RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8966
(175 letters)
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 153 bits (389), Expect = 5e-48
Identities = 48/154 (31%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
HL H+G +P+ C E CEK F++ + H THTGEK + C + C F T +++
Sbjct: 32 AHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMK 91
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
KH I Y C E C KAF K H
Sbjct: 92 KHFNRFHN------------------------IKICVYVCHFENCGKAFKKHNQLKVHQF 127
Query: 121 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+HT + PY C HE C K F L++H + H G
Sbjct: 128 SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 143 bits (363), Expect = 4e-44
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 28/155 (18%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
+ + Y C C A++ + +AH+ HTGEKP+ C E C K F + L +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 62 HVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT 121
H THTG+ + + C + C+ F+T+ + K H
Sbjct: 63 HSLTHTGE--------------------------KNFTCDSDGCDLRFTTKANMKKHFNR 96
Query: 122 HTGEK--PYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
K Y C E C K+FK L+ H +HT
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQ 131
Score = 126 bits (318), Expect = 3e-37
Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 31/156 (19%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK--PYRCAHEFCSKSFKTSGD 58
H H+G + + C + C+ F+T+ + K H K Y C E C K+FK
Sbjct: 62 RHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 59 LQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAH 118
L+ H +HT + PY+CP E C+K FS K H
Sbjct: 122 LKVHQFSHTQQ--------------------------LPYECPHEGCDKRFSLPSRLKRH 155
Query: 119 IRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHT 153
+ H G + + CS KT KHV H
Sbjct: 156 EKVHAGYPCKKD--DSCSFVGKTWTLYLKHVAECHQ 189
Score = 120 bits (302), Expect = 5e-35
Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 26/124 (20%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLR 90
K Y C+ C ++ + LQ H+ HTG+
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGE--------------------- 40
Query: 91 IHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR 150
+P+ C E CEK F++ + H THTGEK + C + C F T +++KH
Sbjct: 41 -----KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Query: 151 THTG 154
Sbjct: 96 RFHN 99
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 149 bits (378), Expect = 6e-47
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 4 RIHSGIRPYKCP---VEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
IH + + C + F QY H+R HTGEKP++C E C KS+ +L+
Sbjct: 27 HIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLK 86
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI- 119
H+R+HTG+ +PY C E C KAFS R H
Sbjct: 87 THLRSHTGE--------------------------KPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
RTH+ EKPY C C+K + L+KHV+T G
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 133 bits (337), Expect = 1e-40
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 35/152 (23%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHI---RTHTGEKPYRCAHEFC---SKSFKTSGDLQKHV 63
+ + C + F +Q HI H K + C C + FK L H+
Sbjct: 2 TDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Query: 64 RTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 123
R HTG+ +P+KC E C K++S + K H+R+HT
Sbjct: 60 RRHTGE--------------------------KPHKCTFEGCRKSYSRLENLKTHLRSHT 93
Query: 124 GEKPYRCAHEFCSKSFKTSGDLQKH-VRTHTG 154
GEKPY C HE CSK+F + D KH RTH+
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Score = 118 bits (297), Expect = 2e-34
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 25/124 (20%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
VH+R H+G +P+KC E C K++S + K H+R+HTGEKPY C HE CSK+F + D
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
KH R HS +PY C + C K ++ S + H++
Sbjct: 117 KH-------------------------QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 121 THTG 124
T G
Sbjct: 152 TVHG 155
Score = 104 bits (263), Expect = 2e-29
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 28/119 (23%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E R CS+ F + L H+ + IH + +
Sbjct: 1 ETDCRWDG--CSQEFDSQEQLVHHINSE-----------------------HIHGERKEF 35
Query: 99 KCP---VEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
C + F QY H+R HTGEKP++C E C KS+ +L+ H+R+HTG
Sbjct: 36 VCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 143 bits (362), Expect = 2e-44
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 35/161 (21%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEF-------CSKSF 53
