RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8965
         (193 letters)



>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking
           protein particle complex 5 {Zebrafish (Brachydanio
           rerio) [TaxId: 7955]}
          Length = 168

 Score =  197 bits (503), Expect = 7e-66
 Identities = 100/163 (61%), Positives = 133/163 (81%)

Query: 31  KHDISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREI 90
           K ++S++ +ALLFSE+VQYCQ++  SV E Q++L ++GQ +GA L+D+   REKNGKRE 
Sbjct: 1   KTEVSVSAFALLFSEMVQYCQSRVYSVSELQARLADMGQGVGASLLDVLVMREKNGKRET 60

Query: 91  KLLNILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA 150
           K+LNIL F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA
Sbjct: 61  KVLNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCA 120

Query: 151 IFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQVIARDK 193
            F  GIVEA+L + GF + VT HWHKGTT MI+FDE VIARDK
Sbjct: 121 AFTGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDESVIARDK 163


>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit
           3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 161

 Score =  131 bits (331), Expect = 8e-40
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 34  ISINLYALLFSELVQYCQNKSLSVPEFQSKLHEVGQSIGAKLIDINFYREKNGKREIKLL 93
           +S  L+ L +  LV        +  +   +L  +G +IG +LI+ +F    N  R     
Sbjct: 3   MSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIE-DFLARSNVGRCHDFR 61

Query: 94  NILQFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFV 153
                +    +K   G         +     + LI + + +  F+ +P +  +L  +  +
Sbjct: 62  ETADVIAKVAFKMYLGITPSITNW-SPAGDEFSLILENNPLVDFVELPDNHSALIYSNLL 120

Query: 154 AGIVEAVLNNCGFKSTVTAHWHK-----GTTYMIQFDEQV 188
            G++   L                     T   ++F  ++
Sbjct: 121 CGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRI 160


>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
           subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 288

 Score = 25.4 bits (55), Expect = 5.3
 Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 3/88 (3%)

Query: 102 NLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVL 161
           ++      +  D+L+    +     L+  +        +           F   I E   
Sbjct: 168 SIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWGISPRGAGYT---FGQDISETFN 224

Query: 162 NNCGFKSTVTAHWHKGTTYMIQFDEQVI 189
           +  G      AH      Y    D  V+
Sbjct: 225 HANGLTLVSRAHQLVMEGYNWCHDRNVV 252


>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 89

 Score = 23.7 bits (50), Expect = 7.5
 Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 5/53 (9%)

Query: 44 SELVQYCQNKSLSVPEFQSKLHEVGQS-----IGAKLIDINFYREKNGKREIK 91
          S L Q  Q +    P++               +  K+ +         K+  K
Sbjct: 10 SRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAK 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 677,168
Number of extensions: 29036
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 7
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)