
152 2ywe_A GTP-binding protein LEP 85.5 1.6 5.6E-05 44.1 7.4 80 55-151 55-138 (600)
153 1jny_A EF-1-alpha, elongation 85.5 1.3 4.3E-05 42.4 6.3 72 63-151 77-157 (435)
154 2rdo_7 EF-G, elongation factor 85.4 1.3 4.4E-05 45.4 6.7 64 71-151 82-147 (704)
155 2xex_A Elongation factor G; GT 85.2 0.57 1.9E-05 47.9 3.9 65 71-151 75-140 (693)
156 2gf0_A GTP-binding protein DI- 85.1 0.32 1.1E-05 39.6 1.7 67 71-150 56-126 (199)
157 1dar_A EF-G, elongation factor 85.0 0.73 2.5E-05 47.1 4.6 65 71-151 77-142 (691)
158 2qag_A Septin-2, protein NEDD5 84.9 0.64 2.2E-05 43.5 3.9 79 71-151 95-187 (361)
159 3t34_A Dynamin-related protein 84.4 2.7 9.2E-05 38.7 7.8 99 180-282 251-353 (360)
160 1gwn_A RHO-related GTP-binding 83.9 1.3 4.4E-05 37.2 5.0 68 70-151 75-145 (205)
161 3th5_A RAS-related C3 botulinu 84.3 0.21 7.2E-06 41.5 0.0 67 71-151 78-147 (204)
162 3q3j_B RHO-related GTP-binding 83.7 1.3 4.3E-05 37.4 4.8 67 71-151 75-144 (214)
163 3izy_P Translation initiation 83.5 0.51 1.8E-05 47.1 2.7 67 68-151 49-117 (537)
164 1lnz_A SPO0B-associated GTP-bi 83.5 0.48 1.7E-05 44.4 2.3 80 65-151 200-287 (342)
165 1yrb_A ATP(GTP)binding protein 83.4 0.99 3.4E-05 38.9 4.2 71 71-150 109-183 (262)
166 1j8m_F SRP54, signal recogniti 83.3 2.2 7.6E-05 38.9 6.7 73 69-150 179-251 (297)
167 3cb4_D GTP-binding protein LEP 83.1 1.7 5.8E-05 43.9 6.3 80 55-151 53-136 (599)
168 2e87_A Hypothetical protein PH 82.3 4.3 0.00015 37.4 8.3 74 71-150 214-292 (357)
169 3lvq_E ARF-GAP with SH3 domain 82.1 1.1 3.8E-05 43.0 4.4 72 64-150 360-435 (497)
170 3q85_A GTP-binding protein REM 82.0 1.2 4.1E-05 35.0 3.9 68 71-150 51-121 (169)
171 1r5b_A Eukaryotic peptide chai 81.6 0.84 2.9E-05 44.2 3.3 64 71-151 121-194 (467)
172 2ffh_A Protein (FFH); SRP54, s 81.3 1.9 6.6E-05 41.7 5.7 71 69-150 179-249 (425)
173 3gj0_A GTP-binding nuclear pro 81.0 0.65 2.2E-05 39.0 2.0 81 55-150 49-131 (221)
174 2iwr_A Centaurin gamma 1; ANK 80.9 1.6 5.5E-05 34.8 4.3 62 71-150 54-120 (178)
175 1zo1_I IF2, translation initia 80.8 1.5 5.3E-05 43.3 4.9 64 71-151 51-116 (501)
176 1pui_A ENGB, probable GTP-bind 80.6 2 6.7E-05 35.4 4.8 72 72-150 73-149 (210)
177 1n0u_A EF-2, elongation factor 80.5 2 6.8E-05 44.9 5.9 64 71-151 98-163 (842)
178 1zu4_A FTSY; GTPase, signal re 80.5 2.2 7.5E-05 39.4 5.6 73 69-150 190-266 (320)
179 3geh_A MNME, tRNA modification 79.5 1.4 4.8E-05 42.9 4.1 69 71-151 272-343 (462)
180 3szr_A Interferon-induced GTP- 79.3 1.3 4.3E-05 44.6 3.8 69 179-247 263-337 (608)
181 2yhs_A FTSY, cell division pro 79.3 1.1 3.9E-05 44.5 3.4 71 71-150 376-450 (503)
182 1rj9_A FTSY, signal recognitio 79.2 1.1 3.8E-05 41.2 3.1 74 71-149 185-258 (304)
183 3dpu_A RAB family protein; roc 77.9 0.76 2.6E-05 45.0 1.7 67 70-151 97-163 (535)
184 2qag_C Septin-7; cell cycle, c 77.8 3.8 0.00013 39.4 6.5 79 71-151 88-180 (418)
185 2xxa_A Signal recognition part 77.7 2.2 7.5E-05 41.2 4.9 70 70-150 183-252 (433)
186 1mky_A Probable GTP-binding pr 74.0 1.1 3.7E-05 42.8 1.6 76 72-151 229-305 (439)
187 3mca_A HBS1, elongation factor 73.7 0.61 2.1E-05 46.8 -0.3 79 55-151 240-328 (592)
188 3avx_A Elongation factor TS, e 73.1 7.8 0.00027 42.7 8.0 66 70-151 358-425 (1289)
189 2px0_A Flagellar biosynthesis 72.6 9 0.00031 34.8 7.3 71 69-150 181-251 (296)
190 3ec1_A YQEH GTPase; atnos1, at 72.0 4.3 0.00015 38.0 5.1 74 72-151 213-287 (369)
191 1ls1_A Signal recognition part 70.1 7.1 0.00024 35.3 6.0 71 69-150 179-249 (295)
192 3c5c_A RAS-like protein 12; GD 69.9 5.4 0.00018 32.4 4.7 67 70-150 68-139 (187)
193 3vqt_A RF-3, peptide chain rel 69.4 5.8 0.0002 39.3 5.7 76 55-150 87-164 (548)
194 3sop_A Neuronal-specific septi 68.1 7 0.00024 35.0 5.4 79 71-151 60-153 (270)
195 3h2y_A GTPase family protein; 65.7 9.8 0.00033 35.6 6.1 74 72-151 212-286 (368)
196 4fn5_A EF-G 1, elongation fact 65.6 8.5 0.00029 39.2 6.1 79 55-150 65-149 (709)
197 3p32_A Probable GTPase RV1496/ 64.8 3.8 0.00013 37.9 3.1 60 70-151 171-230 (355)
198 3cbq_A GTP-binding protein REM 64.4 5.9 0.0002 32.6 3.9 68 71-150 72-142 (195)
199 2dy1_A Elongation factor G; tr 63.7 8.8 0.0003 38.9 5.7 66 70-151 73-139 (665)
200 3e70_C DPA, signal recognition 62.9 8.3 0.00028 35.7 5.0 69 71-150 212-280 (328)
201 3ihw_A Centg3; RAS, centaurin, 62.5 4.5 0.00015 33.0 2.8 70 62-150 59-131 (184)
202 2qnr_A Septin-2, protein NEDD5 60.8 8.9 0.00031 34.6 4.7 87 61-151 65-168 (301)
203 2f9l_A RAB11B, member RAS onco 57.4 6 0.00021 32.4 2.7 74 62-150 46-122 (199)
204 3j25_A Tetracycline resistance 55.8 6.4 0.00022 39.7 3.1 63 71-150 67-131 (638)
205 1wxq_A GTP-binding protein; st 53.2 7.2 0.00025 37.0 2.9 42 72-120 72-113 (397)
206 4a9a_A Ribosome-interacting GT 48.9 13 0.00045 35.2 3.9 84 59-150 108-194 (376)
207 2zej_A Dardarin, leucine-rich 48.2 16 0.00054 29.4 3.9 66 70-150 55-124 (184)
208 1tq4_A IIGP1, interferon-induc 48.2 13 0.00045 35.7 3.8 73 67-151 116-188 (413)
209 4dzz_A Plasmid partitioning pr 47.9 60 0.0021 26.1 7.5 65 70-149 75-141 (206)
210 1oix_A RAS-related protein RAB 45.1 26 0.00089 28.5 4.7 74 62-150 70-146 (191)
211 2yv5_A YJEQ protein; hydrolase 43.2 12 0.00041 33.8 2.6 50 99-151 71-123 (302)
212 2p67_A LAO/AO transport system 43.0 2.6 8.8E-05 38.9 -2.0 14 70-83 148-161 (341)
213 2ohf_A Protein OLA1, GTP-bindi 40.1 11 0.00037 36.1 1.8 41 72-119 87-127 (396)
214 2g3y_A GTP-binding protein GEM 38.4 54 0.0018 27.7 5.8 68 71-150 87-157 (211)
215 2og2_A Putative signal recogni 36.5 22 0.00076 33.4 3.3 74 72-150 242-315 (359)
216 1zcb_A G alpha I/13; GTP-bindi 35.4 33 0.0011 32.1 4.3 69 70-151 200-281 (362)
217 3cwq_A Para family chromosome 35.1 77 0.0026 26.4 6.3 63 70-149 67-131 (209)
218 2dby_A GTP-binding protein; GD 34.8 34 0.0012 32.1 4.3 42 72-120 70-111 (368)
219 2www_A Methylmalonic aciduria 34.1 34 0.0012 31.5 4.1 60 70-151 166-225 (349)
220 3b9q_A Chloroplast SRP recepto 33.5 22 0.00076 32.2 2.7 73 72-149 185-257 (302)
221 3ea0_A ATPase, para family; al 32.9 39 0.0013 28.2 4.0 65 70-149 118-183 (245)
222 1t9h_A YLOQ, probable GTPase E 32.6 32 0.0011 31.5 3.7 51 100-151 79-130 (307)
223 1u0l_A Probable GTPase ENGC; p 32.5 27 0.00091 31.4 3.0 50 99-151 76-128 (301)
224 2wsm_A Hydrogenase expression/ 30.5 30 0.001 28.5 2.8 60 70-151 108-167 (221)
225 3t0q_A AGR253WP; kinesin, alph 28.6 96 0.0033 28.9 6.2 31 57-87 220-257 (349)
226 4dkx_A RAS-related protein RAB 28.6 63 0.0022 27.4 4.7 69 70-151 61-131 (216)
227 3ldh_A Lactate dehydrogenase; 28.3 22 0.00074 33.2 1.7 54 92-151 116-169 (330)
228 4aj2_A L-lactate dehydrogenase 27.6 25 0.00084 32.7 2.0 52 93-150 115-166 (331)
229 4etp_A Kinesin-like protein KA 26.2 1.3E+02 0.0045 28.5 6.9 79 57-135 273-395 (403)
230 1puj_A YLQF, conserved hypothe 25.8 84 0.0029 27.9 5.1 51 97-151 13-63 (282)
231 3ec1_A YQEH GTPase; atnos1, at 25.1 34 0.0012 31.8 2.4 52 96-151 60-111 (369)
232 1cip_A Protein (guanine nucleo 24.8 38 0.0013 31.5 2.7 69 70-151 192-273 (353)
233 4fid_A G protein alpha subunit 24.6 1.1E+02 0.0036 28.5 5.7 69 70-151 160-241 (340)
234 3hlu_A Uncharacterized protein 24.5 48 0.0016 25.2 2.8 32 104-138 42-73 (96)
235 3h2y_A GTPase family protein; 24.2 54 0.0018 30.4 3.6 53 95-151 57-109 (368)
236 2qm8_A GTPase/ATPase; G protei 23.8 1.1E+02 0.0038 27.8 5.7 14 70-83 147-160 (337)
237 1bg2_A Kinesin; motor protein, 23.0 1.8E+02 0.0062 26.7 7.0 78 57-134 204-322 (325)
238 1puj_A YLQF, conserved hypothe 21.6 48 0.0016 29.6 2.6 16 71-86 165-180 (282)
239 2cjw_A GTP-binding protein GEM 21.1 79 0.0027 25.5 3.7 68 71-150 56-126 (192)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.96 E-value=1.2e-29 Score=257.11 Aligned_cols=217 Identities=22% Similarity=0.357 Sum_probs=163.9
Q ss_pred CCcCceEEEEEeCCC--ccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeC
Q psy8958 1 MTRSPVKVTLSEGPY--HVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDL 78 (294)
Q Consensus 1 vTRrPl~L~L~~~p~--~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDL 78 (294)
||++|..+++.+.+. .+....... |.-....+...+.+.+...+....+.++++|.+++.+.+.+|+.|+|+|+|+
T Consensus 77 vt~~g~~i~~~~~~~~~~~~~~i~~v--~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDe 154 (608)
T 3szr_A 77 VTRCPLVLKLKKLVNEDKWRGKVSYQ--DYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDL 154 (608)
T ss_dssp CCCSCEEEEEEECSSSSCCEEEESCC-----CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEEC
T ss_pred EEEcCEEEEEecCCccccceeEEeee--cccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeC
Confidence 789999999888652 222211110 1112234455555555555444446678899999999999999999999999
Q ss_pred CCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcc
Q psy8958 79 PGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKD 158 (294)
Q Consensus 79 PGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~ 158 (294)
||+...++.+++.+...++.+|+.+|++++++|||+|++++.|++++.++++|+++||.|.|||||+||+|+.
T Consensus 155 PGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv------- 227 (608)
T 3szr_A 155 PGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV------- 227 (608)
T ss_dssp CC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS-------
T ss_pred CCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred ccccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCC
Q psy8958 159 GSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGK 238 (294)
Q Consensus 159 ~~v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~ 238 (294)
+++ ...++.+++.|+
T Consensus 228 ---------------------------------------------------------------~~g--~~~~~~~~l~~~ 242 (608)
T 3szr_A 228 ---------------------------------------------------------------DKG--TEDKVVDVVRNL 242 (608)
T ss_dssp ---------------------------------------------------------------SSS--STTCCCCCC--C
T ss_pred ---------------------------------------------------------------Ccc--cHHHHHHHHhCc
Confidence 111 123456789999
Q ss_pred cccCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhhhcCCCCCcCCC
Q psy8958 239 LFPMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKVRQGNQGSSGRL 294 (294)
Q Consensus 239 ~~~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~~~~~~~~~~~~ 294 (294)
.+||+ +||++|+| |+++ .+.+++++++.|+.||.+||+|+.... .++.|+.+|
T Consensus 243 ~~~l~-~g~~~v~n-r~~~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~-~~~~g~~~L 298 (608)
T 3szr_A 243 VFHLK-KGYMIVKC-RGQQEIQDQLSLSEALQREKIFFENHPYFRDLLE-EGKATVPCL 298 (608)
T ss_dssp CSCCS-SCEECCCC-SCTTCTTTCCCHHHHTTTHHHHTTTCTTTSGGGG-TCC---CCH
T ss_pred ccccC-ceEEEEec-CchhhcccCCCHHHHHHHHHHHHccCccccccCc-cccccHHHH
Confidence 99999 99999999 5553 668999999999999999999987653 356676654
No 2
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.96 E-value=1.4e-28 Score=232.34 Aligned_cols=203 Identities=25% Similarity=0.432 Sum_probs=177.5
Q ss_pred CCcCceEEEEEeCCC---ccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEe
Q psy8958 1 MTRSPVKVTLSEGPY---HVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVD 77 (294)
Q Consensus 1 vTRrPl~L~L~~~p~---~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVD 77 (294)
|||+|+++++.+.+. .++.|.+.. ...+.+|..+..++..++....|.+.+||.++|.++|.+|+.++|+|||
T Consensus 67 vT~~p~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvD 142 (360)
T 3t34_A 67 VTRRPLVLQLQKIDDGTREYAEFLHLP----RKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLID 142 (360)
T ss_dssp CCCSCEEEEEEECSSCSCCEEEETTST----TCCBSCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEE
T ss_pred ccCcceEEEEecCCCcccceeeeecCC----CcccCCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEE
Confidence 799999999998763 456665543 2467889999999999999888889999999999999999999999999
Q ss_pred CCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhc
Q psy8958 78 LPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEK 157 (294)
Q Consensus 78 LPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~ 157 (294)
|||+.+....+|+.++..++..++..|+.++++|||+|.+++.|..+++++++++.+++.|.+||+|+||+|+.
T Consensus 143 tPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~------ 216 (360)
T 3t34_A 143 LPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLM------ 216 (360)
T ss_dssp CCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGC------
T ss_pred CCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred cccccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcC
Q psy8958 158 DGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAG 237 (294)
Q Consensus 158 ~~~v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~ 237 (294)
+++ +.+.+++.+
T Consensus 217 ----------------------------------------------------------------~~~----~~~~~~~~~ 228 (360)
T 3t34_A 217 ----------------------------------------------------------------DKG----TDAVEILEG 228 (360)
T ss_dssp ----------------------------------------------------------------CTT----CCSHHHHTT
T ss_pred ----------------------------------------------------------------CCc----ccHHHHHcC
Confidence 111 224567788
Q ss_pred CcccCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhh
Q psy8958 238 KLFPMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKV 283 (294)
Q Consensus 238 ~~~~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~ 283 (294)
...+++ +||++|++ ++++ ...++.+++..|+.||.+||+|+...
T Consensus 229 ~~~~~~-~~~~~v~~-~s~~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~ 275 (360)
T 3t34_A 229 RSFKLK-YPWVGVVN-RSQADINKNVDMIAARKREREYFSNTTEYRHLA 275 (360)
T ss_dssp SSSCCS-SCCEEECC-CCHHHHHTTCCHHHHHHHHHHHHTTCTTTGGGG
T ss_pred cccccc-CCeEEEEE-CChHHhccCCCHHHHHHHHHHHhcCCCccccch
Confidence 889998 99999998 5443 56788899999999999999999764
No 3
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.95 E-value=5.8e-27 Score=243.41 Aligned_cols=202 Identities=29% Similarity=0.454 Sum_probs=177.9
Q ss_pred CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG 80 (294)
Q Consensus 1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG 80 (294)
|||||++++|.+++..|+.|.+..+ ..+.++.++.++++.+++...|.+++||.++|.++|++|++++|+||||||
T Consensus 84 ~Tr~Pl~l~l~~~~~~~~~~l~~~~----~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPG 159 (772)
T 3zvr_A 84 VTRRPLVLQLVNSTTEYAEFLHCKG----KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG 159 (772)
T ss_dssp SCSSCEEEEEEECSSCEEECSTTTT----CCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCC
T ss_pred ccccceEEEeecCCcchhheeccCC----cccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCC
Confidence 8999999999999998998876543 356889999999999999888889999999999999999999999999999
Q ss_pred CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958 81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS 160 (294)
Q Consensus 81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~ 160 (294)
++..++.+||.++...+.+++..|+.++..+||+|++|+.++.+++.+.+++.+++.|.++|+|+||+|+.
T Consensus 160 i~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv--------- 230 (772)
T 3zvr_A 160 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM--------- 230 (772)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSS---------
T ss_pred cccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958 161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240 (294)
Q Consensus 161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~ 240 (294)
+++ .....++.++.+
T Consensus 231 -------------------------------------------------------------~~~----~~~~~il~~~~~ 245 (772)
T 3zvr_A 231 -------------------------------------------------------------DEG----TDARDVLENKLL 245 (772)
T ss_dssp -------------------------------------------------------------CTT----CCSHHHHTTCSS
T ss_pred -------------------------------------------------------------Ccc----hhhHHHHHHHhh
Confidence 110 122456677889
Q ss_pred cCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhh
Q psy8958 241 PMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTK 282 (294)
Q Consensus 241 ~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~ 282 (294)
+|+ +||..|++ .+++ +-..+.++...|+.||..+|+|...
T Consensus 246 ~l~-lg~~~VV~-iSA~~G~GvdeL~eaI~~e~~ffpe~P~yd~l 288 (772)
T 3zvr_A 246 PLR-RGYIGVVN-RSQKDIDGKKDITAALAAERKFFLSHPSYRHL 288 (772)
T ss_dssp CCS-SCEEECCC-CCCEESSSSEEHHHHHHHHHHHHHHCTTTGGG
T ss_pred hhh-ccCCceEE-ecccccccchhHHHHHHHHHHhccCCcchhhh
Confidence 998 89999998 6654 4567888899999999999999544
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.94 E-value=3.5e-26 Score=215.89 Aligned_cols=203 Identities=29% Similarity=0.450 Sum_probs=175.7
Q ss_pred CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG 80 (294)
Q Consensus 1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG 80 (294)
|||+|.++++.+.+..|+.|.+..+ ..++++..+..+++.++.+..|.+.+++.+++.+++++|+.++|+|||+||
T Consensus 64 ~t~~p~~~~~~~~~~~~~~~~~~~~----~~~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG 139 (353)
T 2x2e_A 64 VTRRPLVLQLVNATTEYAEFLHCKG----KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG 139 (353)
T ss_dssp CCCSCEEEEEEECSSCEEEETTSTT----CCBCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCC
T ss_pred ccccceEEEEEcCCccceeeeecCC----cccCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCC
Confidence 7999999999999988998876542 356788889999988888777778999999999999999999999999999
Q ss_pred CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958 81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS 160 (294)
Q Consensus 81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~ 160 (294)
+.+.+..+|++++.+.+++|+..|+.+++++||+|++|+.|+++++++++++.+|+.|.++|+|+||+|+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~--------- 210 (353)
T 2x2e_A 140 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLM--------- 210 (353)
T ss_dssp BCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGS---------
T ss_pred CCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999842
Q ss_pred ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958 161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240 (294)
Q Consensus 161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~ 240 (294)
+++ ..+.+++.++.+
T Consensus 211 -------------------------------------------------------------~~~----~~~~~~~~~~~~ 225 (353)
T 2x2e_A 211 -------------------------------------------------------------DEG----TDARDVLENKLL 225 (353)
T ss_dssp -------------------------------------------------------------CTT----CCCHHHHTTCSS
T ss_pred -------------------------------------------------------------Ccc----hhHHHHHhCCcc
Confidence 110 123456778889
Q ss_pred cCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhh
Q psy8958 241 PMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKV 283 (294)
Q Consensus 241 ~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~ 283 (294)
+|+ +||+.|++ .+++ +...+.++...|..||..++.|++.-
T Consensus 226 ~l~-~~~~~v~~-~SA~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~ 269 (353)
T 2x2e_A 226 PLR-RGYIGVVN-RSQKDIDGKKDITAALAAERKFFLSHPSYRHLA 269 (353)
T ss_dssp CCT-TCEEECCC-CCHHHHHTTCCHHHHHHHHHHHHHHCTTTGGGG
T ss_pred ccc-CCceEEEe-CCcccccccccHHHHHHHHHHHhccCCcccccH
Confidence 998 89998888 6654 44566677778999999999998763
No 5
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=8.6e-20 Score=165.09 Aligned_cols=203 Identities=29% Similarity=0.452 Sum_probs=165.1
Q ss_pred CCcCceEEEEEeCCCccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCCceEEeCCC
Q psy8958 1 MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQRMVLVDLPG 80 (294)
Q Consensus 1 vTRrPl~L~L~~~p~~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~LTLVDLPG 80 (294)
||++|.++++.+.+..|..|.+..+ ..++.+..+..+++..+....|.+.+++.+++.+++.+|+..+|+|||+||
T Consensus 59 ~t~~p~~~~~~~~~~~~~~~~~~~g----~~~tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG 134 (299)
T 2aka_B 59 VTRRPLVLQLVNSTTEYAEFLHCKG----KKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPG 134 (299)
T ss_dssp SCSSCEEEEEEECSSCEEEETTSTT----CCBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCC
T ss_pred ccccceEEEEecCCcccchhhhcCC----cccCCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCC
Confidence 6899999999999887877765432 345777877777877776666777899999999999999999999999999
Q ss_pred CcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhhhhhhcccc
Q psy8958 81 IISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGS 160 (294)
Q Consensus 81 i~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~~~~~~~~~ 160 (294)
+......+|++++......++..|++..+++||+|++++.++.+++++.+++.+++.+.++|+|+||+|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~--------- 205 (299)
T 2aka_B 135 MTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM--------- 205 (299)
T ss_dssp BCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGS---------
T ss_pred CCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccC---------
Confidence 99988878888888899999999999999999999999999999999899999999999999999999852
Q ss_pred ccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHHHHHcCCcc
Q psy8958 161 VDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIKKILAGKLF 240 (294)
Q Consensus 161 v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~~il~~~~~ 240 (294)
++. ..+.+.+.+..+
T Consensus 206 -------------------------------------------------------------~~~----~~~~~~~~~~~~ 220 (299)
T 2aka_B 206 -------------------------------------------------------------DEG----TDARDVLENKLL 220 (299)
T ss_dssp -------------------------------------------------------------CTT----CCCHHHHTTCSS
T ss_pred -------------------------------------------------------------CCC----chHHHHHhCCcC
Confidence 000 012345666677
Q ss_pred cCCCCCeEEEEeCCCCC---CCccHHHHHHHHHHHhccChhhhhhh
Q psy8958 241 PMKALGYFAVVTGRGGK---KDESIQDIKEYEENFFKKSKLFSTKV 283 (294)
Q Consensus 241 ~L~~lG~~~v~~~~~~~---~~~~~~~~~~~e~~~f~~~~~~~~~~ 283 (294)
+++ +||..|+. .+++ +-..+-++...|..||..++.|...-
T Consensus 221 ~~~-~~~~~v~~-~SA~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~ 264 (299)
T 2aka_B 221 PLR-RGYIGVVN-RSQKDIDGKKDITAALAAERKFFLSHPSYRHLA 264 (299)
T ss_dssp CCT-TCEEECCC-CCCBCTTSCBCHHHHHHHHHHHHHHCTTTGGGG
T ss_pred cCC-CCcEEEEC-CChhhccccccHHHHHHHHHHHHhcCCccccch
Confidence 887 79987877 5554 33455566677999998888887653
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.81 E-value=1.5e-19 Score=165.22 Aligned_cols=202 Identities=29% Similarity=0.501 Sum_probs=148.3
Q ss_pred CCcCceEEEEEeCCC--------ccccccccccccCCCCCCcHHHHHHHHHHHHhcccCCCccccccceEEEEeCCCCCC
Q psy8958 1 MTRSPVKVTLSEGPY--------HVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEVISMSVKGPGLQR 72 (294)
Q Consensus 1 vTRrPl~L~L~~~p~--------~~~~f~~~~~ef~~~~~~d~~~i~~ei~~~m~~~~g~~~~~S~~~I~leI~gP~~p~ 72 (294)
||++|.++++.+.+. .|.+|.+..+ ..+.+|.++.+++..++.+..|.+++||.+++.++|.+|+..+
T Consensus 57 ~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 132 (315)
T 1jwy_B 57 VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPN----DMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVN 132 (315)
T ss_dssp ----CEEEEEEECCCCTTSCCCCCEEEESSSTT----CCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCS
T ss_pred eeeeeEEEEEEeCCCcccccchhhhhhhhcccc----cccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCC
Confidence 799999999988642 4555554332 3467888999999988888777788999999999999999999
Q ss_pred ceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhhh
Q psy8958 73 MVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQL 152 (294)
Q Consensus 73 LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~~ 152 (294)
++|||+||+...+..+|+..+......++..|+...+++|++|.+++.++.+++.+.+++.+++.+.++|.|+||+|+.
T Consensus 133 ~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~- 211 (315)
T 1jwy_B 133 LTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLM- 211 (315)
T ss_dssp EEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSS-
T ss_pred cEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccC-
Confidence 9999999999877777888888899999999999999999999988889988888899999999999999999999842
Q ss_pred hhhhccccccccccccccCCccccccCCcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhhcCCChHHHH
Q psy8958 153 IRIEKDGSVDAERSNVTDLGSVMDLQGKHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEENHSDPQRIK 232 (294)
Q Consensus 153 ~~~~~~~~v~~~r~~~~~LG~~~d~~~~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~~~~~~~~~~ 232 (294)
+ +. ..+.
T Consensus 212 -----------------------~----------------------------------------------~~----~~~~ 218 (315)
T 1jwy_B 212 -----------------------D----------------------------------------------KG----TDAM 218 (315)
T ss_dssp -----------------------C----------------------------------------------SS----CCCH
T ss_pred -----------------------C----------------------------------------------cc----hHHH
Confidence 0 00 0123
Q ss_pred HHHcCCcccCCCCCeEEEEeCCCCCC---CccHHHHHHHHHHHhccChhhhhh
Q psy8958 233 KILAGKLFPMKALGYFAVVTGRGGKK---DESIQDIKEYEENFFKKSKLFSTK 282 (294)
Q Consensus 233 ~il~~~~~~L~~lG~~~v~~~~~~~~---~~~~~~~~~~e~~~f~~~~~~~~~ 282 (294)
+.+.++..+++ +||+.|+. .++.. ...+.++.+.+.+||..+|+|...
T Consensus 219 ~~~~~~~~~~~-~~~~~v~~-~sa~~~~~~~gv~~l~~~~~~~~~~~~~~~~~ 269 (315)
T 1jwy_B 219 EVLTGRVIPLT-LGFIGVIN-RSQEDIIAKKSIRESLKSEILYFKNHPIYKSI 269 (315)
T ss_dssp HHHTTSSSCCT-TCEEECCC-CCHHHHSSSCCHHHHHHHHHHHHHTCTTGGGS
T ss_pred HHHhCCCccCC-CCeEEEec-CChhhhccCCCHHHHHHHHHHHHhCCCccccc
Confidence 44555667777 89998877 55543 788999999999999999988743
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.74 E-value=1.7e-05 Score=81.43 Aligned_cols=87 Identities=20% Similarity=0.211 Sum_probs=63.6
Q ss_pred ccccccceEEEEeCCCC---CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHh
Q psy8958 54 KTVSNEVISMSVKGPGL---QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDL 130 (294)
Q Consensus 54 ~~~S~~~I~leI~gP~~---p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~l 130 (294)
...+.++..++|+.|.- .+++|||+||+..... ...++..|+...+ +||.|++++..+..++...+
T Consensus 154 ~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----------~~~~~~~~i~~aD-~vL~Vvda~~~~s~~e~~~l 222 (695)
T 2j69_A 154 KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----------RNELSLGYVNNCH-AILFVMRASQPCTLGERRYL 222 (695)
T ss_dssp CCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----------CHHHHTHHHHSSS-EEEEEEETTSTTCHHHHHHH
T ss_pred ccccccceEEEEEccchhccCCeEEEECCCCCchhh----------HHHHHHHHHHhCC-EEEEEEeCCCccchhHHHHH
Confidence 34566788899998864 4799999999875321 2467788888877 56667777766665555444
Q ss_pred hhhcCCCCCeEEEEeccchhh
Q psy8958 131 VSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 131 ar~~DP~G~RTIGVlTK~D~~ 151 (294)
.+.+...+.++|.|+||+|+.
T Consensus 223 ~~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 223 ENYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp HHHTTTSCCCEEEEEECGGGG
T ss_pred HHHHHhhCCCEEEEEECcccc
Confidence 455666678899999999974
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.27 E-value=0.00093 Score=56.67 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=59.9
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCc--eEEEeccCCCcch--hcHHHHh
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNA--IILCIQDGSVDAE--RSNVTDL 130 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~s--IILaV~~a~~D~a--ns~al~l 130 (294)
+.+.+.....+...+...++|+|+||+..... +....+..+.++..|+..-.. +++.|++++..+. ....++.
T Consensus 63 ~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~ 139 (223)
T 4dhe_A 63 GRTQHINYFSVGPAAEPVAHLVDLPGYGYAEV---PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEW 139 (223)
T ss_dssp CSCCCEEEEEESCTTSCSEEEEECCCCCSSCC---CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHH
T ss_pred CcccceEEEEecCCCCCcEEEEcCCCCCcccC---ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHH
Confidence 34455556666645667899999999765443 234467778888898887554 4666777664333 2233444
Q ss_pred hhhcCCCCCeEEEEeccchhh
Q psy8958 131 VSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 131 ar~~DP~G~RTIGVlTK~D~~ 151 (294)
.++ .+...|.|+||+|+.
T Consensus 140 l~~---~~~p~i~v~nK~Dl~ 157 (223)
T 4dhe_A 140 FAP---TGKPIHSLLTKCDKL 157 (223)
T ss_dssp HGG---GCCCEEEEEECGGGS
T ss_pred HHh---cCCCEEEEEeccccC
Confidence 444 467899999999963
No 9
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.53 E-value=0.0088 Score=53.55 Aligned_cols=94 Identities=14% Similarity=0.182 Sum_probs=53.3
Q ss_pred ccccceEEEEeCCCC-CCceEEeCCCCcccCCCC-CChhHHHHHHHHhhhhcCC-------------CCceEEEeccCCC
Q psy8958 56 VSNEVISMSVKGPGL-QRMVLVDLPGIISTSTQD-MASDTRDLIRQMTQTHMSN-------------PNAIILCIQDGSV 120 (294)
Q Consensus 56 ~S~~~I~leI~gP~~-p~LTLVDLPGi~~~~~~~-q~~~~~~~i~~Lv~~Yi~~-------------p~sIILaV~~a~~ 120 (294)
+..+.....+...+. ..|+|+|+||+-...... .-..+...+.+-...|+.. .+++++.|.++..
T Consensus 49 ~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~ 128 (274)
T 3t5d_A 49 VQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 128 (274)
T ss_dssp CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCS
T ss_pred eEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCC
Confidence 334444455544333 479999999985543322 1223333333333455543 4477777777764
Q ss_pred cchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 121 D~ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
.+...+ ..+.+.+.. +.-.|.|+||.|+.
T Consensus 129 ~~~~~d-~~~l~~l~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 129 GLKPLD-IEFMKRLHE-KVNIIPLIAKADTL 157 (274)
T ss_dssp SCCHHH-HHHHHHHTT-TSCEEEEESSGGGS
T ss_pred CCCHHH-HHHHHHHhc-cCCEEEEEeccCCC
Confidence 444333 334444544 67899999999963
No 10
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.52 E-value=0.0047 Score=53.70 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=47.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhh-cCC-CCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQ-MDP-QGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~-~DP-~G~RTIGVlTK~ 148 (294)
..++|+|+||+...... ..+....+...+..|...++.+|+++-....+......++...+ +.. .+..+|.|+||.
