Query psy8965
Match_columns 193
No_of_seqs 114 out of 504
Neff 6.1
Searched_HMMs 29240
Date Sat Aug 17 00:14:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_B ZGC 92866, trafficking 100.0 8.7E-66 3E-70 423.1 16.9 183 10-193 1-183 (188)
2 3cue_B Transport protein parti 100.0 2.4E-56 8.2E-61 384.3 13.5 170 19-193 43-279 (283)
3 2c0j_B R32611_2; palmitate; HE 100.0 4.7E-54 1.6E-58 345.5 13.8 148 34-186 3-159 (160)
4 1sz7_A BET3 homolog, trafficki 100.0 4.7E-53 1.6E-57 350.0 16.2 159 29-190 18-182 (200)
5 2bjn_A TPC6, trafficking prote 100.0 1.7E-52 5.8E-57 336.3 14.8 149 33-186 3-159 (160)
6 3cue_D Transport protein parti 100.0 6.1E-53 2.1E-57 348.0 12.4 173 10-190 6-186 (193)
7 2oso_A Hypothetical protein MJ 94.8 0.065 2.2E-06 42.0 6.5 124 32-187 26-160 (163)
8 3tfg_A ALR2278 protein; heme-b 77.3 4 0.00014 32.2 5.5 86 87-187 92-184 (189)
9 2kii_A Putative uncharacterize 67.3 11 0.00036 29.5 5.7 38 149-186 138-180 (181)
10 2vqg_A Uncharacterized protein 65.2 3.5 0.00012 29.7 2.3 20 148-167 16-35 (99)
11 3sj5_A Methyl-accepting chemot 51.6 83 0.0028 24.5 11.4 111 61-188 64-182 (188)
12 1hks_A Heat-shock transcriptio 36.4 32 0.0011 24.5 3.4 64 97-168 6-69 (106)
13 2ve8_A FTSK, DNA translocase F 27.4 72 0.0025 21.6 3.8 39 41-80 10-49 (73)
14 3ci9_A Heat shock factor-bindi 23.5 94 0.0032 19.3 3.5 28 44-71 12-40 (48)
15 1jg5_A GTP cyclohydrolase I fe 22.4 33 0.0011 23.8 1.3 15 57-71 52-66 (83)
16 3lu0_A DNA-directed RNA polyme 22.0 19 0.00065 31.2 0.0 36 42-77 277-320 (329)
17 2bnk_A Early protein GP16.7; D 20.7 1.7E+02 0.0057 19.2 4.4 42 60-106 12-55 (67)
18 2hfv_A Hypothetical protein RP 20.2 55 0.0019 23.4 2.2 23 151-173 32-54 (97)
No 1
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=8.7e-66 Score=423.07 Aligned_cols=183 Identities=56% Similarity=1.017 Sum_probs=159.0
Q ss_pred ccccccCCCCccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCccc
Q psy8965 10 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKRE 89 (193)
Q Consensus 10 ~~~~~~~~~~~i~~~~l~~~~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~ 89 (193)
|+.+.+++..+|+||||+ +.+++||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|++..+||
T Consensus 1 ~~~~~~~~~~~i~~~~l~-~~~~~Vs~s~f~ll~~EiV~~~~~~~~~~~ev~~~Le~mGy~IG~RLiE~~~~r~~~~~R~ 79 (188)
T 2j3w_B 1 MEVRFTRGKSAILERSLT-RPKTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRE 79 (188)
T ss_dssp ---------------------CCEEEHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred CCcccCCCCCccccCccc-cchhHhhHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHhhHHHhHHHHHHHHhhcCCCccc
Confidence 456678889999999999 9999999999999999999999999999999999999999999999999999999756899
Q ss_pred ccHHHHHHHHHHHHHHhhhCccccccccccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceE
Q psy8965 90 IKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKST 169 (193)
Q Consensus 90 ~~~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~ 169 (193)
++++|+++||||++||++||||+|+|+++|||+|+|+|+|+||++++|+|+|+++++++|++|+||||||||+++||+|+
T Consensus 80 ~d~ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~ 159 (188)
T 2j3w_B 80 TKVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAK 159 (188)
T ss_dssp CSHHHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceE
Confidence 99999999999999999999999999877999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCceEEEEEechhhhhccC
Q psy8965 170 VTAHWHKGTTYMIQFDEQVIARDK 193 (193)
