BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8966
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 90/159 (56%), Gaps = 10/159 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H R H+G +PYKCP C K+FS + H RTHTGEKPY+C C KSF +L+
Sbjct: 40 HQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRA 95
Query: 62 HVRTHTGK--YTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI 119
H RTHTG+ Y S + H R H+G +PYKCP C K+FS + + H
Sbjct: 96 HQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQ 153
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTA 158
RTHTGEKPY+C C KSF L H RTHTGK T+
Sbjct: 154 RTHTGEKPYKCPE--CGKSFSRRDALNVHQRTHTGKKTS 190
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 86/162 (53%), Gaps = 16/162 (9%)
Query: 5 IHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR 64
+ G +PY CP C K+FS H RTHTGEKPY+C C KSF DL +H R
Sbjct: 15 LEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQR 70
Query: 65 THTGKY-----TPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI 119
THTG+ G R +R H R H+G +PY CP C K+FS +AH
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLR---AHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQ 125
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTAEVP 161
RTHTGEKPY+C C KSF +L H RTHTG+ + P
Sbjct: 126 RTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKCP 165
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYT 71
Y C C A++ + +AH+ HTGEKP+ C E C K F + L +H THTG+
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 72 ---PGPGIDSRLIVREDF-VHL-RIHS-GIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
G D R + + H R H+ I Y C E C KAF K H +HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
PY C HE C K F L++H + H G
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK-- 155
Y C C A++ + +AH+ HTGEKP+ C E C K F + L +H THTG+
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 156 YTAEVPGSIL 165
+T + G L
Sbjct: 73 FTCDSDGCDL 82
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 38
VH H+ PY+CP E C+K FS K H + H G
Sbjct: 124 VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 70/151 (46%), Gaps = 30/151 (19%)
Query: 5 IHSGIRPYKCPVEYCEKA---FSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
IH + + C C + F QY H+R HTGEKP++C E C KS+ +L+
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKT 87
Query: 62 HVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAH-IR 120
H+R+HTG+ +PY C E C KAFS R H R
Sbjct: 88 HLRSHTGE--------------------------KPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 121 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 151
TH+ EKPY C C+K + L+KHV+T
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 25/121 (20%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
VH+R H+G +P+KC E C K++S + K H+R+HTGEKPY C HE CSK+F + D
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
KH R HS +PY C + C K ++ S + H++
Sbjct: 117 KHQN-------------------------RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 121 T 121
T
Sbjct: 152 T 152
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 86 FVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDL 145
VH+R H+G +P+KC E C K++S + K H+R+HTGEKPY C HE CSK+F + D
Sbjct: 56 VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDR 115
Query: 146 QKHV-RTHTGK--YTAEVPG 162
KH RTH+ + Y ++PG
Sbjct: 116 AKHQNRTHSNEKPYVCKLPG 135
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 28/146 (19%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 66
S RP+ C C K + + H R HTGEKPY+C + C + F S L++H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 67 TGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
TG ++P++C C++ FS K H RTHTGEK
Sbjct: 62 TG--------------------------VKPFQCKT--CQRKFSRSDHLKTHTRTHTGEK 93
Query: 127 PYRCAHEFCSKSFKTSGDLQKHVRTH 152
P+ C C K F S +L +H H
Sbjct: 94 PFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
S RP+ C C K + + H R HTGEKPY+C + C + F S L++H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 153 TG 154
TG
Sbjct: 62 TG 63
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 13/117 (11%)
Query: 44 CAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFV-------HLRIHSGIR 96
C H+ C+K F+ + ++KH+ TH GP + + FV H +H+G +
Sbjct: 8 CPHKGCTKMFRDNSAMRKHLHTH------GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 97 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
P++C E C K FS ++ + H+R HTG++PY C + C+K F S +L+ H+ TH
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H +H+G +P++C E C K FS ++ + H+R HTG++PY C + C+K F S +L+
Sbjct: 53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 62 HVRTHT 67
H+ TH
Sbjct: 113 HILTHA 118
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 54/125 (43%), Gaps = 29/125 (23%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
HL H G R + C C KAF K H HTGEKP++C E C K F +L+
Sbjct: 26 HLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 62 HVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT 121
HV RIH+G RPY CP + C K F+ + K+HI T
Sbjct: 83 HV--------------------------RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 122 HTGEK 126
H K
Sbjct: 117 HAKAK 121
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
R CP + C K F + + H+ TH G + + CA C K+F S L++H HTG+
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGE 60
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 58/117 (49%), Gaps = 32/117 (27%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
EKPY+C C KSF S +LQKH RTHTG+ +PY
Sbjct: 2 EKPYKCPE--CGKSFSQSSNLQKHQRTHTGE--------------------------KPY 33
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KCP C K+FS + H RTHTGEKPY+C C KSF S L +H RTH K
Sbjct: 34 KCPE--CGKSFSQSSDLQKHQRTHTGEKPYKCPE--CGKSFSRSDHLSRHQRTHQNK 86
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 58/117 (49%), Gaps = 32/117 (27%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
+PYKCP C K+FS + + H RTHTGEKPY+C C KSF S DLQKH RTHTG+
Sbjct: 3 KPYKCPE--CGKSFSQSSNLQKHQRTHTGEKPYKCPE--CGKSFSQSSDLQKHQRTHTGE 58
Query: 70 YTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+PYKCP C K+FS H RTH +K
Sbjct: 59 --------------------------KPYKCPE--CGKSFSRSDHLSRHQRTHQNKK 87
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 43/66 (65%), Gaps = 4/66 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+PYKCP C K+FS + + H RTHTGEKPY+C C KSF S DLQKH RTHTG+
Sbjct: 3 KPYKCPE--CGKSFSQSSNLQKHQRTHTGEKPYKCPE--CGKSFSQSSDLQKHQRTHTGE 58
Query: 156 YTAEVP 161
+ P
Sbjct: 59 KPYKCP 64
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H R H+G +PYKCP C K+FS + H RTHTGEKPY+C C KSF S L +
Sbjct: 23 HQRTHTGEKPYKCPE--CGKSFSQSSDLQKHQRTHTGEKPYKCPE--CGKSFSRSDHLSR 78
Query: 62 HVRTHTGK 69
H RTH K
Sbjct: 79 HQRTHQNK 86
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 17/128 (13%)
Query: 49 CSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVRED--------------FVHLRIHSG 94
C ++F T +L HV T ++ GP ++ + E+ H+R+H+G
Sbjct: 31 CDRTFSTMHELVTHV---TMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+P+ CP C K F+ + K H RTHTGEKP++C E C + F S D +KH+ HT
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Query: 155 KYTAEVPG 162
+ G
Sbjct: 148 DKSGPSSG 155
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+R+H+G +P+ CP C K F+ + K H RTHTGEKP++C E C + F S D +K
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Query: 62 HVRTHT 67
H+ HT
Sbjct: 141 HMHVHT 146
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 28/114 (24%)
Query: 13 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTP 72
+CP E K+F +Y HIR HTGEKP+ C C K F S +L+ H RTHTG+
Sbjct: 64 ECPREG--KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE--- 118
Query: 73 GPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+P+KC E C++ F+ RK H+ HT +K
Sbjct: 119 -----------------------KPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+H R H+G +P+KC E C++ F+ RK H+ HT +K
Sbjct: 110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 30/117 (25%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS + + HIR HTG+KP++C C ++F L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQQASLNAHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+P+ C + C + F+T ++R H + H +K
Sbjct: 61 --------------------------KPFACDI--CGRKFATLHTRTRHTKIHLRQK 89
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS + + HIR HTG+KP++C C ++F L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQQASLNAHIRTHTGE 60
Query: 156 --YTAEVPGSILDCLSGRFR 173
+ ++ G L R R
Sbjct: 61 KPFACDICGRKFATLHTRTR 80
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F +L H+RIH+G +P+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLD--------------------------THIRIHTGQKPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS Q S AHIRTHTGEKP+ C + C + F T +H + H
Sbjct: 36 QCRI--CMRNFSQQASLNAHIRTHTGEKPFAC--DICGRKFATLHTRTRHTKIH 85
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H+RIH+G +P++C + C + FS Q S AHIRTHTGEKP+ C + C + F T
Sbjct: 24 THIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTGEKPFAC--DICGRKFATLHTRT 79
Query: 61 KHVRTH 66
+H + H
Sbjct: 80 RHTKIH 85
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F +L H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ 32
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 30/117 (25%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS + + HIR HTG+KP++C C ++F L +H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQHTGLNQHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+P+ C + C + F+T ++R H + H +K
Sbjct: 61 --------------------------KPFACDI--CGRKFATLHTRDRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS + + HIR HTG+KP++C C ++F L +H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQHTGLNQHIRTHTGE 60
Query: 156 --YTAEVPGSILDCLSGRFR 173
+ ++ G L R R
Sbjct: 61 KPFACDICGRKFATLHTRDR 80
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F +L H+RIH+G +P+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLD--------------------------THIRIHTGQKPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS HIRTHTGEKP+ C + C + F T +H + H
