RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8958
         (294 letters)



>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
           [TaxId: 44689]}
          Length = 306

 Score = 99.9 bits (248), Expect = 3e-25
 Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 4/154 (2%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLT----KESDLVELRKEVERRMMNSVRKGKTV 56
           +TR P+ + L+  P      +       L        D  E+R+E+ R       K K +
Sbjct: 57  VTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGI 116

Query: 57  SNEVISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQ 116
           S + I++ +  P +  + LVDLPGI      D  +D    IR+M   ++   NAII+ + 
Sbjct: 117 SAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVT 176

Query: 117 DGSVDAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150
             + D   S+   L  ++DP+GKRTI V+TK+  
Sbjct: 177 PANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210


>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 299

 Score = 89.5 bits (221), Expect = 2e-21
 Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%)

Query: 1   MTRSPVKVTLSEGPYHVAQFKDSSREFDLTKESDLVELRKEVERRMMNSVRKGKTVSNEV 60
           +TR P+ + L       A+F     +    K +D  E+R E+E          K +S   
Sbjct: 59  VTRRPLVLQLVNSTTEYAEFLHCKGK----KFTDFEEVRLEIEAETDRVTGTNKGISPVP 114

Query: 61  ISMSVKGPGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSV 120
           I++ V  P +  + LVDLPG+      D   D    IR M    ++  N +IL +   + 
Sbjct: 115 INLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANS 174

Query: 121 DAERSNVTDLVSQMDPQGKRTIFVLTKVSQ 150
           D   S+   +  ++DPQG+RTI V+TK+  
Sbjct: 175 DLANSDALKIAKEVDPQGQRTIGVITKLDL 204


>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus
           [TaxId: 1280]}
          Length = 117

 Score = 28.6 bits (64), Expect = 0.41
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 230 RIKKIL--AGKLFPMKALGYFAVVTGRGGKKDESIQDIKEYEENFFKKSKLFSTKVR 284
           +IK+ +    K+     L    +V  R   KD +   I+   E+  K +K+F+ K++
Sbjct: 61  KIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKKIK 117


>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 400

 Score = 29.4 bits (65), Expect = 0.55
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 68  PGLQRMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAIILCIQDGSVDAERSNV 127
           P +  +V  DLPGI ST+              + +      +  I+         +    
Sbjct: 104 PNIPNVVFWDLPGIGSTN--------FPPDTYLEKMKFYEYDFFIIISATRFKKNDI--- 152

Query: 128 TDLVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTD 170
            D+   +    K   FV TKV   +           ++  V  
Sbjct: 153 -DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQ 194


>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
           1, different strains [TaxId: 10298]}
          Length = 329

 Score = 29.2 bits (65), Expect = 0.55
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)

Query: 72  RMVLVDLPGIISTSTQDMASDTRDLIRQMTQTHMSNPNAI 111
            + ++D       S          L   M QTH++ P +I
Sbjct: 278 HVFILDY----DQSPAGCRDALLQLTSGMVQTHVTTPGSI 313


>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
           {Sulfolobus tokodaii [TaxId: 111955]}
          Length = 224

 Score = 28.3 bits (62), Expect = 0.90
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 114 CIQDGSVDAERSNVTD-LVSQMDPQGKRTIFVLTKVSQQLIRIEKDGSVDAERSNVTDLG 172
                 V A    +      Q+   G   + +     Q+L ++ K G       ++ +LG
Sbjct: 134 PYDRVVVWATAPTLLCKPYEQLKEGGIMILPIGVGRVQKLYKVIKKG----NSPSLENLG 189

Query: 173 SVM--DLQGKH 181
            VM   + G +
Sbjct: 190 EVMFGRIGGLY 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 974,359
Number of extensions: 42492
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 10
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)