Q Consensus 170 Vta~~~~~~~f~Ikf~~~v~~re~ 193 (193)
||||++|+|+|+|||+++|++||+
T Consensus 160 Vta~~~~~t~f~Ikf~~~v~~re~ 183 (188)
T 2j3w_B 160 VTVHWHKGTTLMIKFDESVIARDK 183 (188)
T ss_dssp EEEEESSSEEEEEEECHHHHHHHH
T ss_pred EEEEeCCCEEEEEEecHHHHHHHH
Confidence 999999999999999999999985
No 2
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-56 Score=384.29 Aligned_cols=170 Identities=30% Similarity=0.622 Sum_probs=145.4
Q ss_pred CccccCccCccCcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccC-------------
Q psy8965 19 TSILDKPINTKVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKN------------- 85 (193)
Q Consensus 19 ~~i~~~~l~~~~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~------------- 85 (193)
..|+|++|. +.+.+||+|+|+|||+|||+|++++.++++|++++|+.|||+||.||+|++++|++.
T Consensus 43 ~~i~~~~l~-~~~~~Vs~s~fafLf~EmV~~~~~~~~~~~e~e~rLe~mGy~IG~RLlE~l~~R~~~~~~~~~~~~~~~~ 121 (283)
T 3cue_B 43 SRIYSESLL-FKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLS 121 (283)
T ss_dssp -------------CEEEHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHCC------------------
T ss_pred Ccccccccc-cCcchhhHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhhhHHHHHHHHhhcccCcccccccccccc
Confidence 699999999 888999999999999999999999999999999999999999999999999998752
Q ss_pred ------------------------------------------------CcccccHHHHHHHHHHHHHHhhhCcccccccc
Q psy8965 86 ------------------------------------------------GKREIKLLNILQFVKINLWKNIFGKECDKLER 117 (193)
Q Consensus 86 ------------------------------------------------~~R~~~~ld~lkFIck~~Wk~lFgkqaD~L~~ 117 (193)
.+||.|++|+++||||++|+++||||+|+|++
T Consensus 122 s~~ss~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~la~r~t~~~~R~~d~ldilkFIcK~~Wk~lFgKqaD~Lek 201 (283)
T 3cue_B 122 QNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVK 201 (283)
T ss_dssp -------------------------------------------CCCCCSSSCCCHHHHHHHHHHHHHHHTTSSCCSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhCCCcchhcc
Confidence 38999999999999999999999999999965
Q ss_pred ccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe------CCceEEEEEechhhhhc
Q psy8965 118 ANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQVIAR 191 (193)
Q Consensus 118 ~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~------~~~~~f~Ikf~~~v~~r 191 (193)
+++++|+|||+|++|++++|++++ +++|++|+||||||||+++||+|+||||. +++|+|+|||+++|++|
T Consensus 202 tn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA~~~p~~~~~~~T~~~IkF~~~v~~R 277 (283)
T 3cue_B 202 SSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDR 277 (283)
T ss_dssp CSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEEECCCCSSCTTCEEEECCCCHHHHHH
T ss_pred ccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEEEEcccccCCCceEEEEEecHHHHhh
Confidence 666779999999999999999974 68999999999999999999999999998 35899999999999999
Q ss_pred cC
Q psy8965 192 DK 193 (193)
Q Consensus 192 e~ 193 (193)
|+
T Consensus 278 e~ 279 (283)
T 3cue_B 278 EG 279 (283)
T ss_dssp HH
T ss_pred hh
Confidence 95
No 3
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=4.7e-54 Score=345.45 Aligned_cols=148 Identities=21% Similarity=0.251 Sum_probs=132.2
Q ss_pred chHHHHHHHHHHHHHHHHHhcCC-----hhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhh
Q psy8965 34 ISINLYALLFSELVQYCQNKSLS-----VPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 108 (193)