Sbjct: 36 QCRI--CMRNFSQHTGLNQHIRTHTGEKPFAC--DICGRKFATLHTRDRHTKIH 85
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H+RIH+G +P++C + C + FS HIRTHTGEKP+ C + C + F T
Sbjct: 24 THIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTGEKPFAC--DICGRKFATLHTRD 79
Query: 61 KHVRTH 66
+H + H
Sbjct: 80 RHTKIH 85
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F +L H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ 32
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS S HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVRED 85
I R R D
Sbjct: 61 KPFACDICGRKFARSD 76
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS S HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F SG L +H+R IH+G +P+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIR--------------------------IHTGQKPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS HIRTHTGEKP+ C + C + F S + ++H + H
Sbjct: 36 QCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+RIH+G +P++C + C + FS HIRTHTGEKP+ C + C + F S + ++
Sbjct: 25 HIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 80
Query: 62 HVRTH 66
H + H
Sbjct: 81 HTKIH 85
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F SG L +H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ 32
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS + HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVRED 85
I R R D
Sbjct: 61 KPFACDICGRKFARSD 76
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS + HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F S +L +H+R IH+G +P+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIR--------------------------IHTGQKPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS HIRTHTGEKP+ C + C + F S + ++H + H
Sbjct: 36 QCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+RIH+G +P++C + C + FS HIRTHTGEKP+ C + C + F S + ++
Sbjct: 25 HIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 80
Query: 62 HVRTH 66
H + H
Sbjct: 81 HTKIH 85
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F S +L +H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQ 32
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVRED 85
I R R D
Sbjct: 61 KPFACDICGRKFARSD 76
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F S DL +H+R IH+G +P+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIR--------------------------IHTGQKPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS HIRTHTGEKP+ C + C + F S + ++H + H
Sbjct: 36 QCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+RIH+G +P++C + C + FS HIRTHTGEKP+ C + C + F S + ++
Sbjct: 25 HIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 80
Query: 62 HVRTH 66
H + H
Sbjct: 81 HTKIH 85
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F S DL +H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQ 32
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVRED 85
I R R D
Sbjct: 61 KPFACDICGRKFARSD 76
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F S +L +H+R IH+G +P+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIR--------------------------IHTGQKPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS HIRTHTGEKP+ C + C + F S + ++H + H
Sbjct: 36 QCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+RIH+G +P++C + C + FS HIRTHTGEKP+ C + C + F S + ++
Sbjct: 25 HIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 80
Query: 62 HVRTH 66
H + H
Sbjct: 81 HTKIH 85
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F S +L +H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQ 32
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVRED 85
I R R D
Sbjct: 61 KPFACDICGRKFARSD 76
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F S +L +H+R IH+G +P+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR--------------------------IHTGQKPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS HIRTHTGEKP+ C + C + F S + ++H + H
Sbjct: 36 QCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIH 85
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+RIH+G +P++C + C + FS HIRTHTGEKP+ C + C + F S + ++
Sbjct: 25 HIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 80
Query: 62 HVRTH 66
H + H
Sbjct: 81 HTKIH 85
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F S +L +H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ 32
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 59
Query: 70 YTPGPGIDSRLIVRED 85
I R R D
Sbjct: 60 KPFACDICGRKFARSD 75
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 59
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F S +L +H+R IH+G +P+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIR--------------------------IHTGQKPF 34
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS HIRTHTGEKP+ C + C + F S + ++H + H
Sbjct: 35 QCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIH 84
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+RIH+G +P++C + C + FS HIRTHTGEKP+ C + C + F S + ++
Sbjct: 24 HIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 79
Query: 62 HVRTH 66
H + H
Sbjct: 80 HTKIH 84
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F S +L +H+R HTG+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ 31
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVRED 85
I R R D
Sbjct: 61 KPFACDICGRKFARSD 76
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 30/114 (26%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F S +L +H+R IH+G +P+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIR--------------------------IHTGQKPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+C + C + FS HIRTHTGEKP+ C + C + F S + ++H + H
Sbjct: 36 QCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+RIH+G +P++C + C + FS HIRTHTGEKP+ C + C + F S + ++
Sbjct: 25 HIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 80
Query: 62 HVRTH 66
H + H
Sbjct: 81 HTKIH 85
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C E C + F S +L +H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ 32
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 67
+RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 73
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
+RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 73
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 28/84 (33%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYK 99
+PY C E C + F S +L +H+R IH+G +P++
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIR--------------------------IHTGQKPFQ 51
Query: 100 CPVEYCEKAFSTQYSRKAHIRTHT 123
C + C + FS HIRTHT
Sbjct: 52 CRI--CMRNFSRSDHLTTHIRTHT 73
Score = 34.3 bits (77), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+PY C E C + F S +L +H+R HTG+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ 47
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 37
H+RIH+G +P++C + C + FS HIRTHT
Sbjct: 40 HIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
R + C C K ++ KAH+RTHTGEKPY+C E C F S +L +H R HTG
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 70 YTPGPGIDSRLIVREDFVHLRIH 92
G+ +R R D HL +H
Sbjct: 74 KPFQCGVCNRSFSRSD--HLALH 94
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
R + C C K ++ KAH+RTHTGEKPY+C E C F S +L +H R HTG
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
HLR H+G +PYKC E C+ F+ H R HTG KP++C C++SF S L
Sbjct: 35 AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG--VCNRSFSRSDHLA 92
Query: 61 KHVRTH 66
H++ H
Sbjct: 93 LHMKRH 98
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
HLR H+G +PYKC E C+ F+ H R HTG KP++C C++SF S L
Sbjct: 35 AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG--VCNRSFSRSDHLA 92
Query: 147 KHVRTH 152
H++ H
Sbjct: 93 LHMKRH 98
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
HL IHS RPY P +YC K F + K H HTGEKP++C + C K+F S +L
Sbjct: 19 THLLIHSDTRPY--PCQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLI 74
Query: 61 KHVRTHTG 68
H R HTG
Sbjct: 75 THSRKHTG 82
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
HL IHS RPY P +YC K F + K H HTGEKP++C + C K+F S +L
Sbjct: 19 THLLIHSDTRPY--PCQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLI 74
Query: 147 KHVRTHTG 154
H R HTG
Sbjct: 75 THSRKHTG 82
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 30/108 (27%)
Query: 17 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGI 76
+ C K+F + H+ H+ +PY C ++C K F D++KH HTG+
Sbjct: 5 KICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGE------- 55
Query: 77 DSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 124
+P+KC V C KAFS + H R HTG
Sbjct: 56 -------------------KPHKCQV--CGKAFSQSSNLITHSRKHTG 82
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 103 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+ C K+F + H+ H+ +PY C ++C K F D++KH HTG+
Sbjct: 5 KICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGE 55
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H+R H+G++PYKC + C+ A + S H+R H+ E+P++C + C + + S L
Sbjct: 26 THMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLT 81
Query: 61 KHVRTHTGKYTPGPG 75
H+R+HTG P G
Sbjct: 82 VHLRSHTGDSGPSSG 96
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
H+R H+G++PYKC + C+ A + S H+R H+ E+P++C + C + + S L
Sbjct: 26 THMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLT 81
Query: 147 KHVRTHTG 154
H+R+HTG
Sbjct: 82 VHLRSHTG 89
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 32/115 (27%)
Query: 11 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKY 70
P+KC E C K FS + K H+R HTG KPY+C + C + S L K
Sbjct: 8 PHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNK--------- 54
Query: 71 TPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
HLRIHS RP+KC + C A H+R+HTG+
Sbjct: 55 -----------------HLRIHSDERPFKCQI--CPYASRNSSQLTVHLRSHTGD 90
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 97 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
P+KC E C K FS + K H+R HTG KPY+C + C + S L KH+R H+
Sbjct: 8 PHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHS 60