T Consensus 78 ~~i~liDTpG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVP--NAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp EEEEEEECCSCC-------CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred ceEEEEECCCccCCCCC--HHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 46899999999876543 34556677778888888888776655433223333334433322 211 124699999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 156 D~~ 158 (239)
T 3lxx_A 156 DDL 158 (239)
T ss_dssp GGC
T ss_pred ccC
Confidence 963
No 11
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.50 E-value=0.0052 Score=54.04 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=51.0
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCC--CCeEEEEec-c
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQ--GKRTIFVLT-K 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~--G~RTIGVlT-K 147 (294)
..+.|+|+||+..... ........+...+..|+...+.+|+++-.....-....+++..+++-.. +...|.|+| |
T Consensus 71 ~~i~iiDTpG~~~~~~--~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK 148 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKD--HCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHK 148 (260)
T ss_dssp EEEEEEECCGGGGSSC--CCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CEEEEEECcCCCCCCC--CHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcc
Confidence 4699999999987553 3344555666777788899997776665543222223344555554221 356899999 9
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 149 ~Dl~ 152 (260)
T 2xtp_A 149 EDLN 152 (260)
T ss_dssp GGGT
T ss_pred cccC
Confidence 9963
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.40 E-value=0.0045 Score=50.98 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=48.3
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCC--ceEEEeccCCCcchhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPN--AIILCIQDGSVDAERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~--sIILaV~~a~~D~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
.+.|+|+||+.... .+.+..+..+.+...|+.... ..++.|++++...... ..++..++ .+...|.|+||
T Consensus 70 ~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~p~i~v~nK 143 (195)
T 1svi_A 70 ELHFVDVPGYGFAK---VSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY---YGIPVIVIATK 143 (195)
T ss_dssp TEEEEECCCBCCCS---SCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred cEEEEECCCCCccc---cCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH---cCCCEEEEEEC
Confidence 79999999975433 345556777888899987652 3555566665433222 23344443 45779999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 144 ~Dl 146 (195)
T 1svi_A 144 ADK 146 (195)
T ss_dssp GGG
T ss_pred ccc
Confidence 996
No 13
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.30 E-value=0.012 Score=53.97 Aligned_cols=91 Identities=12% Similarity=0.262 Sum_probs=60.0
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHH-HHhhh
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNV-TDLVS 132 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~a-l~lar 132 (294)
+.+.+.+...+..+.-..++|+|+||+..... ...+.+....++..|+...+.+|+++-..+. ...+... ++.++
T Consensus 43 ~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~---~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~ 119 (308)
T 3iev_A 43 GTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK---SDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIK 119 (308)
T ss_dssp CCCCSCEEEEEEETTTEEEEEEECCCCCCCCT---TCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTG
T ss_pred CceeeEEEEEEecCCCCeEEEEECcCCCcccc---chhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHH
Confidence 34455555555555356799999999986442 2356677778889999999877666554432 2333333 45555
Q ss_pred hcCCCCCeEEEEeccchhh
Q psy8958 133 QMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 133 ~~DP~G~RTIGVlTK~D~~ 151 (294)
. .+...|.|+||+|+.
T Consensus 120 ~---~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 120 P---LNKPVIVVINKIDKI 135 (308)
T ss_dssp G---GCCCEEEEEECGGGS
T ss_pred h---cCCCEEEEEECccCC
Confidence 4 356799999999964
No 14
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.09 E-value=0.013 Score=52.55 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=45.3
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc--CCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM--SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi--~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
.++|+|+||+......++.... -+.+...|+ .+++.+|+++ +++. . ...+.+...+-..+...|.|+||.|
T Consensus 49 ~~~lvDtpG~~~~~~~~~~~~~---~e~i~~~~~~~~~~d~vi~Vv-Das~-~--~~~~~l~~~l~~~~~pvilv~NK~D 121 (256)
T 3iby_A 49 LIEITDLPGVYSLVANAEGISQ---DEQIAAQSVIDLEYDCIINVI-DACH-L--ERHLYLTSQLFELGKPVVVALNMMD 121 (256)
T ss_dssp EEEEEECCCCSSCC------CH---HHHHHHHHHHHSCCSEEEEEE-EGGG-H--HHHHHHHHHHTTSCSCEEEEEECHH
T ss_pred EEEEEeCCCcccccccccCCCH---HHHHHHHHHhhCCCCEEEEEe-eCCC-c--hhHHHHHHHHHHcCCCEEEEEEChh
Confidence 8999999999765543221111 234666777 7788666555 4443 2 2334455555556789999999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 122 l~ 123 (256)
T 3iby_A 122 IA 123 (256)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.98 E-value=0.01 Score=48.39 Aligned_cols=73 Identities=21% Similarity=0.363 Sum_probs=47.9
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCC--ceEEEeccCCCcchhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPN--AIILCIQDGSVDAERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~--sIILaV~~a~~D~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
.++++|+||+..... +....+..+.+...|+.... .+++.|+++......+ ..++..+.. +...|.|+||
T Consensus 69 ~~~i~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~~p~i~v~nK 142 (195)
T 3pqc_A 69 KYYFVDLPGYGYAKV---SKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---NIPFTIVLTK 142 (195)
T ss_dssp TEEEEECCCBSSSCC---CHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---TCCEEEEEEC
T ss_pred cEEEEECCCCccccC---ChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---CCCEEEEEEC
Confidence 689999999765332 34455667788888887653 3456666665433322 233444444 5789999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 143 ~Dl 145 (195)
T 3pqc_A 143 MDK 145 (195)
T ss_dssp GGG
T ss_pred hhc
Confidence 996
No 16
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.73 E-value=0.004 Score=62.22 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=53.0
Q ss_pred ccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHH--HHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhh
Q psy8958 56 VSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRD--LIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQ 133 (294)
Q Consensus 56 ~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~--~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~ 133 (294)
|....+++.+.++....++|||+||+...... .+.. ....++..|+...+.||++|-+.+.++.. ....+.+.
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~----~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~-~~~~~l~~ 213 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQ----RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISD-EFSEAIGA 213 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCH-HHHHHHHH
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchh----HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCH-HHHHHHHH
Confidence 33444555555554468999999998763211 1111 13466777787788665555443323332 23344455
Q ss_pred cCCCCCeEEEEeccchhh
Q psy8958 134 MDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 134 ~DP~G~RTIGVlTK~D~~ 151 (294)
+...+...|.|+||+|+.
T Consensus 214 l~~~~~pvilVlNK~Dl~ 231 (550)
T 2qpt_A 214 LRGHEDKIRVVLNKADMV 231 (550)
T ss_dssp TTTCGGGEEEEEECGGGS
T ss_pred HHhcCCCEEEEEECCCcc
Confidence 555567899999999974
No 17
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.66 E-value=0.04 Score=50.57 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=50.8
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK 147 (294)
-..++|+|+||+.... ..+.+....++..|++..+.+++++ +++..+ ....+++.+++..+ +.-.|.|+||
T Consensus 54 ~~~l~l~DTpG~~~~~-----~~l~~~~~~~~~~~l~~ad~il~Vv-D~~~~~~~~~~~i~~~l~~~~~-~~p~ilV~NK 126 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPM-----DALGEFMDQEVYEALADVNAVVWVV-DLRHPPTPEDELVARALKPLVG-KVPILLVGNK 126 (301)
T ss_dssp TEEEEEEECCCCCCCC-----SHHHHHHHHHHHHHTSSCSEEEEEE-ETTSCCCHHHHHHHHHHGGGTT-TSCEEEEEEC
T ss_pred CcEEEEecCccccchh-----hHHHHHHHHHHHHHHhcCCEEEEEE-ECCCCCChHHHHHHHHHHhhcC-CCCEEEEEEC
Confidence 4579999999987532 2455667788899999988665554 544322 23334455555532 4678999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 127 ~Dl~ 130 (301)
T 1wf3_A 127 LDAA 130 (301)
T ss_dssp GGGC
T ss_pred cccC
Confidence 9974
No 18
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.65 E-value=0.015 Score=56.12 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=52.8
Q ss_pred CccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhh
Q psy8958 53 GKTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVS 132 (294)
Q Consensus 53 ~~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar 132 (294)
..+++.+.+...+...+. .++|+|+||+... .+.+.+.++.++..|+...+.||++ +++...+... -..+++
T Consensus 54 ~~g~t~~~~~~~~~~~~~-~~~liDT~G~~~~-----~~~~~~~~~~~~~~~~~~ad~il~V-vD~~~~~~~~-d~~l~~ 125 (456)
T 4dcu_A 54 TPGVTRDRIYSSAEWLNY-DFNLIDTGGIDIG-----DEPFLAQIRQQAEIAMDEADVIIFM-VNGREGVTAA-DEEVAK 125 (456)
T ss_dssp -------CEEEECTTCSS-CCEEECCCC-----------CCHHHHHHHHHHHHHHCSEEEEE-EESSSCSCHH-HHHHHH
T ss_pred CCCcceeEEEEEEEECCc-eEEEEECCCCCCc-----chHHHHHHHHHHHhhHhhCCEEEEE-EeCCCCCChH-HHHHHH
Confidence 345666777777766554 8999999998732 2345678888999999999865555 5555423222 223444
Q ss_pred hcCCCCCeEEEEeccchhh
Q psy8958 133 QMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 133 ~~DP~G~RTIGVlTK~D~~ 151 (294)
.+...+...|-|++|+|+.
T Consensus 126 ~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 126 ILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHTTCCSCEEEEEECC---
T ss_pred HHHHcCCCEEEEEECccch
Confidence 4444678899999999964
No 19
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.63 E-value=0.026 Score=44.46 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=47.7
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
.+.|+|+||...... .......+...|+...+.+|+++-..+. ........+..++ .+...+.|+||+|+
T Consensus 50 ~~~l~Dt~G~~~~~~------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl 120 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDK------WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR---KGKPVILVATKVDD 120 (161)
T ss_dssp EEEEEECGGGCSSSS------CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH---HTCCEEEEEECCCS
T ss_pred eEEEEECCCCCCccc------hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh---cCCCEEEEEECccc
Confidence 789999999865431 3455667788899999877776654442 2223344455555 34568999999996
Q ss_pred h
Q psy8958 151 Q 151 (294)
Q Consensus 151 ~ 151 (294)
.
T Consensus 121 ~ 121 (161)
T 2dyk_A 121 P 121 (161)
T ss_dssp G
T ss_pred c
Confidence 4
No 20
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.72 E-value=0.048 Score=48.49 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=44.8
Q ss_pred cceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCC-cchh--cHHHHhhhh
Q psy8958 59 EVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSV-DAER--SNVTDLVSQ 133 (294)
Q Consensus 59 ~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~-D~an--s~al~lar~ 133 (294)
++..+.+... ...++|+|+||+...... . ....+.+.+|+. ..+.+|+++ +.+. .+.. ...++..++
T Consensus 76 ~~~~~~~~~~-~~~l~iiDTpG~~~~~~~--~----~~~~~~i~~~~~~~~~d~il~v~-~~d~~~~~~~~~~~~~~l~~ 147 (270)
T 1h65_A 76 RPVMVSRSRA-GFTLNIIDTPGLIEGGYI--N----DMALNIIKSFLLDKTIDVLLYVD-RLDAYRVDNLDKLVAKAITD 147 (270)
T ss_dssp SCEEEEEEET-TEEEEEEECCCSEETTEE--C----HHHHHHHHHHTTTCEECEEEEEE-ESSCCCCCHHHHHHHHHHHH
T ss_pred eeEEEEEeeC-CeEEEEEECCCCCCCccc--h----HHHHHHHHHHhhcCCCCEEEEEE-eCCCCcCCHHHHHHHHHHHH
Confidence 4444555443 346999999998764321 1 222334455654 355555553 2221 2332 234444443
Q ss_pred cCCC--CCeEEEEeccchh
Q psy8958 134 MDPQ--GKRTIFVLTKVSQ 150 (294)
Q Consensus 134 ~DP~--G~RTIGVlTK~D~ 150 (294)
.-+. +...|.|+||+|+
T Consensus 148 ~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 148 SFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp HHCGGGGGGEEEEEECCSC
T ss_pred HhCcccccCEEEEEECccc
Confidence 3221 2579999999995
No 21
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.64 E-value=0.035 Score=44.53 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=40.0
Q ss_pred EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHH----hhhhcC
Q psy8958 62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTD----LVSQMD 135 (294)
Q Consensus 62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~----lar~~D 135 (294)
.+.+.+.....+.|+|+||.. ..+.+...|++..+.+|+++-..+.+. .+ ...+. .+....
T Consensus 49 ~~~~~~~~~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 115 (182)
T 1ky3_A 49 EVTVDGDKVATMQVWDTAGQE-------------RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNS 115 (182)
T ss_dssp EECCSSSCCEEEEEECCC-----------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred EEEEcCCcEEEEEEEECCCCh-------------HhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccC
Confidence 344443445689999999922 234567789999887777664433211 11 11111 222223
Q ss_pred CCCCeEEEEeccchh
Q psy8958 136 PQGKRTIFVLTKVSQ 150 (294)
Q Consensus 136 P~G~RTIGVlTK~D~ 150 (294)
..+...+-|+||+|+
T Consensus 116 ~~~~p~ilv~nK~Dl 130 (182)
T 1ky3_A 116 PETFPFVILGNKIDA 130 (182)
T ss_dssp TTTCCEEEEEECTTS
T ss_pred cCCCcEEEEEECCcc
Confidence 456789999999995
No 22
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.49 E-value=0.075 Score=43.76 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=43.7
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch-hcHHHHhhhhcCC---CCCeEEEE
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE-RSNVTDLVSQMDP---QGKRTIFV 144 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a-ns~al~lar~~DP---~G~RTIGV 144 (294)
...+.|+|+||.. ....+...|+++.+.+|+++-..+.+ +. -...+...+...+ .+...|-|
T Consensus 72 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 138 (208)
T 2yc2_C 72 SVELFLLDTAGSD-------------LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLV 138 (208)
T ss_dssp EEEEEEEETTTTH-------------HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEE
T ss_pred EEEEEEEECCCcH-------------HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEE
Confidence 3579999999962 34567889999988776665443321 11 1223444555544 57889999
Q ss_pred eccchhh
Q psy8958 145 LTKVSQQ 151 (294)
Q Consensus 145 lTK~D~~ 151 (294)
+||.|+.
T Consensus 139 ~nK~Dl~ 145 (208)
T 2yc2_C 139 ANKTDLP 145 (208)
T ss_dssp EECC---
T ss_pred EECcccc
Confidence 9999963
No 23
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.43 E-value=0.055 Score=48.59 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=48.6
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc--CCCCceEEEeccCCCcchhcHHHHhhh
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM--SNPNAIILCIQDGSVDAERSNVTDLVS 132 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi--~~p~sIILaV~~a~~D~ans~al~lar 132 (294)
+++-+...-.+...+ ..+.|+|+||+.............+ .+.+.|+ ..+..+|+ |++++.--.+.......+
T Consensus 35 g~t~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~e---~i~~~~~~~~~~d~ii~-VvD~~~~~~~~~~~~~l~ 109 (274)
T 3i8s_A 35 GVTVERKEGQFSTTD-HQVTLVDLPGTYSLTTISSQTSLDE---QIACHYILSGDADLLIN-VVDASNLERNLYLTLQLL 109 (274)
T ss_dssp TSSSEEEEEEEECSS-CEEEEEECCCCSCSCC----CCHHH---HHHHHHHHHTCCSEEEE-EEEGGGHHHHHHHHHHHH
T ss_pred CeeEEEEEEEEEeCC-CceEEEECcCCCccccccccCCHHH---HHHHHHHhhcCCCEEEE-EecCCChHHHHHHHHHHH
Confidence 344444444444443 4689999999877553221112222 3455565 56775555 555543212222233333
Q ss_pred hcCCCCCeEEEEeccchhh
Q psy8958 133 QMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 133 ~~DP~G~RTIGVlTK~D~~ 151 (294)
+. +...|.|+||+|+.
T Consensus 110 ~~---~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 110 EL---GIPCIVALNMLDIA 125 (274)
T ss_dssp HH---TCCEEEEEECHHHH
T ss_pred hc---CCCEEEEEECccch
Confidence 33 67899999999974
No 24
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.31 E-value=0.064 Score=51.37 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=48.8
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhc
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQM 134 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~ 134 (294)
+++.+.+...+...+ ..++|+|+||+.... .++.+.++.+...|+.....+|++ +++...+...+ ..+++.+
T Consensus 36 g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~-----~~~~~~~~~~~~~~~~~ad~il~v-vD~~~~~~~~d-~~~~~~l 107 (436)
T 2hjg_A 36 GVTRDRIYSSAEWLN-YDFNLIDTGGIDIGD-----EPFLAQIRQQAEIAMDEADVIIFM-VNGREGVTAAD-EEVAKIL 107 (436)
T ss_dssp -----CEEEECTTCS-SCCEEEC--------------CHHHHHHHHHHHHHHHCSEEEEE-EETTTCSCHHH-HHHHHHH
T ss_pred CCccceEEEEEEECC-ceEEEEECCCCCCcc-----hhHHHHHHHHHHHHHHhCCEEEEE-EeCCCCCCHHH-HHHHHHH
Confidence 445555555555444 379999999986432 226678888999999998866555 45543222221 2344444
Q ss_pred CCCCCeEEEEeccchhh
Q psy8958 135 DPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 135 DP~G~RTIGVlTK~D~~ 151 (294)
...+.-.|-|++|+|+.
T Consensus 108 ~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 108 YRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp TTCCSCEEEEEECCCC-
T ss_pred HHcCCCEEEEEECccCc
Confidence 44567899999999974
No 25
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.14 E-value=0.076 Score=43.25 Aligned_cols=68 Identities=10% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT 146 (294)
-..++|+|+||.. ..+.+...|+++.+.+|+++-..+.+ +.+. ...++.+.....+...|-|+|
T Consensus 61 ~~~~~~~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 127 (186)
T 1ksh_A 61 GFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFAN 127 (186)
T ss_dssp TEEEEEEEECCSH-------------HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred CEEEEEEECCCCH-------------hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEe
Confidence 4679999999963 23567788999998777665543322 2221 112233333334678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 128 K~Dl 131 (186)
T 1ksh_A 128 KQDL 131 (186)
T ss_dssp CTTS
T ss_pred CccC
Confidence 9995
No 26
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.08 E-value=0.069 Score=42.23 Aligned_cols=68 Identities=10% Similarity=0.198 Sum_probs=42.8
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT 146 (294)
-..+.|+|+||... .+.+...|+.+.+.+|+++-..+.+ +.+. ....+.+.....+...|-|+|
T Consensus 43 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 109 (164)
T 1r8s_A 43 NISFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109 (164)
T ss_dssp SCEEEEEECCCCGG-------------GHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred CEEEEEEEcCCChh-------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEE
Confidence 36799999999632 3467788999998877765443321 2211 111222323334678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 110 K~Dl 113 (164)
T 1r8s_A 110 KQDL 113 (164)
T ss_dssp CTTS
T ss_pred CcCC
Confidence 9995
No 27
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.05 E-value=0.071 Score=42.35 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=43.6
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT 146 (294)
-..+.|+|+||... .+.+...|+++.+.+|+++-..+.+ +.. .....+.+.....+...|-|+|
T Consensus 50 ~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 116 (171)
T 1upt_A 50 NLKFQVWDLGGLTS-------------IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFAN 116 (171)
T ss_dssp TEEEEEEEECCCGG-------------GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred CEEEEEEECCCChh-------------hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEE
Confidence 46799999999642 2356778999888776665543321 221 1222344443345678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 117 K~Dl 120 (171)
T 1upt_A 117 KQDM 120 (171)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9995
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.3 Score=40.19 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=44.0
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-h-hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-E-RSNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-a-ns~al~lar~~DP~G~RTIGVlTK 147 (294)
...+.|+|+||... ...+...|++..+.+|+++-..+.+. . -...+...++..+.+...|-|+||
T Consensus 71 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK 137 (192)
T 2fg5_A 71 LHKFLIWDTAGQER-------------FHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137 (192)
T ss_dssp EEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEEcCCCchh-------------hHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 45799999999432 23456778888887776654433221 1 122344555666667889999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 138 ~Dl 140 (192)
T 2fg5_A 138 CDL 140 (192)
T ss_dssp GGG
T ss_pred ccc
Confidence 995
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.049 Score=43.83 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=40.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||... .+.+...|+.+.+.+|+++-..+.+ +.+ ...+..++...+.+...|-|+||.
T Consensus 60 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 126 (180)
T 2g6b_A 60 VKLQMWDTAGQER-------------FRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126 (180)
T ss_dssp EEEEEEECCCC---------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 4699999999321 2456778888888777765443321 111 233455555555678899999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 127 Dl~ 129 (180)
T 2g6b_A 127 DSA 129 (180)
T ss_dssp STT
T ss_pred ccC
Confidence 953
No 30
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.99 E-value=0.1 Score=42.31 Aligned_cols=88 Identities=16% Similarity=0.276 Sum_probs=51.5
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC-CCceE--EEeccCCCcchhc------
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN-PNAII--LCIQDGSVDAERS------ 125 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~-p~sII--LaV~~a~~D~ans------ 125 (294)
+++.++..+.+. .+.++|+||+.... +.+....+..+.+...|+.. .+.++ +.|++++. +.+.
T Consensus 33 ~~t~~~~~~~~~-----~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s-~~~~~~~~~~ 104 (190)
T 2cxx_A 33 GVTRKIIEIEWK-----NHKIIDMPGFGFMM--GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKA-APEIIKRWEK 104 (190)
T ss_dssp TCTTSCEEEEET-----TEEEEECCCBSCCT--TSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTH-HHHHHHHHHH
T ss_pred CccceeEEEecC-----CEEEEECCCccccc--cCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchh-hhhHHHhhhc
Confidence 344445555543 89999999976433 23445567788888888876 55433 34455432 2111
Q ss_pred -----HHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 126 -----NVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 126 -----~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
.-.++.+.....+...|.|+||+|+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (190)
T 2cxx_A 105 RGEIPIDVEFYQFLRELDIPTIVAVNKLDK 134 (190)
T ss_dssp TTCCCHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred cCccHHHHHHHHHHHhcCCceEEEeehHhc
Confidence 0011223333345779999999996
No 31
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.96 E-value=0.044 Score=43.43 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK 147 (294)
...+.|+|+||.-. .+.+...|+.+.+.+|+++-..+.+ +.+ ...+...+.........+-|.||
T Consensus 54 ~~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK 120 (170)
T 1z0j_A 54 LHKFLIWDTAGLER-------------FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120 (170)
T ss_dssp EEEEEEEEECCSGG-------------GGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred EEEEEEEcCCCchh-------------hhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 35699999999732 2356778888888777665443322 111 22345555555556778888899
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 121 ~Dl~ 124 (170)
T 1z0j_A 121 CDLT 124 (170)
T ss_dssp TTCG
T ss_pred Cccc
Confidence 9963
No 32
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.93 E-value=0.054 Score=51.95 Aligned_cols=89 Identities=17% Similarity=0.300 Sum_probs=52.7
Q ss_pred ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhh
Q psy8958 54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLV 131 (294)
Q Consensus 54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~la 131 (294)
.+++.+.+.-.+.-.+ ..++|+|+||+..... ..+.+.++.++..|++..+.||++ +++...+. .....++.
T Consensus 33 ~g~T~d~~~~~~~~~~-~~~~l~DT~G~~~~~~----~~~~~~~~~~~~~~~~~ad~il~V-~D~~~~~~~~d~~i~~~l 106 (439)
T 1mky_A 33 EGVTRDPVQDTVEWYG-KTFKLVDTCGVFDNPQ----DIISQKMKEVTLNMIREADLVLFV-VDGKRGITKEDESLADFL 106 (439)
T ss_dssp -----CCSEEEEEETT-EEEEEEECTTTTSSGG----GCCCHHHHHHHHHHHTTCSEEEEE-EETTTCCCHHHHHHHHHH
T ss_pred CCCccceeeEEEEECC-eEEEEEECCCcccccc----chHHHHHHHHHHHHHHhCCEEEEE-EECCCCCCHHHHHHHHHH
Confidence 3445454444443222 2589999999875321 223466788889999999866555 46554332 22344444
Q ss_pred hhcCCCCCeEEEEeccchhh
Q psy8958 132 SQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 132 r~~DP~G~RTIGVlTK~D~~ 151 (294)
++ .+...|-|++|+|+.
T Consensus 107 ~~---~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 107 RK---STVDTILVANKAENL 123 (439)
T ss_dssp HH---HTCCEEEEEESCCSH
T ss_pred HH---cCCCEEEEEeCCCCc
Confidence 44 356789999999964
No 33
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.90 E-value=0.088 Score=46.61 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=43.8
Q ss_pred eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC--CCceEEEeccCCC-cchh--cHHHHhhhhcC
Q psy8958 61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN--PNAIILCIQDGSV-DAER--SNVTDLVSQMD 135 (294)
Q Consensus 61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~--p~sIILaV~~a~~-D~an--s~al~lar~~D 135 (294)
....+...+. .++|+|+||+...... .+ ...+.+.+|+.. .. ++|.|.+.+. .+.. ...++..++.-
T Consensus 75 ~~~~~~~~~~-~l~liDTpG~~~~~~~--~~----~~~~~i~~~l~~~~~~-~il~V~~~d~~~~~~~~~~~~~~l~~~~ 146 (262)
T 3def_A 75 VMVSRTMGGF-TINIIDTPGLVEAGYV--NH----QALELIKGFLVNRTID-VLLYVDRLDVYAVDELDKQVVIAITQTF 146 (262)
T ss_dssp EEEEEEETTE-EEEEEECCCSEETTEE--CH----HHHHHHHHHTTTCEEC-EEEEEEESSCSCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEECCe-eEEEEECCCCCCcccc--hH----HHHHHHHHHHhcCCCC-EEEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 3444443333 8999999998764421 22 233344445543 34 4444533322 2332 24555555432
Q ss_pred CCC--CeEEEEeccchh
Q psy8958 136 PQG--KRTIFVLTKVSQ 150 (294)
Q Consensus 136 P~G--~RTIGVlTK~D~ 150 (294)
..+ ...|.|+||+|+
T Consensus 147 ~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 147 GKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp CGGGGGGEEEEEECTTC
T ss_pred chhhhcCEEEEEeCccc
Confidence 221 378999999995
No 34
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.87 E-value=0.14 Score=42.83 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=47.0
Q ss_pred ceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHH-HhhhhcCCCCceEEEeccCCCcchhcHHHH----hhhh-
Q psy8958 60 VISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQ-MTQTHMSNPNAIILCIQDGSVDAERSNVTD----LVSQ- 133 (294)
Q Consensus 60 ~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~-Lv~~Yi~~p~sIILaV~~a~~D~ans~al~----lar~- 133 (294)
...+.+.+.....|.|+|+||... .+. +...|+...+.+|+++-..+.+-....+.+ +.+.
T Consensus 43 ~~~~~~~~~~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 109 (214)
T 2fh5_B 43 SAIYKVNNNRGNSLTLIDLPGHES-------------LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS 109 (214)
T ss_dssp EEEEECSSTTCCEEEEEECCCCHH-------------HHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCccEEEEEECCCChh-------------HHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh
Confidence 334555554457799999999531 233 777888888877766544331111112222 2221
Q ss_pred -cCCCCCeEEEEeccchhh
Q psy8958 134 -MDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 134 -~DP~G~RTIGVlTK~D~~ 151 (294)
....+...|-|+||+|+.
T Consensus 110 ~~~~~~~piilv~nK~Dl~ 128 (214)
T 2fh5_B 110 MALKNSPSLLIACNKQDIA 128 (214)
T ss_dssp HTSTTCCEEEEEEECTTST
T ss_pred hhcccCCCEEEEEECCCCC
Confidence 234457899999999963
No 35
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.77 E-value=0.11 Score=43.54 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=42.7
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcC----CCCCeEEEEe
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMD----PQGKRTIFVL 145 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~D----P~G~RTIGVl 145 (294)
...|.|+|+||. +..+.+...|++..+.+|+++ +++....-..+......+- ..+...|.|+
T Consensus 83 ~~~l~l~Dt~G~-------------~~~~~~~~~~~~~~d~iilV~-D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~ 148 (217)
T 2f7s_A 83 KVHLQLWDTAGQ-------------ERFRSLTTAFFRDAMGFLLMF-DLTSQQSFLNVRNWMSQLQANAYCENPDIVLIG 148 (217)
T ss_dssp EEEEEEEEEESH-------------HHHHHHHHHHHTTCCEEEEEE-ETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEE
T ss_pred eEEEEEEECCCc-------------HhHHhHHHHHhcCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEE
Confidence 356999999992 334677888999888776655 4443222222223333332 1467889999
Q ss_pred ccchh
Q psy8958 146 TKVSQ 150 (294)
Q Consensus 146 TK~D~ 150 (294)
||.|+
T Consensus 149 NK~Dl 153 (217)
T 2f7s_A 149 NKADL 153 (217)
T ss_dssp ECTTC
T ss_pred ECCcc
Confidence 99995
No 36
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.71 E-value=0.079 Score=42.80 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=42.0
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCC-CCCeEEEEec
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDP-QGKRTIFVLT 146 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP-~G~RTIGVlT 146 (294)
..+.|+|+||.. ..+.+...|+++.+.+|+++-..+. ..-. ..+........ .+...|.|+|
T Consensus 70 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (195)
T 3bc1_A 70 IHLQLWDTAGLE-------------RFRSLTTAFFRDAMGFLLLFDLTNE-QSFLNVRNWISQLQMHAYSENPDIVLCGN 135 (195)
T ss_dssp EEEEEEEECCSG-------------GGHHHHHHTTTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSSSSSCCEEEEEE
T ss_pred EEEEEEeCCCcH-------------HHHHHHHHHHcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 479999999962 1345788899998877766544332 1111 22233333322 4678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 136 K~Dl 139 (195)
T 3bc1_A 136 KSDL 139 (195)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 9995
No 37
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.68 E-value=0.036 Score=53.41 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=44.2
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
.++|+|+||+.+........+-...++ ...|+...+.+| .|++++..+..++ .+++..+...|.-.|-|++|+|+.
T Consensus 244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~--~~~~~~~ad~~l-lviD~~~~~~~~~-~~~~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 244 EFVIVDTAGMRKKGKVYETTEKYSVLR--ALKAIDRSEVVA-VVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp EEEETTGGGTTTBTTBCCCCSHHHHHH--HHHHHHHCSEEE-EEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGS
T ss_pred eEEEEECCCCCcCcccchHHHHHHHHH--HHHHHhhCCEEE-EEEeCCCCcCHHH-HHHHHHHHHcCCCEEEEEEChhcC
Confidence 799999999987654322212111111 234677777554 4566665444333 233333333578899999999963
No 38
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.66 E-value=0.044 Score=43.09 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=41.0
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHH-HHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNV-TDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~a-l~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||... ...+...|+++.+.+|+++-..+.+ +.+ ... ..+.+.....+...|.|+||
T Consensus 51 ~~~~l~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 51 SVLEILDTAGTEQ-------------FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 4589999999421 1345667787778776665544321 111 111 12344445567889999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 118 ~Dl 120 (167)
T 1kao_A 118 VDL 120 (167)
T ss_dssp GGG
T ss_pred Ccc
Confidence 996
No 39
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.65 E-value=0.04 Score=43.78 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=39.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..|.|+|+||... .+.+...|+++.+.+|+++-..+.+- .+ ...+...+...+.+...+-|+||.
T Consensus 55 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 121 (170)
T 1z08_A 55 VNLAIWDTAGQER-------------FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKI 121 (170)
T ss_dssp EEEEEEECCCC--------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECG
T ss_pred EEEEEEECCCcHh-------------hhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECc
Confidence 4689999999321 23566778888887776654433221 11 122333444444457789999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 122 Dl~ 124 (170)
T 1z08_A 122 DLE 124 (170)
T ss_dssp GGG
T ss_pred ccc
Confidence 963
No 40
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.63 E-value=0.13 Score=45.76 Aligned_cols=70 Identities=19% Similarity=0.338 Sum_probs=42.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc--CCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM--SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi--~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||........ .. +.+...|+ ..+..+| .|++++. +. ..+.+..++-..+...|.|+||+
T Consensus 52 ~~~~l~DtpG~~~~~~~~----~~---e~v~~~~~~~~~~d~ii-~V~D~t~-~~--~~~~~~~~l~~~~~pvilv~NK~ 120 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSS----ID---EKIARDYLLKGDADLVI-LVADSVN-PE--QSLYLLLEILEMEKKVILAMTAI 120 (258)
T ss_dssp EEEEEEECCCCSSCCSSS----HH---HHHHHHHHHHSCCSEEE-EEEETTS-CH--HHHHHHHHHHTTTCCEEEEEECH
T ss_pred eEEEEEECCCcCccCCCC----HH---HHHHHHHHhhcCCCEEE-EEeCCCc-hh--hHHHHHHHHHhcCCCEEEEEECc
Confidence 579999999987543221 11 23455565 4666555 4555553 22 22334444444578899999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 121 Dl~ 123 (258)
T 3a1s_A 121 DEA 123 (258)
T ss_dssp HHH
T ss_pred CCC
Confidence 975
No 41
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.55 E-value=0.07 Score=43.71 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=41.0
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||... .+.+...|+++.+.+|+++-..+.+ +... ....+.+.....+...|-|+||
T Consensus 60 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 126 (187)
T 1zj6_A 60 TRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 126 (187)
T ss_dssp EEEEEEECCC-----------------CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred EEEEEEECCCCHh-------------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEEC
Confidence 6799999999732 2346678888888777665544332 2221 1123333333456889999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 127 ~Dl 129 (187)
T 1zj6_A 127 QDV 129 (187)
T ss_dssp TTS
T ss_pred CCC
Confidence 995
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.53 E-value=0.074 Score=41.75 Aligned_cols=67 Identities=6% Similarity=0.117 Sum_probs=41.3
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||... .+.+...|+...+.+|+++-..+.+ +.+ ...+ .+.+.....+...+.|+||
T Consensus 52 ~~~~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 118 (168)
T 1u8z_A 52 VQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118 (168)
T ss_dssp EEEEEEECCC----------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEEEEEECCCcch-------------hHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 4799999999321 2356778888888777666544321 111 1112 2333444457889999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 119 ~Dl 121 (168)
T 1u8z_A 119 SDL 121 (168)
T ss_dssp GGG
T ss_pred ccc
Confidence 996
No 43
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.39 E-value=0.065 Score=44.15 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=42.8
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT 146 (294)
...+.|+|+||.. ..+.+...|+++.+.+|+++-..+.+ +.. .....+.+.....+...|.|+|
T Consensus 66 ~~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 132 (188)
T 1zd9_A 66 NVTIKLWDIGGQP-------------RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132 (188)
T ss_dssp TEEEEEEEECCSH-------------HHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEE
T ss_pred CEEEEEEECCCCH-------------hHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEE
Confidence 4578999999943 23457788898888777665443321 221 1112333333335677999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|+|+
T Consensus 133 K~Dl 136 (188)
T 1zd9_A 133 KRDL 136 (188)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9995
No 44
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.29 E-value=0.05 Score=44.45 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=42.3
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||... .+.+...|+++.+.+|+++-..+.+ +... ....+.+.....+...|-|+||
T Consensus 65 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 131 (181)
T 2h17_A 65 TRFLMWDIGGQES-------------LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 131 (181)
T ss_dssp EEEEEEEESSSGG-------------GTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEEC
Confidence 6899999999743 2345678999888776665443321 2211 1122333333456889999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 132 ~Dl 134 (181)
T 2h17_A 132 QDV 134 (181)
T ss_dssp TTS
T ss_pred CCc
Confidence 995
No 45
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.27 E-value=0.096 Score=42.38 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=43.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||... .+.+...|+++.+.+|+++-..+.+- .+ ...+...+.....+...|.|+||+
T Consensus 59 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 125 (186)
T 2bme_A 59 VKLQIWDTAGQER-------------FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125 (186)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 4799999999421 24578889999987776665443211 11 122333455545567899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 126 Dl 127 (186)
T 2bme_A 126 DL 127 (186)
T ss_dssp GG
T ss_pred cc
Confidence 96
No 46
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.05 E-value=0.13 Score=42.16 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=42.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHH-HHhhhhcCCCCceEEEeccCCCc-chh-cHHHH-hhhhcCCCCCeEEEEec
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIR-QMTQTHMSNPNAIILCIQDGSVD-AER-SNVTD-LVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~-~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~-lar~~DP~G~RTIGVlT 146 (294)
..++|+|+||.- ..+ .+...|+++.+.+|+++-..+.+ +.+ ...+. +.+.....+...|-|+|
T Consensus 69 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~n 135 (189)
T 1z06_A 69 IKIQLWDTAGQE-------------RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135 (189)
T ss_dssp EEEEEEECCCSH-------------HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEE
T ss_pred EEEEEEECCCch-------------hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 579999999932 233 67888999888776655443321 111 11222 33334455678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|+|+
T Consensus 136 K~Dl 139 (189)
T 1z06_A 136 KCDL 139 (189)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 9995
No 47
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.02 E-value=0.069 Score=42.64 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=42.3
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||... .+.+...|+++.+.+|+++-..+.+. .+ ...+...+.....+...|.|+||.