Q Consensus 34 Vs~s~f~~L~~EiV~~~~~~~~~-----~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lF 108 (193)
||.|+|+|||+|||+|++++.++ .++++++|++|||+||.||+|+++ |+. +||.|++|+++||||++|+++|
T Consensus 3 ~s~s~f~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~IG~RLiE~~~-r~~--~r~~d~ld~l~fI~k~~Wk~~f 79 (160)
T 2c0j_B 3 ADTVLFEFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRVGQALGERLP-RET--LAFREELDVLKFLCKDLWVAVF 79 (160)
T ss_dssp CCHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHHHHHHHHHHSC-GGG--GTTCCHHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHHhHHHHHHHh-hcc--CccCCHHHHHHHHHHHHHHHHh
Confidence 79999999999999999998763 567799999999999999999998 764 8999999999999999999999
Q ss_pred CccccccccccCCCCEEEEEcCCcccccceeccCCCC--CcchhhhhHHHHHHHHhhCCCceEEEEEe--CCceEEEEEe
Q psy8965 109 GKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQF 184 (193)
Q Consensus 109 gkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~--~l~~~~f~cGIIrGaL~~lG~~~~Vta~~--~~~~~f~Ikf 184 (193)
|||+|+|+ |||+|+|+|+||+|.+++|+|+|+++. .++|++|+||||||||+++||+|+||||+ .|+|+|+|||
T Consensus 80 gk~~d~L~--t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~Vta~~~~~p~~~f~i~~ 157 (160)
T 2c0j_B 80 QKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 157 (160)
T ss_dssp SSCCSEEE--ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEEEEEESSTTCEEEEEEC
T ss_pred CCcCccce--eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEEEEeecCCCceEEEEEe
Confidence 99999998 999999999999999999999999887 89999999999999999999999999999 8999999999
Q ss_pred ch
Q psy8965 185 DE 186 (193)
Q Consensus 185 ~~ 186 (193)
.+
T Consensus 158 ~~ 159 (160)
T 2c0j_B 158 PK 159 (160)
T ss_dssp CC
T ss_pred ec
Confidence 75
No 4
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=100.00 E-value=4.7e-53 Score=349.96 Aligned_cols=159 Identities=17% Similarity=0.246 Sum_probs=143.8
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhh
Q psy8965 29 KVKHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 108 (193)
Q Consensus 29 ~~~~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lF 108 (193)
+...+||+|+|+|||+|||+|++++.++.++++++|++|||+||.||+|++++|+. .+||.+++|+++||||++||++|
T Consensus 18 ~~~~eVs~s~f~lly~eiV~~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~-~~R~~d~le~l~fI~k~~Wk~lF 96 (200)
T 1sz7_A 18 TESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSN-VGRCHDFRETADVIAKVAFKMYL 96 (200)
T ss_dssp ----CCCSHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCSCCCHHHHHHHHHHTHHHHHH
T ss_pred cccchhcHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCHHHhHHHHHHHHhccC-CCccCCHHHHHHHHHHHHHHHHh
Confidence 34568999999999999999999999999999999999999999999999999984 58999999999999999999999
Q ss_pred CccccccccccCCCCEEEE-EcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe-----CCceEEEE
Q psy8965 109 GKECDKLERANDDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMI 182 (193)
Q Consensus 109 gkqaD~L~~~tn~~g~yvl-~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~-----~~~~~f~I 182 (193)
|||+|+|+ +||++|+|+| +|+||+.+ |+|+|++++.++|++|+||||||||+++||+|+|.+.. +++|+|+|
T Consensus 97 gk~ad~L~-~t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~Vta~~~~d~l~g~~~t~~~I 174 (200)
T 1sz7_A 97 GITPSITN-WSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRM 174 (200)
T ss_dssp SCCCEEEC-CCTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEEEEEEEEECGGGTCSSEEEEE
