BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8965
(193 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus
GN=TRAPPC5 PE=2 SV=1
Length = 188
Score = 220 bits (560), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 136/176 (77%), Gaps = 1/176 (0%)
Query: 18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
K+ +L++P+ + + ++S++ +ALLF ELVQYCQ + SV E QSKL ++G +G +L+D
Sbjct: 9 KSPLLERPLG-RPRGEVSLSAFALLFCELVQYCQRRVYSVAELQSKLAQLGHQVGLRLLD 67
Query: 78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
RE+ G+RE K+L++L FVK +W+ +FGKE DKLE+ANDD++TYY+IE+E LVN F
Sbjct: 68 PLVSRERGGRRETKVLSVLLFVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTF 127
Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
ISVP++ +LNCA F AG+VEAVL GF + VTAHWHKGTT MI+F+E VIARDK
Sbjct: 128 ISVPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHWHKGTTLMIKFEEGVIARDK 183
>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens
GN=TRAPPC5 PE=1 SV=1
Length = 188
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 136/176 (77%), Gaps = 1/176 (0%)
Query: 18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
K+++L++ + + + ++S++ +ALLFSELVQ+CQ++ SV E QS+L +G+ +GA+++D
Sbjct: 9 KSALLERAL-ARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLD 67
Query: 78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
REK +RE K+L L FVK +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct: 68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127
Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
ISVPK+ +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183
>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus
GN=Trappc5 PE=1 SV=1
Length = 188
Score = 216 bits (550), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 95/176 (53%), Positives = 136/176 (77%), Gaps = 1/176 (0%)
Query: 18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
K+++L++ + + + ++S++ +ALLFSELVQ+CQ++ SV E Q++L +G+ +GA+++D
Sbjct: 9 KSALLERAL-VRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLD 67
Query: 78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
REK +RE K+L L FVK +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct: 68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127
Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
ISVPK+ +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183
>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus
GN=TRAPPC5 PE=2 SV=1
Length = 188
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 94/176 (53%), Positives = 136/176 (77%), Gaps = 1/176 (0%)
Query: 18 KTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLID 77
K+++L++ + + + ++S++ +ALLFSELVQ+CQ++ +V E Q++L +G+ +GA+++D
Sbjct: 9 KSALLERAL-ARPRTEVSLSAFALLFSELVQHCQSRVFTVAELQARLAALGRQVGARVLD 67
Query: 78 INFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKF 137
REK +RE K+L L FVK +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +
Sbjct: 68 ALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTY 127
Query: 138 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
ISVPK+ +LNCA F AGIVEAVL + GF + VTAHWHKGTT MI+F+E VIARD+
Sbjct: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDR 183
>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium
discoideum GN=trappc5 PE=3 SV=1
Length = 186
Score = 152 bits (385), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 118/179 (65%), Gaps = 8/179 (4%)
Query: 21 ILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINF 80
I+D+P+ +K K +I+I+ +A LFSE++QYCQ++ + E + KL ++G SIG +L+++
Sbjct: 8 IVDRPL-SKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLC 66
Query: 81 YREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 140
REKN KRE KLL IL F+ +WK++FGK D LE++ + + Y + + +VNKFIS+
Sbjct: 67 VREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISL 126