T Consensus 64 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 130 (179)
T 1z0f_A 64 IKLQIWDTAGQER-------------FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130 (179)
T ss_dssp EEEEEEECTTGGG-------------TCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEECCCChH-------------hhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 4699999999321 23467788888887766554433211 11 122334555554567899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 131 Dl 132 (179)
T 1z0f_A 131 DL 132 (179)
T ss_dssp TC
T ss_pred cc
Confidence 95
No 48
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.99 E-value=0.065 Score=44.42 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=43.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..++|+|+||... ...+...|+++.+.+|+++-..+.+ +.+ ...+...+...+.+...|-|+||+
T Consensus 75 ~~l~l~Dt~G~~~-------------~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~ 141 (192)
T 2il1_A 75 IRLQIWDTAGQER-------------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKL 141 (192)
T ss_dssp EEEEEEEECCSGG-------------GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEEeCCCcHH-------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 5699999999321 2356677888888766655433321 111 122456666667778899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 142 Dl 143 (192)
T 2il1_A 142 DC 143 (192)
T ss_dssp GG
T ss_pred cc
Confidence 96
No 49
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.89 E-value=0.052 Score=45.11 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=43.5
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..++|+|+||.... +.+...|+...+.+|+++-..+.+ +.. ...+..++...+.+...|.|+||+
T Consensus 69 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 135 (213)
T 3cph_A 69 VKLQLWDTAGQERF-------------RTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135 (213)
T ss_dssp EEEEEECCTTGGGG-------------TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECT
T ss_pred EEEEEEeCCCcHHH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 46999999994332 234677888888777665443321 111 233455555556678899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 136 Dl 137 (213)
T 3cph_A 136 DM 137 (213)
T ss_dssp TC
T ss_pred CC
Confidence 95
No 50
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.87 E-value=0.088 Score=43.10 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=42.5
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHH-Hhhhh-----c--CCCC
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVT-DLVSQ-----M--DPQG 138 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al-~lar~-----~--DP~G 138 (294)
....+.|+|+||... .+.+...|++..+.+|+++-..+.+ +.+. ..+ .+.+. . +..+
T Consensus 61 ~~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (199)
T 4bas_A 61 GRVAFTVFDMGGAKK-------------FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR 127 (199)
T ss_dssp TTEEEEEEEECCSGG-------------GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCB
T ss_pred CCEEEEEEECCCCHh-------------HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCC
Confidence 345799999999632 2457778999998777766554432 2211 112 22221 1 1125
Q ss_pred CeEEEEeccchh
Q psy8958 139 KRTIFVLTKVSQ 150 (294)
Q Consensus 139 ~RTIGVlTK~D~ 150 (294)
.-.|.|+||.|+
T Consensus 128 ~piilv~NK~Dl 139 (199)
T 4bas_A 128 VPFLFFANKMDA 139 (199)
T ss_dssp CCEEEEEECTTS
T ss_pred CCEEEEEECcCC
Confidence 678999999995
No 51
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.79 E-value=0.036 Score=43.96 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=41.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||.... ..+...|+++.+.+|+++-..+.+ +.+ ...+...+...+.+...|.|+||.
T Consensus 52 ~~~~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 118 (170)
T 1g16_A 52 VKLQIWDTAGQERF-------------RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 118 (170)
T ss_dssp EEEEEECCTTGGGT-------------SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEeCCCChhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECc
Confidence 46899999994332 234567888877666655443321 111 233444555555567899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 119 Dl 120 (170)
T 1g16_A 119 DM 120 (170)
T ss_dssp TC
T ss_pred cC
Confidence 95
No 52
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=92.78 E-value=0.23 Score=47.80 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=49.4
Q ss_pred ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--------hhc
Q psy8958 54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--------ERS 125 (294)
Q Consensus 54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--------ans 125 (294)
.+++-+.....+..++. .++|+|+||.. +.+ ..+..|++..+.+||+|-...-.+ .+.
T Consensus 79 ~GiTid~~~~~~~~~~~-~~~iiDTPGh~------------~f~-~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~ 144 (439)
T 3j2k_7 79 KGKTVEVGRAYFETEKK-HFTILDAPGHK------------SFV-PNMIGGASQADLAVLVISARKGEFETGFEKGGQTR 144 (439)
T ss_pred cCceEEEeEEEEecCCe-EEEEEECCChH------------HHH-HHHHhhHhhCCEEEEEEECCCCccccccCCCchHH
Confidence 34555555555555554 89999999942 223 344556777786666554433222 344
Q ss_pred HHHHhhhhcCCCCCe-EEEEeccchh
Q psy8958 126 NVTDLVSQMDPQGKR-TIFVLTKVSQ 150 (294)
Q Consensus 126 ~al~lar~~DP~G~R-TIGVlTK~D~ 150 (294)
+.+.+++.. |.. .|-|+||.|+
T Consensus 145 e~l~~~~~~---~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 145 EHAMLAKTA---GVKHLIVLINKMDD 167 (439)
T ss_pred HHHHHHHHc---CCCeEEEEeecCCC
Confidence 555666654 444 8999999996
No 53
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.78 E-value=0.11 Score=42.95 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK 147 (294)
...+.|+|+||... .+.+...|+++.+.+|+++-..+.+ +.+ ...+...+...+.+...|.|+||
T Consensus 56 ~~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (203)
T 1zbd_A 56 RIKLQIWDTAGLER-------------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNK 122 (203)
T ss_dssp EEEEEEEEECCSGG-------------GHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEEC
T ss_pred EEEEEEEECCCchh-------------hcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 35799999999632 2457788999888776665443321 111 12334455555566889999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 123 ~Dl 125 (203)
T 1zbd_A 123 CDM 125 (203)
T ss_dssp TTC
T ss_pred ccc
Confidence 996
No 54
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.77 E-value=0.66 Score=37.70 Aligned_cols=74 Identities=11% Similarity=0.196 Sum_probs=42.7
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
.+.++|+||+.... ......--.....|+...+.+|+++ +++. .......+...++..+.+.-.|.|+||+|
T Consensus 53 ~~~l~Dt~G~~~~~-----~~~~~~~~~~~~~~~~~ad~~i~v~-D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 53 PLHIIDTAGLREAS-----DEVERIGIERAWQEIEQADRVLFMV-DGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp EEEEEECCCCSCCS-----SHHHHHHHHHHHHHHHTCSEEEEEE-ETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred EEEEEECCCcccch-----hHHHHHHHHHHHHHHHhCCEEEEEE-ECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 48999999986432 1111111111335677777665554 4432 22233445555555555677999999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 127 l~ 128 (172)
T 2gj8_A 127 IT 128 (172)
T ss_dssp HH
T ss_pred CC
Confidence 63
No 55
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.76 E-value=0.057 Score=44.16 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||.... +.+...|+...+.+|+++-..+.+- .-...+.....+-+.+...|-|+||.
T Consensus 65 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~ 131 (196)
T 3tkl_A 65 IKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 131 (196)
T ss_dssp EEEEEEEECCSGGG-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEECCCcHhh-------------hhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 47999999994321 2456778888887776654443211 11223445555656678899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 132 Dl 133 (196)
T 3tkl_A 132 DL 133 (196)
T ss_dssp TC
T ss_pred cc
Confidence 95
No 56
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.75 E-value=0.1 Score=42.65 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=42.9
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT 146 (294)
-..+.++|+||..... .+...|+++.+.+|+++-..+.+ +.+ ....++.+.....+...|-|+|
T Consensus 65 ~~~~~~~Dt~G~~~~~-------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~n 131 (189)
T 2x77_A 65 NISFEVWDLGGQTGVR-------------PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFAN 131 (189)
T ss_dssp TEEEEEEEECCSSSSC-------------CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEE
T ss_pred CEEEEEEECCCCHhHH-------------HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEE
Confidence 4679999999964322 23567888888777665443321 221 1223344444455778999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 132 K~Dl 135 (189)
T 2x77_A 132 KQDL 135 (189)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9995
No 57
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.74 E-value=0.087 Score=41.54 Aligned_cols=68 Identities=9% Similarity=0.036 Sum_probs=41.4
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHH---HHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNV---TDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~a---l~lar~~DP~G~RTIGVlT 146 (294)
...+.|+|+||... ...+...|+++.+.+|+++-..+. ..-..+ +....+.-..+...+.|+|
T Consensus 51 ~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~n 116 (170)
T 1ek0_A 51 TVKFEIWDTAGQER-------------FASLAPXYYRNAQAALVVYDVTKP-QSFIKARHWVKELHEQASKDIIIALVGN 116 (170)
T ss_dssp EEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEEEECCCChh-------------hhhhhhhhhccCcEEEEEEecCCh-HHHHHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 34799999999432 234577888888877666544332 111122 2233333344577889999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|.|+.
T Consensus 117 K~Dl~ 121 (170)
T 1ek0_A 117 KIDXL 121 (170)
T ss_dssp CGGGG
T ss_pred CCCcc
Confidence 99963
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.72 E-value=0.13 Score=41.07 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHH----hhhhcCCCCCeEEEE
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTD----LVSQMDPQGKRTIFV 144 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~----lar~~DP~G~RTIGV 144 (294)
..+.|+|+||.. ..+.+...|++..+.+|+++...+.+ +.+ ...+. .+......+...|.|
T Consensus 56 ~~~~i~Dt~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v 122 (177)
T 1wms_A 56 VTMQIWDTAGQE-------------RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122 (177)
T ss_dssp EEEEEEECCCCG-------------GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEE
T ss_pred EEEEEEeCCCch-------------hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEE
Confidence 469999999932 13467788999988777665544322 111 11122 222222356788999
Q ss_pred eccchh
Q psy8958 145 LTKVSQ 150 (294)
Q Consensus 145 lTK~D~ 150 (294)
+||+|+
T Consensus 123 ~nK~Dl 128 (177)
T 1wms_A 123 GNKIDI 128 (177)
T ss_dssp EECTTC
T ss_pred EECCcc
Confidence 999995
No 59
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.68 E-value=0.1 Score=45.94 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=46.1
Q ss_pred cccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhc-C
Q psy8958 57 SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQM-D 135 (294)
Q Consensus 57 S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~-D 135 (294)
+..+....+... -..++|+|+||+........ ++....+..-+..+...++.+|+++-..........+++..++. .
T Consensus 57 T~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~-~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~ 134 (247)
T 3lxw_A 57 TRACTTGSRRWD-KCHVEVVDTPDIFSSQVSKT-DPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG 134 (247)
T ss_dssp CCSCEEEEEEET-TEEEEEEECCSCSSTTHHHH-STTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC
T ss_pred cccEEEEEEEEC-CcEEEEEECCCCCCCCCCcH-HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 334444434333 35699999999974332110 11122222222333477886665554432222334455555553 2
Q ss_pred CC--CCeEEEEeccchh
Q psy8958 136 PQ--GKRTIFVLTKVSQ 150 (294)
Q Consensus 136 P~--G~RTIGVlTK~D~ 150 (294)
+. +.-.|.|.+|.|+
T Consensus 135 ~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 135 EDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp GGGGGGEEEEEECGGGG
T ss_pred hhhhccEEEEEEchHhc
Confidence 22 3456677788875
No 60
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.67 E-value=0.28 Score=41.76 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=39.9
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCC--CCeEEEEe
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQ--GKRTIFVL 145 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~--G~RTIGVl 145 (294)
...+.|+|+||....+......... ..+..|....+++| .|.+++.. +.......+.+.+... +...|.|+
T Consensus 75 ~~~~~l~DtpG~~~~~~~~~~~~~~----~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~ 149 (228)
T 2qu8_A 75 LNKYQIIDTPGLLDRAFENRNTIEM----TTITALAHINGVIL-FIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGF 149 (228)
T ss_dssp TEEEEEEECTTTTTSCGGGCCHHHH----HHHHHHHTSSEEEE-EEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEE
T ss_pred CCeEEEEECCCCcCcccchhhhHHH----HHHHHhhccccEEE-EEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEE
Confidence 3579999999986543211111111 12234555556544 45555532 2212223333333222 56799999
Q ss_pred ccchh
Q psy8958 146 TKVSQ 150 (294)
Q Consensus 146 TK~D~ 150 (294)
||+|+
T Consensus 150 nK~Dl 154 (228)
T 2qu8_A 150 NKIDK 154 (228)
T ss_dssp ECGGG
T ss_pred eCccc
Confidence 99996
No 61
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.65 E-value=0.071 Score=42.90 Aligned_cols=68 Identities=6% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHH-HhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVT-DLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al-~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||... ...+...|+...+.+|+++-..+.+- .+ ...+ .+.+.....+...|.|+||
T Consensus 66 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 132 (187)
T 2a9k_A 66 VQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132 (187)
T ss_dssp EEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEEC
T ss_pred EEEEEEECCCCcc-------------cHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 4799999999432 13566778888887776665443211 11 1111 2333444456789999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 133 ~Dl~ 136 (187)
T 2a9k_A 133 SDLE 136 (187)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9963
No 62
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.61 E-value=0.18 Score=41.37 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=43.2
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh---cHHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER---SNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an---s~al~lar~~DP~G~RTIGVlT 146 (294)
...++|+|+||.... +.+...|+++.+.+|+++ +++....- ...+.........+...|.|+|
T Consensus 73 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~-D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~n 138 (193)
T 2oil_A 73 AVKAQIWDTAGLERY-------------RAITSAYYRGAVGALLVF-DLTKHQTYAVVERWLKELYDHAEATIVVMLVGN 138 (193)
T ss_dssp EEEEEEEEESCCCTT-------------CTTHHHHHTTCCEEEEEE-ETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred EEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 357899999997432 245667888888776664 44321111 1233444444455678999999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|+|+.
T Consensus 139 K~Dl~ 143 (193)
T 2oil_A 139 KSDLS 143 (193)
T ss_dssp CGGGG
T ss_pred CCCcc
Confidence 99963
No 63
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.57 E-value=0.081 Score=44.41 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=38.6
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCC----CCceEEEeccCCC---cchh--cHHHHhhhhc---CC
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSN----PNAIILCIQDGSV---DAER--SNVTDLVSQM---DP 136 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~----p~sIILaV~~a~~---D~an--s~al~lar~~---DP 136 (294)
....|.|+|+||.... +.+...|+.. .+.+|++ ++++. .+.. ....++.... .+
T Consensus 53 ~~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~~~~~~~~i~v-~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKL-------------RYKLSDYLKTRAKFVKGLIFM-VDSTVDPKKLTTTAEFLVDILSITESSCE 118 (218)
T ss_dssp GGSSCEEEECCCCGGG-------------THHHHHHHHHHGGGEEEEEEE-EETTSCTTCCHHHHHHHHHHHHHHHHHST
T ss_pred eCceEEEEECCCcHHH-------------HHHHHHHHHhccccCCEEEEE-EECCCChHHHHHHHHHHHHHHhccccccc
Confidence 4468999999997332 2334445443 5666554 44442 2221 1111222211 45
Q ss_pred CCCeEEEEeccchhh
Q psy8958 137 QGKRTIFVLTKVSQQ 151 (294)
Q Consensus 137 ~G~RTIGVlTK~D~~ 151 (294)
.+...|.|+||+|+.
T Consensus 119 ~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 119 NGIDILIACNKSELF 133 (218)
T ss_dssp TCCCEEEEEECTTST
T ss_pred CCCCEEEEEEchHhc
Confidence 678899999999963
No 64
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.52 E-value=0.064 Score=44.60 Aligned_cols=68 Identities=12% Similarity=0.160 Sum_probs=41.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..++|+|+||.-. .+.+...|++..+.+|+++-..+.+ +.+ ...+...+.....+...|.|+||.
T Consensus 77 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 143 (199)
T 2p5s_A 77 TVLQLWDTAGQER-------------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143 (199)
T ss_dssp EEEEEEECTTCTT-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECG
T ss_pred EEEEEEECCCCcc-------------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 4699999999421 2356777888888777665443321 111 123445555555567899999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 144 Dl~ 146 (199)
T 2p5s_A 144 DIR 146 (199)
T ss_dssp GGH
T ss_pred ccc
Confidence 964
No 65
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.50 E-value=0.079 Score=44.07 Aligned_cols=68 Identities=12% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT 146 (294)
...+.|+|+||... .+.+...|+++.+.+|+++-..+.+ +.+. ...++.+.....+.-.|-|+|
T Consensus 72 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~N 138 (192)
T 2b6h_A 72 NICFTVWDVGGQDK-------------IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFAN 138 (192)
T ss_dssp TEEEEEEECC------------------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEE
T ss_pred CEEEEEEECCCCHh-------------HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEE
Confidence 36799999999632 2345667888888777655433321 1111 111233333334678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|+|+
T Consensus 139 K~Dl 142 (192)
T 2b6h_A 139 KQDM 142 (192)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 9995
No 66
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=92.47 E-value=0.3 Score=47.29 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=52.6
Q ss_pred cccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCC
Q psy8958 57 SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDP 136 (294)
Q Consensus 57 S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP 136 (294)
+-++....+.-.+...+.|+|+||+.....-++. . . +-...|+...+.+|+++ ++...-.....++.+++.
T Consensus 69 T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~-~-~----~~~~~~l~~aD~vllVv-D~~~~~~~~~~l~~l~~~-- 139 (423)
T 3qq5_A 69 TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRL-R-V----EKARRVFYRADCGILVT-DSAPTPYEDDVVNLFKEM-- 139 (423)
T ss_dssp -CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCC-C-H----HHHHHHHTSCSEEEEEC-SSSCCHHHHHHHHHHHHT--
T ss_pred eeeeEEEEEEECCCCeEEEEECcCCCcccchhHH-H-H----HHHHHHHhcCCEEEEEE-eCCChHHHHHHHHHHHhc--
Confidence 3344444444444558999999999865432221 1 1 11445777777665554 665444455666777776
Q ss_pred CCCeEEEEeccchhh
Q psy8958 137 QGKRTIFVLTKVSQQ 151 (294)
Q Consensus 137 ~G~RTIGVlTK~D~~ 151 (294)
+...|.|+||.|+.
T Consensus 140 -~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 140 -EIPFVVVVNKIDVL 153 (423)
T ss_dssp -TCCEEEECCCCTTT
T ss_pred -CCCEEEEEeCcCCC
Confidence 57799999999964
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.47 E-value=0.098 Score=42.13 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=44.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||.... +.+...|++..+.+|+++-..+.+ +.+. ..+...++..+ +...|.|+||
T Consensus 53 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 118 (186)
T 1mh1_A 53 VNLGLWDTAGQEDY-------------DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 118 (186)
T ss_dssp EEEEEECCCCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEEC
T ss_pred EEEEEEECCCCHhH-------------HHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEc
Confidence 46889999997432 356677888888777665543321 2222 24455555555 5778999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 119 ~Dl~ 122 (186)
T 1mh1_A 119 LDLR 122 (186)
T ss_dssp HHHH
T ss_pred cccc
Confidence 9964
No 68
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.46 E-value=0.07 Score=43.83 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=41.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCC--CCCeEEEEe
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDP--QGKRTIFVL 145 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP--~G~RTIGVl 145 (294)
..+.|+|+||... .+.+...|+++.+.+|+++-..+.+ +.. .....+.+.... .+...|.|+
T Consensus 67 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~ 133 (190)
T 2h57_A 67 LSFTVFDMSGQGR-------------YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA 133 (190)
T ss_dssp CEEEEEEECCSTT-------------TGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEE
T ss_pred EEEEEEECCCCHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEE
Confidence 6899999999432 2356678898888776655443321 222 112233333332 567899999
Q ss_pred ccchh
Q psy8958 146 TKVSQ 150 (294)
Q Consensus 146 TK~D~ 150 (294)
||+|+
T Consensus 134 nK~Dl 138 (190)
T 2h57_A 134 NKMDL 138 (190)
T ss_dssp ECTTS
T ss_pred eCcCc
Confidence 99995
No 69
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=92.46 E-value=0.18 Score=49.07 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=51.7
Q ss_pred ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--------chhc
Q psy8958 54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--------AERS 125 (294)
Q Consensus 54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--------~ans 125 (294)
.+++-+.....+..++ ..++|+|+||... ...++..|++..+.+||+|-..+-+ ..+.
T Consensus 95 ~GiTi~~~~~~~~~~~-~~~~iiDTPG~~~-------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~ 160 (483)
T 3p26_A 95 RGVTVSICTSHFSTHR-ANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTK 160 (483)
T ss_dssp CCSSCCCCEEEEECSS-CEEEEECCCCCGG-------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHH
T ss_pred cCcceEeeeEEEecCC-ceEEEEECCCcHH-------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHH
Confidence 3556666666666654 5799999999732 2355667788888776666544422 1233
Q ss_pred HHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 126 NVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 126 ~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
+.+.+++...- ...|-|+||+|+.
T Consensus 161 e~~~~~~~~~~--~~iIvviNK~Dl~ 184 (483)
T 3p26_A 161 EHMLLASSLGI--HNLIIAMNKMDNV 184 (483)
T ss_dssp HHHHHHHHTTC--CCEEEEEECGGGG
T ss_pred HHHHHHHHcCC--CcEEEEEECcCcc
Confidence 44555655431 3489999999964
No 70
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.42 E-value=0.092 Score=43.22 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=49.4
Q ss_pred eEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch-hcHHHHhhhhcCCCC
Q psy8958 61 ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE-RSNVTDLVSQMDPQG 138 (294)
Q Consensus 61 I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a-ns~al~lar~~DP~G 138 (294)
..+.+.+. ...+.|+|+|| .+..+.+...|++..+.+|+++-..+.+ +. -...+...+...+.+
T Consensus 63 ~~~~~~~~-~~~~~i~Dt~G-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 128 (191)
T 3dz8_A 63 KTVYRHEK-RVKLQIWDTAG-------------QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN 128 (191)
T ss_dssp EEEEETTT-TEEEEEECHHH-------------HHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred EEEEECCE-EEEEEEEeCCC-------------hHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 33444333 35699999999 2344577888999988777665443321 11 123445566666667
Q ss_pred CeEEEEeccchh
Q psy8958 139 KRTIFVLTKVSQ 150 (294)
Q Consensus 139 ~RTIGVlTK~D~ 150 (294)
...|-|+||.|+
T Consensus 129 ~piilv~nK~Dl 140 (191)
T 3dz8_A 129 AQVILVGNKCDM 140 (191)
T ss_dssp CEEEEEEECTTC
T ss_pred CCEEEEEECCCC
Confidence 889999999995
No 71
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.36 E-value=0.13 Score=42.88 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=42.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||.. ....+...|++..+.+|+++-..+.+ +.+ ...+..++.....+.-.|.|+||+
T Consensus 74 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 140 (200)
T 2o52_A 74 VKLQIWDTAGQE-------------RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKK 140 (200)
T ss_dssp EEEEEECCTTHH-------------HHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECG
T ss_pred eEEEEEcCCCcH-------------hHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 579999999932 23456778888888777666444322 111 122333444444567899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 141 Dl 142 (200)
T 2o52_A 141 DL 142 (200)
T ss_dssp GG
T ss_pred Cc
Confidence 96
No 72
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.36 E-value=0.057 Score=43.15 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=41.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||... ...+...|+.+.+.+|+++-..+.+ +.. ...+...+...+.+...|.|+||.
T Consensus 63 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 129 (179)
T 2y8e_A 63 VRLQLWDTAGQER-------------FRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129 (179)
T ss_dssp EEEEEEEECCSGG-------------GGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECG
T ss_pred EEEEEEECCCcHH-------------HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 4699999999432 2245667888888766655443321 111 122333334334557789999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 130 Dl~ 132 (179)
T 2y8e_A 130 DLS 132 (179)
T ss_dssp GGG
T ss_pred ccc
Confidence 963
No 73
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.32 E-value=0.16 Score=42.99 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=44.6
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||.. ..+.+...|++..+.+|+++-..+.+ +.+ ...+...+...+.+.-.|.|.||+
T Consensus 75 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 141 (201)
T 2ew1_A 75 VKLQIWDTAGQE-------------RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKI 141 (201)
T ss_dssp EEEEEEEECCSG-------------GGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECG
T ss_pred EEEEEEECCCcH-------------HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 469999999942 13467889999988777665443321 111 233455555556667789999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 142 Dl~ 144 (201)
T 2ew1_A 142 DLA 144 (201)
T ss_dssp GGG
T ss_pred CCc
Confidence 963
No 74
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.17 E-value=0.14 Score=41.73 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=35.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhc-CCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQM-DPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~-DP~G~RTIGVlTK 147 (294)
..+.|+|+||.. ....+...|++....+|+++...+.+ +.. ...+...+.. ...+...|.|+||
T Consensus 69 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK 135 (190)
T 3con_A 69 CLLDILDTAGQE-------------EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNK 135 (190)
T ss_dssp EEEEEEECCC------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEC
T ss_pred EEEEEEECCChH-------------HHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 469999999932 22356778998888777655443321 111 1222333333 3346789999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 136 ~Dl 138 (190)
T 3con_A 136 CDL 138 (190)
T ss_dssp TTC
T ss_pred CcC
Confidence 995
No 75
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.98 E-value=0.16 Score=41.05 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=35.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||... .+.+...|+++...+|+++-..+.+ +.+ ...+..++...+.+...|-|+||.
T Consensus 57 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (183)
T 2fu5_C 57 IKLQIWDTAGQER-------------FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123 (183)
T ss_dssp EEEEEEEC----------------------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC-
T ss_pred EEEEEEcCCCChh-------------hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 5699999999432 2456778888888777655443321 111 123344444444467889999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 124 Dl 125 (183)
T 2fu5_C 124 DV 125 (183)
T ss_dssp -C
T ss_pred cC
Confidence 95
No 76
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.94 E-value=0.083 Score=42.36 Aligned_cols=65 Identities=12% Similarity=0.270 Sum_probs=41.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
..++|+|+||..... .+...|+...+.+|+++ +++.. .....++..+.+...+...|.|+||.|+
T Consensus 55 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~-d~~~~-~~~~~~~~l~~~~~~~~p~ilv~nK~Dl 119 (178)
T 2lkc_A 55 KKITFLDTPGHEAFT-------------TMRARGAQVTDIVILVV-AADDG-VMPQTVEAINHAKAANVPIIVAINKMDK 119 (178)
T ss_dssp EEEEESCCCSSSSSS-------------CSCCSSCCCCCEEEEEE-ETTCC-CCHHHHHHHHHHGGGSCCEEEEEETTTS
T ss_pred ceEEEEECCCCHHHH-------------HHHHHHHhhCCEEEEEE-ECCCC-CcHHHHHHHHHHHhCCCCEEEEEECccC
Confidence 357899999964322 23457788788777666 44322 2234444445544446779999999995
No 77
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.86 E-value=0.075 Score=43.79 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=42.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||.... +.+...|+++.+.+|+++-..+.+ +.+ ...+..++.....+.-.|-|+||.
T Consensus 70 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~ 136 (191)
T 2a5j_A 70 IKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKS 136 (191)
T ss_dssp EEEEEECCTTGGGT-------------SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEECCCchhh-------------hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 47999999994321 235677888888777665543322 111 223444555555567889999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 137 Dl 138 (191)
T 2a5j_A 137 DL 138 (191)
T ss_dssp TC
T ss_pred cc
Confidence 95
No 78
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.85 E-value=0.082 Score=42.70 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=40.1
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hh-cHHHH-hhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ER-SNVTD-LVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-an-s~al~-lar~~DP~G~RTIGVlT 146 (294)
...|.|+|+||... ...+...|+...+.+|+++...+.+- .. ...+. +.+.....+...|.|+|
T Consensus 51 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~n 117 (189)
T 4dsu_A 51 TCLLDILDTAGQEE-------------YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGN 117 (189)
T ss_dssp EEEEEEEECCCC----------------CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEE
T ss_pred EEEEEEEECCCcHH-------------HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 34588999999432 22456677888887766655443211 11 11222 33334455678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 118 K~Dl 121 (189)
T 4dsu_A 118 KCDL 121 (189)
T ss_dssp CTTS
T ss_pred CccC
Confidence 9995
No 79
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.85 E-value=0.092 Score=42.40 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=38.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK 147 (294)
..++++|+||.... +.+...|+++.+.+|+++-..+.+ +.. .....+.+.....+...|.|+||
T Consensus 62 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 128 (183)
T 1moz_A 62 LKLNVWDLGGQTSI-------------RPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 128 (183)
T ss_dssp EEEEEEEEC----C-------------CTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEEC
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEEC
Confidence 67999999997542 234567888887666655433321 111 11222333333556789999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 129 ~Dl 131 (183)
T 1moz_A 129 QDQ 131 (183)
T ss_dssp TTS
T ss_pred CCC
Confidence 995
No 80
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.77 E-value=0.037 Score=46.08 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..++|+|+||.... ..+...|+++.+.+|+++-..+.+- .-...+.....+.+.+...|-|+||.
T Consensus 82 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~ 148 (199)
T 3l0i_B 82 IKLQIWDTAGQERF-------------RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKC 148 (199)
T ss_dssp EEEEEECCTTCTTC-------------CCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCS
T ss_pred EEEEEEECCCcHhH-------------HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECc
Confidence 46899999994322 2345678888887666554333211 11223445566666678899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 149 Dl 150 (199)
T 3l0i_B 149 DL 150 (199)
T ss_dssp SC
T ss_pred cC
Confidence 95
No 81
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.70 E-value=0.11 Score=48.17 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=42.3
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHH---HHhhhhcC-CCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEE
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIR---QMTQTHMS-NPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFV 144 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~---~Lv~~Yi~-~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGV 144 (294)
.-+++.|+|.||... . ...+.+.++ ..+.+.+. .|..++| |++|. ..+++++.++.+...-.-+-.|
T Consensus 185 ~~~dvvIiDtpg~~~--~---~~~l~~eL~~l~~~i~~~i~~~p~~vll-Vlda~---t~~~~l~~a~~~~~~~~i~gvV 255 (306)
T 1vma_A 185 RNKDVVIIDTAGRLH--T---KKNLMEELRKVHRVVKKKIPDAPHETLL-VIDAT---TGQNGLVQAKIFKEAVNVTGII 255 (306)
T ss_dssp TTCSEEEEEECCCCS--C---HHHHHHHHHHHHHHGGGTCTTCCSEEEE-EEEGG---GHHHHHHHHHHHHHHSCCCEEE
T ss_pred cCCCEEEEECCCchh--h---HHHHHHHHHHHHHHHhhccCCCCcEEEE-EEECC---CCHHHHHHHHHHHhcCCCCEEE
Confidence 357899999999521 1 123333333 33444444 3555554 55655 3466777777665443446668
Q ss_pred eccchh
Q psy8958 145 LTKVSQ 150 (294)
Q Consensus 145 lTK~D~ 150 (294)
+||.|.