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 32/149 (21%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 66
SG +CP C K F ++Y K H R HTGEKP+ C C K + +L +H +
Sbjct: 3 SGSSGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARN 58
Query: 67 TGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+ R + V + C V C++ F + + H+ +HTGE
Sbjct: 59 C-------------MNRSEQV----------FTCSV--CQETFRRRMELRLHMVSHTGEM 93
Query: 127 PYRCAHEFCSKSFKTSGDLQKH-VRTHTG 154
PY+C+ CS+ F DLQ H ++ H+G
Sbjct: 94 PYKCSS--CSQQFMQKKDLQSHMIKLHSG 120
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 32/98 (32%)
Query: 1 VHLRIHSGIRPYKCP-----------------------------VEYCEKAFSTQYSRKA 31
VH R H+G +P++CP C++ F + +
Sbjct: 25 VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRL 84
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKH-VRTHTG 68
H+ +HTGE PY+C+ CS+ F DLQ H ++ H+G
Sbjct: 85 HMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIKLHSG 120
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 14 CPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPG 73
C C K ++ KAH+RTHTGEKPY C + C F S +L +H R HTG
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH---- 64
Query: 74 PGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 122
RP++C + C++AFS H++ H
Sbjct: 65 ----------------------RPFQC--QKCDRAFSRSDHLALHMKRH 89
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 100 CPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
C C K ++ KAH+RTHTGEKPY C + C F S +L +H R HTG
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 63
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
HLR H+G +PY C + C F+ H R HTG +P++C + C ++F S L
Sbjct: 26 AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRSDHLA 83
Query: 61 KHVRTH 66
H++ H
Sbjct: 84 LHMKRH 89
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
HLR H+G +PY C + C F+ H R HTG +P++C + C ++F S L
Sbjct: 26 AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRSDHLA 83
Query: 147 KHVRTH 152
H++ H
Sbjct: 84 LHMKRH 89
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 130 CAHEFCSKSFKTSGDLQKHVRTHTGK 155
C + C K++ S L+ H+RTHTG+
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGE 34
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
HL H+G +P+ C E CEK F++ + H THTGEK + C + C F T +++
Sbjct: 23 AHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMK 82
Query: 61 KHVR 64
KH
Sbjct: 83 KHFN 86
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
HL H+G +P+ C E CEK F++ + H THTGEK + C + C F T +++
Sbjct: 23 AHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMK 82
Query: 147 KHVR 150
KH
Sbjct: 83 KHFN 86
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYT 71
Y C C A++ + +AH+ HTGEKP+ C E C K F + L +H THTG+
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 72 ---PGPGIDSRLIVREDF 86
G D R + +
Sbjct: 64 FTCDSDGCDLRFTTKANM 81
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK-- 155
Y C C A++ + +AH+ HTGEKP+ C E C K F + L +H THTG+
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 156 YTAEVPGSIL 165
+T + G L
Sbjct: 64 FTCDSDGCDL 73
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 28/109 (25%)
Query: 14 CPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPG 73
C C K ++ KAH+RTHTGEKPY C + C F S +L +H R HTG
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH---- 63
Query: 74 PGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 122
RP++C + C++AFS H++ H
Sbjct: 64 ----------------------RPFQC--QKCDRAFSRSDHLALHMKRH 88
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%)
Query: 100 CPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
C C K ++ KAH+RTHTGEKPY C + C F S +L +H R HTG
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
HLR H+G +PY C + C F+ H R HTG +P++C + C ++F S L
Sbjct: 25 AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRSDHLA 82
Query: 61 KHVRTH 66
H++ H
Sbjct: 83 LHMKRH 88
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
HLR H+G +PY C + C F+ H R HTG +P++C + C ++F S L
Sbjct: 25 AHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QKCDRAFSRSDHLA 82
Query: 147 KHVRTH 152
H++ H
Sbjct: 83 LHMKRH 88
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 147
H+ +H G+RPY C V C K F ++ H++ HTG KPY C C+K F +
Sbjct: 28 HMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYEC--NICAKRFMWRDSFHR 83
Query: 148 HVRTHTGKYTA 158
HV + T Y A
Sbjct: 84 HVTSCTKSYEA 94
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+ +H G+RPY C V C K F ++ H++ HTG KPY C C+K F +
Sbjct: 28 HMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYEC--NICAKRFMWRDSFHR 83
Query: 62 HVRTHTGKY 70
HV + T Y
Sbjct: 84 HVTSCTKSY 92
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 33/117 (28%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 66
SG + Y C C K+F+ + R H+ H G +PY C C K FK ++ H+
Sbjct: 6 SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFK----MKHHL--- 53
Query: 67 TGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 123
H++IH+GI+PY+C + C K F + S H+ + T
Sbjct: 54 -------------------VGHMKIHTGIKPYECNI--CAKRFMWRDSFHRHVTSCT 89
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 71 TPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+ GP IDS S IR + C C K + KAH RTHTGEKP+ C
Sbjct: 5 SSGPQIDS--------------SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC 50
Query: 131 AHEFCSKSFKTSGDLQKHVRTH 152
+ + C + F S +L +H RTH
Sbjct: 51 SWKGCERRFARSDELSRHRRTH 72
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 66
IR + C C K + KAH RTHTGEKP+ C+ + C + F S +L +H RTH
Sbjct: 15 IRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 26/79 (32%)
Query: 44 CAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVE 103
C+H C K++ S L+ H RTHTG+ +P+ C +
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGE--------------------------KPFSCSWK 53
Query: 104 YCEKAFSTQYSRKAHIRTH 122
CE+ F+ H RTH
Sbjct: 54 GCERRFARSDELSRHRRTH 72
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 36
H R H+G +P+ C + CE+ F+ H RTH
Sbjct: 37 AHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 130 CAHEFCSKSFKTSGDLQKHVRTHTGK 155
C+H C K++ S L+ H RTHTG+
Sbjct: 20 CSHPGCGKTYFKSSHLKAHTRTHTGE 45
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
+PYKC + C+ +F + + +H HTGEKPYRC C F +L+ H R H+G+
Sbjct: 16 KPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGE 71
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+PYKC + C+ +F + + +H HTGEKPYRC C F +L+ H R H+G+
Sbjct: 16 KPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGE 71
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 30/89 (33%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
+KPY+C + C SF+ G+L H HTG+ +PY
Sbjct: 15 DKPYKC--DRCQASFRYKGNLASHKTVHTGE--------------------------KPY 46
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+C + C F+ + K H R H+GEKP
Sbjct: 47 RCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
H +H+G +PY+C + C F+ + K H R H+GEKP
Sbjct: 36 HKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+KPY+C + C SF+ G+L H HTG+
Sbjct: 15 DKPYKC--DRCQASFRYKGNLASHKTVHTGE 43
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
+PY C VE C KAFS H R HTGEKPY+C C K+F + L H R HT
Sbjct: 13 KPYGC-VE-CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHTSG 68
Query: 70 YTPG 73
+ G
Sbjct: 69 PSSG 72
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
+PY C VE C KAFS H R HTGEKPY+C C K+F + L H R HT
Sbjct: 13 KPYGC-VE-CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHT 66
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 32/85 (37%), Gaps = 30/85 (35%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
EKPY C C K+F S L +H R HTG+ +PY
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGE--------------------------KPY 43
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHT 123
KC C KAFS H R HT
Sbjct: 44 KCL--ECGKAFSQNSGLINHQRIHT 66
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 37
H R+H+G +PYKC C KAFS H R HT
Sbjct: 33 HQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHT 66
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTAEVPGSILDC 167
EKPY C C K+F S L +H R HTG E P L+C
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTG----EKPYKCLEC 48
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of
The Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
Y C E C KAF K H +HT + PY C HE C K F L++H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
Y C E C KAF K H +HT + PY C HE C K F L++H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 26/83 (31%)
Query: 42 YRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCP 101
Y C E C K+FK L+ H +HT + PY+CP
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQL--------------------------PYECP 35
Query: 102 VEYCEKAFSTQYSRKAHIRTHTG 124
E C+K FS K H + H G
Sbjct: 36 HEGCDKRFSLPSRLKRHEKVHAG 58
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 38
VH H+ PY+CP E C+K FS K H + H G
Sbjct: 21 VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
Y C E C KAF K H +HT + PY C HE C K F L++H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
Y C E C KAF K H +HT + PY C HE C K F L++H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 26/83 (31%)
Query: 42 YRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCP 101
Y C E C K+FK L+ H +HT + PY+CP
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQL--------------------------PYECP 35
Query: 102 VEYCEKAFSTQYSRKAHIRTHTG 124
E C+K FS K H + H G
Sbjct: 36 HEGCDKRFSLPSRLKRHEKVHAG 58
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 38
VH H+ PY+CP E C+K FS K H + H G
Sbjct: 21 VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
R YKC + C K+FS H RTHTGEKPY+C + C K+F L H R HTG
Sbjct: 17 RRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTG 71
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
R YKC + C K+FS H RTHTGEKPY+C + C K+F L H R HTG
Sbjct: 17 RRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTG 71
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 36/86 (41%), Gaps = 30/86 (34%)
Query: 42 YRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCP 101