T ss_pred CCCCccce-ecCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCEEEEEEEecccCCCCCEEEEE
Confidence 99999996 5999999999 89999999 99999999999999999999999999999995554443 46899999
Q ss_pred Eechhhhh
Q psy8965 183 QFDEQVIA 190 (193)
Q Consensus 183 kf~~~v~~ 190 (193)
||+++|.+
T Consensus 175 kf~~~v~~ 182 (200)
T 1sz7_A 175 RFIRRIED 182 (200)
T ss_dssp EEEEEC--
T ss_pred EEhhhhhh
Confidence 99998865
No 5
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=1.7e-52 Score=336.33 Aligned_cols=149 Identities=23% Similarity=0.347 Sum_probs=126.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCChh----HHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhh
Q psy8965 33 DISINLYALLFSELVQYCQNKSLSVP----EFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIF 108 (193)
Q Consensus 33 ~Vs~s~f~~L~~EiV~~~~~~~~~~~----ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lF 108 (193)
-||.++|+|||+|||+|++++.++.+ +++++|++|||+||.||+|+++ |++ +||.+++|+++||||++|+++|
T Consensus 3 m~s~~~f~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~iG~rLiE~~~-r~~--~r~~~~ld~lkfI~k~~Wk~~f 79 (160)
T 2bjn_A 3 MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFT-KDT--ARFKDELDIMKFICKDFWTTVF 79 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHHHHHHHTTC------------CHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHhhHHHHHHHH-hcc--CccCCHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999987764 5799999999999999999998 765 8999999999999999999999
Q ss_pred CccccccccccCCCCEEEEEcCCcccccceeccCCCC--CcchhhhhHHHHHHHHhhCCCceEEEEEe--CCceEEEEEe
Q psy8965 109 GKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQF 184 (193)
Q Consensus 109 gkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~--~l~~~~f~cGIIrGaL~~lG~~~~Vta~~--~~~~~f~Ikf 184 (193)
|||+|+|+ |||+|+|+|+|++|.+++|+|+|+++. .++|++|+||||||||+++||+|+||||+ .|+|+|+|++
T Consensus 80 gk~~d~L~--t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta~~~~~p~~~F~i~~ 157 (160)
T 2bjn_A 80 KKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMI 157 (160)
T ss_dssp SSCCSEEE--EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEEEEEESSTTCEEEEEEE
T ss_pred CCCCcccc--cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEEEEEecCCCceEEEEEe
Confidence 99999998 999999999999999999999999874 89999999999999999999999999999 7999999999
Q ss_pred ch
Q psy8965 185 DE 186 (193)
Q Consensus 185 ~~ 186 (193)
.+
T Consensus 158 ~~ 159 (160)
T 2bjn_A 158 QK 159 (160)
T ss_dssp C-
T ss_pred cc
Confidence 75
No 6
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-53 Score=347.95 Aligned_cols=173 Identities=18% Similarity=0.274 Sum_probs=150.6
Q ss_pred ccccccCCCCccccCccCccCcccchHHHHHHHHHHHHH-HHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcc
Q psy8965 10 ISISIIQPKTSILDKPINTKVKHDISINLYALLFSELVQ-YCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKR 88 (193)
Q Consensus 10 ~~~~~~~~~~~i~~~~l~~~~~~~Vs~s~f~~L~~EiV~-~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R 88 (193)
|++...+.+..+|.. ...+||+|+|+|||+|||+ |++++.++.++++++|++|||+||.||+|++++|+. .+|
T Consensus 6 ~~~~~~~~~~~~~~~-----~~~~Vs~s~f~ll~~elV~q~~~~~~~~~~ev~~rLe~mGy~IG~RLiE~~~~r~~-~~R 79 (193)
T 3cue_D 6 QSRSLKAMGEEIWKN-----KTEKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTA-LPR 79 (193)
T ss_dssp --CHHHHHHHHHHSS-----SSCEEEHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCC
T ss_pred ccccccccchhhhcc-----chhhccHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhCHHHHHHHHHHHHhccC-CCc