I + C++ FST + H+ P + H KSF
Sbjct: 15 SCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
Query: 54 KTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQY 113
K L H+R HTG+ +P+ CP C K F+
Sbjct: 73 KAKYKLVNHIRVHTGE--------------------------KPFPCPFPGCGKIFARSE 106
Query: 114 SRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ K H RTHTGEKP++C E C + F S D +KH+ HT
Sbjct: 107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 122 bits (309), Expect = 2e-36
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 33/137 (24%)
Query: 1 VHLRIHSGIRPYKCPVEY-------CEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSF 53
H+ + P + K+F +Y HIR HTGEKP+ C C K F
Sbjct: 43 THVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF 102
Query: 54 KTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQY 113
S +L+ H RTHTG+ +P+KC E C++ F+
Sbjct: 103 ARSENLKIHKRTHTGE--------------------------KPFKCEFEGCDRRFANSS 136
Query: 114 SRKAHIRTHTGEKPYRC 130
RK H+ HT +K
Sbjct: 137 DRKKHMHVHTSDKSGPS 153
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 139 bits (354), Expect = 1e-43
Identities = 48/146 (32%), Positives = 65/146 (44%), Gaps = 28/146 (19%)
Query: 7 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 66
S RP+ C C K + + H R HTGEKPY+C + C + F S L++H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 67 TGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
TG +P++C + C++ FS K H RTHTGEK
Sbjct: 62 TGV--------------------------KPFQC--KTCQRKFSRSDHLKTHTRTHTGEK 93
Query: 127 PYRCAHEFCSKSFKTSGDLQKHVRTH 152
P+ C C K F S +L +H H
Sbjct: 94 PFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 115 bits (291), Expect = 3e-34
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 28/118 (23%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIR 96
+ ++P+ CA+ C+K + LQ H R HTG+ +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE--------------------------K 35
Query: 97 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
PY+C + CE+ FS K H R HTG KP++C + C + F S L+ H RTHTG
Sbjct: 36 PYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTG 91
Score = 106 bits (266), Expect = 2e-30
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 28/122 (22%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
+H R H+G +PY+C + CE+ FS K H R HTG KP++C + C + F S L+
Sbjct: 26 MHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLK 83
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
H RTHTG+ +P+ C C+K F+ H
Sbjct: 84 THTRTHTGE--------------------------KPFSCRWPSCQKKFARSDELVRHHN 117
Query: 121 TH 122
H
Sbjct: 118 MH 119
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 136 bits (344), Expect = 5e-42
Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 29/145 (20%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
R CP + C K F + + H+ TH G + + CA C K+F S L++H HTG+
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGE 60
Query: 70 YTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 129
+P++C E C K FS ++ + H+R HTG++PY
Sbjct: 61 --------------------------KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 130 CAHEFCSKSFKTSGDLQKHVRTHTG 154
C + C+K F S +L+ H+ TH
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 117 bits (295), Expect = 1e-34
Identities = 44/127 (34%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
HL H G R + C C KAF K H HTGEKP++C E C K F +L+
Sbjct: 26 HLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT 82
Query: 62 HVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT 121
HVR HTG RPY CP + C K F+ + K+HI T
Sbjct: 83 HVRIHTGD--------------------------RPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 122 HTGEKPY 128
H K
Sbjct: 117 HAKAKNN 123
Score = 104 bits (262), Expect = 1e-29
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 29/116 (25%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
+ C H+ C+K F+ + ++KH+ TH G R +
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH---------------------------GPRVH 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
C C KAF K H HTGEKP++C E C K F +L+ HVR HTG
Sbjct: 36 VC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Score = 61.0 bits (149), Expect = 7e-13
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
H+RIH+G RPY CP + C K F+ + K+HI TH K
Sbjct: 82 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 123 bits (312), Expect = 2e-36
Identities = 66/154 (42%), Positives = 79/154 (51%), Gaps = 34/154 (22%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H R H+G +PYKCP C K+FS + H RTHTGEKPY+C C KSF +L+
Sbjct: 39 EHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLR 94