Query: 141 PKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH-------WHKGTTYMIQFDEQVIARD 192
PK SLNCA FVAGI+E +L + F + VTAH T +I+F+ +VI R+
Sbjct: 127 PKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVIERN 185
>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1
Length = 209
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 113/180 (62%), Gaps = 6/180 (3%)
Query: 20 SILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDIN 79
S+ ++ +N D++++ +A +FSEL+Q Q++ + EF+ KL+E G +G KL+++
Sbjct: 27 SVYEQNLNKIRNSDVNLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRVGQKLVELV 86
Query: 80 FYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFIS 139
+RE+N KRE ++L ILQ++ ++WK +FGK D LE++ + Y +++ L+NKFIS
Sbjct: 87 VWRERNPKRETRILGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFIS 146
Query: 140 VPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARDK 193
VPK+ LNC ++AGI+E L++ F +AH + T +I+ D VIAR++
Sbjct: 147 VPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPLSQYPYRTVILIKLDPSVIAREE 206
>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium
falciparum PE=3 SV=1
Length = 184
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 116/184 (63%), Gaps = 10/184 (5%)
Query: 16 QPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL 75
+ K+SI +K +N ++K D+S++ +++LFSE+VQYC KS + LHE+G +G KL
Sbjct: 3 KSKSSI-EKELN-RIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKL 60
Query: 76 IDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVN 135
+ Y+ K KR I ++NIL F+ ++WK +F D L ++ D Y + ++ L+N
Sbjct: 61 NEYLTYKNK-VKRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLN 118
Query: 136 KFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-HKG-----TTYMIQFDEQVI 189
KFI+VPKD G++NCA F AGIVE L + F++ VTAH H+G TT I+F +V+
Sbjct: 119 KFINVPKDYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIHEGDDNYNTTIFIKFYPEVV 178
Query: 190 ARDK 193
R+K
Sbjct: 179 EREK 182
>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium
falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1
Length = 184
Score = 124 bits (310), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 116/184 (63%), Gaps = 10/184 (5%)
Query: 16 QPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKL 75
+ K+SI +K +N ++K D+S++ +++LFSE+VQYC KS + LHE+G +G KL
Sbjct: 3 KSKSSI-EKELN-RIKQDVSLSAFSILFSEMVQYCLYKSKRGYRIEDCLHEMGLRVGYKL 60
Query: 76 IDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVN 135
+ Y+ K KR I ++NIL F+ ++WK +F D L ++ D Y + ++ L+N
Sbjct: 61 NEYLTYKNK-VKRSINIINILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLN 118
Query: 136 KFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-HKG-----TTYMIQFDEQVI 189
KFI+VPKD G++NCA F AGIVE L + F++ VTAH H+G TT I+F +V+
Sbjct: 119 KFINVPKDYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIHEGDDNYNTTIFIKFYPEVV 178
Query: 190 ARDK 193
R+K
Sbjct: 179 EREK 182
>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1
SV=1
Length = 283
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 10/118 (8%)
Query: 81 YREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 140
Y K +R++K+L+ILQF+ LW +F D L ++++ + Y +++ + +FI
Sbjct: 165 YITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFI-- 222
Query: 141 PKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQVIARD 192
P + +++C FV GI++ L N GF VTAH + T Y+IQFD QV+ R+
Sbjct: 223 PGE--NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDRE 278
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 31 KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYR 82
+ + S++ A LF E++ + +F++KL + G +IG +L+++ +R
Sbjct: 54 RQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFR 105
>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1
SV=1
Length = 155
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 76/143 (53%), Gaps = 9/143 (6%)