Confidence 455444556667732 3458999999999999998 677777779999999999999999999999999984 589
Q ss_pred cccHHHHHHHHHHHHHHhhhCccccccccccCCCCEEEE-EcCCcccccceeccCCC-CCcchhhhhHHHHHHHHhhCCC
Q psy8965 89 EIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL-IEQESLVNKFISVPKDK-GSLNCAIFVAGIVEAVLNNCGF 166 (193)
Q Consensus 89 ~~~~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl-~D~~pl~~~~is~P~~~-~~l~~~~f~cGIIrGaL~~lG~ 166 (193)
|.+++|+++||||++||++||||+|+|+ +|||+|+|+| +|+||+.+ |+|+|+++ +.++|++|+||||||||+++||
T Consensus 80 ~~~~le~l~fI~k~~Wk~lfgk~~d~L~-~t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~ 157 (193)
T 3cue_D 80 CENLVKTSEVLSKCAFKIFLNITPNITN-WSHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL 157 (193)
T ss_dssp CSSHHHHHHHHHHHHHHHHSSCCCCCBC-CCTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCccce-ecCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999996 5999999999 99999999 99999988 8899999999999999999999
Q ss_pred ceEEEEEe-----CCceEEEEEechhhhh
Q psy8965 167 KSTVTAHW-----HKGTTYMIQFDEQVIA 190 (193)
Q Consensus 167 ~~~Vta~~-----~~~~~f~Ikf~~~v~~ 190 (193)
+|+|.++. +++|+|+|||+++|.+
T Consensus 158 ~Vta~~~~d~l~g~~~t~~~Ikf~~~v~d 186 (193)
T 3cue_D 158 DCDVWFVSDILRGDSQTEIKVKLNRILKD 186 (193)
T ss_dssp CCEEEECCCSSSSSSCBCEEEECCCCCSC
T ss_pred EEEEEEeeccCCCCCCEEEEEEEhhhhhc
Confidence 65554444 3579999999998865
No 7
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=94.81 E-value=0.065 Score=42.00 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=73.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHh-hhCc
Q psy8965 32 HDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKN-IFGK 110 (193)
Q Consensus 32 ~~Vs~s~f~~L~~EiV~~~~~~~~~~~ev~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~-lFgk 110 (193)
..|+.+.|.+|+..+-..+.....+.. |.+.||..|..+.+.++ +.+ +++|+. =+|.
T Consensus 26 ~~vp~~~f~~l~~~l~~~l~~~G~~~~-----L~~~G~~~G~~l~~~~~-------------~~l----~~~~~~~G~G~ 83 (163)
T 2oso_A 26 KKIPMPYFGLFALVIFDKVKELGSETS-----LYEIGEEFGKMLSPKNI-------------EEL----KKIFKLMNFGD 83 (163)
T ss_dssp CCCCHHHHHHHHHHHHHHHC--CCCCC-----HHHHHHHHHHHHCCSSH-------------HHH----HHHHHHHTCCE
T ss_pred CcccHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHH-------------HHH----HHHHHHcCceE
Confidence 578999999999887766544332222 89999999998865521 211 355654 1222
Q ss_pred ccccccccc---CCCCEEEE-EcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhC-CCceEEEEEe-----CCceEE
Q psy8965 111 ECDKLERAN---DDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC-GFKSTVTAHW-----HKGTTY 180 (193)
Q Consensus 111 qaD~L~~~t---n~~g~yvl-~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~l-G~~~~Vta~~-----~~~~~f 180 (193)
.+... . ..++.+++ ..++|.... | .+-.-++|.+|++.|+|+.+ |=+..|.-.. ++.|.|
T Consensus 84 -l~i~~--~~~~~~~~~~~i~v~~s~e~~~----~---~~~pvC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F 153 (163)
T 2oso_A 84 -LEIDE--NKILLKNPPYKIKLSNPPYQWV----S---KEEPIHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVF 153 (163)
T ss_dssp -EECCH--HHHHHSCSCEEEEEESCSCTTC----C---CSSCCCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEE
T ss_pred -EEEEe--ccccccCCcEEEEEEeCceeec----C---CCCceeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEE
Confidence 11111 1 12345544 556654431 2 12234788899999999875 5555443333 789999
Q ss_pred EEEechh
Q psy8965 181 MIQFDEQ 187 (193)
Q Consensus 181 ~Ikf~~~ 187 (193)
.++..+.