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
H RTHTG+ +PY CP C K+FS +AH R
Sbjct: 95 AHQRTHTGE--------------------------KPYACPE--CGKSFSQLAHLRAHQR 126
Query: 121 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
THTGEKPY+C C KSF +L H RTHTG
Sbjct: 127 THTGEKPYKCPE--CGKSFSREDNLHTHQRTHTG 158
Score = 122 bits (308), Expect = 8e-36
Identities = 63/154 (40%), Positives = 75/154 (48%), Gaps = 34/154 (22%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
+ G +PY CP C K+FS H RTHTGEKPY+C C KSF DL
Sbjct: 11 AQAALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLT 66
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
+H RTHTG+ +PYKC C K+FS + + +AH R
Sbjct: 67 RHQRTHTGE--------------------------KPYKC--PECGKSFSQRANLRAHQR 98
Query: 121 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
THTGEKPY C C KSF L+ H RTHTG
Sbjct: 99 THTGEKPYACPE--CGKSFSQLAHLRAHQRTHTG 130
Score = 121 bits (306), Expect = 2e-35
Identities = 66/154 (42%), Positives = 79/154 (51%), Gaps = 34/154 (22%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H R H+G +PYKC C K+FS + + +AH RTHTGEKPY C C KSF L+
Sbjct: 67 RHQRTHTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLR 122
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
H RTHTG+ +PYKCP C K+FS + + H R
Sbjct: 123 AHQRTHTGE--------------------------KPYKCPE--CGKSFSREDNLHTHQR 154
Query: 121 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
THTGEKPY+C C KSF L H RTHTG
Sbjct: 155 THTGEKPYKCPE--CGKSFSRRDALNVHQRTHTG 186
Score = 100 bits (251), Expect = 3e-27
Identities = 51/133 (38%), Positives = 60/133 (45%), Gaps = 32/133 (24%)
Query: 22 AFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLI 81
+ S A GEKPY C C KSF S L +H RTHTG+
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGE------------ 47
Query: 82 VREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKT 141
+PYKCP C K+FS + H RTHTGEKPY+C C KSF
Sbjct: 48 --------------KPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQ 89
Query: 142 SGDLQKHVRTHTG 154
+L+ H RTHTG
Sbjct: 90 RANLRAHQRTHTG 102
Score = 95.6 bits (239), Expect = 2e-25
Identities = 50/127 (39%), Positives = 62/127 (48%), Gaps = 32/127 (25%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H R H+G +PY CP C K+FS +AH RTHTGEKPY+C C KSF +L
Sbjct: 95 AHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLH 150
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
H RTHTG+ +PYKC C K+FS + + H R
Sbjct: 151 THQRTHTGE--------------------------KPYKC--PECGKSFSRRDALNVHQR 182
Query: 121 THTGEKP 127
THTG+K
Sbjct: 183 THTGKKT 189
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 111 bits (281), Expect = 2e-32
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 32/150 (21%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
SG +CP C K F ++Y K H R HTGEKP+ C C K + +L +H
Sbjct: 2 SSGSSGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEAR 57
Query: 66 HTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
+ ++ + + C V C++ F + + H+ +HTGE
Sbjct: 58 NC-----------------------MNRSEQVFTCSV--CQETFRRRMELRLHMVSHTGE 92
Query: 126 KPYRCAHEFCSKSFKTSGDLQKH-VRTHTG 154
PY+C+ CS+ F DLQ H ++ H+G
Sbjct: 93 MPYKCSS--CSQQFMQKKDLQSHMIKLHSG 120
Score = 82.9 bits (206), Expect = 3e-21
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 36/130 (27%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR---THTGEKPYRCAHEFCSKSFKTSG 57
VH R H+G +P++CP C K + + + H + E+ + C+ C ++F+
Sbjct: 25 VHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRM 80
Query: 58 DLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKA 117
+L+ H+ +HTG+ PYKC C + F + ++
Sbjct: 81 ELRLHMVSHTGE--------------------------MPYKC--SSCSQQFMQKKDLQS 112
Query: 118 H-IRTHTGEK 126
H I+ H+G
Sbjct: 113 HMIKLHSGPS 122
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 106 bits (266), Expect = 1e-30
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 30/116 (25%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPY 98
E+PY C E C + F SG L +H+R HTG+ +P+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ--------------------------KPF 35
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+C C + FS HIRTHTGEKP+ C + C + F S + ++H + H
Sbjct: 36 QC--RICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHLR 87
Score = 102 bits (256), Expect = 4e-29
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 30/117 (25%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
RPY CPVE C++ FS S HIR HTG+KP++C C ++F S L H+RTHTG+
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Query: 70 YTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+P+ C + C + F+ RK H + H +K