T Consensus 256 lTk~D~ 261 (306)
T 1vma_A 256 LTKLDG 261 (306)
T ss_dssp EECGGG
T ss_pred EeCCCC
Confidence 999984
No 82
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.69 E-value=0.16 Score=40.00 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=40.3
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHH-hhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTD-LVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~-lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||..... .+...|+.+.+.+|+++...+.+ +.+ ...+. +.+.....+...|-|+||
T Consensus 51 ~~~~l~D~~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1c1y_A 51 CMLEILDTAGTEQFT-------------AMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117 (167)
T ss_dssp EEEEEEEECSSCSST-------------THHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEEC
T ss_pred EEEEEEECCChHHHH-------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEEC
Confidence 468999999954321 34556777778777665443321 111 11222 333334556789999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 118 ~Dl 120 (167)
T 1c1y_A 118 CDL 120 (167)
T ss_dssp TTC
T ss_pred ccc
Confidence 995
No 83
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.67 E-value=0.13 Score=41.36 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=41.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--h-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--R-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--n-s~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||... .+.+...|++..+.+|+++ +++.... + ...+...+.....+...|.|+||
T Consensus 61 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK 126 (181)
T 2efe_B 61 VKFEIWDTAGQER-------------YHSLAPMYYRGAAAAIIVF-DVTNQASFERAKKWVQELQAQGNPNMVMALAGNK 126 (181)
T ss_dssp EEEEEEECCCSGG-------------GGGGTHHHHTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCCChh-------------hhhhhHHHhccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 4799999999432 2346678888888776655 4442211 1 12233444444445778999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 127 ~Dl 129 (181)
T 2efe_B 127 SDL 129 (181)
T ss_dssp TTC
T ss_pred Ccc
Confidence 995
No 84
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.61 E-value=0.061 Score=43.03 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=41.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||.... ..+...|+...+.+|+++-..+.+ +.+ ...+ .+.+.....+...|.|+||
T Consensus 57 ~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (181)
T 2fn4_A 57 ARLDILDTAGQEEF-------------GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123 (181)
T ss_dssp EEEEEEECCCTTTT-------------SCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEEC
T ss_pred EEEEEEECCCchhh-------------HHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 46899999995422 234556777777776665433311 111 1111 3335556667889999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 124 ~Dl~ 127 (181)
T 2fn4_A 124 ADLE 127 (181)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9963
No 85
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.58 E-value=0.23 Score=38.69 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=40.6
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-h-hcHHHHhhhh-cCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-E-RSNVTDLVSQ-MDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-a-ns~al~lar~-~DP~G~RTIGVlT 146 (294)
...++++|+||.... ..+...|+...+.+|+++...+.+. . ....+...+. ....+...+.|+|
T Consensus 50 ~~~~~~~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~n 116 (166)
T 2ce2_X 50 TCLLDILDTAGQEEY-------------SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGN 116 (166)
T ss_dssp EEEEEEEECCCCSSC-------------CHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEE
T ss_pred EEEEEEEECCCchhh-------------hHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 356899999994321 1355677777887776665433211 1 1122233333 3334678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 117 K~Dl 120 (166)
T 2ce2_X 117 KSDL 120 (166)
T ss_dssp CTTC
T ss_pred chhh
Confidence 9995
No 86
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=91.50 E-value=0.7 Score=43.60 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=48.1
Q ss_pred cccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcHHHHhhhhcC
Q psy8958 57 SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSNVTDLVSQMD 135 (294)
Q Consensus 57 S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~al~lar~~D 135 (294)
+-+...+.+... -..++|+|+||.... ...+..|+...+.+||+|-+.+-. ..+.+.+.+++..
T Consensus 62 Ti~~~~~~~~~~-~~~~~iiDtpG~~~f-------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~- 126 (405)
T 2c78_A 62 TINTAHVEYETA-KRHYSHVDCPGHADY-------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV- 126 (405)
T ss_dssp CCSCEEEEEECS-SCEEEEEECCCSGGG-------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-
T ss_pred CEEeeeeEeccC-CeEEEEEECCChHHH-------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-
Confidence 333344455543 357999999996531 244556778888777666544322 2244455666654
Q ss_pred CCCCe-EEEEeccchhh
Q psy8958 136 PQGKR-TIFVLTKVSQQ 151 (294)
Q Consensus 136 P~G~R-TIGVlTK~D~~ 151 (294)
|.. -|.|+||.|+.
T Consensus 127 --~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 127 --GVPYIVVFMNKVDMV 141 (405)
T ss_dssp --TCCCEEEEEECGGGC
T ss_pred --CCCEEEEEEECcccc
Confidence 445 67999999964
No 87
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.39 E-value=0.27 Score=40.13 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=43.7
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK 147 (294)
...+.|+|+||.-.. +.+...|++..+.+|+++-..+.+ +.+ ...+...+...+.+...|.|+||
T Consensus 70 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 136 (189)
T 2gf9_A 70 RIKLQIWDTAGQERY-------------RTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNK 136 (189)
T ss_dssp EEEEEEEECCSCCSS-------------CCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEEeCCCcHHH-------------hhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 347999999995322 234678888888776665443321 111 12344555555567889999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 137 ~Dl 139 (189)
T 2gf9_A 137 CDL 139 (189)
T ss_dssp TTC
T ss_pred ccc
Confidence 995
No 88
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.34 E-value=0.24 Score=41.38 Aligned_cols=67 Identities=15% Similarity=0.120 Sum_probs=43.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||... .+.+...|+++.+.+|+++-..+.+ +.+ ...+...+...+.+.-.|-|+||.
T Consensus 78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 144 (201)
T 2hup_A 78 VKLQIWDTAGQER-------------FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144 (201)
T ss_dssp EEEEEECCTTCGG-------------GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEECCCcHh-------------HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 5799999999421 2457788999888777765443321 111 123344445445567889999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 145 Dl 146 (201)
T 2hup_A 145 DL 146 (201)
T ss_dssp TC
T ss_pred cc
Confidence 95
No 89
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.34 E-value=0.41 Score=43.12 Aligned_cols=84 Identities=25% Similarity=0.271 Sum_probs=48.3
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcchhcHHHHhhh
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAERSNVTDLVS 132 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~ans~al~lar 132 (294)
+++-+.....+.+ ...+.|+|+||........ . . +.+...|+. .+..+ +.|++++. ... .+.+..
T Consensus 35 g~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~--~--~---e~v~~~~~~~~~~d~v-i~V~D~t~-~e~--~~~~~~ 101 (272)
T 3b1v_A 35 GVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS--P--E---AKVARDYLLSQRADSI-LNVVDATN-LER--NLYLTT 101 (272)
T ss_dssp CCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS--H--H---HHHHHHHHHTTCCSEE-EEEEEGGG-HHH--HHHHHH
T ss_pred CCcEEEEEEEEec--CCeEEEEECCCcCccCCCC--h--H---HHHHHHHHhcCCCCEE-EEEecCCc-hHh--HHHHHH
Confidence 3344444555554 4689999999987653221 1 1 345566665 46644 55555553 221 223333
Q ss_pred hcCCCCCeEEEEeccchhh
Q psy8958 133 QMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 133 ~~DP~G~RTIGVlTK~D~~ 151 (294)
++-..|...|.|++|+|+.
T Consensus 102 ~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 102 QLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp HHHHTCSCEEEEEECHHHH
T ss_pred HHHhcCCCEEEEEEChhhC
Confidence 3322477899999999975
No 90
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.25 E-value=0.089 Score=42.59 Aligned_cols=63 Identities=13% Similarity=0.100 Sum_probs=38.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHH---HHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNV---TDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~a---l~lar~~DP~G~RTIGVlTK 147 (294)
..++|+|+||.... ..+...|+.....+|+++ +++....-... +....+.. +...|.|+||
T Consensus 93 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK 156 (208)
T 3clv_A 93 IKFDIWDTAGQERY-------------ASIVPLYYRGATCAIVVF-DISNSNTLDRAKTWVNQLKISS--NYIIILVANK 156 (208)
T ss_dssp EEEEEEECTTGGGC-------------TTTHHHHHTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEEC
T ss_pred eEEEEEECCCcHHH-------------HHHHHHHhcCCCEEEEEE-ECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEEC
Confidence 56899999994321 235677888888665554 44432221222 22233322 2789999999
Q ss_pred ch
Q psy8958 148 VS 149 (294)
Q Consensus 148 ~D 149 (294)
+|
T Consensus 157 ~D 158 (208)
T 3clv_A 157 ID 158 (208)
T ss_dssp TT
T ss_pred CC
Confidence 98
No 91
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.98 E-value=0.25 Score=48.11 Aligned_cols=73 Identities=19% Similarity=0.355 Sum_probs=45.2
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
.-+++.|||+||....+. .......+..+... + +|..++| |++|.. .+++...|+.++....-|.-|+||.
T Consensus 178 ~~~DvvIIDTaGr~~~~~---d~~lm~el~~i~~~-~-~pd~vlL-VlDa~~---gq~a~~~a~~f~~~~~~~gVIlTKl 248 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGE---ETKLLEEMKEMYDV-L-KPDDVIL-VIDASI---GQKAYDLASRFHQASPIGSVIITKM 248 (433)
T ss_dssp TTCSEEEEEECCCSSSCC---TTHHHHHHHHHHHH-H-CCSEEEE-EEEGGG---GGGGHHHHHHHHHHCSSEEEEEECG
T ss_pred cCCCEEEEECCCCccccC---CHHHHHHHHHHHHh-h-CCcceEE-EEeCcc---chHHHHHHHHHhcccCCcEEEEecc
Confidence 357899999999754222 22344555554332 2 4555554 455543 3667777777775545577899999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|.
T Consensus 249 D~ 250 (433)
T 3kl4_A 249 DG 250 (433)
T ss_dssp GG
T ss_pred cc
Confidence 95
No 92
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.96 E-value=0.77 Score=43.26 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=47.0
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---hh--cHHHHhhhhcCCCCCeEEEEe
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---ER--SNVTDLVSQMDPQGKRTIFVL 145 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---an--s~al~lar~~DP~G~RTIGVl 145 (294)
..+.++|+||++.. .|.+..+.++.+.. ++.....+ |.|++++... .. ..+.++.+++...+...|-|.
T Consensus 226 ~~v~l~DT~G~i~~----lp~~lve~f~~tl~-~~~~aD~i-l~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~ 299 (364)
T 2qtf_A 226 RKIMLVDTVGFIRG----IPPQIVDAFFVTLS-EAKYSDAL-ILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL 299 (364)
T ss_dssp EEEEEEECCCBCSS----CCGGGHHHHHHHHH-GGGGSSEE-EEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE
T ss_pred EEEEEEeCCCchhc----CCHHHHHHHHHHHH-HHHhCCEE-EEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE
Confidence 46899999998753 24556666666655 55666644 4555554321 11 123455666665667899999
Q ss_pred ccchh
Q psy8958 146 TKVSQ 150 (294)
Q Consensus 146 TK~D~ 150 (294)
+|+|+
T Consensus 300 NK~Dl 304 (364)
T 2qtf_A 300 NKIDK 304 (364)
T ss_dssp ECGGG
T ss_pred ECCCC
Confidence 99995
No 93
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.90 E-value=0.095 Score=41.36 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=40.8
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK 147 (294)
...++|+|+||.... +.+...|++..+.+|+++-..+.+ +.. ...+....... .+...+-|+||
T Consensus 53 ~~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK 118 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEF-------------DAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNK 118 (168)
T ss_dssp EEEEEEECCTTGGGT-------------TCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEEC
T ss_pred EEEEEEEcCCCcHhH-------------HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEC
Confidence 357999999994321 245677888888777666544322 111 11222222222 34679999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 119 ~Dl~ 122 (168)
T 1z2a_A 119 IDLL 122 (168)
T ss_dssp GGGG
T ss_pred cccC
Confidence 9963
No 94
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.83 E-value=0.3 Score=39.97 Aligned_cols=67 Identities=9% Similarity=0.141 Sum_probs=43.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||.... +.+...|+++.+.+|+++-..+.+ +.+. ..+...++..+ +...|.|+||
T Consensus 66 ~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 131 (194)
T 2atx_A 66 YLLGLYDTAGQEDY-------------DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-NVPFLLIGTQ 131 (194)
T ss_dssp EEEEEECCCCSSSS-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEEECCCCcch-------------hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 57899999996432 246678899888777665443322 2222 23455555544 5779999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 132 ~Dl~ 135 (194)
T 2atx_A 132 IDLR 135 (194)
T ss_dssp TTST
T ss_pred hhhc
Confidence 9963
No 95
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.76 E-value=0.31 Score=43.16 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=39.6
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhc--CCCCceEEEeccCCCcchhcHHHHhhhhcCCCC-CeEEEEeccc
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHM--SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQG-KRTIFVLTKV 148 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi--~~p~sIILaV~~a~~D~ans~al~lar~~DP~G-~RTIGVlTK~ 148 (294)
.+.|+|+||+....... .. ..+...|+ .++..+|++ ++++.--.+ +.+..++-..+ ...|.|+||.
T Consensus 51 ~~~l~DtpG~~~~~~~~----~~---~~~~~~~~~~~~~d~vi~v-~D~~~~~~~---~~~~~~~~~~~~~p~ilv~NK~ 119 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHS----ID---ELIARNFILDGNADVIVDI-VDSTCLMRN---LFLTLELFEMEVKNIILVLNKF 119 (271)
T ss_dssp EEEEEECCCCSCCCSSC----HH---HHHHHHHHHTTCCSEEEEE-EEGGGHHHH---HHHHHHHHHTTCCSEEEEEECH
T ss_pred eEEEEeCCCccccccCC----HH---HHHHHHhhhccCCcEEEEE-ecCCcchhh---HHHHHHHHhcCCCCEEEEEECh
Confidence 49999999987644321 11 13455666 566655544 454432222 22222222234 7789999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 120 Dl~ 122 (271)
T 3k53_A 120 DLL 122 (271)
T ss_dssp HHH
T ss_pred hcC
Confidence 965
No 96
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.70 E-value=0.3 Score=47.82 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=47.9
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
-+++.|||+||.... .......++.+ ...+ .|.. +|.|++|.. .+++...|+.+++...=+.-|+||+|
T Consensus 182 ~~DvVIIDTaGrl~~-----d~~lm~el~~i-~~~~-~pd~-vlLVvDA~~---gq~a~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKE-----DKALIEEMKQI-SNVI-HPHE-VILVIDGTI---GQQAYNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp TCSEEEEECCCCSSC-----CHHHHHHHHHH-HHHH-CCSE-EEEEEEGGG---GGGHHHHHHHHHHSCTTEEEEEECCS
T ss_pred CCCEEEEECCCcccc-----hHHHHHHHHHH-HHhh-cCce-EEEEEeCCC---chhHHHHHHHHHhhCCCeEEEEECCC
Confidence 378999999997542 23444444444 2233 3554 566666664 47788888988877777778999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
..
T Consensus 251 ~~ 252 (443)
T 3dm5_A 251 GS 252 (443)
T ss_dssp SC
T ss_pred Cc
Confidence 53
No 97
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.62 E-value=0.12 Score=42.88 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=41.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||.... +.+...|+...+.+|+++ +++....-. ..+...+...+.+...|.|+||
T Consensus 57 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK 122 (206)
T 2bcg_Y 57 VKLQIWDTAGQERF-------------RTITSSYYRGSHGIIIVY-DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 122 (206)
T ss_dssp EEEEEECCTTTTTT-------------TCCCGGGGTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEeCCChHHH-------------HHHHHHhccCCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 47999999994332 234667888888666655 444221111 1234444554556788999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 123 ~Dl 125 (206)
T 2bcg_Y 123 CDL 125 (206)
T ss_dssp TTC
T ss_pred CCC
Confidence 996
No 98
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.57 E-value=0.34 Score=38.78 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=41.6
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT 146 (294)
...|.|+|+||.... +.+...|+++.+.+|+++-..+.+ +.+. ..+...+...+ +...|-|+|
T Consensus 55 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~n 120 (182)
T 3bwd_D 55 TVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-GVPIVLVGT 120 (182)
T ss_dssp ---CEEECCCC-CTT-------------TTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEE
T ss_pred EEEEEEEECCCChhh-------------hhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEe
Confidence 356889999995321 256678888888777665443321 1121 24455555555 577999999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|+|+.
T Consensus 121 K~Dl~ 125 (182)
T 3bwd_D 121 KLDLR 125 (182)
T ss_dssp CHHHH
T ss_pred chhhh
Confidence 99964
No 99
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.46 E-value=0.17 Score=41.75 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=42.3
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||..... .+...|+.+.+.+|+++-..+.+ +.+. ..+...+...+ +...|-|+||
T Consensus 68 ~~~~i~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK 133 (201)
T 2q3h_A 68 VRLQLCDTAGQDEFD-------------KLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-KAPIILVGTQ 133 (201)
T ss_dssp EEEEEEECCCSTTCS-------------SSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SSCEEEEEEC
T ss_pred EEEEEEECCCCHHHH-------------HHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 468899999974322 34567888888776665443321 1111 23344555544 5788999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 134 ~Dl~ 137 (201)
T 2q3h_A 134 SDLR 137 (201)
T ss_dssp GGGG
T ss_pred Hhhh
Confidence 9964
No 100
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.45 E-value=0.28 Score=48.05 Aligned_cols=72 Identities=13% Similarity=0.198 Sum_probs=34.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHH-HHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCCCCCeEEEEec
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLI-RQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i-~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP~G~RTIGVlT 146 (294)
..++|+|+||+.... +..+.+ -.....|+...+.+|++ ++++...... ....+.+.+. +...|.|+|
T Consensus 281 ~~l~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD~vl~V-vD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~N 351 (476)
T 3gee_A 281 TMFRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILYL-LDLGTERLDDELTEIRELKAAHP--AAKFLTVAN 351 (476)
T ss_dssp EEEEEEC--------------------------CCCSSCSEEEEE-EETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEE
T ss_pred eEEEEEECCCCCcch------hHHHHHHHHHHHhhcccCCEEEEE-EECCCCcchhhhHHHHHHHHhcC--CCCEEEEEE
Confidence 469999999986421 111111 13356688888866555 4444322211 3344555554 578999999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|.|+.
T Consensus 352 K~Dl~ 356 (476)
T 3gee_A 352 KLDRA 356 (476)
T ss_dssp CTTSC
T ss_pred CcCCC
Confidence 99964
No 101
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.44 E-value=0.23 Score=41.50 Aligned_cols=73 Identities=15% Similarity=0.248 Sum_probs=43.0
Q ss_pred EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHH-HhhhhcCCCC
Q psy8958 62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVT-DLVSQMDPQG 138 (294)
Q Consensus 62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al-~lar~~DP~G 138 (294)
.+.+.+ ..|.++|+||... .+.+...|++..+.+|+++-..+.+ +.+. ..+ .+.+.....+
T Consensus 63 ~~~~~~---~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~ 126 (198)
T 1f6b_A 63 ELTIAG---MTFTTFDLGGHIQ-------------ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN 126 (198)
T ss_dssp EEEETT---EEEEEEEECC-----------------CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred EEEECC---EEEEEEECCCcHh-------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence 444444 6799999999432 2346778999888777665443322 2211 112 2222224456
Q ss_pred CeEEEEeccchh
Q psy8958 139 KRTIFVLTKVSQ 150 (294)
Q Consensus 139 ~RTIGVlTK~D~ 150 (294)
...|.|.||+|+
T Consensus 127 ~piilv~NK~Dl 138 (198)
T 1f6b_A 127 VPILILGNKIDR 138 (198)
T ss_dssp SCEEEEEECTTS
T ss_pred CcEEEEEECCCc
Confidence 788999999995
No 102
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.42 E-value=0.21 Score=39.88 Aligned_cols=76 Identities=12% Similarity=0.146 Sum_probs=42.2
Q ss_pred EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcC---CC
Q psy8958 63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMD---PQ 137 (294)
Q Consensus 63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~D---P~ 137 (294)
+.+.+.....+.|+|+||.... ..+...|+++.+.+|+++-..+.+ +.+ ...+...+.+. +.
T Consensus 48 ~~~~~~~~~~~~~~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 114 (178)
T 2hxs_A 48 ITLPGNLNVTLQIWDIGGQTIG-------------GKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET 114 (178)
T ss_dssp EEETTTEEEEEEEEECTTCCTT-------------CTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred EEeCCCCEEEEEEEECCCCccc-------------cchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 3333322467999999994321 235667888888777755443321 111 12223333322 12
Q ss_pred CCeEEEEeccchhh
Q psy8958 138 GKRTIFVLTKVSQQ 151 (294)
Q Consensus 138 G~RTIGVlTK~D~~ 151 (294)
....|-|.||.|+.
T Consensus 115 ~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 115 QPLVALVGNKIDLE 128 (178)
T ss_dssp CCEEEEEEECGGGG
T ss_pred CCeEEEEEEccccc
Confidence 33468899999963
No 103
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=90.38 E-value=0.52 Score=44.53 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=40.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC---cchhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV---DAERSNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~---D~ans~al~lar~~DP~G~RTIGVlTK 147 (294)
..++|+|+||.. +.+ ..+..++...+.+||+| +|+. ...+.+.+.+++.+.. ...|.|+||
T Consensus 83 ~~i~iiDtPGh~------------~f~-~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~~~~--~~iivviNK 146 (410)
T 1kk1_A 83 RRVSFIDAPGHE------------ALM-TTMLAGASLMDGAILVI-AANEPCPRPQTREHLMALQIIGQ--KNIIIAQNK 146 (410)
T ss_dssp EEEEEEECSSHH------------HHH-HHHHHCGGGCSEEEEEE-ETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEEC
T ss_pred cEEEEEECCChH------------HHH-HHHHhhhhhCCEEEEEE-ECCCCCCChhHHHHHHHHHHcCC--CcEEEEEEC
Confidence 469999999931 222 34455666777665555 5553 2345556666666532 357899999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 147 ~Dl~ 150 (410)
T 1kk1_A 147 IELV 150 (410)
T ss_dssp GGGS
T ss_pred ccCC
Confidence 9964
No 104
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=90.37 E-value=0.48 Score=47.81 Aligned_cols=81 Identities=17% Similarity=0.250 Sum_probs=48.8
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--------cchhcH
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--------DAERSN 126 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--------D~ans~ 126 (294)
+++-+.....+..++ ..++|+|+||... ...++..|++..+.+||+|-..+- ...+..
T Consensus 230 GiTid~~~~~~~~~~-~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e 295 (611)
T 3izq_1 230 GVTVSICTSHFSTHR-ANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE 295 (611)
T ss_dssp TTCCSCSCCEEECSS-CEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH
T ss_pred CeeEeeeeEEEecCC-ceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH
Confidence 344444455555544 4799999999632 234556788888866665544331 123344
Q ss_pred HHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 127 VTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 127 al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
.+.+++... -...|.|+||+|+.
T Consensus 296 ~l~~~~~lg--i~~iIVVvNKiDl~ 318 (611)
T 3izq_1 296 HMLLASSLG--IHNLIIAMNKMDNV 318 (611)
T ss_dssp HHHHHHTTT--CCEEEEEEECTTTT
T ss_pred HHHHHHHcC--CCeEEEEEeccccc
Confidence 445555442 13488999999964
No 105
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.37 E-value=0.19 Score=42.11 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=42.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||.-. ...+...|++..+.+|+++-..+.+ +.+. ..+...+... .+.-.|.|+||
T Consensus 78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK 143 (204)
T 4gzl_A 78 VNLGLWDTAGLED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTK 143 (204)
T ss_dssp EEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEEC
T ss_pred EEEEEEECCCchh-------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEec
Confidence 4577999999632 2356778899888777766443321 1111 2344455544 35778999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 144 ~Dl~ 147 (204)
T 4gzl_A 144 LDLR 147 (204)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 9964
No 106
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.13 E-value=0.16 Score=41.68 Aligned_cols=67 Identities=6% Similarity=0.117 Sum_probs=41.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||... ...+...|+...+.+|+++-..+.+ +.+ ...+ .+.+.....+...|.|+||
T Consensus 62 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 128 (206)
T 2bov_A 62 VQIDILDTAGQED-------------YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128 (206)
T ss_dssp EEEEEEECCCTTC-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEEC
T ss_pred EEEEEEcCCChhh-------------hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEec
Confidence 4799999999432 1346677888888777665443321 111 1122 2333344456789999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 129 ~Dl 131 (206)
T 2bov_A 129 SDL 131 (206)
T ss_dssp TTC
T ss_pred cCc
Confidence 995
No 107
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.02 E-value=0.49 Score=46.10 Aligned_cols=90 Identities=8% Similarity=0.084 Sum_probs=55.6
Q ss_pred ceEEEEeCCCC-CCceEEeCCCCcccCCCC-CC----hhHHHHHHHHhhhhcCCC-----------CceEEEeccCCCcc
Q psy8958 60 VISMSVKGPGL-QRMVLVDLPGIISTSTQD-MA----SDTRDLIRQMTQTHMSNP-----------NAIILCIQDGSVDA 122 (294)
Q Consensus 60 ~I~leI~gP~~-p~LTLVDLPGi~~~~~~~-q~----~~~~~~i~~Lv~~Yi~~p-----------~sIILaV~~a~~D~ 122 (294)
.+.+....+.+ ++||++|.||+....... .- ..+..++..++..|+... +++++.|+|++..+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 35555555554 589999999987543211 01 124556666667664322 23688889988766
Q ss_pred hhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 123 ERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 123 ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
...+ ..+++.+. .+...|-|++|.|..
T Consensus 163 ~~~D-ieilk~L~-~~~~vI~Vi~KtD~L 189 (427)
T 2qag_B 163 KSLD-LVTMKKLD-SKVNIIPIIAKADAI 189 (427)
T ss_dssp CHHH-HHHHHHTC-SCSEEEEEESCGGGS
T ss_pred CHHH-HHHHHHHh-hCCCEEEEEcchhcc
Confidence 6555 57788887 679999999999964
No 108
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=89.97 E-value=0.47 Score=47.10 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=47.6
Q ss_pred ccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHHHhhhhc
Q psy8958 56 VSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVTDLVSQM 134 (294)
Q Consensus 56 ~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al~lar~~ 134 (294)
+....+.+... -..++|+|+||..... ..+..|++...++|++|-+.+- ...+...++.++.
T Consensus 70 i~~~~~~~~~~---~~~i~liDTPG~~df~-------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~- 132 (528)
T 3tr5_A 70 VTTSVMQFPYK---DYLINLLDTPGHADFT-------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL- 132 (528)
T ss_dssp SSSSEEEEEET---TEEEEEECCCCSTTCC-------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT-
T ss_pred EEEeEEEEEeC---CEEEEEEECCCchhHH-------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-
Confidence 34444444443 2469999999964322 3467788888877665544432 3334444555554
Q ss_pred CCCCCeEEEEeccchh
Q psy8958 135 DPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 135 DP~G~RTIGVlTK~D~ 150 (294)
.+.-.|.|+||+|+
T Consensus 133 --~~iPiivviNK~Dl 146 (528)
T 3tr5_A 133 --RHTPIMTFINKMDR 146 (528)
T ss_dssp --TTCCEEEEEECTTS
T ss_pred --cCCCEEEEEeCCCC
Confidence 45779999999996
No 109
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.94 E-value=0.095 Score=43.99 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=42.5
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||..... .+...|+...+.+|+++-..+.+. .-...+...+..-+.+...|.|+||+
T Consensus 61 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (218)
T 4djt_A 61 IKFNVWDTAGQEKKA-------------VLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKI 127 (218)
T ss_dssp EEEEEEEECSGGGTS-------------CCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECT
T ss_pred EEEEEEecCCchhhc-------------hHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 569999999954322 345567778887766654433211 11123355555556668899999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 128 Dl 129 (218)
T 4djt_A 128 DI 129 (218)
T ss_dssp TC
T ss_pred CC
Confidence 95
No 110
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.90 E-value=0.64 Score=37.49 Aligned_cols=67 Identities=9% Similarity=0.169 Sum_probs=40.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-hhcHHH----Hhhhhc--CCCCCeEEE
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-ERSNVT----DLVSQM--DPQGKRTIF 143 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-ans~al----~lar~~--DP~G~RTIG 143 (294)
..|.|+|+||... .+.+...|+++.+.+|+++-...... .+...+ +...++ ...+.-.|-
T Consensus 74 ~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piil 140 (198)
T 3t1o_A 74 TRFHLYTVPGQVF-------------YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVI 140 (198)
T ss_dssp EEEEEEECCSCCS-------------CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEE
T ss_pred eEEEEEeCCChHH-------------HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEE
Confidence 3589999999542 12466678998887776554431100 012222 233333 345678999
Q ss_pred Eeccchh
Q psy8958 144 VLTKVSQ 150 (294)
Q Consensus 144 VlTK~D~ 150 (294)
|.||.|+
T Consensus 141 v~NK~Dl 147 (198)
T 3t1o_A 141 QVNKRDL 147 (198)
T ss_dssp EEECTTS
T ss_pred EEEchhc
Confidence 9999995
No 111
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.85 E-value=0.47 Score=38.05 Aligned_cols=69 Identities=20% Similarity=0.383 Sum_probs=40.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcch-hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAE-RSNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~a-ns~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.++|+||....... . .-+.+...|+. .+..+ +.|.++.. .. ....+...++ .+.-.|.|.+|
T Consensus 50 ~~l~i~Dt~G~~~~~~~--~-----~~~~~~~~~~~~~~~~~~-i~v~D~~~-~~~~~~~~~~~~~---~~~p~ilv~nK 117 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTAN--S-----IDEIIARDYIINEKPDLV-VNIVDATA-LERNLYLTLQLME---MGANLLLALNK 117 (165)
T ss_dssp EEEEEEECCCCSCSSSS--S-----HHHHHHHHHHHHHCCSEE-EEEEETTC-HHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred cEEEEEECCCcccCCCc--c-----hhHHHHHHHHhcCCCCEE-EEEecCCc-hhHhHHHHHHHHh---cCCCEEEEEEc
Confidence 46999999998764321 1 22355666765 56644 55666553 22 1122223333 35678999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 118 ~Dl~ 121 (165)
T 2wji_A 118 MDLA 121 (165)
T ss_dssp HHHH
T ss_pred hHhc
Confidence 9964
No 112
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=89.83 E-value=0.38 Score=45.50 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..++|+|+||.. .....+..|+...+.+||+|-..+- ...+.+.+.+++.... ...|.|+||.
T Consensus 75 ~~~~iiDtPGh~-------------~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~ 139 (403)
T 3sjy_A 75 RRISFIDAPGHE-------------VLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKV 139 (403)
T ss_dssp EEEEEEECCCCG-------------GGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECG
T ss_pred ceEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECc
Confidence 468999999931 1223455677778866666544432 2234455666666532 3579999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 140 Dl~ 142 (403)
T 3sjy_A 140 DVV 142 (403)
T ss_dssp GGS
T ss_pred ccc
Confidence 964
No 113
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.81 E-value=0.28 Score=38.58 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=39.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcC--CCCCeEEEEec
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMD--PQGKRTIFVLT 146 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~D--P~G~RTIGVlT 146 (294)
..+.|+|+||... ...+...|+...+.+|+++-..+.+ +.. ...+...+++. ..+...+.|+|
T Consensus 51 ~~~~~~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~n 117 (172)
T 2erx_A 51 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117 (172)
T ss_dssp EEEEEEECCSCSS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEE
T ss_pred EEEEEEECCCchh-------------hHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 4689999999532 1245667777778776666544322 111 12223333332 23567899999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|.|+.
T Consensus 118 K~Dl~ 122 (172)
T 2erx_A 118 KCDES 122 (172)
T ss_dssp CGGGG
T ss_pred ccccc
Confidence 99963
No 114
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.73 E-value=0.12 Score=49.43 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=43.2
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
.++|+|+||+.+.....+.-+-...++ ...|++..+.+ |.|++++.....++ .+++..+...|.-.|-|++|+|+.
T Consensus 224 ~~~l~DT~G~~~~~~~~~~~e~~~~~~--~~~~~~~ad~~-llv~D~~~~~s~~~-~~~~~~~~~~~~~iiiv~NK~Dl~ 299 (436)
T 2hjg_A 224 EFVIVDTAGMRKKGKVYETTEKYSVLR--ALKAIDRSEVV-AVVLDGEEGIIEQD-KRIAGYAHEAGKAVVIVVNKWDAV 299 (436)
T ss_dssp EEEETTHHHHTCBTTBCCCCSHHHHHH--HHHHHHHCSEE-EEEEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGGS
T ss_pred EEEEEECCCcCcCccccchHHHHHHHH--HHHHHHhCCEE-EEEEcCCcCCcHHH-HHHHHHHHHcCCcEEEEEECccCC
Confidence 489999999876543221111111111 22466777754 45556654443333 234444334578899999999963
No 115
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=89.71 E-value=1.3 Score=41.66 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=45.2
Q ss_pred EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcHHHHhhhhcCCCCCe
Q psy8958 62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSNVTDLVSQMDPQGKR 140 (294)
Q Consensus 62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~al~lar~~DP~G~R 140 (294)
.+.+... -..++|+|+||... ...++..|++..+.+||+|-..+-. ..+.+.+.+++.. |..
T Consensus 58 ~~~~~~~-~~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~vp 120 (397)
T 1d2e_A 58 HVEYSTA-ARHYAHTDCPGHAD-------------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI---GVE 120 (397)
T ss_dssp EEEEECS-SCEEEEEECSSHHH-------------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCC
T ss_pred eEEeccC-CeEEEEEECCChHH-------------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc---CCC
Confidence 3444443 35799999999532 2335567788888776666443322 2234455666654 455
Q ss_pred -EEEEeccchhh
Q psy8958 141 -TIFVLTKVSQQ 151 (294)
Q Consensus 141 -TIGVlTK~D~~ 151 (294)
-|.|+||+|+.
T Consensus 121 ~iivviNK~Dl~ 132 (397)
T 1d2e_A 121 HVVVYVNKADAV 132 (397)
T ss_dssp CEEEEEECGGGC
T ss_pred eEEEEEECcccC
Confidence 47999999964
No 116
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.70 E-value=0.24 Score=41.44 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=42.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||.... ..+...|+++.+.+|+++-..+.+ +.+ ...+...+..-+ +...|.|+||
T Consensus 73 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 138 (207)
T 2fv8_A 73 VELALWDTAGQEDY-------------DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-NVPIILVANK 138 (207)
T ss_dssp EEEEEEECTTCTTC-------------TTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEEECCCcHHH-------------HHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEc
Confidence 46899999995432 245667888888777765443321 222 223445555444 4778999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 139 ~Dl~ 142 (207)
T 2fv8_A 139 KDLR 142 (207)
T ss_dssp GGGG
T ss_pred hhhh
Confidence 9963
No 117
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.67 E-value=0.15 Score=41.39 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH---HHHhhhhc-CCCCCeEEEEe
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN---VTDLVSQM-DPQGKRTIFVL 145 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~---al~lar~~-DP~G~RTIGVl 145 (294)
...+.|+|+||.... +.+...|+++.+.+|+++ +++....-.. .+.....+ ...+...|-|+
T Consensus 63 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~ii~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~ 128 (195)
T 1x3s_A 63 KAKLAIWDTAGQERF-------------RTLTPSYYRGAQGVILVY-DVTRRDTFVKLDNWLNELETYCTRNDIVNMLVG 128 (195)
T ss_dssp EEEEEEEEECSSGGG-------------CCSHHHHHTTCCEEEEEE-ETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEE
T ss_pred EEEEEEEeCCCchhh-------------hhhhHHHhccCCEEEEEE-ECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEE
Confidence 357999999995432 234567888888666655 4443211111 22233332 23456789999
Q ss_pred ccchh
Q psy8958 146 TKVSQ 150 (294)
Q Consensus 146 TK~D~ 150 (294)
||+|+
T Consensus 129 nK~Dl 133 (195)
T 1x3s_A 129 NKIDK 133 (195)
T ss_dssp ECTTS
T ss_pred ECCcC
Confidence 99995
No 118
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.51 E-value=0.78 Score=37.83 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=51.5
Q ss_pred ccccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHh---hhhcCCCCceEEEeccCCCcch--hcHHH
Q psy8958 54 KTVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMT---QTHMSNPNAIILCIQDGSVDAE--RSNVT 128 (294)
Q Consensus 54 ~~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv---~~Yi~~p~sIILaV~~a~~D~a--ns~al 128 (294)
..++...+...+.+.....|.|+|+||..... .+. ..|++..+.+|+++- ++..+. -....