T Consensus 154 ~~~~~~~ 160 (163)
T 2oso_A 154 EVKEVDE 160 (163)
T ss_dssp EEEEEC-
T ss_pred EEEEHHH
Confidence 9998653
No 8
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=77.28 E-value=4 Score=32.21 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=51.5
Q ss_pred cccccHHHHHHHHHHHHHHhhhCccccccccccCCCCEEEEE--cCCcccccceeccCCCCCcchhhhhHHHHHHHHhhC
Q psy8965 87 KREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLI--EQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNC 164 (193)
Q Consensus 87 ~R~~~~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl~--D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~l 164 (193)
.-..++|.-+.-|+..+=+.+ -.++ .=.|... +.+-+...|-| |. --++.++.|+|+|+-+..
T Consensus 92 ~~l~dFL~~ld~lH~~v~~~y-----p~~~-----~Psf~~~~~~~~~l~l~Y~S-~R----~gl~~~~~Gli~~~A~~f 156 (189)
T 3tfg_A 92 DSLPEFMENLDNLHARVGLSF-----PQLR-----PPAFECQHTSSKSMELHYQS-TR----CGLAPMVLGLLHGLGKRF 156 (189)
T ss_dssp SSHHHHHHHHHHHHHHHHHHS-----TTCC-----CCEEEEEEEETTEEEEEEEC-SS----SSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHhHHHHHHHHHHhC-----CCCC-----CCeEEEEECCCCEEEEEEEC-CC----CCHHHHHHHHHHHHHHHh
Confidence 345567777777776544432 1122 1134332 23334444655 21 125789999999999987
Q ss_pred CCceEEEEEe-----CCceEEEEEechh
Q psy8965 165 GFKSTVTAHW-----HKGTTYMIQFDEQ 187 (193)
Q Consensus 165 G~~~~Vta~~-----~~~~~f~Ikf~~~ 187 (193)
|-+++|+-.. .+.|+|.|.+.++
T Consensus 157 ~~~v~i~~~~~~~~~~~h~~f~i~~~~~ 184 (189)
T 3tfg_A 157 QTKVEVTQTAFRETGEDHDIFSIKYEDS 184 (189)
T ss_dssp TCEEEEEEEECTTTTSSSEEEEEEEEC-
T ss_pred CCCeEEEEEeccCCCCCeEEEEEEECCC
Confidence 7776666554 3579999999865
No 9
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=67.26 E-value=11 Score=29.47 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=31.6
Q ss_pred hhhhhHHHHHHHHhhCCCceEEEEEe-----CCceEEEEEech
Q psy8965 149 CAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQFDE 186 (193)
Q Consensus 149 ~~~f~cGIIrGaL~~lG~~~~Vta~~-----~~~~~f~Ikf~~ 186 (193)
...|+.|+|+|+-+.+|-+.+|+-.. ...++|.|+++.
T Consensus 138 l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 138 LCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN 180 (181)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence 67899999999999999888887533 357999999864
No 10
>2vqg_A Uncharacterized protein CGL0972; transmembrane, membrane protein, porin, membrane, transport, transport; HET: GVT; 1.82A {Corynebacterium glutamicum} PDB: 2vqh_A 2vqk_A 2vql_A
Probab=65.23 E-value=3.5 Score=29.74 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=17.5
Q ss_pred chhhhhHHHHHHHHhhCCCc
Q psy8965 148 NCAIFVAGIVEAVLNNCGFK 167 (193)
Q Consensus 148 ~~~~f~cGIIrGaL~~lG~~ 167 (193)
++-+..||++||+|...|+.