Sbjct: 61 --------------------------KPFAC--DICGRKFARSDERKRHTKIHLRQK 89
Score = 86.0 bits (214), Expect = 7e-23
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+RIH+G +P++C C + FS HIRTHTGEKP+ C + C + F S + ++
Sbjct: 25 HIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKR 80
Query: 62 HVRTHTG 68
H + H
Sbjct: 81 HTKIHLR 87
Score = 50.2 bits (121), Expect = 5e-09
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
H+R H+G +P+ C + C + F+ RK H + H +K
Sbjct: 53 HIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHLRQK 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 100 bits (253), Expect = 1e-28
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 32/126 (25%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
P+KC E C K FS + K H+R HTG KPY+C C + S L KH+R
Sbjct: 3 SGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRI 58
Query: 66 HTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
H+ + RP+KC + C A H+R+HTG+
Sbjct: 59 HSDE--------------------------RPFKC--QICPYASRNSSQLTVHLRSHTGD 90
Query: 126 KPYRCA 131
Sbjct: 91 SGPSSG 96
Score = 97.9 bits (245), Expect = 2e-27
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 32/120 (26%)
Query: 35 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSG 94
+ P++C C K F L+ H+R HTG
Sbjct: 2 SSGSSGPHKCEV--CGKCFSRKDKLKTHMRCHTGV------------------------- 34
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+PYKC + C+ A + S H+R H+ E+P++C + C + + S L H+R+HTG
Sbjct: 35 -KPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLTVHLRSHTG 89
Score = 78.6 bits (195), Expect = 7e-20
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H+R H+G++PYKC + C+ A + S H+R H+ E+P++C + C + + S L
Sbjct: 26 THMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLT 81
Query: 61 KHVRTHTG 68
H+R+HTG
Sbjct: 82 VHLRSHTG 89
Score = 59.0 bits (144), Expect = 2e-12
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 45
HLRIHS RP+KC + C A H+R+HTG+
Sbjct: 54 KHLRIHSDERPFKC--QICPYASRNSSQLTVHLRSHTGDSGPSSG 96
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 99.4 bits (249), Expect = 8e-28
Identities = 34/142 (23%), Positives = 49/142 (34%), Gaps = 37/142 (26%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 63
SG + Y C C K+F+ + R H+ H G +PY C C K FK L H+
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHM 57
Query: 64 RTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 123
+ HTG I+PY+C C K F + H +
Sbjct: 58 KIHTG--------------------------IKPYEC--NICAKRFM--WRDSFHRHVTS 87
Query: 124 GEKPYRCAHEFCSKSFKTSGDL 145
K Y A ++ +
Sbjct: 88 CTKSYEAAK--AEQNTTEASGP 107
Score = 87.9 bits (219), Expect = 2e-23
Identities = 31/121 (25%), Positives = 41/121 (33%), Gaps = 35/121 (28%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHS 93
+G+K Y C C KSF +H+ H G
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGL------------------------ 35
Query: 94 GIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
RPY C V C K F ++ H++ HTG KPY C C+K F H +
Sbjct: 36 --RPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSF--HRHVTS 87
Query: 154 G 154
Sbjct: 88 C 88
Score = 74.0 bits (183), Expect = 6e-18
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 34/110 (30%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H+ +H G+RPY C V C K F ++ H++ HTG KPY C C+K F
Sbjct: 27 RHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSF- 81
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFS 110
H + S + Y+ E+ +
Sbjct: 82 ---------------------------HRHVTSCTKSYEA--AKAEQNTT 102
Score = 58.2 bits (142), Expect = 7e-12
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDL 59
H++IH+GI+PY+C C K F + H + K Y A ++ +
Sbjct: 55 GHMKIHTGIKPYEC--NICAKRFM--WRDSFHRHVTSCTKSYEAAK--AEQNTTEASGP 107
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 98.7 bits (247), Expect = 1e-27
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 32/130 (24%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
+ + C ++C + F+ Y+ H RTHT E+PY C C K+F+ L+
Sbjct: 7 GGRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLR 62
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR 120
H H+ + +P+KC + C K F + H
Sbjct: 63 DHRYIHSKE--------------------------KPFKC--QECGKGFCQSRTLAVHKT 94
Query: 121 THTGEKPYRC 130
H
Sbjct: 95 LHMQTSSPTA 104
Score = 95.6 bits (239), Expect = 2e-26
Identities = 34/123 (27%), Positives = 45/123 (36%), Gaps = 32/123 (26%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRI 91
+K + C +FC + F S +L H RTHT +
Sbjct: 8 GRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDE---------------------- 43
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 151