T Consensus 52 ~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------~~~~~~~~~~~~~~~~i~v~d-~~~~~~~~~~~~~ 117 (196)
T 3llu_A 52 LESTNKIYKDDISNSSFVNFQIWDFPGQMDFF-------------DPTFDYEMIFRGTGALIYVID-AQDDYMEALTRLH 117 (196)
T ss_dssp CCCCCSCEEEEECCTTSCCEEEEECCSSCCTT-------------CTTCCHHHHHHTCSEEEEEEE-TTSCCHHHHHHHH
T ss_pred eccccceeeeeccCCCeeEEEEEECCCCHHHH-------------hhhhhcccccccCCEEEEEEE-CCCchHHHHHHHH
Confidence 44556677777776677899999999954321 223 577788887766554 443211 12222
Q ss_pred Hhhhhc--CCCCCeEEEEeccchhh
Q psy8958 129 DLVSQM--DPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 129 ~lar~~--DP~G~RTIGVlTK~D~~ 151 (294)
+..+++ ...+.-.|-|.||.|+.
T Consensus 118 ~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 118 ITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp HHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred HHHHHHHhcCCCCcEEEEEeccccC
Confidence 333332 23367899999999963
No 119
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.39 E-value=0.18 Score=42.75 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=40.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||.... +.+...|++..+.+|+++ +++....-. ..+..++...+.+.-.|-|+||
T Consensus 62 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~vilV~-D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK 127 (223)
T 3cpj_B 62 IKAQIWDTAGQERY-------------RAITSAYYRGAVGALIVY-DISKSSSYENCNHWLSELRENADDNVAVGLIGNK 127 (223)
T ss_dssp EEEEEECCTTTTTT-------------TCCCGGGTTTCCEEEEEE-C-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_pred EEEEEEECCCccch-------------hhhHHHHhccCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 47999999994322 245678888888766654 444321111 2234455554556778999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 128 ~Dl~ 131 (223)
T 3cpj_B 128 SDLA 131 (223)
T ss_dssp GGGG
T ss_pred cccc
Confidence 9963
No 120
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=89.37 E-value=0.56 Score=45.34 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=44.1
Q ss_pred EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---------hhcHHHHhhhh
Q psy8958 63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---------ERSNVTDLVSQ 133 (294)
Q Consensus 63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---------ans~al~lar~ 133 (294)
..+..++. .++|+|+||.. + ....+..|+...+.+||+| +|+... .+.+.+.+++.
T Consensus 78 ~~~~~~~~-~~~iiDtPGh~------------~-f~~~~~~~~~~aD~~ilVv-da~~g~~~~sf~~~~qt~~~~~~~~~ 142 (458)
T 1f60_A 78 WKFETPKY-QVTVIDAPGHR------------D-FIKNMITGTSQADCAILII-AGGVGEFEAGISKDGQTREHALLAFT 142 (458)
T ss_dssp EEEECSSE-EEEEEECCCCT------------T-HHHHHHHSSSCCSEEEEEE-ECSHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred EEEecCCc-eEEEEECCCcH------------H-HHHHHHhhhhhCCEEEEEE-eCCcCccccccCcchhHHHHHHHHHH
Confidence 34555543 69999999942 1 2234566788888666655 444321 23344556665
Q ss_pred cCCCCC-eEEEEeccchhh
Q psy8958 134 MDPQGK-RTIFVLTKVSQQ 151 (294)
Q Consensus 134 ~DP~G~-RTIGVlTK~D~~ 151 (294)
. |. ..|.|+||+|+.
T Consensus 143 ~---~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 143 L---GVRQLIVAVNKMDSV 158 (458)
T ss_dssp T---TCCEEEEEEECGGGG
T ss_pred c---CCCeEEEEEEccccc
Confidence 4 44 478899999974
No 121
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.35 E-value=0.12 Score=43.10 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=42.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAER--SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~an--s~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||... .+.+...|+++.+.+|+++-..+. .+.+ ...++.+++..+ +...|-|+||
T Consensus 73 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 138 (201)
T 2gco_A 73 VELALWDTAGQED-------------YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-NVPIILVGNK 138 (201)
T ss_dssp EEEEEECCCCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-TCCEEEEEEC
T ss_pred EEEEEEECCCchh-------------HHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 4789999999432 134566788888877766543332 1222 233455555544 5778999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 139 ~Dl~ 142 (201)
T 2gco_A 139 KDLR 142 (201)
T ss_dssp GGGT
T ss_pred HHhh
Confidence 9963
No 122
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.27 E-value=0.47 Score=39.21 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=41.6
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcH--HHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSN--VTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~--al~lar~~DP~G~RTIGVlTK 147 (294)
..+.++|+||.... +.+...|+++.+.+|+++-..+.+ +.+.. ...+.+.....+...|-|.||
T Consensus 67 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK 133 (190)
T 1m2o_B 67 IKFTTFDLGGHIQA-------------RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNK 133 (190)
T ss_dssp EEEEEEECCCSGGG-------------TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEEC
T ss_pred EEEEEEECCCCHHH-------------HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEEC
Confidence 67999999996532 235678888888777665443322 11111 112222233456778999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 134 ~Dl 136 (190)
T 1m2o_B 134 IDA 136 (190)
T ss_dssp TTS
T ss_pred CCC
Confidence 995
No 123
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.20 E-value=0.3 Score=40.47 Aligned_cols=69 Identities=14% Similarity=0.082 Sum_probs=39.7
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHH---HH-hhhhcCCCCCeEEEE
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNV---TD-LVSQMDPQGKRTIFV 144 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~a---l~-lar~~DP~G~RTIGV 144 (294)
....+.|+|+||..... .+...|+...+.+|+++-..+.+ .-..+ +. +.+.....+...|-|
T Consensus 70 ~~~~~~l~Dt~G~~~~~-------------~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv 135 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYS-------------ILPYSFIIGVHGYVLVYSVTSLH-SFQVIESLYQKLHEGHGKTRVPVVLV 135 (201)
T ss_dssp -CEEEEEEEECCCCTTC-------------CCCGGGTTTCCEEEEEEETTCHH-HHHHHHHHHHHHHC-----CCCEEEE
T ss_pred EEEEEEEEECCCccchH-------------HHHHHHHhcCCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 34568999999944322 34678888888777666544321 11111 12 222333446779999
Q ss_pred eccchhh
Q psy8958 145 LTKVSQQ 151 (294)
Q Consensus 145 lTK~D~~ 151 (294)
+||+|+.
T Consensus 136 ~nK~Dl~ 142 (201)
T 3oes_A 136 GNKADLS 142 (201)
T ss_dssp EECTTCG
T ss_pred EECccCc
Confidence 9999953
No 124
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.12 E-value=0.32 Score=38.20 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=39.7
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK 147 (294)
-..+.|+|+||... .+.+...|+++.+.+|+++-..+.+ +.. ...+.........+.-.|-|.||
T Consensus 54 ~~~~~~~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK 120 (170)
T 1r2q_A 54 TVKFEIWDTAGQER-------------YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120 (170)
T ss_dssp EEEEEEEEECCSGG-------------GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEEeCCCcHH-------------hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 34689999999432 2345677888888776665443321 111 11223333333334556777799
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 121 ~Dl 123 (170)
T 1r2q_A 121 ADL 123 (170)
T ss_dssp GGG
T ss_pred ccC
Confidence 996
No 125
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=88.85 E-value=1 Score=42.45 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=48.0
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhh
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVS 132 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar 132 (294)
+++-+.-...+..++. .++|+|+||..+ .+.+|+ .+++..+.+||+|- +..+. +.+.+.+++
T Consensus 45 giTi~~~~~~~~~~~~-~i~iiDtPGh~~------------f~~~~~-~~~~~aD~ailVvd--~~g~~~qt~e~~~~~~ 108 (370)
T 2elf_A 45 GTSSDITMYNNDKEGR-NMVFVDAHSYPK------------TLKSLI-TALNISDIAVLCIP--PQGLDAHTGECIIALD 108 (370)
T ss_dssp EEESSSEEEEECSSSS-EEEEEECTTTTT------------CHHHHH-HHHHTCSEEEEEEC--TTCCCHHHHHHHHHHH
T ss_pred CEEEEeeEEEEecCCe-EEEEEECCChHH------------HHHHHH-HHHHHCCEEEEEEc--CCCCcHHHHHHHHHHH
Confidence 4444555555555554 599999999642 123333 45577787777665 43333 445566666
Q ss_pred hcCCCCCeE-EEEec-cchh
Q psy8958 133 QMDPQGKRT-IFVLT-KVSQ 150 (294)
Q Consensus 133 ~~DP~G~RT-IGVlT-K~D~ 150 (294)
.. |... |.|++ |+|+
T Consensus 109 ~~---~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 109 LL---GFKHGIIALTRSDST 125 (370)
T ss_dssp HT---TCCEEEEEECCGGGS
T ss_pred Hc---CCCeEEEEEEeccCC
Confidence 65 4455 99999 9995
No 126
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.76 E-value=0.45 Score=37.48 Aligned_cols=68 Identities=15% Similarity=0.085 Sum_probs=31.1
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlT 146 (294)
...|.++|+||... .+.+...|++..+.+|+++...+.+ +.+ ...+ .+.+.....+.-.|.|.|
T Consensus 48 ~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 114 (166)
T 3q72_A 48 EASLMVYDIWEQDG-------------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 114 (166)
T ss_dssp EEEEEEEECC----------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEE
T ss_pred EEEEEEEECCCCcc-------------chhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence 45688999999432 2456778888888887766554322 111 1112 233333345677899999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 115 K~Dl 118 (166)
T 3q72_A 115 KSDL 118 (166)
T ss_dssp CTTC
T ss_pred cccc
Confidence 9995
No 127
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.63 E-value=0.57 Score=38.28 Aligned_cols=68 Identities=16% Similarity=0.211 Sum_probs=42.4
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlT 146 (294)
-..+.++|+||... .+.+...|++..+.+|+++-..+.+ +... ....+.+.....+.-.|.|.|
T Consensus 59 ~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~N 125 (181)
T 1fzq_A 59 GFKLNVWDIGGQRK-------------IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125 (181)
T ss_dssp TEEEEEEECSSCGG-------------GHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEE
T ss_pred CEEEEEEECCCCHH-------------HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEE
Confidence 35799999999432 2456778999988777765443321 2211 112233333445677899999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|+|+
T Consensus 126 K~Dl 129 (181)
T 1fzq_A 126 KQDL 129 (181)
T ss_dssp CTTS
T ss_pred CcCc
Confidence 9995
No 128
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=88.59 E-value=0.44 Score=48.05 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=42.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
+.++|+|+||..... .++..|++..+.+||+ ++|+.. ..+-+++++++.. +.-.|.|+||+
T Consensus 70 ~~i~liDTPGhe~F~-------------~~~~r~~~~aD~aILV-vDa~~Gv~~qT~e~l~~l~~~---~vPiIVViNKi 132 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFT-------------TLRKRGGALADLAILI-VDINEGFKPQTQEALNILRMY---RTPFVVAANKI 132 (594)
T ss_dssp CEEEEECCCTTSCCT-------------TSBCSSSBSCSEEEEE-EETTTCCCHHHHHHHHHHHHT---TCCEEEEEECG
T ss_pred CCEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEE-EECCCCccHhHHHHHHHHHHc---CCeEEEEeccc
Confidence 459999999964432 2445677777755555 455532 3455666777664 45689999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|+
T Consensus 133 Dl 134 (594)
T 1g7s_A 133 DR 134 (594)
T ss_dssp GG
T ss_pred cc
Confidence 96
No 129
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.45 E-value=0.15 Score=41.30 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=40.6
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHH-HhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVT-DLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al-~lar~~DP~G~RTIGVlT 146 (294)
...|.|+|+||.... ..+...|+++.+.+|+++-..+.+ +.+ ...+ .+.+.....+...|.|+|
T Consensus 65 ~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~n 131 (183)
T 3kkq_A 65 WAILDVLDTAGQEEF-------------SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVAN 131 (183)
T ss_dssp EEEEEEEECCSCGGG-------------CSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEE
T ss_pred EEEEEEEECCCchhh-------------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEE
Confidence 345888999994321 234567777788777665444321 111 1112 233334556678999999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 132 K~Dl 135 (183)
T 3kkq_A 132 KVDL 135 (183)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9995
No 130
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=88.35 E-value=1 Score=42.51 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=40.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC---cchhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV---DAERSNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~---D~ans~al~lar~~DP~G~RTIGVlTK 147 (294)
..++|+|+||. +.....+..++...+.+||+| +|+. ...+.+.+.+++.... ...|.|+||
T Consensus 81 ~~i~iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVv-da~~g~~~~qt~e~l~~~~~l~~--~~iivv~NK 144 (408)
T 1s0u_A 81 RRVSFVDSPGH-------------ETLMATMLSGASLMDGAILVI-AANEPCPQPQTKEHLMALEILGI--DKIIIVQNK 144 (408)
T ss_dssp EEEEEEECSSH-------------HHHHHHHHTTCSCCSEEEEEE-ETTSCSSCHHHHHHHHHHHHTTC--CCEEEEEEC
T ss_pred cEEEEEECCCH-------------HHHHHHHHHhHhhCCEEEEEE-ECCCCCCCchhHHHHHHHHHcCC--CeEEEEEEc
Confidence 46999999993 112234456677777665554 5553 2334455556655431 347899999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 145 ~Dl~ 148 (408)
T 1s0u_A 145 IDLV 148 (408)
T ss_dssp TTSS
T ss_pred cCCC
Confidence 9963
No 131
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.31 E-value=0.32 Score=39.89 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT 146 (294)
...+.|+|+||.-. ...+...|+.+.+.+|+++-..+.+ +.+ ...+...+...+ +...|-|.|
T Consensus 70 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~n 135 (194)
T 3reg_A 70 EFILHLWDTAGQEE-------------YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-TAKTVLVGL 135 (194)
T ss_dssp EEEEEEEEECCSGG-------------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSEEEEEEE
T ss_pred EEEEEEEECCCcHH-------------HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEE
Confidence 34589999999332 2356778999888777665443321 111 223344454433 477899999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|+|+
T Consensus 136 K~Dl 139 (194)
T 3reg_A 136 KVDL 139 (194)
T ss_dssp CGGG
T ss_pred Chhh
Confidence 9996
No 132
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.22 E-value=0.41 Score=40.36 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||.. ..+.+...|+...+.+|+++-..+.+ +.+. ..+...+...+ +...|-|+||
T Consensus 82 ~~l~l~Dt~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 147 (214)
T 2j1l_A 82 VHLHIWDTAGQD-------------DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-KVPIIVVGCK 147 (214)
T ss_dssp EEEEEEEC----------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-SCCEEEEEEC
T ss_pred EEEEEEECCCch-------------hhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 368999999932 22456677888888776655433321 1111 23444555544 4678999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 148 ~Dl~ 151 (214)
T 2j1l_A 148 TDLR 151 (214)
T ss_dssp GGGG
T ss_pred hhhh
Confidence 9963
No 133
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=88.16 E-value=0.51 Score=37.88 Aligned_cols=67 Identities=22% Similarity=0.114 Sum_probs=39.3
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||..... .+...|++..+.+|+++-..+.+ +.. .-...+.+.....+.-.|.|+||
T Consensus 54 ~~~~l~Dt~G~~~~~-------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 120 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYS-------------IFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNK 120 (181)
T ss_dssp EEEEEEECCCCCTTC-------------CCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEEC
T ss_pred EEEEEEeCCCchhhh-------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 468999999965432 35567888888777765444321 111 11113344445556779999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 121 ~Dl 123 (181)
T 3t5g_A 121 KDL 123 (181)
T ss_dssp TTC
T ss_pred ccc
Confidence 995
No 134
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.01 E-value=0.81 Score=37.16 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=38.2
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc-HH---H-Hhhhhc---CCCCCeE
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS-NV---T-DLVSQM---DPQGKRT 141 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans-~a---l-~lar~~---DP~G~RT 141 (294)
...+.|+|+||...... . .......++...+++|++ ++++.+.... .+ + .+.... .+.+.-.
T Consensus 90 ~~~~~l~Dt~G~~~~~~-----~----~~~~~~~~~~~~~~~i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 159 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRY-----K----LSDYLKTRAKFVKGLIFM-VDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159 (193)
T ss_dssp CTTCSEEEETTCCBSSC-----C----HHHHHHHHGGGEEEEEEE-EETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCE
T ss_pred CCeEEEEECCCCchHHH-----H----HHHHHHhhcccCCEEEEE-EECCCCchhHHHHHHHHHHHHhhhhhccccCCCE
Confidence 46799999999865331 1 122233334445655554 4544222211 11 1 122211 3346779
Q ss_pred EEEeccchhh
Q psy8958 142 IFVLTKVSQQ 151 (294)
Q Consensus 142 IGVlTK~D~~ 151 (294)
|.|+||+|+.
T Consensus 160 ilv~nK~Dl~ 169 (193)
T 2ged_A 160 LIACNKSELF 169 (193)
T ss_dssp EEEEECTTST
T ss_pred EEEEEchHhc
Confidence 9999999953
No 135
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=87.98 E-value=0.14 Score=42.26 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=38.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH---HHH----hhhhcCCCCCeEEE
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN---VTD----LVSQMDPQGKRTIF 143 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~---al~----lar~~DP~G~RTIG 143 (294)
..++|+|+||.... +.+...|++..+.+|+++ +++....-.. .+. .+...++.+...|.
T Consensus 57 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piil 122 (207)
T 1vg8_A 57 VTMQIWDTAGQERF-------------QSLGVAFYRGADCCVLVF-DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122 (207)
T ss_dssp EEEEEEEECSSGGG-------------SCSCCGGGTTCSEEEEEE-ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEE
T ss_pred EEEEEEeCCCcHHH-------------HHhHHHHHhCCcEEEEEE-ECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 57999999995332 234567888888766655 4442211111 111 12122334677899
Q ss_pred Eeccchh
Q psy8958 144 VLTKVSQ 150 (294)
Q Consensus 144 VlTK~D~ 150 (294)
|+||.|+
T Consensus 123 v~nK~Dl 129 (207)
T 1vg8_A 123 LGNKIDL 129 (207)
T ss_dssp EEECTTS
T ss_pred EEECCCC
Confidence 9999995
No 136
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=87.82 E-value=0.88 Score=43.42 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=46.0
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhh
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVS 132 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar 132 (294)
+++-+.-...+..++ ..++|+|+||... . ..++..|+...+.+||+|- |+..+ .+.+.+.+++
T Consensus 89 GiTi~~~~~~~~~~~-~~~~iiDtpGh~~--------f-----~~~~~~~~~~aD~~ilVvD-a~~g~~~qt~~~l~~~~ 153 (434)
T 1zun_B 89 GITIDVAYRYFSTAK-RKFIIADTPGHEQ--------Y-----TRNMATGASTCDLAIILVD-ARYGVQTQTRRHSYIAS 153 (434)
T ss_dssp -CCCCCEEEEEECSS-EEEEEEECCCSGG--------G-----HHHHHHHHTTCSEEEEEEE-TTTCSCHHHHHHHHHHH
T ss_pred CcEEEeeeeEeecCC-ceEEEEECCChHH--------H-----HHHHHHHHhhCCEEEEEEE-CCCCCcHHHHHHHHHHH
Confidence 344333333344433 4699999999432 1 2334457788886666554 44332 2334456666
Q ss_pred hcCCCCC-eEEEEeccchhh
Q psy8958 133 QMDPQGK-RTIFVLTKVSQQ 151 (294)
Q Consensus 133 ~~DP~G~-RTIGVlTK~D~~ 151 (294)
.. |. ..|.|+||+|+.
T Consensus 154 ~~---~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 154 LL---GIKHIVVAINKMDLN 170 (434)
T ss_dssp HT---TCCEEEEEEECTTTT
T ss_pred Hc---CCCeEEEEEEcCcCC
Confidence 65 33 578999999964
No 137
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.79 E-value=1.1 Score=35.99 Aligned_cols=69 Identities=22% Similarity=0.421 Sum_probs=39.3
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC--CCCceEEEeccCCCcchh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS--NPNAIILCIQDGSVDAER-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~--~p~sIILaV~~a~~D~an-s~al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||........ .-+.+...|+. ... +++.|+++.. +.+ ...+..+++ .+.-.|-|.||
T Consensus 54 ~~~~l~Dt~G~~~~~~~~-------~~~~~~~~~~~~~~~~-~~i~v~d~~~-~~~~~~~~~~~~~---~~~piilv~nK 121 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANS-------IDEIIARDYIINEKPD-LVVNIVDATA-LERNLYLTLQLME---MGANLLLALNK 121 (188)
T ss_dssp EEEEEEECCCCSCCSSSS-------HHHHHHHHHHHHHCCS-EEEEEEEGGG-HHHHHHHHHHHHT---TTCCEEEEEEC
T ss_pred cEEEEEECCCcCcccccc-------HHHHHHHHHHhccCCC-EEEEEecchh-HHHHHHHHHHHHh---cCCCEEEEEEh
Confidence 579999999987643211 11234455554 344 4555666553 322 122223333 45678999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 122 ~Dl~ 125 (188)
T 2wjg_A 122 MDLA 125 (188)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 9964
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=87.62 E-value=1.3 Score=43.50 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=39.3
Q ss_pred CCceEEeCCCCc-ccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC--cchhcHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGII-STSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV--DAERSNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~-~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~--D~ans~al~lar~~DP~G~RTIGVlTK 147 (294)
..++|+|+||+. ......+... -.....|++..+.+|++ ++++. +....+.+++ + .+...|-|+||
T Consensus 291 ~~~~l~DTaG~~~~~~~~ve~~g-----i~~~~~~~~~aD~vl~V-vD~s~~~s~~~~~il~~---l--~~~piivV~NK 359 (482)
T 1xzp_A 291 ILFRIVDTAGVRSETNDLVERLG-----IERTLQEIEKADIVLFV-LDASSPLDEEDRKILER---I--KNKRYLVVINK 359 (482)
T ss_dssp EEEEEEESSCCCSSCCTTCCCCC-----HHHHHHHHHHCSEEEEE-EETTSCCCHHHHHHHHH---H--TTSSEEEEEEE
T ss_pred eEEEEEECCCccccchhhHHHHH-----HHHHHHHhhcccEEEEE-ecCCCCCCHHHHHHHHH---h--cCCCEEEEEEC
Confidence 359999999987 4322111110 12234577777755555 44443 2223333333 3 24678999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 360 ~DL~ 363 (482)
T 1xzp_A 360 VDVV 363 (482)
T ss_dssp CSSC
T ss_pred cccc
Confidence 9963
No 139
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=87.46 E-value=0.96 Score=43.75 Aligned_cols=72 Identities=15% Similarity=0.279 Sum_probs=43.0
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCC-CeEEEEecc
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQG-KRTIFVLTK 147 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G-~RTIGVlTK 147 (294)
.-.++.|||+||.... .......+.. +. .+..|..++ .|++|... +++...++.+.+.- .-+..|+||
T Consensus 179 ~~~D~vIIDT~G~~~~-----~~~l~~~l~~-i~-~~~~~d~vl-lVvda~~g---~~~~~~~~~~~~~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE-----EKGLLEEMKQ-IK-EITNPDEII-LVIDGTIG---QQAGIQAKAFKEAVGEIGSIIVTK 247 (432)
T ss_dssp SSCSEEEEECCCSCSS-----HHHHHHHHHH-TT-SSSCCSEEE-EEEEGGGG---GGHHHHHHHHHTTSCSCEEEEEEC
T ss_pred hCCCEEEEcCCCCccc-----cHHHHHHHHH-HH-HHhcCccee-EEeecccc---HHHHHHHHHHhhcccCCeEEEEeC
Confidence 4468999999998642 1222222222 22 223566544 55555432 46777778777643 338899999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|..
T Consensus 248 ~D~~ 251 (432)
T 2v3c_C 248 LDGS 251 (432)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 9953
No 140
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=87.30 E-value=0.38 Score=44.32 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=39.6
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-ch--hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AE--RSNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~a--ns~al~lar~~DP~G~RTIGVlTK 147 (294)
..++|+|+||- +....+...|++..+.+|+++-..+.+ +. ......+.+.....+.-.|.|+||
T Consensus 209 ~~l~i~Dt~G~-------------~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK 275 (329)
T 3o47_A 209 ISFTVWDVGGQ-------------DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 275 (329)
T ss_dssp EEEEEEECC------------------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEEC
T ss_pred EEEEEEECCCC-------------HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEEC
Confidence 46999999992 223456778888888666655443321 11 112233444444446778999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 276 ~Dl 278 (329)
T 3o47_A 276 QDL 278 (329)
T ss_dssp TTS
T ss_pred ccC
Confidence 995
No 141
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=87.29 E-value=0.91 Score=44.98 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=42.5
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
..++|+|+||..... ..+..|+.....+|++|-+.+- ...+...++.++ ..+...|.|+||+|
T Consensus 82 ~~i~liDTPG~~df~-------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~---~~~ipiivviNK~D 145 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFS-------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR---LRDTPILTFMNKLD 145 (529)
T ss_dssp EEEEEECCCCSTTCC-------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT---TTTCCEEEEEECTT
T ss_pred eEEEEEECCCChhHH-------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH---HcCCCEEEEEcCcC
Confidence 579999999974321 3456788888877776655442 222333344444 44677899999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 146 l~ 147 (529)
T 2h5e_A 146 RD 147 (529)
T ss_dssp SC
T ss_pred Cc
Confidence 63
No 142
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.25 E-value=0.63 Score=38.25 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=41.3
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhh-cCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQ-MDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~-~DP~G~RTIGVlT 146 (294)
...+.|+|+||... ..+...|++..+.+|+++-..+.+ +.+. ..+....+ ....+.-.|-|+|
T Consensus 75 ~~~~~l~Dt~G~~~--------------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~N 140 (196)
T 2atv_A 75 VVSMEILDTAGQED--------------TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGN 140 (196)
T ss_dssp EEEEEEEECCCCCC--------------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEEEEEECCCCCc--------------ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence 35689999999654 255667788788776665443321 1111 11232332 3344677899999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|.|+.
T Consensus 141 K~Dl~ 145 (196)
T 2atv_A 141 KADLD 145 (196)
T ss_dssp CGGGG
T ss_pred Ccccc
Confidence 99963
No 143
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.21 E-value=0.88 Score=35.95 Aligned_cols=69 Identities=12% Similarity=0.036 Sum_probs=36.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhh-cCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQ-MDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~-~DP~G~RTIGVlTK 147 (294)
..+.++|+||.... .-..+...|++..+++|+++...+.+ +.+. ..+...++ ....+.-.|.|+||
T Consensus 52 ~~~~~~D~~g~~~~-----------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK 120 (175)
T 2nzj_A 52 TTLVVVDTWEAEKL-----------DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120 (175)
T ss_dssp EEEEEECCC------------------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred EEEEEEecCCCCcc-----------chhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence 46899999996431 01345567888888777766544321 1111 12222333 23446778999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 121 ~Dl 123 (175)
T 2nzj_A 121 ADL 123 (175)
T ss_dssp TTC
T ss_pred hhh
Confidence 995
No 144
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.12 E-value=0.67 Score=38.46 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=42.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||..... .+...|+++.+.+|+++-..+.+ +.+ ...+...+...| +.-.|-|+||
T Consensus 57 ~~~~i~Dt~G~~~~~-------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK 122 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYS-------------RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-NVPIVLVGTK 122 (212)
T ss_dssp EEEEEECCCCCCCCC-------------C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCCEEEEEEC
T ss_pred EEEEEEECCCcHHHH-------------HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeC
Confidence 579999999974321 34567888888777766433321 112 133455555555 5778999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 123 ~Dl~ 126 (212)
T 2j0v_A 123 LDLR 126 (212)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9964
No 145
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=86.91 E-value=1.2 Score=40.29 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=45.2
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh----cHHHHhhhhcCCCCCeEEEE
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER----SNVTDLVSQMDPQGKRTIFV 144 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an----s~al~lar~~DP~G~RTIGV 144 (294)
-..+.|+|+||... ........+...|++..+.+|+++-..+.+ +.+ ...+...+...| +.-.+.|
T Consensus 51 ~~~l~i~Dt~G~~~--------~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~-~~piilv 121 (307)
T 3r7w_A 51 NMTLNLWDCGGQDV--------FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSP-DAKIFVL 121 (307)
T ss_dssp TEEEEEEEECCSHH--------HHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCT-TCEEEEE
T ss_pred ceEEEEEECCCcHH--------HhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 56799999999432 122333567888889888776665443322 111 112333444444 4789999
Q ss_pred eccchhh
Q psy8958 145 LTKVSQQ 151 (294)
Q Consensus 145 lTK~D~~ 151 (294)
+||.|+.
T Consensus 122 ~NK~Dl~ 128 (307)
T 3r7w_A 122 LHKMDLV 128 (307)
T ss_dssp EECGGGS
T ss_pred Eeccccc
Confidence 9999964
No 146
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=86.77 E-value=0.32 Score=38.75 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=39.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcH---HHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSN---VTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~---al~lar~~DP~G~RTIGVlTK 147 (294)
..+.|+|+||.... ..+...|+...+.+|+++-..+. -.-.. .+...++.-+ ....|.|+||
T Consensus 58 ~~~~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~p~ilv~nK 122 (181)
T 3tw8_B 58 VKLQIWDTAGQERF-------------RTITSTYYRGTHGVIVVYDVTSA-ESFVNVKRWLHEINQNCD-DVCRILVGNK 122 (181)
T ss_dssp EEEEEEEETTGGGC-------------SSCCGGGGTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHCT-TSEEEEEEEC
T ss_pred EEEEEEcCCCchhh-------------hhhHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 46999999994322 23566788888877665544332 11111 2233333333 4678999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 123 ~Dl 125 (181)
T 3tw8_B 123 NDD 125 (181)
T ss_dssp TTC
T ss_pred CCC
Confidence 995
No 147
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=86.74 E-value=0.74 Score=40.84 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=42.5
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||.... ..+...|+++.+.+|+++-..+.+ +.+. ..+...+...+ +...|.|+||
T Consensus 203 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK 268 (332)
T 2wkq_A 203 VNLGLWDTAGLEDY-------------DRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTK 268 (332)
T ss_dssp EEEEEEEECCCGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEEC
T ss_pred EEEEEEeCCCchhh-------------hHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEc
Confidence 45779999996432 256678888888776655443321 1111 22345555555 6789999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 269 ~Dl~ 272 (332)
T 2wkq_A 269 LDLR 272 (332)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 9964
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=86.51 E-value=0.69 Score=45.12 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=42.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..++|+|+||.. + ....+..|+...+.+||+| +|+.. ..+.+.+.+++.. |...|-|+||+
T Consensus 73 ~~i~iiDtPGh~------------~-~~~~~~~~~~~aD~~ilVv-da~~g~~~qt~e~l~~~~~~---~ip~IvviNK~ 135 (482)
T 1wb1_A 73 YRITLVDAPGHA------------D-LIRAVVSAADIIDLALIVV-DAKEGPKTQTGEHMLILDHF---NIPIIVVITKS 135 (482)
T ss_dssp EEEEECCCSSHH------------H-HHHHHHHHTTSCCEEEEEE-ETTTCSCHHHHHHHHHHHHT---TCCBCEEEECT
T ss_pred EEEEEEECCChH------------H-HHHHHHHHHhhCCEEEEEE-ecCCCccHHHHHHHHHHHHc---CCCEEEEEECC
Confidence 579999999941 2 2344556777787666655 45432 2344555666664 56679999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 136 Dl~ 138 (482)
T 1wb1_A 136 DNA 138 (482)
T ss_dssp TSS
T ss_pred Ccc
Confidence 964
No 149
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.95 E-value=0.53 Score=46.67 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=42.4
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCe-EEEEecc
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKR-TIFVLTK 147 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~R-TIGVlTK 147 (294)
.-.++.|||+||..... ......+..+.. ++ .|..+ |.|++|... +++...++.+... .. ++.|+||
T Consensus 182 ~~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i-~pd~v-llVvDa~~g---~~~~~~a~~~~~~-~~i~gvVlNK 249 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AI-QPDNI-VYVMDASIG---QACEAQAKAFKDK-VDVASVIVTK 249 (504)
T ss_dssp TTCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HH-CCSEE-EEEEETTCC---TTHHHHHHHHHHH-HCCCCEEEEC
T ss_pred CCCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hh-cCceE-EEEEecccc---ccHHHHHHHHHhh-cCceEEEEeC
Confidence 34589999999987521 233344444333 33 56655 556666543 2356666666543 22 5789999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|..