T Consensus 16 ~~dwv~Cgiv~t~L~~~gl~ 35 (99)
T 2vqg_A 16 QYNWVACGILEGGLKAAGVL 35 (99)
T ss_dssp GGSHHHHHHHHHHHHHTTCC
T ss_pred ccCcccccHHHHHHHHhhcC
Confidence 56788899999999999885
No 11
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=51.57 E-value=83 Score=24.45 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=61.9
Q ss_pred HHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHHHHHHHhhhCccccccccccCCCCEEEE--EcCCcccccce
Q psy8965 61 QSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVKINLWKNIFGKECDKLERANDDERTYYL--IEQESLVNKFI 138 (193)
Q Consensus 61 ~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl--~D~~pl~~~~i 138 (193)
++-|+..|...=..+.+.+ -+-=...-..++|.-|.-|+..+=+ .| -.++ -=.|-. .+.+-+...|-
T Consensus 64 ~~ll~~fG~~~~~~~~~~y-~~~l~g~~~~dFL~~ld~lH~~v~~-~y----p~~~-----~Psf~~~~~~~~~l~l~Y~ 132 (188)
T 3sj5_A 64 NEIWREVGRQNIKTFSEWF-PSYFAGRRLVNFLMMMDEVHLQLTK-MI----KGAT-----PPRLIAKPVAKDAIEMEYV 132 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHC-GGGTTTCCHHHHHHTHHHHHHHTTT-TS----TTCC-----CCEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHhCCCCHHHHHHHHHHHHHHHHH-hC----CCCC-----CCeEEEEECCCCEEEEEEE
Confidence 3447777777644444442 1110013444555555555554322 22 2222 112422 23333444466
Q ss_pred eccCCCCCcchhhhhHHHHHHHHhhCCCceEEEEEe--C----CceEEEEEechhh
Q psy8965 139 SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW--H----KGTTYMIQFDEQV 188 (193)
Q Consensus 139 s~P~~~~~l~~~~f~cGIIrGaL~~lG~~~~Vta~~--~----~~~~f~Ikf~~~v 188 (193)
| | . -++.++.|+|+||-+-.|-+++|+-.. . ...+|+|+|+...
T Consensus 133 S-~----R-gl~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~ 182 (188)
T 3sj5_A 133 S-K----R-KMYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPV 182 (188)
T ss_dssp E-T----T-CCHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCC
T ss_pred C-C----C-CHHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChh
Confidence 6 2 2 458899999999999999998886554 1 2569999998653
No 12
>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A
Probab=36.36 E-value=32 Score=24.54 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhCccccccccccCCCCEEEEEcCCcccccceeccCCCCCcchhhhhHHHHHHHHhhCCCce
Q psy8965 97 QFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKS 168 (193)
Q Consensus 97 kFIck~~Wk~lFgkqaD~L~~~tn~~g~yvl~D~~pl~~~~is~P~~~~~l~~~~f~cGIIrGaL~~lG~~~ 168 (193)
.|+.| +|.++=.-..+.+-.|+.+...|+|.|..-+.. - -+|.-...-++++|+. =|..-||.-
T Consensus 6 ~F~~K-L~~mv~d~~~~~iI~W~~~G~sFvI~d~~~F~~-~-vLp~yFkh~n~~SFvR-----QLN~YGF~K 69 (106)
T 1hks_A 6 AFLAK-LWRLVDDADTNRLICWTKDGQSFVIQNQAQFAK-E-LLPLNYKHNNMASFIR-----QLNMYGFHK 69 (106)
T ss_dssp TTHHH-HHHHHSSSTTTTTSEESTTTSCEECSCCSTTTT-T-TSTTTTSCCCHHHHHH-----HHHHHCCCC
T ss_pred cHHHH-HHHHhcCCCCCCEEEEeCCCCEEEECCHHHHHH-H-HhHHhcCCCcHHHHHH-----hhhcCCCeE
Confidence 47777 899987766555556888888999988763322 1 2466555667888854 367777763
No 13
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=27.41 E-value=72 Score=21.60 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhc-CChhHHHHHHHHhhhhhhHHHHHHHh
Q psy8965 41 LLFSELVQYCQNKS-LSVPEFQSKLHEVGQSIGAKLIDINF 80 (193)
Q Consensus 41 ~L~~EiV~~~~~~~-~~~~ev~~kLe~~G~~VG~rL~E~l~ 80 (193)
-||-+.|++..... -+++-+ ++=-++||+=..||+|.+-