RPY C + C KAF Q + H H+ EKP++C C K F S L H
Sbjct: 44 ----RPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQE--CGKGFCQSRTLAVHKTL 95
Query: 152 HTG 154
H
Sbjct: 96 HMQ 98
Score = 74.4 bits (184), Expect = 4e-18
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
+ + C ++C + F+ Y+ H RTHT E+PY C C K+F+ L+
Sbjct: 7 GGRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLR 62
Query: 147 KHVRTHTG 154
H H+
Sbjct: 63 DHRYIHSK 70
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 94.6 bits (236), Expect = 5e-26
Identities = 35/132 (26%), Positives = 52/132 (39%), Gaps = 34/132 (25%)
Query: 22 AFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLI 81
+ + R H + P C+K + S L+ H+RTHTG+
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG------CTKVYTKSSHLKAHLRTHTGE------------ 43
Query: 82 VREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKT 141
+PYKC E C+ F+ H R HTG KP++C C++SF
Sbjct: 44 --------------KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC--GVCNRSFSR 87
Query: 142 SGDLQKHVRTHT 153
S L H++ H
Sbjct: 88 SDHLALHMKRHQ 99
Score = 93.8 bits (234), Expect = 9e-26
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 28/118 (23%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
R + C C K ++ KAH+RTHTGEKPY+C E C F S +L +H R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 66 HTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 123
HT G +P++C V C ++FS H++ H
Sbjct: 70 HT--------------------------GAKPFQCGV--CNRSFSRSDHLALHMKRHQ 99
Score = 83.4 bits (207), Expect = 1e-21
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
HLR H+G +PYKC E C+ F+ H R HTG KP++C C++SF S L
Sbjct: 36 HLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC--GVCNRSFSRSDHLAL 93
Query: 62 HVRTHT 67
H++ H
Sbjct: 94 HMKRHQ 99
Score = 82.3 bits (204), Expect = 3e-21
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 151
R + C C K ++ KAH+RTHTGEKPY+C E C F S +L +H R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 152 HTG 154
HTG
Sbjct: 70 HTG 72
Score = 41.8 bits (99), Expect = 7e-06
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 108 AFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + R H + P C+K + S L+ H+RTHTG
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG------CTKVYTKSSHLKAHLRTHTG 42
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 92.9 bits (232), Expect = 1e-25
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 36/121 (29%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
++P++C C + FS HIRTHTGEKP+ C C + F S + ++H
Sbjct: 1 MKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQHI 56
Query: 69 KYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYS---RKAHIRTHTGE 125
P + E+ S Y A ++ GE
Sbjct: 57 L---------------------------PILE--DKVEELLSKNYHLENEVARLKKLVGE 87
Query: 126 K 126
+
Sbjct: 88 R 88
Score = 82.9 bits (206), Expect = 1e-21
Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 36/118 (30%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYK 99
KP++C C ++F S L H+RTHTG+ +P+
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGE--------------------------KPFA 33
Query: 100 CPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV---RTHTG 154
C + C + F+ RK H P + + + L+ V + G
Sbjct: 34 C--DICGRKFARSDERKRHRDIQH-ILPILE--DKVEELLSKNYHLENEVARLKKLVG 86
Score = 74.5 bits (184), Expect = 2e-18
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
++P++C C + FS HIRTHTGEKP+ C C + F S + ++H
Sbjct: 1 MKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQHI 56
Query: 155 K 155
Sbjct: 57 L 57
Score = 71.4 bits (176), Expect = 3e-17
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H+R H+G +P+ C + C + F+ RK H P + + + L+
Sbjct: 22 HIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQH-ILPILE--DKVEELLSKNYHLEN 76
Query: 62 HV---RTHTG 68
V + G
Sbjct: 77 EVARLKKLVG 86
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 87.6 bits (218), Expect = 1e-23
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 29/105 (27%)
Query: 36 HTGEKPYRCAHEFCSKSFKTSGDLQKHVR-THTGKYTPGPGIDSRLIVREDFVHLRIHSG 94
+G C C + F L H + H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ------------------------- 36
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSF 139
+ + CP C K+F+ + K H++ H+ + Y C EF S
Sbjct: 37 -KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC--EFSGPSS 78
Score = 84.5 bits (210), Expect = 2e-22
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 29/105 (27%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRCAHEFCSKSFKTSGDLQKHVR 64
SG C C + FS + H + H +K + C C KSF L++H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 65 THTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAF 109