T Consensus 250 ~D~~ 253 (504)
T 2j37_W 250 LDGH 253 (504)
T ss_dssp TTSC
T ss_pred Cccc
Confidence 9953
No 150
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=85.77 E-value=0.39 Score=43.68 Aligned_cols=74 Identities=12% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
..++++|+||+...+. ..+.......+..+++.-..+ +.|+++.. +...+- .+++.+...+.-.|.|++|+|+
T Consensus 56 ~~i~~iDTpG~~~~~~----~~l~~~~~~~~~~~l~~~D~v-l~Vvd~~~-~~~~~~-~i~~~l~~~~~P~ilvlNK~D~ 128 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEK----RAINRLMNKAASSSIGDVELV-IFVVEGTR-WTPDDE-MVLNKLREGKAPVILAVNKVDN 128 (301)
T ss_dssp EEEEEESSSSCCHHHH----HHHHHHHTCCTTSCCCCEEEE-EEEEETTC-CCHHHH-HHHHHHHSSSSCEEEEEESTTT
T ss_pred eeEEEEECcCCCccch----hhHHHHHHHHHHHHHhcCCEE-EEEEeCCC-CCHHHH-HHHHHHHhcCCCEEEEEECccc
Confidence 4699999999862110 112223334466777777754 45555554 544332 3344443446778999999996
Q ss_pred h
Q psy8958 151 Q 151 (294)
Q Consensus 151 ~ 151 (294)
.
T Consensus 129 ~ 129 (301)
T 1ega_A 129 V 129 (301)
T ss_dssp C
T ss_pred C
Confidence 4
No 151
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.71 E-value=1 Score=36.59 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT 146 (294)
...+.|+|+||.... +.+...|+...+.+|+++-..+.+ +.+ ...+...++..| +...|-|.|
T Consensus 54 ~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n 119 (184)
T 1m7b_A 54 RIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGC 119 (184)
T ss_dssp EEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEE
T ss_pred EEEEEEEECCCChhh-------------hhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEE
Confidence 356899999995322 245667888888776665443321 111 122344445444 477899999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|.|+.
T Consensus 120 K~Dl~ 124 (184)
T 1m7b_A 120 KSDLR 124 (184)
T ss_dssp CGGGG
T ss_pred cchhh
Confidence 99964
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=85.51 E-value=1.6 Score=44.08 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=49.7
Q ss_pred cccccceEEEEeCCCC--CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHh
Q psy8958 55 TVSNEVISMSVKGPGL--QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDL 130 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~--p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~l 130 (294)
++....+.+....++- ..++|+|+||.... ...+..+++.-..+|| |++|+... .+...+.+
T Consensus 55 TI~~~~~~~~~~~~dg~~~~inliDTPGh~dF-------------~~ev~r~l~~aD~aIL-VVDa~~gv~~qt~~~~~~ 120 (600)
T 2ywe_A 55 TVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF-------------SYEVSRALAACEGALL-LIDASQGIEAQTVANFWK 120 (600)
T ss_dssp -CCCCSEEEEEECTTSCEEEEEEECCCCSGGG-------------HHHHHHHHHTCSEEEE-EEETTTBCCHHHHHHHHH
T ss_pred eeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH-------------HHHHHHHHHhCCEEEE-EEECCCCccHHHHHHHHH
Confidence 3445566666654332 57899999997532 2345566777776666 55555433 34444555
Q ss_pred hhhcCCCCCeEEEEeccchhh
Q psy8958 131 VSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 131 ar~~DP~G~RTIGVlTK~D~~ 151 (294)
+.. .+...|.|++|+|+.
T Consensus 121 a~~---~~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 121 AVE---QDLVIIPVINKIDLP 138 (600)
T ss_dssp HHH---TTCEEEEEEECTTST
T ss_pred HHH---CCCCEEEEEeccCcc
Confidence 554 357799999999963
No 153
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=85.45 E-value=1.3 Score=42.39 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=44.0
Q ss_pred EEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-------c--hhcHHHHhhhh
Q psy8958 63 MSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-------A--ERSNVTDLVSQ 133 (294)
Q Consensus 63 leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-------~--ans~al~lar~ 133 (294)
..+..++ ..++|+|+||... ....+..|+...+.+||+|-..+ . + .+.+.+.+++.
T Consensus 77 ~~~~~~~-~~~~iiDtpG~~~-------------f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~ 141 (435)
T 1jny_A 77 MRFETKK-YFFTIIDAPGHRD-------------FVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT 141 (435)
T ss_dssp CEEECSS-CEEEECCCSSSTT-------------HHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH
T ss_pred EEEecCC-eEEEEEECCCcHH-------------HHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH
Confidence 3455554 3699999999542 12345668888887766655443 3 2 22334455555
Q ss_pred cCCCCCeEEEEeccchhh
Q psy8958 134 MDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 134 ~DP~G~RTIGVlTK~D~~ 151 (294)
.. -..-|.|+||+|+.
T Consensus 142 ~~--~~~iivviNK~Dl~ 157 (435)
T 1jny_A 142 MG--LDQLIVAVNKMDLT 157 (435)
T ss_dssp TT--CTTCEEEEECGGGS
T ss_pred cC--CCeEEEEEEcccCC
Confidence 43 13468999999964
No 154
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=85.41 E-value=1.3 Score=45.45 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=42.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc--hhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA--ERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~--ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||... ....+..|++.-+.+||+|- |+... .+...++.++. .+...|.|+||+
T Consensus 82 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~aIlVvD-a~~gv~~qt~~~~~~~~~---~~ip~ilviNKi 144 (704)
T 2rdo_7 82 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAVMVYC-AVGGVQPQSETVWRQANK---YKVPRIAFVNKM 144 (704)
T ss_pred eeEEEEeCCCccc-------------hHHHHHHHHHHCCEEEEEEe-CCCCCcHHHHHHHHHHHH---cCCCEEEEEeCC
Confidence 6799999999653 12456677777776665554 44333 23444555544 467889999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 145 D~~ 147 (704)
T 2rdo_7 145 DRM 147 (704)
T ss_pred Ccc
Confidence 963
No 155
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=85.18 E-value=0.57 Score=47.93 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=41.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC-CcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS-VDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~-~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
..+.|+|+||..... ..+..|++..+.+|++|-+.+ ....+...++.+++. +...|.|++|.|
T Consensus 75 ~~i~liDTPG~~df~-------------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~~p~ilviNK~D 138 (693)
T 2xex_A 75 HRVNIIDTPGHVDFT-------------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY---GVPRIVFVNKMD 138 (693)
T ss_dssp EEEEEECCCCCSSCC-------------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTT
T ss_pred eeEEEEECcCCcchH-------------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc---CCCEEEEEECCC
Confidence 569999999986421 234566666776655554433 223344455555553 678999999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 139 l~ 140 (693)
T 2xex_A 139 KL 140 (693)
T ss_dssp ST
T ss_pred cc
Confidence 64
No 156
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.08 E-value=0.32 Score=39.63 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=38.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhhcC--CCCCeEEEEec
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQMD--PQGKRTIFVLT 146 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~~D--P~G~RTIGVlT 146 (294)
..++|+|+||... ...+...|+...+.+|+++-..+.+ +.+. ..+....++. ..+...|.|+|
T Consensus 56 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~n 122 (199)
T 2gf0_A 56 CTLQITDTTGSHQ-------------FPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122 (199)
T ss_dssp EEEEEEECCGGGS-------------CHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEE
T ss_pred EEEEEEeCCChHH-------------hHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 4699999999432 1245667777777766665443321 1111 1222233322 12467899999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|.|+
T Consensus 123 K~Dl 126 (199)
T 2gf0_A 123 KCDE 126 (199)
T ss_dssp CTTC
T ss_pred CccC
Confidence 9995
No 157
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=85.05 E-value=0.73 Score=47.11 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=43.8
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
..++|+|+||... ....+..|+...+.+|++|-+.+. ...+...++.+++. +...|.|+||.|
T Consensus 77 ~~i~liDTPG~~d-------------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~~p~ivviNKiD 140 (691)
T 1dar_A 77 HRINIIDTPGHVD-------------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY---KVPRIAFANKMD 140 (691)
T ss_dssp EEEEEECCCSSTT-------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEECTT
T ss_pred eEEEEEECcCccc-------------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc---CCCEEEEEECCC
Confidence 5799999999743 124566777777866665554432 23344556666654 678899999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 141 ~~ 142 (691)
T 1dar_A 141 KT 142 (691)
T ss_dssp ST
T ss_pred cc
Confidence 64
No 158
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.92 E-value=0.64 Score=43.52 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=38.1
Q ss_pred CCceEEeCCCCcccCCCC-CChhHHHHHHHHhhhhcCCC-------------CceEEEeccCCCcchhcHHHHhhhhcCC
Q psy8958 71 QRMVLVDLPGIISTSTQD-MASDTRDLIRQMTQTHMSNP-------------NAIILCIQDGSVDAERSNVTDLVSQMDP 136 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~-q~~~~~~~i~~Lv~~Yi~~p-------------~sIILaV~~a~~D~ans~al~lar~~DP 136 (294)
..|+++|+||+-...... .-..+...|.+....|+... +++++.|.++...+...+. .+.+.+.
T Consensus 95 ~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~-~~~~~l~- 172 (361)
T 2qag_A 95 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH- 172 (361)
T ss_dssp EEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH-HHHHHTC-
T ss_pred cceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH-HHHHHhc-
Confidence 469999999985433211 11123333444444555432 2455666654544544432 4455555
Q ss_pred CCCeEEEEeccchhh
Q psy8958 137 QGKRTIFVLTKVSQQ 151 (294)
Q Consensus 137 ~G~RTIGVlTK~D~~ 151 (294)
.+.-.|-|+||+|+.
T Consensus 173 ~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 173 NKVNIVPVIAKADTL 187 (361)
T ss_dssp S-SCEEEEEECCSSS
T ss_pred cCCCEEEEEECCCCC
Confidence 457799999999964
No 159
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=84.38 E-value=2.7 Score=38.72 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=55.1
Q ss_pred CcchhhhhhhhhhhccCCCCCCCccchhhhHHHHHHHHHhhhhh---cC-CChHHHHHHHcCCcccCCCCCeEEEEeCCC
Q psy8958 180 KHTIFVLTKVSQQVSMSPPLSPSGQKHRLIKSFIVCLQVDLAEE---NH-SDPQRIKKILAGKLFPMKALGYFAVVTGRG 255 (294)
Q Consensus 180 ~~t~~~r~~~E~~fF~~~pW~~~~~~~r~~~a~~~~~~~d~~~~---~~-~~~~~~~~il~~~~~~L~~lG~~~v~~~~~ 255 (294)
..+..++.+.|..||.+.||-.....+.++++|+..++--|.+. .+ ....++.+.|....-.|++||-...-. +
T Consensus 251 ~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i~~~l~~~~~~l~~lg~~~~~~-~- 328 (360)
T 3t34_A 251 NVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLINKTVLELETELSRLGKPIAHG-T- 328 (360)
T ss_dssp TCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHTTTTCC--------------
T ss_pred CCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCCCCC-H-
Confidence 34566788899999999987666556677888887777665543 22 245678899999999999999752221 2
Q ss_pred CCCCccHHHHHHHHHHHhccChhhhhh
Q psy8958 256 GKKDESIQDIKEYEENFFKKSKLFSTK 282 (294)
Q Consensus 256 ~~~~~~~~~~~~~e~~~f~~~~~~~~~ 282 (294)
.......+.+.+..+++.-.+|...
T Consensus 329 --~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (360)
T 3t34_A 329 --DSRVDPAIMERRSAISKRLELYRAA 353 (360)
T ss_dssp ----------CCCTTHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122223345555666655555543
No 160
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=83.88 E-value=1.3 Score=37.25 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=42.4
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlT 146 (294)
...+.|+|+||.... +.+...|+++.+.+|+++-..+.+ +.+ ...+...++.-+ +...|.|.|
T Consensus 75 ~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~n 140 (205)
T 1gwn_A 75 RIELSLWDTSGSPYY-------------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLVGC 140 (205)
T ss_dssp EEEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-TCEEEEEEE
T ss_pred EEEEEEEeCCCcHhh-------------hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEe
Confidence 357999999995432 235667888888776665443321 111 122344455444 478899999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|+|+.
T Consensus 141 K~Dl~ 145 (205)
T 1gwn_A 141 KSDLR 145 (205)
T ss_dssp CGGGG
T ss_pred chhhc
Confidence 99964
No 161
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=84.33 E-value=0.21 Score=41.47 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=41.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc--HHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS--NVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans--~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||... ...+...|+++.+.+|+++-..+.+ +.+. ..+...+...+ +...|-|+||
T Consensus 78 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK 143 (204)
T 3th5_A 78 VNLGLWDTAGQED-------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTK 143 (204)
Confidence 4678999999432 2356677888888777665433321 2221 23344444434 5678999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 144 ~Dl~ 147 (204)
T 3th5_A 144 LDLR 147 (204)
Confidence 9963
No 162
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=83.66 E-value=1.3 Score=37.43 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=45.0
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.|+|+||.... +.+...|+++.+.+|+++-..+.+ +.+ ...+...+...+ +.-.|-|.||
T Consensus 75 ~~l~i~Dt~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK 140 (214)
T 3q3j_B 75 VELSLWDTSGSPYY-------------DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-STRVLLIGCK 140 (214)
T ss_dssp EEEEEEEECCSGGG-------------TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-TSEEEEEEEC
T ss_pred EEEEEEECCCCHhH-------------HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEEC
Confidence 47899999995322 346778999988777766554432 222 344556666654 4778999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 141 ~Dl~ 144 (214)
T 3q3j_B 141 TDLR 144 (214)
T ss_dssp GGGG
T ss_pred hhhc
Confidence 9964
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=83.53 E-value=0.51 Score=47.13 Aligned_cols=67 Identities=12% Similarity=0.243 Sum_probs=43.5
Q ss_pred CCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEe
Q psy8958 68 PGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVL 145 (294)
Q Consensus 68 P~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVl 145 (294)
++-..++|+|+||.-.. ..|...|++..+.+||+| +++.. ..+.+.+..++.. +...|-|+
T Consensus 49 ~~g~~i~~iDTPGhe~f-------------~~~~~~~~~~aD~vILVV-Da~dg~~~qt~e~l~~~~~~---~vPiIVVi 111 (537)
T 3izy_P 49 PSGEKITFLDTPGHAAF-------------SAMRARGTQVTDIVILVV-AADDGVMKQTVESIQHAKDA---HVPIVLAI 111 (537)
T ss_dssp SCSSCCBCEECSSSCCT-------------TTSBBSSSBSBSSCEEEC-BSSSCCCHHHHHHHHHHHTT---TCCEEECC
T ss_pred CCCCEEEEEECCChHHH-------------HHHHHHHHccCCEEEEEE-ECCCCccHHHHHHHHHHHHc---CCcEEEEE
Confidence 34457999999994321 245667888877666555 44432 2344555555554 56799999
Q ss_pred ccchhh
Q psy8958 146 TKVSQQ 151 (294)
Q Consensus 146 TK~D~~ 151 (294)
||.|+.
T Consensus 112 NKiDl~ 117 (537)
T 3izy_P 112 NKCDKA 117 (537)
T ss_dssp BSGGGT
T ss_pred eccccc
Confidence 999963
No 164
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=83.51 E-value=0.48 Score=44.37 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=44.2
Q ss_pred EeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC----cc-hh-cHHHHhhhhcCC--
Q psy8958 65 VKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV----DA-ER-SNVTDLVSQMDP-- 136 (294)
Q Consensus 65 I~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~----D~-an-s~al~lar~~DP-- 136 (294)
+.-++...++|+|+||++..+.... .+... ..++++..+.+| .|++++. +. .. ..++...+.+++
T Consensus 200 v~~~~~~~~~l~DtPG~i~~a~~~~--~l~~~----fl~~i~~~d~ll-~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l 272 (342)
T 1lnz_A 200 VETDDGRSFVMADLPGLIEGAHQGV--GLGHQ----FLRHIERTRVIV-HVIDMSGLEGRDPYDDYLTINQELSEYNLRL 272 (342)
T ss_dssp EECSSSCEEEEEEHHHHHHHTTCTT--TTHHH----HHHHHHHCCEEE-EEEESSCSSCCCHHHHHHHHHHHHHHSCSST
T ss_pred EEeCCCceEEEecCCCCcccccccc--hhHHH----HHHHHHhccEEE-EEEECCcccccChHHHHHHHHHHHHHhhhhh
Confidence 3334445799999999987554332 11111 122334455554 4555542 22 11 223445566665
Q ss_pred CCCeEEEEeccchhh
Q psy8958 137 QGKRTIFVLTKVSQQ 151 (294)
Q Consensus 137 ~G~RTIGVlTK~D~~ 151 (294)
...-.|-|+||+|+.
T Consensus 273 ~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 273 TERPQIIVANKMDMP 287 (342)
T ss_dssp TTSCBCBEEECTTST
T ss_pred cCCCEEEEEECccCC
Confidence 356789999999953
No 165
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=83.41 E-value=0.99 Score=38.90 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=36.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHH---hh-hhcCCCCCeEEEEec
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTD---LV-SQMDPQGKRTIFVLT 146 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~---la-r~~DP~G~RTIGVlT 146 (294)
.++.|||+||...... ....-..++ .++.. .+|+.|+++.......+... .. ......+...+.|+|
T Consensus 109 ~d~iiiDtpG~~~~~~------~~~l~~~~~-~~~~~--~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~N 179 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFL------FHEFGVRLM-ENLPY--PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALN 179 (262)
T ss_dssp CSEEEEECCSSHHHHH------HSHHHHHHH-HTSSS--CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CCEEEEeCCCccchhh------hhhhHHHHH-HHHhh--ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEe
Confidence 5799999999764221 111122333 34444 67777776653222111111 01 111112356789999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|+|+
T Consensus 180 K~D~ 183 (262)
T 1yrb_A 180 KVDL 183 (262)
T ss_dssp CGGG
T ss_pred cccc
Confidence 9995
No 166
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.32 E-value=2.2 Score=38.91 Aligned_cols=73 Identities=18% Similarity=0.327 Sum_probs=43.2
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
.-.++.|||+||...... .......++.+ ...+ .+..++|+ +++.. .+++++.++.+.+.-.-+..|+||.
T Consensus 179 ~~~D~ViIDTpg~~~~~~---~~~l~~el~~i-~~~~-~~d~vllV-vda~~---g~~~~~~~~~~~~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGE---EAALLEEMKNI-YEAI-KPDEVTLV-IDASI---GQKAYDLASKFNQASKIGTIIITKM 249 (297)
T ss_dssp TTCSEEEEECCCSCCTTC---HHHHHHHHHHH-HHHH-CCSEEEEE-EEGGG---GGGHHHHHHHHHHTCTTEEEEEECG
T ss_pred CCCCEEEEeCCCCccccc---HHHHHHHHHHH-HHHh-cCCEEEEE-eeCCc---hHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 346899999999875211 11233333333 2222 45555555 44442 4777888888776433367789999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|.
T Consensus 250 D~ 251 (297)
T 1j8m_F 250 DG 251 (297)
T ss_dssp GG
T ss_pred CC
Confidence 84
No 167
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=83.14 E-value=1.7 Score=43.88 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=47.3
Q ss_pred cccccceEEEEeCCC--CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHh
Q psy8958 55 TVSNEVISMSVKGPG--LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDL 130 (294)
Q Consensus 55 ~~S~~~I~leI~gP~--~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~l 130 (294)
++....+.+...+++ -..++|+|+||.... ...+..|++.-..+||+| +|+.- ..+...+..
T Consensus 53 Ti~~~~~~~~~~~~~g~~~~l~liDTPGh~dF-------------~~ev~~~l~~aD~aILVV-Da~~gv~~qt~~~~~~ 118 (599)
T 3cb4_D 53 TIKAQSVTLDYKASDGETYQLNFIDTPGHVDF-------------SYEVSRSLAACEGALLVV-DAGQGVEAQTLANCYT 118 (599)
T ss_dssp ----CEEEEEEECTTSCEEEEEEEECCCCGGG-------------HHHHHHHHHHCSEEEEEE-ETTTCCCTHHHHHHHH
T ss_pred eeeeeEEEEEEecCCCCeEEEEEEECCCchHH-------------HHHHHHHHHHCCEEEEEE-ECCCCCCHHHHHHHHH
Confidence 344555666655422 357999999996431 234566677777665555 44432 334444555
Q ss_pred hhhcCCCCCeEEEEeccchhh
Q psy8958 131 VSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 131 ar~~DP~G~RTIGVlTK~D~~ 151 (294)
+... +...|.|+||.|+.
T Consensus 119 ~~~~---~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 119 AMEM---DLEVVPVLNKIDLP 136 (599)
T ss_dssp HHHT---TCEEEEEEECTTST
T ss_pred HHHC---CCCEEEeeeccCcc
Confidence 5543 56799999999963
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=82.34 E-value=4.3 Score=37.43 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC----cchhc-HHHHhhhhcCCCCCeEEEEe
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV----DAERS-NVTDLVSQMDPQGKRTIFVL 145 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~----D~ans-~al~lar~~DP~G~RTIGVl 145 (294)
..+.++|+||+...+..... .+. ...+..+....+.+ |.|++++. |+.++ ..+...+..-+ +.-.|-|+
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~-~~~---~~~~~~~~~~ad~i-llV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERN-EIE---KQAILALRYLGNLI-IYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSC-HHH---HHHHHGGGGTCSEE-EEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred ceEEEEeCCCccccchhhhh-HHH---HHHHHHHHhcCCEE-EEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 46899999999765432221 222 22333444455544 45555443 44443 33444444333 67899999
Q ss_pred ccchh
Q psy8958 146 TKVSQ 150 (294)
Q Consensus 146 TK~D~ 150 (294)
||.|+
T Consensus 288 NK~Dl 292 (357)
T 2e87_A 288 NKIDV 292 (357)
T ss_dssp CCTTT
T ss_pred ECccc
Confidence 99995
No 169
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=82.14 E-value=1.1 Score=43.01 Aligned_cols=72 Identities=11% Similarity=0.175 Sum_probs=44.0
Q ss_pred EEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc----HHHHhhhhcCCCCC
Q psy8958 64 SVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS----NVTDLVSQMDPQGK 139 (294)
Q Consensus 64 eI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans----~al~lar~~DP~G~ 139 (294)
.+...+ ..+.|+|+||... .+.+...|++..+.+|+++ +++.--.-. ....+.+.....+.
T Consensus 360 ~~~~~~-~~~~l~Dt~G~~~-------------~~~~~~~~~~~ad~~i~V~-D~~~~~s~~~~~~~~~~~~~~~~~~~~ 424 (497)
T 3lvq_E 360 TVTYKN-VKFNVWDVGGQDK-------------IRPLWRHYYTGTQGLIFVV-DCADRDRIDEARQELHRIINDREMRDA 424 (497)
T ss_dssp EEESSS-CEEEEEEECCCGG-------------GSGGGGGGGTTCCEEEEEE-ETTCGGGHHHHHHHHHHHHTSGGGTTC
T ss_pred EEEeCC-EEEEEEECCCcHH-------------HHHHHHHHhccCCEEEEEE-ECcchhHHHHHHHHHHHHhhhhhcCCC
Confidence 344443 4799999999432 2345788999988666654 444321111 12233344444567
Q ss_pred eEEEEeccchh
Q psy8958 140 RTIFVLTKVSQ 150 (294)
Q Consensus 140 RTIGVlTK~D~ 150 (294)
-.|-|++|.|+
T Consensus 425 p~ilv~NK~Dl 435 (497)
T 3lvq_E 425 IILIFANKQDL 435 (497)
T ss_dssp EEEEEEECCSS
T ss_pred cEEEEEECCCC
Confidence 88999999995
No 170
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=82.03 E-value=1.2 Score=35.02 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=36.6
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh--cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER--SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an--s~al~lar~~DP~G~RTIGVlTK 147 (294)
..|.++|+||...... .+...|++..+.+|+++-..+.+ +.. .....+.+.....+.-.|-|.||
T Consensus 51 ~~~~i~D~~g~~~~~~------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGG------------WLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEEECCCCC--------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEECCCccccch------------hhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 4688999999643211 14445666677666655443321 111 11223333444446788999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
.|+
T Consensus 119 ~Dl 121 (169)
T 3q85_A 119 SDL 121 (169)
T ss_dssp TTC
T ss_pred cch
Confidence 995
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=81.57 E-value=0.84 Score=44.22 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=36.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc---------hhcHHHHhhhhcCCCCC-e
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA---------ERSNVTDLVSQMDPQGK-R 140 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~---------ans~al~lar~~DP~G~-R 140 (294)
..++|+|+||... ...++..|+...+.+||+|- |+... .+.+.+.+++.. |. +
T Consensus 121 ~~~~iiDtPGh~~-------------f~~~~~~~~~~aD~~ilVvD-a~~g~~e~sf~~~~qt~e~l~~~~~~---~vp~ 183 (467)
T 1r5b_A 121 RRFSLLDAPGHKG-------------YVTNMINGASQADIGVLVIS-ARRGEFEAGFERGGQTREHAVLARTQ---GINH 183 (467)
T ss_dssp EEEEECCCCC------------------------TTSCSEEEEEEE-CSTTHHHHTTSTTCCHHHHHHHHHHT---TCSS
T ss_pred eEEEEEECCCcHH-------------HHHHHHhhcccCCEEEEEEe-CCcCccccccCCCCcHHHHHHHHHHc---CCCE
Confidence 4689999999532 12334566788887766654 44322 344455566554 44 4
Q ss_pred EEEEeccchhh
Q psy8958 141 TIFVLTKVSQQ 151 (294)
Q Consensus 141 TIGVlTK~D~~ 151 (294)
-|.|+||+|+.
T Consensus 184 iivviNK~Dl~ 194 (467)
T 1r5b_A 184 LVVVINKMDEP 194 (467)
T ss_dssp EEEEEECTTST
T ss_pred EEEEEECccCC
Confidence 78999999963
No 172
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.29 E-value=1.9 Score=41.72 Aligned_cols=71 Identities=18% Similarity=0.299 Sum_probs=43.1
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
.-.++.|||+||.... .......+..+ ...+ .|..++|+ +++. ..+++...++.+.+.-.-+--|+||.
T Consensus 179 ~~~DvVIIDTaG~l~~-----d~~l~~el~~i-~~~~-~pd~vlLV-vDa~---tgq~av~~a~~f~~~l~i~GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQI-----DEPLMGELARL-KEVL-GPDEVLLV-LDAM---TGQEALSVARAFDEKVGVTGLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSC-----CHHHHHHHHHH-HHHH-CCSEEEEE-EEGG---GTTHHHHHHHHHHHHTCCCEEEEESG
T ss_pred CCCCEEEEcCCCcccc-----cHHHHHHHHHh-hhcc-CCceEEEE-Eecc---chHHHHHHHHHHHhcCCceEEEEeCc
Confidence 4568999999996643 12233333222 1222 46656554 4444 24788888888876434466689999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|.
T Consensus 248 D~ 249 (425)
T 2ffh_A 248 DG 249 (425)
T ss_dssp GG
T ss_pred CC
Confidence 84
No 173
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=80.97 E-value=0.65 Score=39.00 Aligned_cols=81 Identities=10% Similarity=0.000 Sum_probs=46.4
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhh
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVS 132 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar 132 (294)
+++-....+.+.+. ...+.|+|+||.... ..+...|+.+.+.+|+++-..+.+ +.+ ...+....
T Consensus 49 ~~~~~~~~~~~~~~-~~~~~i~Dt~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 114 (221)
T 3gj0_A 49 GVEVHPLVFHTNRG-PIKFNVWDTAGQEKF-------------GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV 114 (221)
T ss_dssp TEEEEEEEEEETTE-EEEEEEEEECSGGGT-------------SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHH
T ss_pred ceeEEEEEEEECCE-EEEEEEEeCCChHHH-------------hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 34444445544433 356999999994322 235567888888776665443321 111 12233344
Q ss_pred hcCCCCCeEEEEeccchh
Q psy8958 133 QMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 133 ~~DP~G~RTIGVlTK~D~ 150 (294)
+.-+ +...|.|+||.|+
T Consensus 115 ~~~~-~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 115 RVCE-NIPIVLCGNKVDI 131 (221)
T ss_dssp HHST-TCCEEEEEECTTS
T ss_pred HhCC-CCCEEEEEECCcc
Confidence 4333 4678999999996
No 174
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=80.95 E-value=1.6 Score=34.78 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=35.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcHH----HHhhhhcCCCCCeEEEEe
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSNV----TDLVSQMDPQGKRTIFVL 145 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~a----l~lar~~DP~G~RTIGVl 145 (294)
..|.|+|+||... ..|+++.+.+|+++-..+.+ +.+... +...+...+.+...|-|.
T Consensus 54 ~~l~i~Dt~G~~~------------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~ 115 (178)
T 2iwr_A 54 HLVLIREEAGAPD------------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115 (178)
T ss_dssp EEEEEEECSSSCC------------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEE
T ss_pred EEEEEEECCCCch------------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 4689999999542 34666777666655433221 111111 122233333567899999
Q ss_pred ccchh
Q psy8958 146 TKVSQ 150 (294)
Q Consensus 146 TK~D~ 150 (294)
||.|+
T Consensus 116 nK~Dl 120 (178)
T 2iwr_A 116 TQDRI 120 (178)
T ss_dssp ECTTC
T ss_pred ECccc
Confidence 99995
No 175
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=80.84 E-value=1.5 Score=43.30 Aligned_cols=64 Identities=9% Similarity=0.220 Sum_probs=43.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..++|+|+||..... .+...++...+.+||+|- |+.. ..+-+.+.+++.. +...|-|+||+
T Consensus 51 ~~i~~iDTPGhe~f~-------------~~~~~~~~~aD~aILVVd-a~~g~~~qT~e~l~~~~~~---~vPiIVviNKi 113 (501)
T 1zo1_I 51 GMITFLDTPGHAAFT-------------SMRARGAQATDIVVLVVA-ADDGVMPQTIEAIQHAKAA---QVPVVVAVNKI 113 (501)
T ss_dssp SCCCEECCCTTTCCT-------------TSBCSSSBSCSSEEEEEE-TTTBSCTTTHHHHHHHHHT---TCCEEEEEECS
T ss_pred EEEEEEECCCcHHHH-------------HHHHHHHhhCCEEEEEee-cccCccHHHHHHHHHHHhc---CceEEEEEEec
Confidence 479999999964322 344567777787777664 4432 3445566666654 45699999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 114 Dl~ 116 (501)
T 1zo1_I 114 DKP 116 (501)
T ss_dssp SSS
T ss_pred ccc
Confidence 963
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=80.63 E-value=2 Score=35.42 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=38.5
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcC---CCCceEEEeccCCCcchh--cHHHHhhhhcCCCCCeEEEEec
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMS---NPNAIILCIQDGSVDAER--SNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~---~p~sIILaV~~a~~D~an--s~al~lar~~DP~G~RTIGVlT 146 (294)
.+.++|+||+..... +....+..+.++..|++ .... ++.|.++...... ..+.+++.. .+...+.|.+
T Consensus 73 ~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~v~n 145 (210)
T 1pui_A 73 GKRLVDLPGYGYAEV---PEEMKRKWQRALGEYLEKRQSLQG-LVVLMDIRHPLKDLDQQMIEWAVD---SNIAVLVLLT 145 (210)
T ss_dssp TEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEE-EEEEEETTSCCCHHHHHHHHHHHH---TTCCEEEEEE
T ss_pred CEEEEECcCCccccc---CHHHHHHHHHHHHHHHHhhhcccE-EEEEEECCCCCchhHHHHHHHHHH---cCCCeEEEEe
Confidence 689999999864221 12223445566666664 3333 4445555432221 223333333 3566788999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|+|+
T Consensus 146 K~D~ 149 (210)
T 1pui_A 146 KADK 149 (210)
T ss_dssp CGGG
T ss_pred cccC
Confidence 9995
No 177
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=80.54 E-value=2 Score=44.94 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=41.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+.|+|+||..... ..+..|++.-+.+||+| +|..- ..+...++.+.. .+...|.|++|+
T Consensus 98 ~~i~liDTPG~~df~-------------~~~~~~l~~aD~ailVv-Da~~g~~~qt~~~~~~~~~---~~~p~ilviNK~ 160 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------------SEVTAALRVTDGALVVV-DTIEGVCVQTETVLRQALG---ERIKPVVVINKV 160 (842)
T ss_dssp EEEEEECCCCCCSSC-------------HHHHHHHHTCSEEEEEE-ETTTBSCHHHHHHHHHHHH---TTCEEEEEEECH
T ss_pred ceEEEEECcCchhhH-------------HHHHHHHHhCCEEEEEE-eCCCCCCHHHHHHHHHHHH---cCCCeEEEEECC
Confidence 568999999976422 35677888888666655 44432 233333444443 457789999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 975
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=80.51 E-value=2.2 Score=39.44 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=42.3
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHH---HHHHHHhhhhcC-CCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEE
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTR---DLIRQMTQTHMS-NPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFV 144 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~---~~i~~Lv~~Yi~-~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGV 144 (294)
.-.++.|||+||..... .... ..+...+...+. .|..++| |+.|.. .+++++.++.+.+...-+=.|
T Consensus 190 ~~yD~VIIDTpg~l~~~-----~~l~~eL~~~~~vi~~~~p~~~d~vll-Vl~a~~---~~~~l~~~~~~~~~~~i~GvV 260 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNK-----TNLMAELEKMNKIIQQVEKSAPHEVLL-VIDATT---GQNGVIQAEEFSKVADVSGII 260 (320)
T ss_dssp TTCSEEEEECCCCGGGH-----HHHHHHHHHHHHHHHTTCTTCCSEEEE-EEEGGG---THHHHHHHHHHTTTSCCCEEE
T ss_pred cCCCEEEEcCCCccccc-----HHHHHHHHHHHHHHhcccCCCCceEEE-EEECCC---cHHHHHHHHHHhhcCCCcEEE
Confidence 35789999999977532 1122 223333443332 3555544 445442 367778888887654334357
Q ss_pred eccchh
Q psy8958 145 LTKVSQ 150 (294)
Q Consensus 145 lTK~D~ 150 (294)
+||.|.