Query: 30 VKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE 89
+K ++ ++ + L +++Y + + ++ L +G +G KL+++ N +RE
Sbjct: 1 MKREVPVSTMSYLVCGMIEYLMEQR---SDIEADLKSIGYEVGIKLLELC-----NFERE 52
Query: 90 IKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNC 149
+++ +L +L + + ++E+A D +RTY L + + L ++FISVP + L+
Sbjct: 53 VRISTLLYRATFDLLSLVSDSD-RRVEKARDVDRTYLLTDSDGLFSRFISVPDEWNGLSA 111
Query: 150 AIFVAGIVEAVLNNCGFKSTVTA 172
V G+++A L G+ S VTA
Sbjct: 112 DSIVCGMIQAALMASGYDSEVTA 134
>sp|Q99394|TRS33_YEAST Trafficking protein particle complex subunit 33 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS33 PE=1
SV=1
Length = 268
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 62 SKLHEVGQSIGAKLIDIN-FYREKNGK-REIKLLNILQFVKINLWKNIFGKECDKLERAN 119
++L +G IG KL ++ F N K +E+ LL I++F+ ++WK IFGK+ D L+
Sbjct: 121 ARLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLK--T 178
Query: 120 DDERTYYLIEQESLVNKFISVPKDKGSLNCAI------FVAGIVEAVLNNCGFKS 168
+ T+YL++ + + S+ +D + + GI+ VL++ G+ S
Sbjct: 179 NHRGTFYLLDYDYRPIQSFSLEEDAKNEELKMIEPFLEIPVGIIRGVLSSLGYSS 233
>sp|Q78XR0|TPC6A_MOUSE Trafficking protein particle complex subunit 6A OS=Mus musculus
GN=Trappc6a PE=2 SV=1
Length = 159
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 51 QNKSLSVPEFQSKLHEVGQSIGAKL-IDINFYREKNGKREIKLLNILQFVKINLWKNIFG 109
+ +SLSV + VGQ++G +L ++ +RE+ L+ L+F+ +LW +F
Sbjct: 30 KRRSLSV--LEGLGFRVGQALGERLPLETPAFREE--------LDALKFLCRDLWAAMFQ 79
Query: 110 KECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA----IFVAGIVEAVLNNCG 165
K D L + + TY L Q++ +++ L A F G++ L+ G
Sbjct: 80 KHMDGLR--TNHQGTYVL--QDNSFPLLVTMGSGPQYLEEAPKFLAFTCGLLCGALHTLG 135
Query: 166 FKSTVTA 172
F+S VTA
Sbjct: 136 FQSLVTA 142
>sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B OS=Mus musculus
GN=Trappc6b PE=2 SV=1
Length = 158
Score = 37.0 bits (84), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 62 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 121
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L +
Sbjct: 34 TKLESMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLR--TNH 88
Query: 122 ERTYYLIEQESLVNKFISVPKDKGSLNCA----IFVAGIVEAVLNNCGFKSTVTA 172
+ Y L Q++ I + K L A F G++ L+N G KS VTA
Sbjct: 89 QGIYVL--QDNKFRLLIQLSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTA 141
>sp|O75865|TPC6A_HUMAN Trafficking protein particle complex subunit 6A OS=Homo sapiens
GN=TRAPPC6A PE=1 SV=2
Length = 159
Score = 37.0 bits (84), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 51 QNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGK 110
Q SLSV E VGQ++G +L RE RE L++L+F+ +LW +F K
Sbjct: 30 QKMSLSVLEGMG--FRVGQALGERLP-----RETLAFREE--LDVLKFLCKDLWVAVFQK 80
Query: 111 ECDKLERANDDERTYYLIEQESLVNKF-ISVPKDKG------SLNCAIFVAGIVEAVLNN 163
+ D L + + TY L + N F + +P G + F G++ L
Sbjct: 81 QMDSLR--TNHQGTYVLQD-----NSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYT 133
Query: 164 CGFKSTVTA 172
G +S VTA
Sbjct: 134 LGIESVVTA 142
>sp|Q3T086|TPC6A_BOVIN Trafficking protein particle complex subunit 6A OS=Bos taurus
GN=TRAPPC6A PE=2 SV=1
Length = 159
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 21/113 (18%)
Query: 67 VGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERAN------- 119
VGQ++G +L RE RE L+IL+F+ +LW +F K+ D L R N
Sbjct: 44 VGQALGERL-----PRETLTFREE--LDILKFLCKDLWVAVFHKQMDSL-RTNHQGTYVL 95
Query: 120 DDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 172
D L+ S + PK F G++ L+ G KS VTA
Sbjct: 96 QDNSFPLLVRMASGLQYLEEAPK------FLAFTCGLLRGTLSTLGVKSLVTA 142
>sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subunit 6B OS=Homo sapiens
GN=TRAPPC6B PE=1 SV=1
Length = 158
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 62 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 121
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L R N