Y+C + C KSF S DL KH RTHTG+ +PYKC
Sbjct: 19 YKC--DECGKSFSHSSDLSKHRRTHTGE--------------------------KPYKC- 49
Query: 102 VEYCEKAFSTQYSRKAHIRTHTGEKP 127
+ C KAF + H R HTG P
Sbjct: 50 -DECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
H R H+G +PYKC + C KAF + H R HTG P
Sbjct: 37 HRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 128 YRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
Y+C + C KSF S DL KH RTHTG+
Sbjct: 19 YKC--DECGKSFSHSSDLSKHRRTHTGE 44
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 18 YCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 66
YC K F + Y H+RTHTGEKPY+C EFC + L+ H+ H
Sbjct: 9 YCGKFFRSNYYLNIHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERH 55
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 104 YCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
YC K F + Y H+RTHTGEKPY+C EFC + L+ H+ H
Sbjct: 9 YCGKFFRSNYYLNIHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERH 55
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 36
+HLR H+G +PYKC E+CE A + + S + H+ H
Sbjct: 22 IHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERH 55
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 122
+HLR H+G +PYKC E+CE A + + S + H+ H
Sbjct: 22 IHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERH 55
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKH 62
++P++C + C + FS HIRTHTGEKP+ C + C + F S + ++H
Sbjct: 1 MKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRH 50
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKH 148
++P++C + C + FS HIRTHTGEKP+ C + C + F S + ++H
Sbjct: 1 MKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRH 50
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVRED 85
KP++C C ++F S L H+RTHTG+ I R R D
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD 45
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KP++C C ++F S L H+RTHTG+
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGE 29
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
+H R H+ RPY C + C KAF Q + H H+ EKP++C + C K F S L
Sbjct: 35 IHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLA 90
Query: 61 KHVRTHTGKYTPGPG 75
H H +P
Sbjct: 91 VHKTLHMQTSSPTAA 105
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 103 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTAEVPG 162
++C + F+ Y+ H RTHT E+PY C + C K+F+ Q H+R H ++ E P
Sbjct: 21 KFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRR----QDHLRDHRYIHSKEKPF 74
Query: 163 SILDCLSG 170
+C G
Sbjct: 75 KCQECGKG 82
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 17 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 67
++C + F+ Y+ H RTHT E+PY C + C K+F+ L+ H H+
Sbjct: 21 KFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHS 69
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H IHS + Y P YCEK F R H HTGE+ Y+C C KSF +
Sbjct: 41 HFNIHSWEKKY--PCRYCEKVFPLAEYRTKHEIHHTGERRYQCL--ACGKSFINYQFMSS 96
Query: 62 HVRTHTGKYTPGPGIDSRL 80
H+++ ++ P DS+L
Sbjct: 97 HIKS---VHSQDPSGDSKL 112
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 147
H IHS + Y P YCEK F R H HTGE+ Y+C C KSF +
Sbjct: 41 HFNIHSWEKKY--PCRYCEKVFPLAEYRTKHEIHHTGERRYQCL--ACGKSFINYQFMSS 96
Query: 148 HVRT 151
H+++
Sbjct: 97 HIKS 100
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 77 DSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCS 136
+ R+ V+ D + I G Y C V C++++ S + H H+ EK Y C +C
Sbjct: 2 NKRMKVKHDDHYELIVDGRVYYICIV--CKRSYVCLTSLRRHFNIHSWEKKYPC--RYCE 57
Query: 137 KSFKTSGDLQKHVRTHTGK 155
K F + KH HTG+
Sbjct: 58 KVFPLAEYRTKHEIHHTGE 76
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
Y C V C++++ S + H H+ EK Y C +C K F + KH HTG+
Sbjct: 23 YICIV--CKRSYVCLTSLRRHFNIHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGE 76
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 30 KAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
K HIRTHT +PY C +C+ SFKT G+L KH+++
Sbjct: 18 KKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKS 51
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 116 KAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 151
K HIRTHT +PY C +C+ SFKT G+L KH+++
Sbjct: 18 KKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKS 51
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT 35
H+R H+ +RPY C YC +F T+ + H+++
Sbjct: 20 HIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKS 51
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT 121
H+R H+ +RPY C YC +F T+ + H+++
Sbjct: 20 HIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKS 51
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 17 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTGK 69
E C +AF+ Q K H R+HT EKPY C C+++F L +H + H+G
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSGN 57
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 103 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTGK 155
E C +AF+ Q K H R+HT EKPY C C+++F L +H + H+G
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSGN 57
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 47 EFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFV---HLRIHSG 94
E C+++F L++H R+HT + G+ +R R D + +IHSG
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 17 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
E C K F Y H +H+GEKPY C C FK + HVR+H G
Sbjct: 11 EICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDG 60
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 103 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
E C K F Y H +H+GEKPY C C FK + HVR+H G
Sbjct: 11 EICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDG 60
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYRCAHEFCSKSFKTSGDL 59
H HSG +PY CPV C F + H+R+H G KPY C + C K F L
Sbjct: 26 HKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPDHL 81
Query: 60 QKHVR-THTG 68
H++ H+G
Sbjct: 82 NGHIKQVHSG 91
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYRCAHEFCSKSFKTSGDL 145
H HSG +PY CPV C F + H+R+H G KPY C + C K F L
Sbjct: 26 HKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPDHL 81
Query: 146 QKHVR-THTG 154
H++ H+G
Sbjct: 82 NGHIKQVHSG 91
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
EKPY C C K+F T +L H RTHTG+ P G
Sbjct: 10 EKPYECNE--CQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C C K+F T +L H RTHTG+
Sbjct: 10 EKPYECNE--CQKAFNTKSNLMVHQRTHTGE 38
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 39
+PY+C C+KAF+T+ + H RTHTGE
Sbjct: 11 KPYEC--NECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
+PY+C C+KAF+T+ + H RTHTGE
Sbjct: 11 KPYEC--NECQKAFNTKSNLMVHQRTHTGE 38
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
SG++PY C C KAF ++ H+RTHTGEKP
Sbjct: 6 SGVKPYGC--SECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
SG++PY C C KAF ++ H+RTHTGEKP
Sbjct: 6 SGVKPYGC--SECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+G KPY C+ C K+F++ L H+RTHTG+ GP
Sbjct: 6 SGVKPYGCSE--CGKAFRSKSYLIIHMRTHTGEKPSGP 41
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+G KPY C+ C K+F++ L H+RTHTG+
Sbjct: 6 SGVKPYGCSE--CGKAFRSKSYLIIHMRTHTGE 36
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C ++C K+F S +L +H R HTG+ GP
Sbjct: 10 EKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C ++C K+F S +L +H R HTG+
Sbjct: 10 EKPYVC--DYCGKAFGLSAELVRHQRIHTGE 38
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY C +YC KAF H R HTGEKP
Sbjct: 11 KPYVC--DYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY C +YC KAF H R HTGEKP
Sbjct: 11 KPYVC--DYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPYRC C K+F +L +H R HTG+ GP
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPYRC C K+F +L +H R HTG+
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGE 38
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C C KAF+ + + H R HTGEKP
Sbjct: 11 KPYRC--GECGKAFAQKANLTQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C C KAF+ + + H R HTGEKP
Sbjct: 11 KPYRC--GECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 2)
Length = 31
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
+P+ C +C K F S +LQ+H RTHTG+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+P+ C +C K F S +LQ+H RTHTG+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
RP+ C YC K F+ + H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
RP+ C YC K F+ + H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP+ CA C KSF S L H R HTG+ GP
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKP+ CA C KSF S L H R HTG+
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGE 38
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P++C C K+FS H R HTGEKP
Sbjct: 11 KPFEC--AECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P++C C K+FS H R HTGEKP
Sbjct: 11 KPFEC--AECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP+ C+ C K+F T +L H RTHTG+ GP
Sbjct: 10 EKPFECSE--CQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P++C C+KAF+T+ + H RTHTGEKP
Sbjct: 11 KPFEC--SECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P++C C+KAF+T+ + H RTHTGEKP
Sbjct: 11 KPFEC--SECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKP+ C+ C K+F T +L H RTHTG+
Sbjct: 10 EKPFECSE--CQKAFNTKSNLIVHQRTHTGE 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
KPY C H C + F G LQ+HVR HTG+
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGE 29
Score = 35.0 bits (79), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KPY C H C + F G LQ+HVR HTG+
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGE 29
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
++PY C +C++ F+ + + H+R HTGEK
Sbjct: 1 MKPYVCI--HCQRQFADPGALQRHVRIHTGEK 30
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
++PY C +C++ F+ + + H+R HTGEK
Sbjct: 1 MKPYVCI--HCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C E C K+F LQ+H R HTG+ GP
Sbjct: 10 EKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C E C K+F LQ+H R HTG+
Sbjct: 10 EKPYNC--EECGKAFIHDSQLQEHQRIHTGE 38
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY C E C KAF + H R HTGEKP