T Consensus 261 ltk~d~ 266 (320)
T 1zu4_A 261 LTKMDS 266 (320)
T ss_dssp EECGGG
T ss_pred EeCCCC
Confidence 899984
No 179
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=79.54 E-value=1.4 Score=42.89 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHH-HHHhhhhcCCCCceEEEeccCCCcch--hcHHHHhhhhcCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLI-RQMTQTHMSNPNAIILCIQDGSVDAE--RSNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i-~~Lv~~Yi~~p~sIILaV~~a~~D~a--ns~al~lar~~DP~G~RTIGVlTK 147 (294)
..++|+|+||+.... +..+.+ -.....|+...+.+++ |++++..+. ....++..+. ...|.|+||
T Consensus 272 ~~v~liDT~G~~~~~------~~ve~~gi~~~~~~~~~aD~vl~-VvD~s~~~~~~~~~i~~~l~~-----~piivV~NK 339 (462)
T 3geh_A 272 IPVQVLDTAGIRETS------DQVEKIGVERSRQAANTADLVLL-TIDAATGWTTGDQEIYEQVKH-----RPLILVMNK 339 (462)
T ss_dssp EEEEECC--------------------------CCCCSCSEEEE-EEETTTCSCHHHHHHHHHHTT-----SCEEEEEEC
T ss_pred EEEEEEECCccccch------hHHHHHHHHHHhhhhhcCCEEEE-EeccCCCCCHHHHHHHHhccC-----CcEEEEEEC
Confidence 458999999985421 111111 1234567777775555 555543322 2233333322 478999999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 340 ~Dl~ 343 (462)
T 3geh_A 340 IDLV 343 (462)
T ss_dssp TTSS
T ss_pred CCCC
Confidence 9964
No 180
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=79.32 E-value=1.3 Score=44.60 Aligned_cols=69 Identities=9% Similarity=-0.011 Sum_probs=43.5
Q ss_pred CCcchhhhhhhhhhhccCCCCCC-Ccc-chhhhHHHHHHHHHhhhhh---cC-CChHHHHHHHcCCcccCCCCCe
Q psy8958 179 GKHTIFVLTKVSQQVSMSPPLSP-SGQ-KHRLIKSFIVCLQVDLAEE---NH-SDPQRIKKILAGKLFPMKALGY 247 (294)
Q Consensus 179 ~~~t~~~r~~~E~~fF~~~pW~~-~~~-~~r~~~a~~~~~~~d~~~~---~~-~~~~~~~~il~~~~~~L~~lG~ 247 (294)
+..+..++.+.|+.||.++||.. +.. .+-++.+|+..|+.=|++. .+ ....++.+.|......|++||-
T Consensus 263 ~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~~i~~~l~~~~~el~~lg~ 337 (608)
T 3szr_A 263 DQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLENQIKETHQRITEELQKYGV 337 (608)
T ss_dssp TCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45678899999999999999954 433 3555677776655544432 11 1234566667777777777775
No 181
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=79.29 E-value=1.1 Score=44.49 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=44.7
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHH---HHHHhhhhc-CCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEec
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDL---IRQMTQTHM-SNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~---i~~Lv~~Yi-~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlT 146 (294)
.++.|||++|..+.. ...... +..+++..+ ..|..++|++-+ . ..+.++.+++.+...-.-|..|+|
T Consensus 376 ~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDa-t---tGq~al~~ak~f~~~~~itgvIlT 446 (503)
T 2yhs_A 376 IDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDA-S---TGQNAVSQAKLFHEAVGLTGITLT 446 (503)
T ss_dssp CSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEG-G---GTHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecC-c---ccHHHHHHHHHHHhhcCCCEEEEE
Confidence 478999999986432 222333 333344443 347667665543 3 236777888887665557889999
Q ss_pred cchh
Q psy8958 147 KVSQ 150 (294)
Q Consensus 147 K~D~ 150 (294)
|+|-
T Consensus 447 KLD~ 450 (503)
T 2yhs_A 447 KLDG 450 (503)
T ss_dssp CGGG
T ss_pred cCCC
Confidence 9983
No 182
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.15 E-value=1.1 Score=41.18 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=45.9
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
.++.++|++|..+... ..+.++..+-..+.+..+.+|.-++| |.++.. .++++..++.+......|+-|+||.|
T Consensus 185 ~d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~~lL-vLDa~t---~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKEVWL-VLDAVT---GQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp CSEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSEEEE-EEETTB---CTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred CCEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCeEEE-EEcHHH---HHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4577999999865321 12334444444556667777886666 555442 25566666666443346999999987
No 183
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=77.89 E-value=0.76 Score=44.97 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=43.5
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
...++++|+||.-.. ..+...|+++.+ +++.|++++..-.....+...+...+. .-.|-|.||.|
T Consensus 97 ~~~~~i~Dt~G~e~~-------------~~~~~~~l~~~d-~ii~V~D~s~~~~~~~~~~~l~~~~~~-~pvilV~NK~D 161 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIM-------------HASHQFFMTRSS-VYMLLLDSRTDSNKHYWLRHIEKYGGK-SPVIVVMNKID 161 (535)
T ss_dssp TCEEEEECCCSCCTT-------------TTTCHHHHHSSE-EEEEEECGGGGGGHHHHHHHHHHHSSS-CCEEEEECCTT
T ss_pred eEEEEEEECCcHHHH-------------HHHHHHHccCCc-EEEEEEeCCCchhHHHHHHHHHHhCCC-CCEEEEEECCC
Confidence 456999999993221 123445666665 555566666544445556667776653 67899999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 162 l~ 163 (535)
T 3dpu_A 162 EN 163 (535)
T ss_dssp TC
T ss_pred cc
Confidence 63
No 184
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=77.83 E-value=3.8 Score=39.45 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=39.1
Q ss_pred CCceEEeCCCCcccCCCC-CChhHHHHHHHHhhh-----------hcCCCC--ceEEEeccCCCcchhcHHHHhhhhcCC
Q psy8958 71 QRMVLVDLPGIISTSTQD-MASDTRDLIRQMTQT-----------HMSNPN--AIILCIQDGSVDAERSNVTDLVSQMDP 136 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~-q~~~~~~~i~~Lv~~-----------Yi~~p~--sIILaV~~a~~D~ans~al~lar~~DP 136 (294)
++|+++|+||+-...... .-..+.+.+.+.... |+..++ ++++.+.|....+...+ ..+.+.+..
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d-~~~lk~L~~ 166 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD-IEFMKRLHE 166 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH-HHHHHHHTT
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH-HHHHHHHhc
Confidence 589999999987543211 112333334444444 445566 35566666422233222 234445544
Q ss_pred CCCeEEEEeccchhh
Q psy8958 137 QGKRTIFVLTKVSQQ 151 (294)
Q Consensus 137 ~G~RTIGVlTK~D~~ 151 (294)
+.-.|-|++|+|+.
T Consensus 167 -~v~iIlVinK~Dll 180 (418)
T 2qag_C 167 -KVNIIPLIAKADTL 180 (418)
T ss_dssp -TSEEEEEEESTTSS
T ss_pred -cCcEEEEEEcccCc
Confidence 67899999999964
No 185
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=77.73 E-value=2.2 Score=41.22 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=41.6
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
-.++.|||+||..... ......+..+ .++..|..++|+| +|.. .+++...++.+++.-.-+-.|+||.|
T Consensus 183 ~~D~VIIDTpG~l~~~-----~~l~~~L~~~--~~~~~p~~vllVv-da~~---g~~~~~~~~~f~~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVD-----EAMMDEIKQV--HASINPVETLFVV-DAMT---GQDAANTAKAFNEALPLTGVVLTKVD 251 (433)
T ss_dssp TCSEEEEECCCCCTTC-----HHHHHHHHHH--HHHSCCSEEEEEE-ETTB---CTTHHHHHHHHHHHSCCCCEEEECTT
T ss_pred CCCEEEEECCCccccc-----HHHHHHHHHH--HHhhcCcceeEEe-ecch---hHHHHHHHHHHhccCCCeEEEEecCC
Confidence 4689999999965421 2222222222 3344677666644 4442 36677778877653232445999998
Q ss_pred h
Q psy8958 150 Q 150 (294)
Q Consensus 150 ~ 150 (294)
.
T Consensus 252 ~ 252 (433)
T 2xxa_A 252 G 252 (433)
T ss_dssp S
T ss_pred C
Confidence 4
No 186
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=74.01 E-value=1.1 Score=42.76 Aligned_cols=76 Identities=14% Similarity=0.316 Sum_probs=37.1
Q ss_pred CceEEeCCCCcccCCCC-CChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 72 RMVLVDLPGIISTSTQD-MASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~-q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
++.++|+||+.+..... |..+..... -+..|+...+.+++ |.++......++ .+++..+...|.-.|.|++|+|+
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~--~~~~~i~~ad~vll-v~d~~~~~~~~~-~~i~~~l~~~~~~~ilv~NK~Dl 304 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNY--RVVDSIEKADVVVI-VLDATQGITRQD-QRMAGLMERRGRASVVVFNKWDL 304 (439)
T ss_dssp EEEESSCSCC-----------CCSCCH--HHHHHHHHCSEEEE-EEETTTCCCHHH-HHHHHHHHHTTCEEEEEEECGGG
T ss_pred EEEEEECCCCccccccchhhHHHHHHH--HHHHHHhhCCEEEE-EEeCCCCCCHHH-HHHHHHHHHcCCCEEEEEECccC
Confidence 58899999985432211 100000000 12345666665554 445443332222 23334344457889999999996
Q ss_pred h
Q psy8958 151 Q 151 (294)
Q Consensus 151 ~ 151 (294)
.
T Consensus 305 ~ 305 (439)
T 1mky_A 305 V 305 (439)
T ss_dssp S
T ss_pred C
Confidence 3
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=73.66 E-value=0.61 Score=46.83 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=32.5
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC---------cchhc
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV---------DAERS 125 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~---------D~ans 125 (294)
+++-+.....+..++ ..++|+|+||..... .++..|+.....+||+| +|+. ...+.
T Consensus 240 GiTid~~~~~~~~~~-~~i~iiDTPGh~~f~-------------~~~~~~~~~aD~alLVV-Da~~g~~e~gi~~~~qt~ 304 (592)
T 3mca_A 240 GVTMDVASTTFESDK-KIYEIGDAPGHRDFI-------------SGMIAGASSADFAVLVV-DSSQNNFERGFLENGQTR 304 (592)
T ss_dssp --------------------CCEEESSSEEE-------------EECCC-------CCSEE-EEEECCSSTTSCSCSSHH
T ss_pred CeeEEeeEEEEEeCC-eEEEEEECCChHHHH-------------HHHHHHHhhCCEEEEEE-ECCCCccccccccchHHH
Confidence 444444444444443 579999999975421 12334556666555555 4442 23445
Q ss_pred HHHHhhhhcCCCCC-eEEEEeccchhh
Q psy8958 126 NVTDLVSQMDPQGK-RTIFVLTKVSQQ 151 (294)
Q Consensus 126 ~al~lar~~DP~G~-RTIGVlTK~D~~ 151 (294)
+.+.+++.. |. +.|.|+||+|+.
T Consensus 305 e~l~~~~~l---gip~iIvviNKiDl~ 328 (592)
T 3mca_A 305 EHAYLLRAL---GISEIVVSVNKLDLM 328 (592)
T ss_dssp HHHHHHHHS---SCCCEEEEEECGGGG
T ss_pred HHHHHHHHc---CCCeEEEEEeccccc
Confidence 556666665 34 488899999964
No 188
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=73.12 E-value=7.8 Score=42.69 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=42.2
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhcHHHHhhhhcCCCCCe-EEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERSNVTDLVSQMDPQGKR-TIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans~al~lar~~DP~G~R-TIGVlTK 147 (294)
-..++|+|+||... ...++..|++..+.+||+|-..+-. ..+.+.+.+++.. |.. -|.|+||
T Consensus 358 ~~kI~IIDTPGHed-------------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l---gIP~IIVVINK 421 (1289)
T 3avx_A 358 TRHYAHVDCPGHAD-------------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV---GVPYIIVFLNK 421 (1289)
T ss_dssp SCEEEEEECCCHHH-------------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH---TCSCEEEEEEC
T ss_pred CEEEEEEECCChHH-------------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc---CCCeEEEEEee
Confidence 35799999999532 2345566888888776665443321 2234455666654 444 5889999
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
+|+.
T Consensus 422 iDLv 425 (1289)
T 3avx_A 422 CDMV 425 (1289)
T ss_dssp CTTC
T ss_pred cccc
Confidence 9963
No 189
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=72.61 E-value=9 Score=34.76 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=37.8
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
.-+++.|+|+||+.... ......+..++.. ..+..+ +.|+++..+ .+++.++++.+..- .-+--|+||.
T Consensus 181 ~~~dlvIiDT~G~~~~~-----~~~~~el~~~l~~--~~~~~~-~lVl~at~~--~~~~~~~~~~~~~l-~~~giVltk~ 249 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKD-----PQYIDELKETIPF--ESSIQS-FLVLSATAK--YEDMKHIVKRFSSV-PVNQYIFTKI 249 (296)
T ss_dssp GGSSEEEEECCCCCTTS-----HHHHHHHHHHSCC--CTTEEE-EEEEETTBC--HHHHHHHTTTTSSS-CCCEEEEECT
T ss_pred cCCCEEEEeCCCCChhh-----HHHHHHHHHHHhh--cCCCeE-EEEEECCCC--HHHHHHHHHHHhcC-CCCEEEEeCC
Confidence 45789999999986421 2222222233210 124443 445555543 24555667766532 2344578998
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|.
T Consensus 250 D~ 251 (296)
T 2px0_A 250 DE 251 (296)
T ss_dssp TT
T ss_pred Cc
Confidence 84
No 190
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=71.98 E-value=4.3 Score=38.00 Aligned_cols=74 Identities=9% Similarity=0.034 Sum_probs=34.2
Q ss_pred CceEEeCCCCcccCCCCCChhH-HHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 72 RMVLVDLPGIISTSTQDMASDT-RDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~-~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
+++|||+||+....... ..+ .+.+..++.. +....++. ++.++..+--. .+.....+...+...+.|++|.|.
T Consensus 213 ~~~liDtPG~~~~~~~~--~~l~~~~l~~~~~~--~~i~~~~~-~l~~~~~~~~g-~l~~l~~l~~~~~~~~~v~~k~d~ 286 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMA--HFVDARDLKIITPK--REIHPRVY-QLNEGQTLFFG-GLARLDYIKGGRRSFVCYMANELT 286 (369)
T ss_dssp TCEEEECCSCCCCSSGG--GGSCTTTHHHHSCS--SCCCCEEE-EECTTEEEEET-TTEEEEEEESSSEEEEEEECTTSC
T ss_pred CeEEEeCCCcCcHHHHH--HHHhHHHHHHHhcc--cccCceEE-EEcCCceEEEC-CEEEEEEccCCCceEEEEecCCcc
Confidence 59999999998643111 111 1111111110 33444444 44443211100 111122222345678999999995
Q ss_pred h
Q psy8958 151 Q 151 (294)
Q Consensus 151 ~ 151 (294)
.
T Consensus 287 ~ 287 (369)
T 3ec1_A 287 V 287 (369)
T ss_dssp E
T ss_pred c
Confidence 3
No 191
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=70.07 E-value=7.1 Score=35.30 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=40.9
Q ss_pred CCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 69 GLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 69 ~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
.-+++.|||.||.... .......+..+.... .|..++| |+++.. .+++++.++.+.+.-.-+=-|+||.
T Consensus 179 ~~~D~viiDtpp~~~~-----d~~~~~~l~~~~~~~--~~~~~~l-v~~~~~---~~~~~~~~~~~~~~~~i~givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQI-----DEPLMGELARLKEVL--GPDEVLL-VLDAMT---GQEALSVARAFDEKVGVTGLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSC-----CHHHHHHHHHHHHHH--CCSEEEE-EEEGGG---THHHHHHHHHHHHHTCCCEEEEECG
T ss_pred CCCCEEEEeCCCCccc-----cHHHHHHHHHHhhhc--CCCEEEE-EEeCCC---cHHHHHHHHHHhhcCCCCEEEEECC
Confidence 3578999999986643 123344444443322 3665654 444442 3667777777665322233478999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|.
T Consensus 248 d~ 249 (295)
T 1ls1_A 248 DG 249 (295)
T ss_dssp GG
T ss_pred CC
Confidence 84
No 192
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=69.86 E-value=5.4 Score=32.45 Aligned_cols=67 Identities=9% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chhc-HHHHhhhhc---CCCCCeEEEE
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AERS-NVTDLVSQM---DPQGKRTIFV 144 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~ans-~al~lar~~---DP~G~RTIGV 144 (294)
...|.|+|+||..... .+ ..|++..+.+|+++...+.+ +.+. ..+...+.. ...+.-.|-|
T Consensus 68 ~~~l~i~Dt~G~~~~~-------------~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv 133 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPR-------------NC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLL 133 (187)
T ss_dssp EEEEEEEECCC---CC-------------CT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_pred EEEEEEEECCCCCcch-------------hH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 3578999999954211 11 35888888777665544321 1111 122222222 1235678999
Q ss_pred eccchh
Q psy8958 145 LTKVSQ 150 (294)
Q Consensus 145 lTK~D~ 150 (294)
.||+|+
T Consensus 134 ~nK~Dl 139 (187)
T 3c5c_A 134 GNKLDM 139 (187)
T ss_dssp EECGGG
T ss_pred EECcch
Confidence 999996
No 193
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=69.36 E-value=5.8 Score=39.34 Aligned_cols=76 Identities=18% Similarity=0.364 Sum_probs=47.4
Q ss_pred cccccceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC--CcchhcHHHHhhh
Q psy8958 55 TVSNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS--VDAERSNVTDLVS 132 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~--~D~ans~al~lar 132 (294)
++...++.++-.+ ..+.|||+||-..... +..+.| +--.+.|| |++|. +...+..+++.|+
T Consensus 87 TI~s~~~~~~~~~---~~iNlIDTPGHvDF~~--------Ev~raL-----~~~DgAvl-Vvda~~GV~~qT~~v~~~a~ 149 (548)
T 3vqt_A 87 SVTTSVMQFPYRD---RVVNLLDTPGHQDFSE--------DTYRVL-----TAVDSALV-VIDAAKGVEAQTRKLMDVCR 149 (548)
T ss_dssp -CTTTEEEEEETT---EEEEEECCCCGGGCSH--------HHHHHH-----HSCSEEEE-EEETTTBSCHHHHHHHHHHH
T ss_pred cEeeceEEEEECC---EEEEEEeCCCcHHHHH--------HHHHHH-----HhcCceEE-EeecCCCcccccHHHHHHHH
Confidence 3456666665543 4689999999875442 222322 22333433 44444 4555667778887
Q ss_pred hcCCCCCeEEEEeccchh
Q psy8958 133 QMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 133 ~~DP~G~RTIGVlTK~D~ 150 (294)
+. +-..|.+|+|.|.
T Consensus 150 ~~---~lp~i~fINK~Dr 164 (548)
T 3vqt_A 150 MR---ATPVMTFVNKMDR 164 (548)
T ss_dssp HT---TCCEEEEEECTTS
T ss_pred Hh---CCceEEEEecccc
Confidence 76 6789999999995
No 194
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=68.07 E-value=7 Score=34.96 Aligned_cols=79 Identities=10% Similarity=0.192 Sum_probs=40.4
Q ss_pred CCceEEeCCCCcccCCCCCC-hhHHHHHHHHhhh----hcCC----------CCceEEEeccCCCcchhcHHHHhhhhcC
Q psy8958 71 QRMVLVDLPGIISTSTQDMA-SDTRDLIRQMTQT----HMSN----------PNAIILCIQDGSVDAERSNVTDLVSQMD 135 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~-~~~~~~i~~Lv~~----Yi~~----------p~sIILaV~~a~~D~ans~al~lar~~D 135 (294)
++||++|.||+-......+. +.+.+.+..-... .++. -.+.++.+-+...-+...+ .++.+.+.
T Consensus 60 ~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~ 138 (270)
T 3sop_A 60 MKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS 138 (270)
T ss_dssp CEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH
T ss_pred CCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH
Confidence 57999999999765433221 2222322222222 2111 1444555554433333333 44555554
Q ss_pred CCCCeEEEEeccchhh
Q psy8958 136 PQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 136 P~G~RTIGVlTK~D~~ 151 (294)
.. .-.|-|+||.|+.
T Consensus 139 ~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 139 KV-VNIIPVIAKADTM 153 (270)
T ss_dssp TT-SEEEEEETTGGGS
T ss_pred hc-CcEEEEEeccccC
Confidence 44 7789999999964
No 195
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=65.69 E-value=9.8 Score=35.57 Aligned_cols=74 Identities=11% Similarity=0.092 Sum_probs=34.2
Q ss_pred CceEEeCCCCcccCCCCCChhH-HHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 72 RMVLVDLPGIISTSTQDMASDT-RDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~-~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
.++|||+||+.....- .+.+ .+.+..++. .+....++..+.+...-+.. .+.....+...+...+.|+||.|.
T Consensus 212 ~~~liDtPG~~~~~~~--~~~l~~~~l~~~~~--~~~i~~~~~~l~~~~~~~~g--~l~~~d~l~~~~~~~~~v~nk~d~ 285 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQM--AHYVGKQSLKLITP--TKEIKPMVFQLNEEQTLFFS--GLARFDYVSGGRRAFTCHFSNRLT 285 (368)
T ss_dssp SCEEEECCCBCCTTSG--GGGSCHHHHHHHSC--SSCCCCEEEEECTTEEEEET--TTEEEEEEESSSEEEEEEECTTSC
T ss_pred CeEEEeCCCcCcHHHH--HHHhhHHHHHHhcc--ccccCceEEEEcCCCEEEEc--ceEEEEEecCCCceEEEEecCccc
Confidence 4899999999764311 1111 122222211 13344444444442211111 111111222235667999999995
Q ss_pred h
Q psy8958 151 Q 151 (294)
Q Consensus 151 ~ 151 (294)
.
T Consensus 286 ~ 286 (368)
T 3h2y_A 286 I 286 (368)
T ss_dssp E
T ss_pred c
Confidence 3
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=65.62 E-value=8.5 Score=39.20 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=48.2
Q ss_pred cccccceEEEEeCCCC----CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC--CcchhcHHH
Q psy8958 55 TVSNEVISMSVKGPGL----QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS--VDAERSNVT 128 (294)
Q Consensus 55 ~~S~~~I~leI~gP~~----p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~--~D~ans~al 128 (294)
++...++.+.-.+.+. .-+.|||+||-.... .+..+.|-- -... |.|++|. +-..+..++
T Consensus 65 TI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~--------~Ev~~aLr~-----~Dga-vlvVDaveGV~~qT~~v~ 130 (709)
T 4fn5_A 65 TITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFT--------IEVERSLRV-----LDGA-VVVFCGTSGVEPQSETVW 130 (709)
T ss_dssp ---CCEEEEEECCTTSCSCCEEEEEECCCSCTTCH--------HHHHHHHHH-----CSEE-EEEEETTTCSCHHHHHHH
T ss_pred eEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccH--------HHHHHHHHH-----hCeE-EEEEECCCCCchhHHHHH
Confidence 4556778887776543 358999999976432 222222211 1223 3444444 445566677
Q ss_pred HhhhhcCCCCCeEEEEeccchh
Q psy8958 129 DLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 129 ~lar~~DP~G~RTIGVlTK~D~ 150 (294)
+.|.+. |-..|.||+|.|.
T Consensus 131 ~~a~~~---~lp~i~~iNKiDr 149 (709)
T 4fn5_A 131 RQANKY---GVPRIVYVNKMDR 149 (709)
T ss_dssp HHHHHH---TCCEEEEEECSSS
T ss_pred HHHHHc---CCCeEEEEccccc
Confidence 777776 6889999999995
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=64.79 E-value=3.8 Score=37.87 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
-.++.|||+||+.. +.. ..+.....+|+++-+...| ..+....... ..-.|.|++|.|
T Consensus 171 ~~~~iiiDTpGi~~------~~~----------~~~~~aD~vl~V~d~~~~~-~~~~l~~~~~-----~~p~ivVlNK~D 228 (355)
T 3p32_A 171 GFDVILIETVGVGQ------SEV----------AVANMVDTFVLLTLARTGD-QLQGIKKGVL-----ELADIVVVNKAD 228 (355)
T ss_dssp TCCEEEEEECSCSS------HHH----------HHHTTCSEEEEEEESSTTC-TTTTCCTTSG-----GGCSEEEEECCC
T ss_pred CCCEEEEeCCCCCc------HHH----------HHHHhCCEEEEEECCCCCc-cHHHHHHhHh-----hcCCEEEEECCC
Confidence 36899999999643 211 1135566555555443322 1111111111 124599999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 229 l~ 230 (355)
T 3p32_A 229 GE 230 (355)
T ss_dssp GG
T ss_pred Cc
Confidence 64
No 198
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=64.43 E-value=5.9 Score=32.65 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=38.5
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCC-CCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDP-QGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP-~G~RTIGVlTK 147 (294)
..|.++|+||..... ..|...|++..+.+|+++-..+.+ +.+ ...+...+...+ .+.-.|.|.||
T Consensus 72 ~~l~i~Dt~g~~~~~------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAG------------GWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGGG------------HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccch------------hhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 467888999964311 125566777777766655433221 111 122233333322 45778999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 140 ~Dl 142 (195)
T 3cbq_A 140 SDL 142 (195)
T ss_dssp TTC
T ss_pred hhc
Confidence 995
No 199
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=63.66 E-value=8.8 Score=38.87 Aligned_cols=66 Identities=17% Similarity=0.282 Sum_probs=44.6
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC-CcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS-VDAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~-~D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
-..+.|+|+||.... ...+..|++.-+..||++-+.+ .+..+...++.++.. |...|-|++|+
T Consensus 73 ~~~~nliDTpG~~~f-------------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~ip~ilv~NKi 136 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDF-------------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL---GLPRMVVVTKL 136 (665)
T ss_dssp TEEEEEEECCCSGGG-------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEECG
T ss_pred CEEEEEEeCCCccch-------------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc---cCCEEEEecCC
Confidence 356899999996431 2456667777776666655332 345556666777663 67889999999
Q ss_pred hhh
Q psy8958 149 SQQ 151 (294)
Q Consensus 149 D~~ 151 (294)
|+.
T Consensus 137 D~~ 139 (665)
T 2dy1_A 137 DKG 139 (665)
T ss_dssp GGC
T ss_pred chh
Confidence 964
No 200
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=62.94 E-value=8.3 Score=35.69 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=42.5
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
.++.++|++|..+... .....+..+.+-.. |.-.+++ .++.. .++++..++.+...-.-|+-|+||.|-
T Consensus 212 ~d~vliDtaG~~~~~~-----~l~~eL~~i~ral~--~de~llv-LDa~t---~~~~~~~~~~~~~~~~it~iilTKlD~ 280 (328)
T 3e70_C 212 IDVVLIDTAGRSETNR-----NLMDEMKKIARVTK--PNLVIFV-GDALA---GNAIVEQARQFNEAVKIDGIILTKLDA 280 (328)
T ss_dssp CSEEEEEECCSCCTTT-----CHHHHHHHHHHHHC--CSEEEEE-EEGGG---TTHHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred chhhHHhhccchhHHH-----HHHHHHHHHHHHhc--CCCCEEE-EecHH---HHHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence 4577899999865332 23344444333322 4444443 33332 378888888887665678999999983
No 201
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=62.47 E-value=4.5 Score=32.98 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=37.9
Q ss_pred EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhc-CCCC
Q psy8958 62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQM-DPQG 138 (294)
Q Consensus 62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~-DP~G 138 (294)
.+.+.+. ...|.|+|+||..... |++..+.+|+++-..+.+ +.+ ...+...+.. +..+
T Consensus 59 ~~~~~~~-~~~l~i~Dt~G~~~~~------------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 119 (184)
T 3ihw_A 59 EIVVDGQ-SYLLLIRDEGGPPELQ------------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE 119 (184)
T ss_dssp EEEETTE-EEEEEEEECSSSCCHH------------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGG
T ss_pred EEEECCE-EEEEEEEECCCChhhh------------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444332 3468889999953211 666667666555433321 122 2233333333 2234
Q ss_pred CeEEEEeccchh
Q psy8958 139 KRTIFVLTKVSQ 150 (294)
Q Consensus 139 ~RTIGVlTK~D~ 150 (294)
.-.|.|.||.|+
T Consensus 120 ~piilv~nK~Dl 131 (184)
T 3ihw_A 120 VPMVLVGTQDAI 131 (184)
T ss_dssp SCEEEEEECTTC
T ss_pred CCEEEEEECccc
Confidence 668899999995
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=60.78 E-value=8.9 Score=34.65 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=41.8
Q ss_pred eEEEEeCCC-CCCceEEeCCCCcccCCC-CCChhHHHHHHHHhhhhcCCCC-------------ceEEEeccCC--Ccch
Q psy8958 61 ISMSVKGPG-LQRMVLVDLPGIISTSTQ-DMASDTRDLIRQMTQTHMSNPN-------------AIILCIQDGS--VDAE 123 (294)
Q Consensus 61 I~leI~gP~-~p~LTLVDLPGi~~~~~~-~q~~~~~~~i~~Lv~~Yi~~p~-------------sIILaV~~a~--~D~a 123 (294)
+.+.+..++ .+.|+++|+||+...... ..-..+...+.+....|+..-. ++++.+.|.. -|..
T Consensus 65 ~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 65 STVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPL 144 (301)
T ss_dssp CEEEEC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHH
T ss_pred EEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHH
Confidence 334443333 468999999998533211 1112233334444445554321 2566666633 3443
Q ss_pred hcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 124 RSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 124 ns~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
. .++.+++.+ ..-.+.|++|.|+.
T Consensus 145 ~---~~~l~~l~~-~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 145 D---VAFMKAIHN-KVNIVPVIAKADTL 168 (301)
T ss_dssp H---HHHHHHHTT-TSCEEEEECCGGGS
T ss_pred H---HHHHHHHHh-cCCEEEEEEeCCCC
Confidence 3 355566554 34588999999964
No 203
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=57.36 E-value=6 Score=32.39 Aligned_cols=74 Identities=15% Similarity=0.098 Sum_probs=41.5
Q ss_pred EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCCCC
Q psy8958 62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDPQG 138 (294)
Q Consensus 62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP~G 138 (294)
.+.+.|.. ..+.|+|+||.... +.+...|.+....+|++ .+......-. ..+...+.....+
T Consensus 46 ~i~~~g~~-~~~~i~Dt~g~~~~-------------~~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~~~~~~~~~~~~ 110 (199)
T 2f9l_A 46 SIQVDGKT-IKAQIWDTAGQERY-------------RRITSAYYRGAVGALLV-YDIAKHLTYENVERWLKELRDHADSN 110 (199)
T ss_dssp EEEETTEE-EEEEEEECSSGGGT-------------TCCCHHHHTTCSEEEEE-EETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred EEEECCEE-EEEEEEECCCchhh-------------hhhhHHHHhcCCEEEEE-EECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 34444422 35788999995432 23455666766655544 4444322111 2233334444456
Q ss_pred CeEEEEeccchh
Q psy8958 139 KRTIFVLTKVSQ 150 (294)
Q Consensus 139 ~RTIGVlTK~D~ 150 (294)
.+.+-|++|+|+
T Consensus 111 ~~i~~v~nK~Dl 122 (199)
T 2f9l_A 111 IVIMLVGNKSDL 122 (199)
T ss_dssp CEEEEEEECTTC
T ss_pred CeEEEEEECccc
Confidence 889999999995
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=55.82 E-value=6.4 Score=39.68 Aligned_cols=63 Identities=22% Similarity=0.414 Sum_probs=39.6
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC--CcchhcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS--VDAERSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~--~D~ans~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..++|||+||-... ..+..+.| +--... +.|++|. +-..+..++++|++. |-..|.+|+|.
T Consensus 67 ~~iNlIDTPGH~DF--------~~Ev~raL-----~~~Dga-vlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKm 129 (638)
T 3j25_A 67 TKVNIIDTPGHMDF--------LAEVYRSL-----SVLDGA-ILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKI 129 (638)
T ss_dssp CBCCCEECCCSSST--------HHHHHHHH-----TTCSEE-ECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEEC
T ss_pred EEEEEEECCCcHHH--------HHHHHHHH-----HHhCEE-EEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecc
Confidence 45899999997642 23333333 223333 3444554 344566677777776 56789999999
Q ss_pred hh
Q psy8958 149 SQ 150 (294)
Q Consensus 149 D~ 150 (294)
|.
T Consensus 130 Dr 131 (638)
T 3j25_A 130 DQ 131 (638)
T ss_dssp CS
T ss_pred cc
Confidence 95
No 205
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=53.22 E-value=7.2 Score=37.00 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=17.8
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~ 120 (294)
.+.|+|+||+...+..+ . .+.+-...|++.-..|++ |+++..
T Consensus 72 ~i~lvDtpG~~~~a~~~--~----~l~~~~l~~i~~aD~il~-VvD~~~ 113 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAHEG--R----GLGNKFLDDLRMASALIH-VVDATG 113 (397)
T ss_dssp EEEEEECC---------------------CCCSSTTCSEEEE-EEETTC
T ss_pred EEEEEECCCcccchhhh--h----hHHHHHHHHHhcCCEEEE-EEeccc
Confidence 49999999998643321 1 111222356677775555 555544
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=48.88 E-value=13 Score=35.22 Aligned_cols=84 Identities=13% Similarity=0.245 Sum_probs=42.2
Q ss_pred cceEEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHH-hhhhcCC-
Q psy8958 59 EVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTD-LVSQMDP- 136 (294)
Q Consensus 59 ~~I~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~-lar~~DP- 136 (294)
+|+.=.+.-++ ..++|+|+|||+..+..+ .....++-+. +++-. +||.|++++..+..-+.+. -...++.
T Consensus 108 ~~~~g~~~~~~-~~i~l~D~pGl~~~a~~~--~~~g~~~l~~----i~~ad-~il~vvD~~~p~~~~~~i~~EL~~~~~~ 179 (376)
T 4a9a_A 108 VTVPGVIRYKG-AKIQMLDLPGIIDGAKDG--RGRGKQVIAV----ARTCN-LLFIILDVNKPLHHKQIIEKELEGVGIR 179 (376)
T ss_dssp CEEEEEEEETT-EEEEEEECGGGCCC-------CHHHHHHHH----HHHCS-EEEEEEETTSHHHHHHHHHHHHHHTTEE
T ss_pred eeeeEEEEeCC-cEEEEEeCCCccCCchhh--hHHHHHHHHH----HHhcC-ccccccccCccHHHHHHHHHHHHHhhHh
Confidence 34433333333 358999999999876543 2233333333 33344 7788888875444333321 1122221
Q ss_pred -CCCeEEEEeccchh
Q psy8958 137 -QGKRTIFVLTKVSQ 150 (294)
Q Consensus 137 -~G~RTIGVlTK~D~ 150 (294)
...+.+-|+.|.|.