Sbjct: 34 TKLENMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNL-RTNHQ 89
Query: 122 ------ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 172
+ + L+ Q S +++ + C G++ L+N G KS VTA
Sbjct: 90 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTC-----GLIRGGLSNLGIKSIVTA 141
>sp|Q32L78|TPC6B_BOVIN Trafficking protein particle complex subunit 6B OS=Bos taurus
GN=TRAPPC6B PE=2 SV=1
Length = 158
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 62 SKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDD 121
+KL +G +G LI+ K+ R L+I++F+ + W +F K+ D L R N
Sbjct: 34 TKLENMGFRVGQGLIE---RFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNL-RTNHQ 89
Query: 122 ------ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 172
+ + L+ Q S +++ + C G++ L+N G KS VTA
Sbjct: 90 GIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTC-----GLIRGGLSNLGIKSIVTA 141
>sp|A7GCL0|FOLD_CLOBL Bifunctional protein FolD OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=folD PE=3 SV=1
Length = 282
Score = 33.9 bits (76), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 35 SINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIG-AKLIDINFYREKNGKREIKLL 93
+++ L + V C +K++ +P K V +IG AKLI ++ E +
Sbjct: 173 PLSMMLLSHNATVTICHSKTIDLPSITKKADIVVTAIGKAKLIKEEYFNEDS-------- 224
Query: 94 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 153
I+ V IN+ +N GK C ++ N E+ V VPK GS+ + +
Sbjct: 225 -IVMDVSINVDEN--GKLCGDVDFENVKEK----------VGAITPVPKGVGSVTTTLLL 271
Query: 154 AGIVEAVLNN 163
IV+A N
Sbjct: 272 KHIVDAAERN 281
>sp|B1IIW9|FOLD_CLOBK Bifunctional protein FolD OS=Clostridium botulinum (strain Okra /
Type B1) GN=folD PE=3 SV=1
Length = 282
Score = 33.9 bits (76), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 47 VQYCQNKSLSVPEFQSKLHEVGQSIG-AKLIDINFYREKNGKREIKLLNILQFVKINLWK 105
V C +K++ +P K V +IG AKLI ++ E + I+ V IN+ +
Sbjct: 185 VTICHSKTIDLPSITKKADIVVTAIGKAKLIKEEYFNENS---------IIIDVSINVDE 235
Query: 106 NIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNN 163
N GK C ++ N E+ V VPK GS+ + + IVEA N
Sbjct: 236 N--GKLCGDVDFENVKEK----------VGAITPVPKGVGSVTTTLLLKHIVEAAERN 281
>sp|A5I112|FOLD_CLOBH Bifunctional protein FolD OS=Clostridium botulinum (strain Hall /
ATCC 3502 / NCTC 13319 / Type A) GN=folD PE=3 SV=1
Length = 282
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 35 SINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIG-AKLIDINFYREKNGKREIKLL 93
+++ L + V C ++++ +P K V +IG AKLI ++ E +
Sbjct: 173 PLSMMVLSHNATVTICHSRTIDLPSITKKADIVVTAIGKAKLIKEEYFNEDS-------- 224
Query: 94 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 153
I+ V IN+ +N GK C ++ N E+ V VPK GS+ + +
Sbjct: 225 -IVMDVSINIDEN--GKLCGDVDFENVKEK----------VGAITPVPKGVGSVTTTLLL 271
Query: 154 AGIVEAVLNN 163
IV+A N
Sbjct: 272 KHIVDAAERN 281
>sp|A7FT56|FOLD_CLOB1 Bifunctional protein FolD OS=Clostridium botulinum (strain ATCC
19397 / Type A) GN=folD PE=3 SV=1
Length = 282
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 35 SINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIG-AKLIDINFYREKNGKREIKLL 93
+++ L + V C ++++ +P K V +IG AKLI ++ E +
Sbjct: 173 PLSMMVLSHNATVTICHSRTIDLPSITKKADIVVTAIGKAKLIKEEYFNEDS-------- 224
Query: 94 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 153
I+ V IN+ +N GK C ++ N E+ V VPK GS+ + +
Sbjct: 225 -IVMDVSINIDEN--GKLCGDVDFENVKEK----------VGAITPVPKGVGSVTTTLLL 271
Query: 154 AGIVEAVLNN 163
IV+A N
Sbjct: 272 KHIVDAAERN 281
>sp|C1FKP7|FOLD_CLOBJ Bifunctional protein FolD OS=Clostridium botulinum (strain Kyoto /
Type A2) GN=folD PE=3 SV=1
Length = 282
Score = 33.5 bits (75), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 47 VQYCQNKSLSVPEFQSKLHEVGQSIG-AKLIDINFYREKNGKREIKLLNILQFVKINLWK 105
V C +K++ +P K V +IG AKLI ++ E + I+ V IN+ +
Sbjct: 185 VTICHSKTIDLPSITKKADIVVTAIGKAKLIKEEYFNEDS---------IVMDVSINVDE 235