Sbjct: 11 KPYNC--EECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY C E C KAF + H R HTGEKP
Sbjct: 11 KPYNC--EECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C + CSK+F L +H +THTG+ GP
Sbjct: 10 EKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C V C KAF+ + H +THTGEKP
Sbjct: 11 KPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C V C KAF+ + H +THTGEKP
Sbjct: 11 KPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C + CSK+F L +H +THTG+
Sbjct: 10 EKPYEC--KVCSKAFTQKAHLAQHQKTHTGE 38
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTAEVPG 162
+KP+ C H C KSF+ G+L H R HTG+ + G
Sbjct: 10 QKPFECTH--CGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+KP+ C H C KSF+ G+L H R HTG+ + GP
Sbjct: 10 QKPFECTH--CGKSFRAKGNLVTHQRIHTGEKS-GP 42
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
EKPYRC + C K+F G L H+R HTG
Sbjct: 9 EKPYRC--DQCGKAFSQKGSLIVHIRVHTG 36
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
EKPYRC + C K+F G L H+R HTG
Sbjct: 9 EKPYRC--DQCGKAFSQKGSLIVHIRVHTG 36
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C + C KAFS + S HIR HTG P
Sbjct: 10 KPYRC--DQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C + C KAFS + S HIR HTG P
Sbjct: 10 KPYRC--DQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C C K+F S L +H+R HT + GP
Sbjct: 10 EKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
EKPY C C K+F S L +H+R HT
Sbjct: 10 EKPYSC--NVCGKAFVLSAHLNQHLRVHT 36
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+GEKPY C C K+F L H RTHTG+ P G
Sbjct: 6 SGEKPYECTD--CGKAFGLKSQLIIHQRTHTGESGPSSG 42
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+GEKPY C C K+F L H RTHTG+
Sbjct: 6 SGEKPYECTD--CGKAFGLKSQLIIHQRTHTGE 36
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 39
SG +PY+C C KAF + H RTHTGE
Sbjct: 6 SGEKPYEC--TDCGKAFGLKSQLIIHQRTHTGE 36
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
SG +PY+C C KAF + H RTHTGE
Sbjct: 6 SGEKPYEC--TDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTGKYTP 72
RTHTGEKPY C+H C K+F+ L H R H + P
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVP 45
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR 150
RTHTGEKPY C+H C K+F+ L H +
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFK 36
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K +K DL H R HTG+ GP
Sbjct: 10 EKPYKCVE--CGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C C K +K DL H R HTG+
Sbjct: 10 EKPYKCVE--CGKGYKRRLDLDFHQRVHTGE 38
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K+F + L +H R HTG+ GP
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC C KAFS H R HTGEKP
Sbjct: 11 KPYKC--NECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC C KAFS H R HTGEKP
Sbjct: 11 KPYKC--NECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C C K+F + L +H R HTG+
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGE 38
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+GEKPY+C C KSF G L H R HTG
Sbjct: 6 SGEKPYQCKE--CGKSFSQRGSLAVHERLHTG 35
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+GEKPY+C C KSF G L H R HTG
Sbjct: 6 SGEKPYQCKE--CGKSFSQRGSLAVHERLHTG 35
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
SG +PY+C + C K+FS + S H R HTG P
Sbjct: 6 SGEKPYQC--KECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.8 bits (68), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
SG +PY+C + C K+FS + S H R HTG P
Sbjct: 6 SGEKPYQC--KECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPYRCA C K+F +L H + HTG+ GP
Sbjct: 10 EKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPYRCA C K+F +L H + HTG+
Sbjct: 10 EKPYRCAE--CGKAFTDRSNLFTHQKIHTGE 38
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C C KAF+ + + H + HTGEKP
Sbjct: 11 KPYRC--AECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C C KAF+ + + H + HTGEKP
Sbjct: 11 KPYRC--AECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
RPY+C +E C KAF T+ S H R+HTGEKP
Sbjct: 11 RPYEC-IE-CGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
RPY+C +E C KAF T+ S H R+HTGEKP
Sbjct: 11 RPYEC-IE-CGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
++PY C C K+FKT L H R+HTG+ GP
Sbjct: 10 QRPYECIE--CGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
++PY C C K+FKT L H R+HTG+
Sbjct: 10 QRPYECIE--CGKAFKTKSSLICHRRSHTGE 38
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
T EKP+RC + C KSF+ L H HTG+ GP
Sbjct: 8 TAEKPFRC--DTCDKSFRQRSALNSHRMIHTGEKPSGP 43
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
T EKP+RC + C KSF+ L H HTG+
Sbjct: 8 TAEKPFRC--DTCDKSFRQRSALNSHRMIHTGE 38
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P++C + C+K+F + + +H HTGEKP
Sbjct: 11 KPFRC--DTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P++C + C+K+F + + +H HTGEKP
Sbjct: 11 KPFRC--DTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C C KSF+ + L KH R H+G+ GP
Sbjct: 10 EKPYNCKE--CGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C C KSF+ + L KH R H+G+
Sbjct: 10 EKPYNCKE--CGKSFRWASCLLKHQRVHSGE 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C + C KSF+ L H R HTG+ GP
Sbjct: 10 EKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC V C K+F S H R HTGEKP
Sbjct: 11 KPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC V C K+F S H R HTGEKP
Sbjct: 11 KPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C + C KSF+ L H R HTG+
Sbjct: 10 EKPYKC--DVCHKSFRYGSSLTVHQRIHTGE 38
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C E C K + +L H R H G+ T GP
Sbjct: 10 EKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTA 158
EKPY+C E C K + +L H R H G+ T+
Sbjct: 10 EKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTS 41
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+PYKC E C K ++ + + H R H GEK
Sbjct: 11 KPYKC--EDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+PYKC E C K ++ + + H R H GEK
Sbjct: 11 KPYKC--EDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C V C KAFS S H R H+GEKP
Sbjct: 11 KPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C V C KAFS S H R H+GEKP
Sbjct: 11 KPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C + C K+F L +H R H+G+ GP
Sbjct: 10 EKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C + C K+F L +H R H+G+
Sbjct: 10 EKPYEC--DVCRKAFSHHASLTQHQRVHSGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+GE PY C+ C K+F L H RTH G+ P G
Sbjct: 6 SGENPYECSE--CGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+GE PY C+ C K+F L H RTH G+
Sbjct: 6 SGENPYECSE--CGKAFNRKDQLISHQRTHAGE 36
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 39
SG PY+C C KAF+ + +H RTH GE
Sbjct: 6 SGENPYEC--SECGKAFNRKDQLISHQRTHAGE 36
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
SG PY+C C KAF+ + +H RTH GE
Sbjct: 6 SGENPYEC--SECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
PY+C C KAFS +Y +H RTH GEKP
Sbjct: 11 NPYEC--HECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
PY+C C KAFS +Y +H RTH GEKP
Sbjct: 11 NPYEC--HECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
E PY C HE C K+F L H RTH G+ GP
Sbjct: 10 ENPYEC-HE-CGKAFSRKYQLISHQRTHAGEKPSGP 43
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+GEKPY C + C K+F S L H R HTG+ P G
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVHTGESGPSSG 42
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+GEKPY C + C K+F S L H R HTG+
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVHTGE 36
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 39
SG +PY C + C KAF+ H R HTGE
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVHTGE 36
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
SG +PY C + C KAF+ H R HTGE
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY C C K FS + AH RTHTGEKP
Sbjct: 11 KPYGC--NECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY C C K FS + AH RTHTGEKP
Sbjct: 11 KPYGC--NECGKTFSQKSILSAHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C C K+F L H RTHTG+ GP
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C C K+F L H RTHTG+
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGE 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY C C KAFS++ H+RTH+GEKP
Sbjct: 11 KPYGC--SECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY C C KAFS++ H+RTH+GEKP
Sbjct: 11 KPYGC--SECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C+ C K+F + L H+RTH+G+ GP
Sbjct: 10 EKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C+ C K+F + L H+RTH+G+
Sbjct: 10 EKPYGCSE--CGKAFSSKSYLIIHMRTHSGE 38
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C + C K+F+ S L +H H+G+ GP
Sbjct: 10 EKPYKC--QVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C + C K+F+ S L +H H+G+
Sbjct: 10 EKPYKC--QVCGKAFRVSSHLVQHHSVHSGE 38
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC V C KAF H H+GE+P
Sbjct: 11 KPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC V C KAF H H+GE+P
Sbjct: 11 KPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP++C C K+F+ + L H+R HTG+ GP
Sbjct: 10 EKPFKCKE--CGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P+KC + C KAF +H+R HTGEKP
Sbjct: 11 KPFKC--KECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P+KC + C KAF +H+R HTGEKP
Sbjct: 11 KPFKC--KECGKAFRQNIHLASHLRIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKP++C C K+F+ + L H+R HTG+
Sbjct: 10 EKPFKCKE--CGKAFRQNIHLASHLRIHTGE 38
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC E C K ++++++ H + HTGE+P
Sbjct: 11 KPYKC--EKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC E C K ++++++ H + HTGE+P
Sbjct: 11 KPYKC--EKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C E C K + + +L H + HTG+ GP
Sbjct: 10 EKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C E C K + + +L H + HTG+
Sbjct: 10 EKPYKC--EKCGKGYNSKFNLDMHQKVHTGE 38
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EK Y+C + C K F S LQ H R HTG+ GP
Sbjct: 10 EKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
YKC V C K FS + H R HTGEKP
Sbjct: 13 YKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
YKC V C K FS + H R HTGEKP