T Consensus 180 l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 180 LNKTPPDILIKKKEK 194 (376)
T ss_dssp ETCCCCCEEEEECSS
T ss_pred hccCChhhhhhHhhh
Confidence 12345678888774
No 207
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=48.24 E-value=16 Score=29.37 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=35.5
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh----cHHHHhhhhcCCCCCeEEEEe
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER----SNVTDLVSQMDPQGKRTIFVL 145 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an----s~al~lar~~DP~G~RTIGVl 145 (294)
...|.++|+||... .+.+...|+.....+|+ |.+.+..... ...+...+...+ +.-.|-|.
T Consensus 55 ~~~~~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~~s~~~~~~~~~~~~~~~~-~~piilv~ 119 (184)
T 2zej_A 55 DLVLNVWDFAGREE-------------FYSTHPHFMTQRALYLA-VYDLSKGQAEVDAMKPWLFNIKARAS-SSPVILVG 119 (184)
T ss_dssp -CEEEEEEECSHHH-------------HHTTSHHHHHHSEEEEE-EEEGGGCHHHHHTHHHHHHHHHHHCT-TCEEEEEE
T ss_pred ceEEEEEecCCCHH-------------HHHhhHHHccCCcEEEE-EEeCCcchhHHHHHHHHHHHHHhhCC-CCcEEEEE
Confidence 45789999999432 23455567766555544 5444432111 112222333333 35667777
Q ss_pred ccchh
Q psy8958 146 TKVSQ 150 (294)
Q Consensus 146 TK~D~ 150 (294)
||+|+
T Consensus 120 nK~Dl 124 (184)
T 2zej_A 120 THLDV 124 (184)
T ss_dssp ECGGG
T ss_pred ECCCc
Confidence 99995
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=48.17 E-value=13 Score=35.65 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=40.8
Q ss_pred CCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEec
Q psy8958 67 GPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLT 146 (294)
Q Consensus 67 gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlT 146 (294)
.+..++++++|+||+.... ....+.++.+- +..-..+ +. .++.. . ...-+.+|+.+-..|.+.+.|+|
T Consensus 116 ~~~~~~ltv~D~~g~~~~~-----~~~~~~L~~~~---L~~~~~~-~~-lS~G~-~-~kqrv~la~aL~~~~~p~~lV~t 183 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGSTN-----FPPDTYLEKMK---FYEYDFF-II-ISATR-F-KKNDIDIAKAISMMKKEFYFVRT 183 (413)
T ss_dssp CSSCTTEEEEECCCGGGSS-----CCHHHHHHHTT---GGGCSEE-EE-EESSC-C-CHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccCCeeehHhhcccchH-----HHHHHHHHHcC---CCccCCe-EE-eCCCC-c-cHHHHHHHHHHHhcCCCeEEEEe
Confidence 3556799999999986421 11222222221 1221222 23 44431 1 23334466665556889999999
Q ss_pred cchhh
Q psy8958 147 KVSQQ 151 (294)
Q Consensus 147 K~D~~ 151 (294)
|||..
T Consensus 184 kpdll 188 (413)
T 1tq4_A 184 KVDSD 188 (413)
T ss_dssp CHHHH
T ss_pred cCccc
Confidence 99975
No 209
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=47.92 E-value=60 Score=26.11 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCC--CCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDP--QGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP--~G~RTIGVlTK 147 (294)
..+++|||+|+... ... ..+ +...+.+|+.+.+...+......+++.+++.. .+.+...|+|+
T Consensus 75 ~yD~viiD~~~~~~-------~~~----~~~----l~~ad~viiv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~ 139 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-------VIT----SAA----VMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITR 139 (206)
T ss_dssp TSSEEEEECCSSSS-------HHH----HHH----HHHCSEEEEEECSCTTTHHHHHHHHHHHTTSCGGGCCEEEEEECS
T ss_pred CCCEEEEECCCCCC-------HHH----HHH----HHHCCEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 47899999998541 111 111 11234455555554444223344455554431 12345678899
Q ss_pred ch
Q psy8958 148 VS 149 (294)
Q Consensus 148 ~D 149 (294)
.|
T Consensus 140 ~~ 141 (206)
T 4dzz_A 140 KI 141 (206)
T ss_dssp BC
T ss_pred cC
Confidence 76
No 210
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=45.05 E-value=26 Score=28.45 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=41.0
Q ss_pred EEEEeCCCCCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--chhc-HHHHhhhhcCCCC
Q psy8958 62 SMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--AERS-NVTDLVSQMDPQG 138 (294)
Q Consensus 62 ~leI~gP~~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--~ans-~al~lar~~DP~G 138 (294)
.+.+.|.. ..+.+.|+||..+.. .++..|.+....+|+ |.+.... +.+. ..++..++.....
T Consensus 70 ~i~~~g~~-~~~~i~Dt~g~~~~~-------------~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~~~~~~~~~~~~~ 134 (191)
T 1oix_A 70 SIQVDGKT-IKAQIWDTAGLERYR-------------AITSAYYRGAVGALL-VYDIAKHLTYENVERWLKELRDHADSN 134 (191)
T ss_dssp EEEETTEE-EEEEEEEECSCCSSS-------------CCCHHHHTTCCEEEE-EEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred EEEECCEE-EEEEEEECCCCcchh-------------hhhHHHhhcCCEEEE-EEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 44444432 246779999975422 245566666665554 4443321 1111 1233334444456
Q ss_pred CeEEEEeccchh
Q psy8958 139 KRTIFVLTKVSQ 150 (294)
Q Consensus 139 ~RTIGVlTK~D~ 150 (294)
.+.+-|++|.|+
T Consensus 135 ~~i~~v~nK~Dl 146 (191)
T 1oix_A 135 IVIMLVGNKSDL 146 (191)
T ss_dssp CEEEEEEECGGG
T ss_pred CcEEEEEECccc
Confidence 789999999995
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=43.17 E-value=12 Score=33.77 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=31.6
Q ss_pred HHhhhhcCCCCceEEEeccCCCcchhc---HHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 99 QMTQTHMSNPNAIILCIQDGSVDAERS---NVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 99 ~Lv~~Yi~~p~sIILaV~~a~~D~ans---~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
.|.+.|+++-..+++++-..+.++... ..+..++. .+...|-|+||.|+.
T Consensus 71 ~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~ 123 (302)
T 2yv5_A 71 LLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLL 123 (302)
T ss_dssp EEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC
T ss_pred HHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCC
Confidence 455679999886665554443443333 23334443 567889999999974
No 212
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=42.99 E-value=2.6 Score=38.87 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=11.6
Q ss_pred CCCceEEeCCCCcc
Q psy8958 70 LQRMVLVDLPGIIS 83 (294)
Q Consensus 70 ~p~LTLVDLPGi~~ 83 (294)
-.++.|||+||+..
T Consensus 148 ~~~i~liDTpG~~~ 161 (341)
T 2p67_A 148 GYDVVIVETVGVGQ 161 (341)
T ss_dssp TCSEEEEEEECCTT
T ss_pred CCCEEEEeCCCccc
Confidence 46899999999863
No 213
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=40.11 E-value=11 Score=36.14 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=20.7
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS 119 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~ 119 (294)
.++|+|+||+......+ +.+.+....|++..+.|++ |++|.
T Consensus 87 ~i~lvDtpGl~~~as~~------~glg~~~l~~ir~aD~Il~-VvD~~ 127 (396)
T 2ohf_A 87 FLNVVDIAGLVKGAHNG------QGLGNAFLSHISACDGIFH-LTRAF 127 (396)
T ss_dssp EEEEEECCC-----------------CCHHHHHHHTSSSEEE-EEEC-
T ss_pred ccEEEECCCcccccchh------hHHHHHHHHHHHhcCeEEE-EEecC
Confidence 49999999998755322 1222345677888886655 55655
No 214
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=38.36 E-value=54 Score=27.66 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=39.4
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhc-HHHHhhhh-cCCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERS-NVTDLVSQ-MDPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans-~al~lar~-~DP~G~RTIGVlTK 147 (294)
..|.++|++|... +-+.|...|.+..+++|++..-.+. .+.+. ......++ ..+.+.-.|.|.+|
T Consensus 87 ~~l~~~Dt~g~~~------------~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK 154 (211)
T 2g3y_A 87 ATIILLDMWENKG------------ENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 154 (211)
T ss_dssp EEEEEECCTTTTH------------HHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEEC
T ss_pred eEEEEeecCCCcc------------hhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEC
Confidence 3578899988321 1234667788888877776543332 12221 12222332 23445678999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 155 ~DL 157 (211)
T 2g3y_A 155 SDL 157 (211)
T ss_dssp TTC
T ss_pred hHH
Confidence 996
No 215
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=36.46 E-value=22 Score=33.36 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=41.8
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
+..++|+.|+.+... ..+.++..+-..+.+..+.+|.-++|.+= +.. .+++...++.+.....-|+-|+||.|-
T Consensus 242 d~~lldt~Gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptt---glD~~~~~~~~~~~~g~t~iiiThlD~ 315 (359)
T 2og2_A 242 DVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNT---GLNMLPQAREFNEVVGITGLILTKLDG 315 (359)
T ss_dssp SEEEEECCCCSSCCH-HHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGG---GGGGHHHHHHHHHHTCCCEEEEESCTT
T ss_pred HHHHHHhcCCChhhh-hHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCC---CCCHHHHHHHHHHhcCCeEEEEecCcc
Confidence 467899999864321 11233444444555666777885555443 331 233333444443333478999999873
No 216
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=35.44 E-value=33 Score=32.05 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=40.4
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc--------ch-hcHHHHhhhhc----CC
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD--------AE-RSNVTDLVSQM----DP 136 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D--------~a-ns~al~lar~~----DP 136 (294)
-..|.|+|++|- +..+.+...|..+-++||+++-..+-| .. -.+++.+-..+ ..
T Consensus 200 ~~~l~i~Dt~Gq-------------~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~ 266 (362)
T 1zcb_A 200 NVPFKMVDVGGQ-------------RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVF 266 (362)
T ss_dssp TEEEEEEEECC--------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeEEEEEeccch-------------hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhh
Confidence 367999999993 234567788999999888887766533 11 11222222211 22
Q ss_pred CCCeEEEEeccchhh
Q psy8958 137 QGKRTIFVLTKVSQQ 151 (294)
Q Consensus 137 ~G~RTIGVlTK~D~~ 151 (294)
.+.-.|-|++|.|+.
T Consensus 267 ~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 267 SNVSIILFLNKTDLL 281 (362)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCCEEEEEEChhhh
Confidence 356789999999964
No 217
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=35.10 E-value=77 Score=26.39 Aligned_cols=63 Identities=8% Similarity=0.139 Sum_probs=33.3
Q ss_pred CCCceEEeCCCC-cccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGI-ISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAER-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi-~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~an-s~al~lar~~DP~G~RTIGVlTK 147 (294)
..++++||+|+. ... . ....+.....+|+.+.+...++.. ...++..+++. +.+...|+++
T Consensus 67 ~yD~viiD~p~~~~~~-------~--------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~--~~~~~vv~N~ 129 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE-------D--------LEALADGCDLLVIPSTPDALALDALMLTIETLQKLG--NNRFRILLTI 129 (209)
T ss_dssp GCSEEEEEEECCCSSS-------H--------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTC--SSSEEEEECS
T ss_pred cCCEEEEeCCCCcCcH-------H--------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhcc--CCCEEEEEEe
Confidence 468999999885 321 1 111222344455555554434432 23344555543 4555567899
Q ss_pred ch
Q psy8958 148 VS 149 (294)
Q Consensus 148 ~D 149 (294)
.|
T Consensus 130 ~~ 131 (209)
T 3cwq_A 130 IP 131 (209)
T ss_dssp BC
T ss_pred cC
Confidence 76
No 218
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=34.80 E-value=34 Score=32.12 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=25.7
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~ 120 (294)
.+.|+|+||+...+..++. +. +....|++..+.| +.|+++..
T Consensus 70 ~i~lvDtpGl~~~a~~~~~--lg----~~fl~~ir~ad~i-i~VvD~~~ 111 (368)
T 2dby_A 70 HVEFVDIAGLVKGAHKGEG--LG----NQFLAHIREVAAI-AHVLRCFP 111 (368)
T ss_dssp EEEEEECCSCCCCCCSSSC--TT----HHHHHHHHTCSEE-EEEEECCC
T ss_pred eEEEEECCCccccccccch--HH----HHHHHHHHhCCEE-EEEEECCC
Confidence 5999999999987654321 11 2223456677755 45556654
No 219
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=34.10 E-value=34 Score=31.48 Aligned_cols=60 Identities=8% Similarity=0.074 Sum_probs=28.4
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
-.++.|||+||+.. ++. . +..... +++.|+++......+.... .+- ..-.|.|++|.|
T Consensus 166 ~~~~iliDT~Gi~~------~~~---~-------l~~~~d-~vl~V~d~~~~~~~~~i~~---~il--~~~~ivVlNK~D 223 (349)
T 2www_A 166 GYDIILIETVGVGQ------SEF---A-------VADMVD-MFVLLLPPAGGDELQGIKR---GII--EMADLVAVTKSD 223 (349)
T ss_dssp TCSEEEEECCCC--------CHH---H-------HHTTCS-EEEEEECCC---------------C--CSCSEEEECCCS
T ss_pred CCCEEEEECCCcch------hhh---h-------HHhhCC-EEEEEEcCCcchhHHHhHH---HHH--hcCCEEEEeeec
Confidence 45789999999752 221 1 123444 5556666543111111111 110 123599999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 224 l~ 225 (349)
T 2www_A 224 GD 225 (349)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 220
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=33.51 E-value=22 Score=32.25 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=41.0
Q ss_pred CceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 72 RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 72 ~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
+..++|+.|+.+... ..+.++..+-..+.+..+.+|.-++|.+- +.. .+++...++.+......|+-++||.|
T Consensus 185 d~~lldt~gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-pts---glD~~~~~~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNT---GLNMLPQAREFNEVVGITGLILTKLD 257 (302)
T ss_dssp SEEEECCCCCSSCCH-HHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGG---GGGGHHHHHHHHHHTCCCEEEEECCS
T ss_pred cchHHhcCCCCcchh-HHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCC---CcCHHHHHHHHHHhcCCCEEEEeCCC
Confidence 467899999864321 11233444444555667777885555443 332 12333334444333346899999987
No 221
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=32.85 E-value=39 Score=28.22 Aligned_cols=65 Identities=9% Similarity=0.164 Sum_probs=37.0
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcch-hcHHHHhhhhcCCCCCeEEEEeccc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAE-RSNVTDLVSQMDPQGKRTIFVLTKV 148 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~a-ns~al~lar~~DP~G~RTIGVlTK~ 148 (294)
..+++|||+|+..... ....+...+.+|+.+.+...++. ....++..+++.+...+.-.|+++.
T Consensus 118 ~yD~viiD~p~~~~~~---------------~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~ 182 (245)
T 3ea0_A 118 FYDYIIVDFGASIDHV---------------GVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRA 182 (245)
T ss_dssp HCSEEEEEEESSCCTT---------------HHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEEST
T ss_pred hCCEEEEeCCCCCchH---------------HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecC
Confidence 3688999998744211 11123334556666655443333 2344566666666556677788887
Q ss_pred h
Q psy8958 149 S 149 (294)
Q Consensus 149 D 149 (294)
+
T Consensus 183 ~ 183 (245)
T 3ea0_A 183 D 183 (245)
T ss_dssp T
T ss_pred C
Confidence 5
No 222
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=32.57 E-value=32 Score=31.49 Aligned_cols=51 Identities=8% Similarity=0.156 Sum_probs=32.9
Q ss_pred HhhhhcCCCCceEEEeccCC-CcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 100 MTQTHMSNPNAIILCIQDGS-VDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 100 Lv~~Yi~~p~sIILaV~~a~-~D~ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
|++.-+++-..| +.|+++. -++.....-++...+-..|...|-|+||.|+.
T Consensus 79 l~R~~~anvD~v-~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~ 130 (307)
T 1t9h_A 79 LIRPPICNVDQA-VLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLI 130 (307)
T ss_dssp ETTTTEECCCEE-EEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGC
T ss_pred hhHHHHHhCCEE-EEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccC
Confidence 333456677755 4555555 56665555555554445678999999999975
No 223
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=32.49 E-value=27 Score=31.35 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=31.8
Q ss_pred HHhhhhcCCCCceEEEeccCCCcchh---cHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 99 QMTQTHMSNPNAIILCIQDGSVDAER---SNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 99 ~Lv~~Yi~~p~sIILaV~~a~~D~an---s~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
.|...|+++-+.+|+++-..+.+..- ...+..++. .+...|-|+||+|+.
T Consensus 76 ~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~~piilv~NK~DL~ 128 (301)
T 1u0l_A 76 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLY 128 (301)
T ss_dssp EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGC
T ss_pred eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEeHHHcC
Confidence 46668999999777765554443211 222333443 357789999999964
No 224
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=30.53 E-value=30 Score=28.45 Aligned_cols=60 Identities=13% Similarity=0.112 Sum_probs=31.2
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccch
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVS 149 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D 149 (294)
-+++.|+|+||....+ .. |-.... .++.|+++..... .....+... +.-.+.|+||+|
T Consensus 108 ~~d~iiidt~G~~~~~-----~~-----------~~~~~~-~~i~vvd~~~~~~--~~~~~~~~~---~~~~iiv~NK~D 165 (221)
T 2wsm_A 108 DCDLLLIENVGNLICP-----VD-----------FDLGEN-YRVVMVSVTEGDD--VVEKHPEIF---RVADLIVINKVA 165 (221)
T ss_dssp TCSEEEEEEEEBSSGG-----GG-----------CCCSCS-EEEEEEEGGGCTT--HHHHCHHHH---HTCSEEEEECGG
T ss_pred CCCEEEEeCCCCCCCC-----ch-----------hccccC-cEEEEEeCCCcch--hhhhhhhhh---hcCCEEEEeccc
Confidence 4688999999952211 10 101233 4556666554221 122222222 344789999999
Q ss_pred hh
Q psy8958 150 QQ 151 (294)
Q Consensus 150 ~~ 151 (294)
+.
T Consensus 166 l~ 167 (221)
T 2wsm_A 166 LA 167 (221)
T ss_dssp GH
T ss_pred CC
Confidence 63
No 225
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=28.59 E-value=96 Score=28.87 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred cccceEEEEeCCCCC-------CceEEeCCCCcccCCC
Q psy8958 57 SNEVISMSVKGPGLQ-------RMVLVDLPGIISTSTQ 87 (294)
Q Consensus 57 S~~~I~leI~gP~~p-------~LTLVDLPGi~~~~~~ 87 (294)
|.-++.|.|.+.+.. .|.||||.|--+....
T Consensus 220 SH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t 257 (349)
T 3t0q_A 220 SHSVFMVHINGRNLHTGETSQGKLNLVDLAGSERINSS 257 (349)
T ss_dssp SEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCC--
T ss_pred cceEEEEEEEEEecCCCCeeEEEEEEEeCCCCCccccc
Confidence 556777877755432 5999999998776544
No 226
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=28.57 E-value=63 Score=27.42 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=42.9
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCc-chh-cHHHHhhhhcCCCCCeEEEEecc
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVD-AER-SNVTDLVSQMDPQGKRTIFVLTK 147 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D-~an-s~al~lar~~DP~G~RTIGVlTK 147 (294)
...|.|.|++|--+ .+.|...|++....+||+..-.+.+ +.+ ...+...+..-+...-.|-|-+|
T Consensus 61 ~v~l~iwDtaGqe~-------------~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK 127 (216)
T 4dkx_A 61 TIRLQLWDTAGLER-------------FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127 (216)
T ss_dssp EEEEEEECCSCTTT-------------CGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEEC
T ss_pred EEEEEEEECCCchh-------------hhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Confidence 35688999999321 2467888999999887776544321 111 12334444443344667888899
Q ss_pred chhh
Q psy8958 148 VSQQ 151 (294)
Q Consensus 148 ~D~~ 151 (294)
.|+.
T Consensus 128 ~Dl~ 131 (216)
T 4dkx_A 128 TDLA 131 (216)
T ss_dssp TTCG
T ss_pred cchH
Confidence 9963
No 227
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Probab=28.25 E-value=22 Score=33.19 Aligned_cols=54 Identities=11% Similarity=0.034 Sum_probs=36.2
Q ss_pred hHHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 92 DTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 92 ~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
.+...+-.-+.+| .|++++|.|.. .+|+-+.-+.+.+ .++| .|.||+-|-+|..
T Consensus 116 ~I~k~i~~~I~k~--~P~a~ilvvtN-Pvdi~t~~~~k~s-g~p~--~rViG~gt~LDs~ 169 (330)
T 3ldh_A 116 NIFKFIIPNIVKH--SPDCLKELHPE-LGTDKNKQDWKLS-GLPM--HRIIGSGCNLDSA 169 (330)
T ss_dssp HHHHHHHHHHHHH--CTTCEEEECSS-SHHHHHHHHHHHH-CCCG--GGEECCTTHHHHH
T ss_pred HHHHHHHHHHHhh--CCCceEEeCCC-ccHHHHHHHHHHh-CCCH--HHeecccCchhHH
Confidence 3444444555666 68988777664 4577666666665 3544 6999999999963
No 228
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Probab=27.64 E-value=25 Score=32.71 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=33.9
Q ss_pred HHHHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchh
Q psy8958 93 TRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150 (294)
Q Consensus 93 ~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~ 150 (294)
+...+-.-+.+| .|++++|.|.. .+|+.+.-+.+.+ .++| .|.||+-|-+|.
T Consensus 115 I~~~i~~~i~~~--~p~a~vlvvtN-Pvdi~t~~~~k~s-g~p~--~rviG~gt~LD~ 166 (331)
T 4aj2_A 115 IFKFIIPNVVKY--SPQCKLLIVSN-PVDILTYVAWKIS-GFPK--NRVIGSGCNLDS 166 (331)
T ss_dssp HHHHHHHHHHHH--CTTCEEEECSS-SHHHHHHHHHHHH-CCCG--GGEEECTTHHHH
T ss_pred HHHHHHHHHHHH--CCCeEEEEecC-hHHHHHHHHHHHh-CCCH--HHEEeeccccHH
Confidence 333333445556 68888777664 4566665555554 5554 699999999985
No 229
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.19 E-value=1.3e+02 Score=28.50 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=45.6
Q ss_pred cccceEEEEeCCCC-------CCceEEeCCCCcccCCCCCCh--------------hHHHHHHHHhhh-----h------
Q psy8958 57 SNEVISMSVKGPGL-------QRMVLVDLPGIISTSTQDMAS--------------DTRDLIRQMTQT-----H------ 104 (294)
Q Consensus 57 S~~~I~leI~gP~~-------p~LTLVDLPGi~~~~~~~q~~--------------~~~~~i~~Lv~~-----Y------ 104 (294)
|.-++.|.|.+.+. -.|.||||.|--+....+-.- .+...|..|... |
T Consensus 273 SH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdS 352 (403)
T 4etp_A 273 SHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNS 352 (403)
T ss_dssp SEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGS
T ss_pred cccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccc
Confidence 45567777765432 259999999987765443211 233444444321 1
Q ss_pred ---------cC-C-CCceEEEeccCCCcch-hcHHHHhhhhcC
Q psy8958 105 ---------MS-N-PNAIILCIQDGSVDAE-RSNVTDLVSQMD 135 (294)
Q Consensus 105 ---------i~-~-p~sIILaV~~a~~D~a-ns~al~lar~~D 135 (294)
+. + .-++|.+|.|+..++. +-..|++|.++-
T Consensus 353 kLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~ 395 (403)
T 4etp_A 353 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVN 395 (403)
T ss_dssp HHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHh
Confidence 11 1 2245677888776665 556678887664
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=25.81 E-value=84 Score=27.92 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 97 IRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 97 i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
+.+.+.+++++-. +|+-|++|..-..... ..+.+-+ .+...|.|++|.|+.
T Consensus 13 a~~~~~~~l~~aD-vVl~VvDAr~p~~~~~-~~l~~~l--~~kp~ilVlNK~DL~ 63 (282)
T 1puj_A 13 ARREVTEKLKLID-IVYELVDARIPMSSRN-PMIEDIL--KNKPRIMLLNKADKA 63 (282)
T ss_dssp HHHHHHHHGGGCS-EEEEEEETTSTTTTSC-HHHHHHC--SSSCEEEEEECGGGS
T ss_pred HHHHHHHHHhhCC-EEEEEEeCCCCCccCC-HHHHHHH--CCCCEEEEEECcccC
Confidence 4466677777777 5566677765444321 1222222 457789999999975
No 231
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=25.08 E-value=34 Score=31.80 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=31.6
Q ss_pred HHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 96 LIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 96 ~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
..+++...|....+ +||.|+++. |...+-.-.+.+.+. +...|.|+||.|+.
T Consensus 60 ~f~~~L~~~~~~~~-lil~VvD~~-d~~~s~~~~l~~~l~--~~piilV~NK~DLl 111 (369)
T 3ec1_A 60 DFLSMLHRIGESKA-LVVNIVDIF-DFNGSFIPGLPRFAA--DNPILLVGNKADLL 111 (369)
T ss_dssp HHHHHHHHHHHHCC-EEEEEEETT-CSGGGCCSSHHHHCT--TSCEEEEEECGGGS
T ss_pred HHHHHHHHhhccCc-EEEEEEECC-CCCCchhhHHHHHhC--CCCEEEEEEChhcC
Confidence 34566666655544 777777776 344333223333332 56789999999975
No 232
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=24.76 E-value=38 Score=31.47 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=44.3
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCCcc-------h--hcHHHHhhhhc----CC
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDA-------E--RSNVTDLVSQM----DP 136 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~D~-------a--ns~al~lar~~----DP 136 (294)
-..|.|+|++|-- ..+.+...|..+-++||+++-..+-|- . -.+++.+...+ ..
T Consensus 192 ~~~l~iwDt~GQe-------------~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 192 DLHFKMFDVGGQR-------------SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp TEEEEEEEECCSG-------------GGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred CeeEEEEeCCCch-------------hhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 4578999999832 224677889999999988887766431 1 11222222221 22
Q ss_pred CCCeEEEEeccchhh
Q psy8958 137 QGKRTIFVLTKVSQQ 151 (294)
Q Consensus 137 ~G~RTIGVlTK~D~~ 151 (294)
.+.--|-|++|.|+.
T Consensus 259 ~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 259 TDTSIILFLNKKDLF 273 (353)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred cCCcEEEEEECcCch
Confidence 356789999999963
No 233
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=24.63 E-value=1.1e+02 Score=28.51 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=45.0
Q ss_pred CCCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCC-----------CcchhcH-HH-HhhhhcCC
Q psy8958 70 LQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGS-----------VDAERSN-VT-DLVSQMDP 136 (294)
Q Consensus 70 ~p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~-----------~D~ans~-al-~lar~~DP 136 (294)
-..|.|.|+.| | +..+.+-..|.+.-++||+++--.. ..+..+. .+ .++..-..
T Consensus 160 ~v~l~iwDtaG--------Q-----e~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 160 DIPFHLIDVGG--------Q-----RSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp SCEEEEEECCS--------C-----HHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred eeeeccccCCC--------c-----ccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 36789999888 2 4567888999999999988875541 1121111 11 23333334
Q ss_pred CCCeEEEEeccchhh
Q psy8958 137 QGKRTIFVLTKVSQQ 151 (294)
Q Consensus 137 ~G~RTIGVlTK~D~~ 151 (294)
...--|-|++|.|+.
T Consensus 227 ~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 227 KGAVKLIFLNKMDLF 241 (340)
T ss_dssp TTSEEEEEEECHHHH
T ss_pred CCCeEEEEEECchhh
Confidence 456789999999964
No 234
>3hlu_A Uncharacterized protein DUF2179; alpha-beta half sandwich, structural genomics, PSI-2, protei structure initiative; 2.65A {Eubacterium ventriosum}
Probab=24.50 E-value=48 Score=25.19 Aligned_cols=32 Identities=25% Similarity=0.553 Sum_probs=24.9
Q ss_pred hcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCC
Q psy8958 104 HMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQG 138 (294)
Q Consensus 104 Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G 138 (294)
|-..+..+|++|++ -..-....++++++||+-
T Consensus 42 Ys~~~~~vl~~Vv~---r~e~~~l~~~I~~iDp~A 73 (96)
T 3hlu_A 42 YKNNETEVIMCVMR---KATLVKVRNLLKEVDPDA 73 (96)
T ss_dssp SSSSCCEEEEEEEC---HHHHHHHHHHHHTTCTTC
T ss_pred ccCCCEEEEEEEec---HHHHHHHHHHHHHHCCCe
Confidence 55567789999988 345677788999999983
No 235
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=24.17 E-value=54 Score=30.41 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=32.2
Q ss_pred HHHHHHhhhhcCCCCceEEEeccCCCcchhcHHHHhhhhcCCCCCeEEEEeccchhh
Q psy8958 95 DLIRQMTQTHMSNPNAIILCIQDGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQQ 151 (294)
Q Consensus 95 ~~i~~Lv~~Yi~~p~sIILaV~~a~~D~ans~al~lar~~DP~G~RTIGVlTK~D~~ 151 (294)
+..+++.+.|.+..+ +||.|+++. |...+ .....+++-+ +...|.|+||.|+.
T Consensus 57 e~f~~~l~~i~~~~~-~il~VvD~~-d~~~~-~~~~l~~~~~-~~p~ilV~NK~DL~ 109 (368)
T 3h2y_A 57 DDFLRILNGIGKSDA-LVVKIVDIF-DFNGS-WLPGLHRFVG-NNKVLLVGNKADLI 109 (368)
T ss_dssp HHHHHHHHHHHHSCC-EEEEEEETT-SHHHH-CCTTHHHHSS-SSCEEEEEECGGGS
T ss_pred HHHHHHHHHHhccCc-EEEEEEECC-CCccc-HHHHHHHHhC-CCcEEEEEEChhcC
Confidence 456677777766554 677777776 33322 2222233222 46789999999974
No 236
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=23.78 E-value=1.1e+02 Score=27.80 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=11.7
Q ss_pred CCCceEEeCCCCcc
Q psy8958 70 LQRMVLVDLPGIIS 83 (294)
Q Consensus 70 ~p~LTLVDLPGi~~ 83 (294)
-.++.|||+||+.+
T Consensus 147 ~~~~iliDT~Gi~~ 160 (337)
T 2qm8_A 147 GFDVILVETVGVGQ 160 (337)
T ss_dssp TCCEEEEEECSSSS
T ss_pred CCCEEEEECCCCCc
Confidence 46899999999863
No 237
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=23.02 E-value=1.8e+02 Score=26.69 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=44.4
Q ss_pred cccceEEEEeCCCC-------CCceEEeCCCCcccCCCC---C--------C---hhHHHHHHHHhhh------------
Q psy8958 57 SNEVISMSVKGPGL-------QRMVLVDLPGIISTSTQD---M--------A---SDTRDLIRQMTQT------------ 103 (294)
Q Consensus 57 S~~~I~leI~gP~~-------p~LTLVDLPGi~~~~~~~---q--------~---~~~~~~i~~Lv~~------------ 103 (294)
|.-++.|.|...+. -.|+||||.|--+....+ + + ..+...|..|...
T Consensus 204 SH~if~i~v~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT 283 (325)
T 1bg2_A 204 SHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMT 283 (325)
T ss_dssp SEEEEEEEEEEEETTTCCEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHH
T ss_pred CeEEEEEEEEEEecCCCcEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHH
Confidence 44566777765332 359999999986654321 1 0 1255666665432
Q ss_pred -----hcC-C-CCceEEEeccCCCcch-hcHHHHhhhhc
Q psy8958 104 -----HMS-N-PNAIILCIQDGSVDAE-RSNVTDLVSQM 134 (294)
Q Consensus 104 -----Yi~-~-p~sIILaV~~a~~D~a-ns~al~lar~~ 134 (294)
++. + .-++|.+|.|+..++. +-..|++|.++
T Consensus 284 ~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~ra 322 (325)
T 1bg2_A 284 RILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRA 322 (325)
T ss_dssp HHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHh
Confidence 222 1 2345667777776654 55567777654
No 238
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=21.61 E-value=48 Score=29.58 Aligned_cols=16 Identities=31% Similarity=0.577 Sum_probs=12.8
Q ss_pred CCceEEeCCCCcccCC
Q psy8958 71 QRMVLVDLPGIISTST 86 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~ 86 (294)
..+.|+|+||+.....
T Consensus 165 ~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 165 KELELLDTPGILWPKF 180 (282)
T ss_dssp TTEEEEECCCCCCSCC
T ss_pred CCEEEEECcCcCCCCC
Confidence 3799999999986543
No 239
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=21.07 E-value=79 Score=25.51 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=37.2
Q ss_pred CCceEEeCCCCcccCCCCCChhHHHHHHHHhhhhcCCCCceEEEeccCCC-cchhc-HHHHhhhhc-CCCCCeEEEEecc
Q psy8958 71 QRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV-DAERS-NVTDLVSQM-DPQGKRTIFVLTK 147 (294)
Q Consensus 71 p~LTLVDLPGi~~~~~~~q~~~~~~~i~~Lv~~Yi~~p~sIILaV~~a~~-D~ans-~al~lar~~-DP~G~RTIGVlTK 147 (294)
..|.++|++|... | -+.|...|.+..+++|++..-.+. .+.+. ..+...++. ...+.-.|.|.+|
T Consensus 56 ~~l~~~Dt~~~~~-----~-------~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK 123 (192)
T 2cjw_A 56 ATIILLDMWENKG-----E-------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123 (192)
T ss_dssp EEEEEECCCCC----------------CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEEEeccCcc-----h-------hhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEec
Confidence 3578899998432 1 122455677767777666544332 12221 222333332 3445678999999
Q ss_pred chh
Q psy8958 148 VSQ 150 (294)
Q Consensus 148 ~D~ 150 (294)
+|+
T Consensus 124 ~Dl 126 (192)
T 2cjw_A 124 SDL 126 (192)
T ss_dssp TTC
T ss_pred hhh
Confidence 995
Done!