T Consensus 10 ~Ly~~A~~~V~~~~~aS~S~l-QR~lrIGYnRAArlid~lE 49 (73)
T 2ve8_A 10 PLYDEAVRFVTESRRASISAV-QRKLKIGYNRAARMIEAME 49 (73)
T ss_dssp TTHHHHHHHHHHHCCCCHHHH-HHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHH-HHHHccChHHHHHHHHHHH
Confidence 37788888866654 355555 5555799999999999985
No 14
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=23.47 E-value=94 Score=19.31 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCh-hHHHHHHHHhhhhh
Q psy8965 44 SELVQYCQNKSLSV-PEFQSKLHEVGQSI 71 (193)
Q Consensus 44 ~EiV~~~~~~~~~~-~ev~~kLe~~G~~V 71 (193)
-.+.+.++.+.... +++-.|+++||-+|
T Consensus 12 q~LL~qmq~kFq~mS~~I~~riDdM~~RI 40 (48)
T 3ci9_A 12 QTLLQQMQDKFQTISDQIIGRIDDMSSRI 40 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444455554333 45778888888765
No 15
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=22.36 E-value=33 Score=23.84 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=12.3
Q ss_pred hhHHHHHHHHhhhhh
Q psy8965 57 VPEFQSKLHEVGQSI 71 (193)
Q Consensus 57 ~~ev~~kLe~~G~~V 71 (193)
.--+-.|||.+||+|
T Consensus 52 Pr~VLnKLE~~G~rV 66 (83)
T 1jg5_A 52 PRIVLDKLECRGFRV 66 (83)
T ss_dssp HHHHHHHHHHTTCEE
T ss_pred hHHHHHHHhccCeEE
Confidence 346789999999985
No 16
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=22.00 E-value=19 Score=31.21 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhc--------CChhHHHHHHHHhhhhhhHHHHH
Q psy8965 42 LFSELVQYCQNKS--------LSVPEFQSKLHEVGQSIGAKLID 77 (193)
Q Consensus 42 L~~EiV~~~~~~~--------~~~~ev~~kLe~~G~~VG~rL~E 77 (193)
+.+++|++..++- ++.+|+.++|+++|+..|.++-.
T Consensus 277 tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~~~gl~l~~~~~~ 320 (329)
T 3lu0_A 277 YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLEN 320 (329)
T ss_dssp --------------------------------------------
T ss_pred CHHHHhhCCHHHHhhCcCCChhhHHHHHHHHHHcCCCcCCcccc
Confidence 4666777654432 36688999999999999987643
No 17
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=20.73 E-value=1.7e+02 Score=19.17 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=31.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHhhhccCCcccccHHHHHHHHH--HHHHHh
Q psy8965 60 FQSKLHEVGQSIGAKLIDINFYREKNGKREIKLLNILQFVK--INLWKN 106 (193)
Q Consensus 60 v~~kLe~~G~~VG~rL~E~l~~r~~~~~R~~~~ld~lkFIc--k~~Wk~ 106 (193)
+-..-|.-|-+|-.-++|.+.. .|.....++|.+|- +.+||.
T Consensus 12 vLDlYe~SnIrIP~DIIEdl~~-----~~L~te~EVmnYiEnqR~~WKL 55 (67)
T 2bnk_A 12 VLDLYEQSNIRIPSDIIEDLVN-----QRLQSEQEVLNYIETQRTYWKL 55 (67)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHT-----TCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCcHHHHHHHHH-----HhhhhHHHHHHHHHhhHhHHhh
Confidence 3445667788999999999972 45666778999984 789985
No 18
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=20.24 E-value=55 Score=23.37 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHhhCCCceEEEEE
Q psy8965 151 IFVAGIVEAVLNNCGFKSTVTAH 173 (193)
Q Consensus 151 ~f~cGIIrGaL~~lG~~~~Vta~ 173 (193)
.+.+.++++.|++.|++|.|.=+
T Consensus 32 ~v~a~~~k~LLe~aGI~~fv~De 54 (97)
T 2hfv_A 32 AVLLSAVGALLDGADIGHLVLDQ 54 (97)
T ss_dssp HHHHHHHHHHHHHTTCCEECCSC
T ss_pred HHHHHHHHHHHHhCCCCEEEcCC
Confidence 45689999999999999998544
Done!