Sbjct: 13 YKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EK Y+C + C K F S LQ H R HTG+
Sbjct: 10 EKCYKC--DVCGKEFSQSSHLQTHQRVHTGE 38
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RP+ C +C K + H R H G +P C C K F+ ++ +H++ H K
Sbjct: 3 RPFFC--NFCGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRDQSEVNRHLKVHQNK 58
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
RP+ C +C K + H R H G +P C C K F+ ++ +H++ H K
Sbjct: 3 RPFFC--NFCGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRDQSEVNRHLKVHQNK 58
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 30/87 (34%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+P+ C FC K+++ + L +H R H G RP
Sbjct: 2 ERPFFC--NFCGKTYRDASGLSRHRRAHLG--------------------------YRPR 33
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGE 125
CP C K F Q H++ H +
Sbjct: 34 SCPE--CGKCFRDQSEVNRHLKVHQNK 58
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 39
H R H G RP CP C K F Q H++ H +
Sbjct: 23 HRRAHLGYRPRSCPE--CGKCFRDQSEVNRHLKVHQNK 58
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
E+P+ C FC K+++ + L +H R H G
Sbjct: 2 ERPFFC--NFCGKTYRDASGLSRHRRAHLG 29
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+KPY C C K+F G L +H R HTG+ + GP
Sbjct: 10 KKPYECKE--CRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTA 158
+KPY C C K+F G L +H R HTG+ ++
Sbjct: 10 KKPYECKE--CRKTFIQIGHLNQHKRVHTGERSS 41
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTGKYTP--GPGIDSRLIVREDF-VHL 89
RTH+GEKPY C C F SG ++ H+ + HT P D+ + + D VHL
Sbjct: 8 RTHSGEKPYECY--ICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Query: 90 R 90
R
Sbjct: 66 R 66
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 149
RTH+GEKPY C C F SG ++ H+
Sbjct: 8 RTHSGEKPYECY--ICHARFTQSGTMKMHI 35
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGE-KPYRCAHEFCSKSFKTSGDLQK 61
R HSG +PY+C + C F+ + K HI + HT + C H C DL
Sbjct: 8 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGV 63
Query: 62 HVRTHTGKYTPGPG 75
H+R P G
Sbjct: 64 HLRKQHSYSGPSSG 77
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGE-KPYRCAHEFCSKSFKTSGDLQK 147
R HSG +PY+C + C F+ + K HI + HT + C H C DL
Sbjct: 8 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGV 63
Query: 148 HVR 150
H+R
Sbjct: 64 HLR 66
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP++C E C K F + L H R HTG+ GP
Sbjct: 10 EKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P+KC E C K F+ +H R HTGEKP
Sbjct: 11 KPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P+KC E C K F+ +H R HTGEKP
Sbjct: 11 KPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKP++C E C K F + L H R HTG+
Sbjct: 10 EKPFKC--EECGKRFTQNSQLHSHQRVHTGE 38
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C+ C KSF L H R HTG+ GP
Sbjct: 10 EKPYECSD--CGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C+ C KSF L H R HTG+
Sbjct: 10 EKPYECSD--CGKSFIKKSQLHVHQRIHTGE 38
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+ PYKC CEK+FS + H R HT EKP
Sbjct: 10 VNPYKC--SQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+ PYKC CEK+FS + H R HT EKP
Sbjct: 10 VNPYKC--SQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
T EKPY+C C K+F+T +L H HTG+ GP
Sbjct: 8 TKEKPYKCYE--CGKAFRTRSNLTTHQVIHTGEKRSGP 43
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
T EKPY+C C K+F+T +L H HTG+
Sbjct: 8 TKEKPYKCYE--CGKAFRTRSNLTTHQVIHTGE 38
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+PYKC C KAF T+ + H HTGEK
Sbjct: 11 KPYKC--YECGKAFRTRSNLTTHQVIHTGEK 39
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+PYKC C KAF T+ + H HTGEK
Sbjct: 11 KPYKC--YECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 17 EYCEKAFSTQYSRKAHIRTHTGEK 40
EYC K F ++S +AH+R HT EK
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 103 EYCEKAFSTQYSRKAHIRTHTGEK 126
EYC K F ++S +AH+R HT EK
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
KPY+C C K+F + L +H R HTG+ GP
Sbjct: 11 KPYQCNE--CGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C C KAFS H R HTGEKP
Sbjct: 11 KPYQC--NECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C C KAFS H R HTGEKP
Sbjct: 11 KPYQC--NECGKAFSQTSKLARHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KPY+C C K+F + L +H R HTG+
Sbjct: 11 KPYQCNE--CGKAFSQTSKLARHQRVHTGE 38
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K F + L H R HTG+ GP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC C K F+ H R HTGEKP
Sbjct: 11 KPYKC--NECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC C K F+ H R HTGEKP
Sbjct: 11 KPYKC--NECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C C K F + L H R HTG+
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLTNHWRIHTGE 38
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP+ C C F S +L +H R+H+G GP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
EKP+ C C F S +L +H R+H+G
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSG 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K F+ + L +H R HTG+ GP
Sbjct: 10 EKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C C K F+ + L +H R HTG+
Sbjct: 10 EKPYKCNE--CGKVFRHNSYLSRHQRIHTGE 38
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC C K F H R HTGEKP
Sbjct: 11 KPYKC--NECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC C K F H R HTGEKP
Sbjct: 11 KPYKC--NECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C V C KAFS + S H R H+G+KP
Sbjct: 11 KPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C V C KAFS + S H R H+G+KP
Sbjct: 11 KPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C+ C K+F L H R H+GK GP
Sbjct: 10 EKPYECS--VCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C+ C K+F L H R H+GK
Sbjct: 10 EKPYECS--VCGKAFSHRQSLSVHQRIHSGK 38
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+GEKPY C C K F + L H R HTG+ GP
Sbjct: 6 SGEKPYGCNE--CGKDFSSKSYLIVHQRIHTGEKLSGP 41
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
SG +PY C C K FS++ H R HTGEK
Sbjct: 6 SGEKPYGC--NECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
SG +PY C C K FS++ H R HTGEK
Sbjct: 6 SGEKPYGC--NECGKDFSSKSYLIVHQRIHTGEK 37
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+GEKPY C C K F + L H R HTG+
Sbjct: 6 SGEKPYGCNE--CGKDFSSKSYLIVHQRIHTGE 36
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C+ C KSF L H + HTG+ GP
Sbjct: 10 EKPYECS--ICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C + C K+F+ + H + HTGEKP
Sbjct: 11 KPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C + C K+F+ + H + HTGEKP
Sbjct: 11 KPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C+ C KSF L H + HTG+
Sbjct: 10 EKPYECS--ICGKSFTKKSQLHVHQQIHTGE 38
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
EKPY C+ C K+F + L H RTH+G+ P G
Sbjct: 10 EKPYECSE--CGKAFIRNSQLIVHQRTHSGESGPSSG 44
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C+ C K+F + L H RTH+G+
Sbjct: 10 EKPYECSE--CGKAFIRNSQLIVHQRTHSGE 38
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+GEKPY CA C ++F + L +H + HT K P G
Sbjct: 6 SGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
+GEKPY CA C ++F + L +H + HT
Sbjct: 6 SGEKPYSCAE--CKETFSDNNRLVQHQKMHT 34
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C C KSF L +H R HTG+ GP
Sbjct: 10 EKPYICNE--CGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C C KSF L +H R HTG+
Sbjct: 10 EKPYICNE--CGKSFIQKSHLNRHRRIHTGE 38
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP++C E C K F + L H R HTG+ GP
Sbjct: 10 EKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P++C E C K F+ +H R HTGEKP
Sbjct: 11 KPFQC--EECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P++C E C K F+ +H R HTGEKP
Sbjct: 11 KPFQC--EECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKP++C E C K F + L H R HTG+
Sbjct: 10 EKPFQC--EECGKRFTQNSHLHSHQRVHTGE 38
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
++PY C C KAFS S H HTGEKP
Sbjct: 10 VKPYMC--NECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
++PY C C KAFS S H HTGEKP
Sbjct: 10 VKPYMC--NECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
KPY C C K+F L H HTG+ GP
Sbjct: 11 KPYMCNE--CGKAFSVYSSLTTHQVIHTGEKPSGP 43
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 101 PVEYCEKAFSTQYSRKAHIRT-HTG---EKPYRCAHEFC---SKSFKTSGDLQKHVRTHT 153
P + C++ FST + H+ H G + + C E C KSFK L H+R HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 154 GKYTAEVPG 162
G+ + G
Sbjct: 87 GEKSGPSSG 95
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 15 PVEYCEKAFSTQYSRKAHIRT-HTG---EKPYRCAHEFC---SKSFKTSGDLQKHVRTHT 67
P + C++ FST + H+ H G + + C E C KSFK L H+R HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 68 GKYTPGP 74
G+ + GP
Sbjct: 87 GEKS-GP 92
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 19/78 (24%)
Query: 49 CSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKA 108
C ++F T +L HV T ++ GP ++ + E+ CP E K+
Sbjct: 31 CDRTFSTMHELVTHV---TMEHVGGPEQNNHVCYWEE--------------CPREG--KS 71
Query: 109 FSTQYSRKAHIRTHTGEK 126
F +Y HIR HTGEK
Sbjct: 72 FKAKYKLVNHIRVHTGEK 89
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 13 KCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+CP E K+F +Y HIR HTGEK
Sbjct: 64 ECPREG--KSFKAKYKLVNHIRVHTGEK 89
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
E+P++C C KSF S L +H R HTG+ GP
Sbjct: 10 ERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+P++C C KSF S L +H R HTG+
Sbjct: 10 ERPHKCNE--CGKSFIQSAHLIQHQRIHTGE 38
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
RP+KC C K+F H R HTGEKP
Sbjct: 11 RPHKC--NECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
RP+KC C K+F H R HTGEKP
Sbjct: 11 RPHKC--NECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 41 PYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
P +C C K F TSG+L++H+R H+G+
Sbjct: 2 PLKCRE--CGKQFTTSGNLKRHLRIHSGE 28
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Query: 127 PYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
P +C C K F TSG+L++H+R H+G+
Sbjct: 2 PLKCRE--CGKQFTTSGNLKRHLRIHSGE 28
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 11 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