Query: 106 NIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNN 163
N GK C ++ N E+ V VPK GS+ + + IV+A N
Sbjct: 236 N--GKLCGDVDFENVKEK----------VGAITPVPKGVGSVTTTLLLKHIVDAAERN 281
>sp|Q7VCC2|PCYA_PROMA Phycocyanobilin:ferredoxin oxidoreductase OS=Prochlorococcus
marinus (strain SARG / CCMP1375 / SS120) GN=pcyA PE=3
SV=1
Length = 247
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 47 VQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREK------NGKREIKLLNILQFVK 100
V + + + +P F L V Q I A ++D++ R+K N +I++ + + K
Sbjct: 81 VVFFPDPAFDLPIFGVDLIAVPQGISAAIVDLSPVRDKLPRTIENQLAQIEIPSFEKVRK 140
Query: 101 INLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISV 140
+ W +IF + +E ++L LV+KF+++
Sbjct: 141 LPDWGDIFSSHVQFITPIGAEENGFFL----DLVDKFLTI 176
>sp|Q6ZMW3|EMAL6_HUMAN Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens
GN=EML6 PE=2 SV=2
Length = 1958
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 32 HDISINLYALLFSELVQYCQNKSLSVPEF----QSKLHEVGQSIGAKLIDINFYREKNGK 87
HD +++Y +L S+ V C+ S + + KL +V +L F+ GK
Sbjct: 1103 HDNFVDIYNVLTSKRVGICKGASSYITHIDWDSRGKLLQVNSGAREQL----FFEAPRGK 1158
Query: 88 REIKLLNILQFVKINLWKNIFGKECDKLERANDD 121
R I + ++ ++ + W + G C+ + A+ D
Sbjct: 1159 RHIIRPSEIEKIEWDTWTCVLGPTCEGIWPAHSD 1192
>sp|O29866|DPHB_ARCFU Diphthine synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=dphB PE=1
SV=1
Length = 251
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 101 INLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD----------------K 144
I + FGK +LER++ +E ++ LIE+ + + VP D K
Sbjct: 42 IEEMEEFFGKRVVELERSDLEENSFRLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERK 101
Query: 145 GSLNCAIFVAGIVEAV-----LNNCGFKSTVTAHWHKGTT 179
G I A I AV L+N F + T WH+ T
Sbjct: 102 GVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQT 141
>sp|C3KT80|FOLD_CLOB6 Bifunctional protein FolD OS=Clostridium botulinum (strain 657 /
Type Ba4) GN=folD PE=3 SV=1
Length = 282
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 35 SINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIG-AKLIDINFYREKNGKREIKLL 93
+++ L + V C +K++ +P + V +IG AKLI ++ E +
Sbjct: 173 PLSMMVLSHNATVTICHSKTIDLPSITKRADIVVTAIGKAKLIKEEYFNEDS-------- 224
Query: 94 NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 153
I+ V IN+ +N GK C ++ N E+ V VPK GS+ + +
Sbjct: 225 -IVIDVSINVDEN--GKLCGDVDFENVKEK----------VGAITPVPKGVGSVTTTLLL 271
Query: 154 AGIVEAVLNN 163
IV+A N
Sbjct: 272 KHIVDAAERN 281
>sp|P36149|BET3_YEAST Trafficking protein particle complex subunit BET3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET3 PE=1
SV=1
Length = 193
Score = 30.4 bits (67), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 24/158 (15%)
Query: 34 ISINLYALLFSELV-QYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE--I 90
I+ L+ L + +V Q CQ+ + L+ +G +IG +LI+ R + E +
Sbjct: 25 INTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLV 84
Query: 91 KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 150
K +L ++ NI + + ++ T+ LI E+ + F+ +P D +
Sbjct: 85 KTSEVLSKCAFKIFLNI----TPNITNWSHNKDTFSLILDENPLADFVELPMDAMK---S 137
Query: 151 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQV 188
++ + I+ VL KG+ M+Q D V
Sbjct: 138 LWYSNILCGVL--------------KGSLEMVQLDCDV 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,623,059
Number of Sequences: 539616
Number of extensions: 2630946
Number of successful extensions: 6523
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 6500
Number of HSP's gapped (non-prelim): 49
length of query: 193
length of database: 191,569,459
effective HSP length: 111
effective length of query: 82
effective length of database: 131,672,083
effective search space: 10797110806
effective search space used: 10797110806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)