P KC C K F+T + K H+R H+GEK
Sbjct: 2 PLKC--RECGKQFTTSGNLKRHLRIHSGEK 29
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 97 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
P KC C K F+T + K H+R H+GEK
Sbjct: 2 PLKC--RECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C C K+F + L +H R HTG+ GP
Sbjct: 10 EKPYECKE--CGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C + C KAFS H R HTGEKP
Sbjct: 11 KPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C + C KAFS H R HTGEKP
Sbjct: 11 KPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C C K+F + L +H R HTG+
Sbjct: 10 EKPYECKE--CGKAFSQTTHLIQHQRVHTGE 38
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K+F + +H R HTG+ GP
Sbjct: 10 EKPYKCME--CGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC C KAF S H R HTG++P
Sbjct: 11 KPYKC--MECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC C KAF S H R HTG++P
Sbjct: 11 KPYKC--MECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C C K+F + +H R HTG+
Sbjct: 10 EKPYKCME--CGKAFGDNSSCTQHQRLHTGQ 38
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 11 PYKCPVEYCEKAFSTQYSRKAHIRTHTG 38
P++C C K FS ++ K H++ HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 97 PYKCPVEYCEKAFSTQYSRKAHIRTHTG 124
P++C C K FS ++ K H++ HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 41 PYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
P++C C K F +L+ HV+ HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 127 PYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
P++C C K F +L+ HV+ HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K+F+ L H TH+G+ GP
Sbjct: 10 EKPYKCNE--CGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC C KAF + S H TH+GEKP
Sbjct: 11 KPYKC--NECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC C KAF + S H TH+GEKP
Sbjct: 11 KPYKC--NECGKAFRARSSLAIHQATHSGEKP 40
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C C K+F+ L H TH+G+
Sbjct: 10 EKPYKCNE--CGKAFRARSSLAIHQATHSGE 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K F + L +H R HTG GP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
EKPY+C C K F + L +H R HTG
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRRVHTG 37
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC C K F+ H R HTG KP
Sbjct: 11 KPYKC--NECGKVFTQNSHLARHRRVHTGGKP 40
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC C K F+ H R HTG KP
Sbjct: 11 KPYKC--NECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
RPY C V C KAF+ + + H + HTGEKP
Sbjct: 11 RPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
RPY C V C KAF+ + + H + HTGEKP
Sbjct: 11 RPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
E+PY C C K+F +L KH + HTG+ GP
Sbjct: 10 ERPYICT--VCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
E+PY C C K+F +L KH + HTG+
Sbjct: 10 ERPYICT--VCGKAFTDRSNLIKHQKIHTGE 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY CA C K+F +L KH + HT + GP
Sbjct: 10 EKPYICAE--CGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
EKPY CA C K+F +L KH + HT
Sbjct: 10 EKPYICAE--CGKAFTIRSNLIKHQKIHT 36
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K+F+ +L H HTG+ GP
Sbjct: 10 EKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC C KAF + H HTGEKP
Sbjct: 11 KPYKC--NECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC C KAF + H HTGEKP
Sbjct: 11 KPYKC--NECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C C K+F+ +L H HTG+
Sbjct: 10 EKPYKCNE--CGKAFRAHSNLTTHQVIHTGE 38
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+G+KP C C K+F+ S L KH R H+G+ GP
Sbjct: 6 SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGEKPSGP 41
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+G+KP C C K+F+ S L KH R H+G+
Sbjct: 6 SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGE 36
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY C C K+F L H HTGK GP
Sbjct: 10 EKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C C KAFS + S H HTG+KP
Sbjct: 11 KPYEC--NQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C C KAFS + S H HTG+KP
Sbjct: 11 KPYEC--NQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY C C K+F L H HTGK
Sbjct: 10 EKPYECNQ--CGKAFSVRSSLTTHQAIHTGK 38
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
KPY C C K+F++ L H RTHTG+ P G
Sbjct: 11 KPYVCNE--CGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KPY C C K+F++ L H RTHTG+
Sbjct: 11 KPYVCNE--CGKAFRSKSYLIIHTRTHTGE 38
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 39
++PY C C KAF ++ H RTHTGE
Sbjct: 10 MKPYVC--NECGKAFRSKSYLIIHTRTHTGE 38
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
++PY C C KAF ++ H RTHTGE
Sbjct: 10 MKPYVC--NECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C HE C K F+ + L +H HTG+ GP
Sbjct: 10 EKPYKC-HE-CGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C HE C K F+ + L +H HTG+
Sbjct: 10 EKPYKC-HE-CGKVFRRNSHLARHQLIHTGE 38
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K F + L H R HTG GP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
EKPY+C C K F + L H R HTG
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLANHQRIHTG 37
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC C K F+ H R HTG KP
Sbjct: 11 KPYKC--NECGKVFTQNSHLANHQRIHTGVKP 40
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC C K F+ H R HTG KP
Sbjct: 11 KPYKC--NECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 14 CPVEYCEKAFSTQYSRKAHIRTHTGEK 40
C C KAF+ S AH+R HTGEK
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 100 CPVEYCEKAFSTQYSRKAHIRTHTGEK 126
C C KAF+ S AH+R HTGEK
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
KP +C C K+F + L HVR HTG+
Sbjct: 1 KPCQCV--MCGKAFTQASSLIAHVRQHTGE 28
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KP +C C K+F + L HVR HTG+
Sbjct: 1 KPCQCV--MCGKAFTQASSLIAHVRQHTGE 28
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+PYKCP C A + + + H+R HTGEK
Sbjct: 8 KPYKCP--QCSYASAIKANLNVHLRKHTGEK 36
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+PYKCP C A + + + H+R HTGEK
Sbjct: 8 KPYKCP--QCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+G+KPY C C K+F L H R HTG+ P G
Sbjct: 6 SGQKPYVCNE--CGKAFGLKSQLIIHERIHTGESGPSSG 42
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+G+KPY C C K+F L H R HTG+
Sbjct: 6 SGQKPYVCNE--CGKAFGLKSQLIIHERIHTGE 36
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 39
SG +PY C C KAF + H R HTGE
Sbjct: 6 SGQKPYVC--NECGKAFGLKSQLIIHERIHTGE 36
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
SG +PY C C KAF + H R HTGE
Sbjct: 6 SGQKPYVC--NECGKAFGLKSQLIIHERIHTGE 36
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP++C C KS+ L +H R HTG+ GP
Sbjct: 10 EKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKP++C C KS+ L +H R HTG+
Sbjct: 10 EKPFKCGE--CGKSYNQRVHLTQHQRVHTGE 38
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P+KC C K+++ + H R HTGEKP
Sbjct: 11 KPFKC--GECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P+KC C K+++ + H R HTGEKP
Sbjct: 11 KPFKC--GECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C+ C KSF L+ H + HTG+ GP
Sbjct: 10 EKPYKCSD--CGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C+ C KSF L+ H + HTG+
Sbjct: 10 EKPYKCSD--CGKSFTWKSRLRIHQKCHTGE 38
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP++C E C K F T+ H R+H+G+ GP
Sbjct: 10 EKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P+KC E C K F T +H R+H+GEKP
Sbjct: 11 KPFKC--EECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 29.6 bits (65), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P+KC E C K F T +H R+H+GEKP
Sbjct: 11 KPFKC--EECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKP++C E C K F T+ H R+H+G+
Sbjct: 10 EKPFKC--EECGKGFYTNSQCYSHQRSHSGE 38
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C+ C K+F L +H R HTG GP
Sbjct: 10 EKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
EKPY+C+ C K+F L +H R HTG
Sbjct: 10 EKPYKCSE--CGKAFHRHTHLNEHRRIHTG 37
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C E C K F DL H HTG+ GP
Sbjct: 10 EKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PYKC E C K F + H HTGEKP
Sbjct: 11 KPYKC--EECGKGFICRRDLYTHHMVHTGEKP 40
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PYKC E C K F + H HTGEKP
Sbjct: 11 KPYKC--EECGKGFICRRDLYTHHMVHTGEKP 40
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C E C K F DL H HTG+
Sbjct: 10 EKPYKC--EECGKGFICRRDLYTHHMVHTGE 38
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP+ C C KSF + L H R HTG+ GP
Sbjct: 10 EKPHECRE--CGKSFSFNSQLIVHQRIHTGENPSGP 43
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
SG +P+ C CEKAFS++ H +TH EKP
Sbjct: 6 SGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.6 bits (65), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
SG +P+ C CEKAFS++ H +TH EKP
Sbjct: 6 SGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C+ C K+F L H ++HTG+ GP
Sbjct: 10 EKPYKCSD--CGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
EKPY+C+ C K+F L H ++HTG+
Sbjct: 10 EKPYKCSD--CGKAFTRKSGLHIHQQSHTGE 38
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
++PY C H C K+F + DL +H ++H K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
++PY C H C K+F + DL +H ++H K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P+ C C KAFS H R HTGEKP
Sbjct: 11 KPFDC--IDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P+ C C KAFS H R HTGEKP
Sbjct: 11 KPFDC--IDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP+ C C K+F L +H R HTG+ GP
Sbjct: 10 EKPFDCID--CGKAFSDHIGLNQHRRIHTGEKPSGP 43
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
++PY C C K FS + H R+HTG KP
Sbjct: 10 VKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
++PY C C K FS + H R+HTG KP
Sbjct: 10 VKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
KPY C+ C+K+F L H R+HTG GP
Sbjct: 11 KPYGCSQ--CAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
KPY C+ C+K+F L H R+HTG
Sbjct: 11 KPYGCSQ--CAKTFSLKSQLIVHQRSHTG 37
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+P+KC VE C K FS + + H + HTGEKP
Sbjct: 11 KPFKC-VE-CGKGFSRRSALNVHHKLHTGEKP 40
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+P+KC VE C K FS + + H + HTGEKP
Sbjct: 11 KPFKC-VE-CGKGFSRRSALNVHHKLHTGEKP 40
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP++C C K F L H + HTG+ GP
Sbjct: 10 EKPFKCVE--CGKGFSRRSALNVHHKLHTGEKPSGP 43
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 38
+RPY C V C K FS ++ + H R HTG
Sbjct: 1 MRPYSCSV--CGKRFSLKHQMETHYRVHTG 28
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 124
+RPY C V C K FS ++ + H R HTG
Sbjct: 1 MRPYSCSV--CGKRFSLKHQMETHYRVHTG 28
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
++PY+C +YC ++FS S+ H+ TH +K
Sbjct: 1 MKPYQC--DYCGRSFSDPTSKMRHLETHDTDK 30
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
++PY+C +YC ++FS S+ H+ TH +K
Sbjct: 1 MKPYQC--DYCGRSFSDPTSKMRHLETHDTDK 30
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+P++C C++ FS K H RTHTGEK
Sbjct: 1 KPFQCKT--CQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+P++C C++ FS K H RTHTGEK
Sbjct: 1 KPFQCKT--CQRKFSRSDHLKTHTRTHTGEK 29
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
KP++C + C + F S L+ H RTHTG+
Sbjct: 1 KPFQC--KTCQRKFSRSDHLKTHTRTHTGE 28
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KP++C + C + F S L+ H RTHTG+
Sbjct: 1 KPFQC--KTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTAEVPGS 163
+GEKPY C C FK + HVR+H G P S
Sbjct: 6 SGEKPYSCP--VCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+GEKPY C C FK + HVR+H G
Sbjct: 6 SGEKPYSCP--VCGLRFKRKDRMSYHVRSHDG 35
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K F + L +H HTG+ GP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSGP 43
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRT 65
+PY C+ +C+ SFKT G+L KH+++
Sbjct: 1 RPYHCS--YCNFSFKTKGNLTKHMKS 24
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRT 151
+PY C+ +C+ SFKT G+L KH+++
Sbjct: 1 RPYHCS--YCNFSFKTKGNLTKHMKS 24
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP++C + C KSF L +H HT + GP
Sbjct: 10 EKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+GEKPY C C K+F H R HTG+ P G
Sbjct: 6 SGEKPYVCTE--CGKAFIRKSHFITHERIHTGESGPSSG 42
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
EKPY C C K+F L H RTH G P G
Sbjct: 10 EKPYECNE--CGKAFIWKSLLIVHERTHAGVSGPSSG 44
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+G++ Y C + C KSF+ G L H R HTG
Sbjct: 6 SGQRVYEC--QECGKSFRQKGSLTLHERIHTG 35
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+G++ Y C + C KSF+ G L H R HTG
Sbjct: 6 SGQRVYEC--QECGKSFRQKGSLTLHERIHTG 35
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
SG R Y+C + C K+F + S H R HTG P
Sbjct: 6 SGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGP 38
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
SG R Y+C + C K+F + S H R HTG P
Sbjct: 6 SGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 93 SGIRPYKCPVEYCEKAFST-QYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 151
SG C C + FS QY H +K + C C KSF L++H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 152 H--TGKYTAEVPG 162
H T Y E G
Sbjct: 63 HSDTRDYICEFSG 75
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 7 SGIRPYKCPVEYCEKAFST-QYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
SG C C + FS QY H +K + C C KSF L++H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 66 HT 67
H+
Sbjct: 63 HS 64
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKPY+C C K F + L +H HTG+ GP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKPSGP 43
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+KC C+K F+ S H R HTGEKP
Sbjct: 13 FKC--NECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+KC C+K F+ S H R HTGEKP
Sbjct: 13 FKC--NECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+K ++C C K+F S L H R HTG+ GP
Sbjct: 10 KKLFKCNE--CKKTFTQSSSLTVHQRIHTGEKPSGP 43
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
EKPY C E C F+ L+ H+R HTG
Sbjct: 9 EKPYPC--EICGTRFRHLQTLKSHLRIHTG 36
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
EKPY C E C F+ L+ H+R HTG
Sbjct: 9 EKPYPC--EICGTRFRHLQTLKSHLRIHTG 36
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY C E C F + K+H+R HTG P
Sbjct: 10 KPYPC--EICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY C E C F + K+H+R HTG P
Sbjct: 10 KPYPC--EICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+GEKPY C+ C K+F L H HTG P G
Sbjct: 6 SGEKPYVCSD--CGKAFTFKSQLIVHQGIHTGVSGPSSG 42
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
E PY C C K F L H +TH+G+ P G
Sbjct: 10 ENPYECCE--CGKVFSRKDQLVSHQKTHSGQSGPSSG 44
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+PY+C C K+FS Y H THT EKP
Sbjct: 11 KPYQC--SECGKSFSGSYRLTQHWITHTREKP 40
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+PY+C C K+FS Y H THT EKP
Sbjct: 11 KPYQC--SECGKSFSGSYRLTQHWITHTREKP 40
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
KPY+C+ C KSF S L +H THT + GP
Sbjct: 11 KPYQCSE--CGKSFSGSYRLTQHWITHTREKPSGP 43
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
EKPY+C E C F L+ HV HTG
Sbjct: 9 EKPYKC--ETCGARFVQVAHLRAHVLIHTG 36
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
EKPY+C E C F L+ HV HTG
Sbjct: 9 EKPYKC--ETCGARFVQVAHLRAHVLIHTG 36
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+GEKPY C C K+F L H HTG GP
Sbjct: 6 SGEKPYSCNE--CGKAFTFKSQLIVHKGVHTGVKPSGP 41
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
SG +PY C C KAF+ + H HTG KP
Sbjct: 6 SGEKPYSC--NECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
SG +PY C C KAF+ + H HTG KP
Sbjct: 6 SGEKPYSC--NECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 55 TSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYS 114
++GD + + Y G + R+ FV HS PY C EY ++ F T S
Sbjct: 141 SNGDDGGRLEENLKLYNEWNGFEGRI-----FVGFGPHS---PYLCSEEYLKRVFDTAKS 192
Query: 115 RKAHIRTHTGE 125
A + H E
Sbjct: 193 LNAPVTIHLYE 203
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EK Y+C C K F + L +H + HTG+ GP
Sbjct: 10 EKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
YKC C K FS H + HTGEKP
Sbjct: 13 YKC--NECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
YKC C K FS H + HTGEKP
Sbjct: 13 YKC--NECGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of
CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM
THERMOTOGA Maritima At 1.9 A Resolution
Length = 418
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 55 TSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYS 114
++GD + + Y G + R+ FV HS PY C EY ++ F T S
Sbjct: 153 SNGDDGGRLEENLKLYNEWNGFEGRI-----FVGFGPHS---PYLCSEEYLKRVFDTAKS 204
Query: 115 RKAHIRTHTGE 125
A + H E
Sbjct: 205 LNAPVTIHLYE 215
>pdb|2ELN|A Chain A, Solution Structure Of The 11th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 38
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 37
SGI KCP + C+ + +Y +AH++ HT
Sbjct: 6 SGIL-LKCPTDGCDYSTPDKYKLQAHLKVHT 35
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 93 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 123
SGI KCP + C+ + +Y +AH++ HT
Sbjct: 6 SGIL-LKCPTDGCDYSTPDKYKLQAHLKVHT 35
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
T E P++C C K+F S L KH H G+ GP
Sbjct: 8 TKEHPFKCNE--CGKTFSHSAHLSKHQLIHAGENPSGP 43
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EK Y C C KSF + L KH R H+G+ GP
Sbjct: 10 EKLYNCKE--CGKSFSRAPCLLKHERLHSGEKPSGP 43
>pdb|2BE3|A Chain A, Structure Of A Gtp Pyrophosphokinase Family Protein From
Streptococcus Pneumoniae
pdb|2BE3|B Chain B, Structure Of A Gtp Pyrophosphokinase Family Protein From
Streptococcus Pneumoniae
Length = 226
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 77 DSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCS 136
D R+I D++ R SG R Y VEY + + A I+ T + E S
Sbjct: 101 DXRIIQERDYITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAXNFWATIEH-S 159
Query: 137 KSFKTSGDLQKHVR 150
++K GD ++
Sbjct: 160 LNYKYQGDFPDEIK 173
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+GEK + C + C K+F L H R HTG+ P G
Sbjct: 6 SGEKLHECNN--CGKAFSFKSQLIIHQRIHTGESGPSSG 42
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 17 EYCEKAFSTQYSRKAHIRTHTGEK 40
E C +AF+ Q + K H R+HT EK
Sbjct: 6 EVCTRAFARQEALKRHYRSHTNEK 29
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 103 EYCEKAFSTQYSRKAHIRTHTGEK 126
E C +AF+ Q + K H R+HT EK
Sbjct: 6 EVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
R Y+C C KAF+ + + H R HTGEKP
Sbjct: 11 RHYEC--SECGKAFARKSTLIMHQRIHTGEKP 40
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
R Y+C C KAF+ + + H R HTGEKP
Sbjct: 11 RHYEC--SECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRC 44
+PY C + C K FS HI+ HT E+P++C
Sbjct: 11 KPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRC 130
+PY C + C K FS HI+ HT E+P++C
Sbjct: 11 KPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+KPY+C C K F + L +H HTG+ GP
Sbjct: 10 KKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSGP 43
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+GEK + C+ C K+F L H R HTG+ GP
Sbjct: 6 SGEKLHECSE--CRKTFSFHSQLVIHQRIHTGENPSGP 41
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 14 CPVEYCEKAFSTQYSRKAHIRTHTGEK 40
C ++ C K + +AH+R HTGE+
Sbjct: 11 CHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 100 CPVEYCEKAFSTQYSRKAHIRTHTGEK 126
C ++ C K + +AH+R HTGE+
Sbjct: 11 CHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 67
TG KP++C C +SF S L H + H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRHM 33
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
TG KP++C C +SF S L H + H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRHM 33
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
EKP++C C +F S L KH+R+H GP
Sbjct: 10 EKPFQCKE--CGMNFSWSCSLFKHLRSHERTDPSGP 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,738,849
Number of Sequences: 62578
Number of extensions: 235131
Number of successful extensions: 1460
Number of sequences better than 100.0: 184
Number of HSP's better than 100.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 763
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)