H+ R Y C +
Sbjct: 62 LHSDT--------------------------RDYICEF--SGPSS 78
Score = 83.8 bits (208), Expect = 4e-22
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRCAHEFCSKSFKTSGDLQKHVR 150
SG C C + FS + H + H +K + C C KSF L++H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 151 THTG 154
H+
Sbjct: 62 LHSD 65
Score = 65.6 bits (161), Expect = 4e-15
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 1 VHLRI-HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSF 53
H + H + + CP C K+F+ + K H++ H+ + Y C EF S
Sbjct: 27 HHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC--EFSGPSS 78
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 84.9 bits (211), Expect = 1e-22
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 29/100 (29%)
Query: 30 KAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHL 89
+ RTH+GEKPY C C F SG ++ H+ +
Sbjct: 4 GSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTE-------------------- 41
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT-HTGEKPY 128
+ + C +C+ + + H+R H+ P
Sbjct: 42 ----NVAKFHC--PHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 78.3 bits (194), Expect = 5e-20
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYRCAHEFCSKSFKTSGDL 59
R HSG +PY+C C F+ + K HI E + C H C DL
Sbjct: 6 SGRTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDL 61
Query: 60 QKHVRT-HTG 68
H+R H+
Sbjct: 62 GVHLRKQHSY 71
Score = 78.3 bits (194), Expect = 5e-20
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYRCAHEFCSKSFKTSGDL 145
R HSG +PY+C C F+ + K HI E + C H C DL
Sbjct: 6 SGRTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDL 61
Query: 146 QKHVRT-HTG 154
H+R H+
Sbjct: 62 GVHLRKQHSY 71
Score = 61.0 bits (149), Expect = 3e-13
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 116 KAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ RTH+GEKPY C C F SG ++ H+
Sbjct: 4 GSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHT 40
Score = 49.4 bits (119), Expect = 7e-09
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 1 VHLRIHSG--IRPYKCPVEYCEKAFSTQYSRKAHIRT-HTGEKPY 42
+H+ + + C +C+ + + H+R H+ P
Sbjct: 33 MHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 24.8 bits (55), Expect = 6.6
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 143 GDLQKHVRTHTG 154
G RTH+G
Sbjct: 1 GSSGSSGRTHSG 12
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 85.2 bits (212), Expect = 1e-22
Identities = 36/122 (29%), Positives = 44/122 (36%), Gaps = 31/122 (25%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
SG C E C K F Y H +H+GEKPY C C FK + HVR+
Sbjct: 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRS 57
Query: 66 HTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTG 124
H G S +PY C + C K FS HI + H+G
Sbjct: 58 HDG------------------------SVGKPYIC--QSCGKGFSRPDHLNGHIKQVHSG 91
Query: 125 EK 126
Sbjct: 92 PS 93
Score = 84.5 bits (210), Expect = 3e-22
Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 35/122 (28%)
Query: 36 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGI 95
+G C E C K F+ L +H +H+G+
Sbjct: 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGE-------------------------- 33
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYRCAHEFCSKSFKTSGDLQKHV-RTH 152
+PY CPV C F + H+R+H G KPY C C K F L H+ + H
Sbjct: 34 KPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLNGHIKQVH 89
Query: 153 TG 154
+G
Sbjct: 90 SG 91
Score = 67.5 bits (166), Expect = 1e-15
Identities = 26/71 (36%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYRCAHEFCSKSFKTSGD 58
H HSG +PY CPV C F + H+R+H G KPY C C K F
Sbjct: 25 RHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDH 80
Query: 59 LQKHV-RTHTG 68
L H+ + H+G
Sbjct: 81 LNGHIKQVHSG 91
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 84.9 bits (211), Expect = 2e-22
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 30/117 (25%)
Query: 36 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGI 95
T A C K++ S L+ H+RTHTG+
Sbjct: 2 RTATHTCDYAG--CGKTYTKSSHLKAHLRTHTGE-------------------------- 33
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
+PY C + C F+ H R HTG +P++C C ++F S L H++ H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 82.2 bits (204), Expect = 2e-21
Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 30/117 (25%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
+ C K ++ KAH+RTHTGEKPY C + C F S +L +H R
Sbjct: 2 RTATHTCDYA--GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 66 HTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 122
HT G RP++C C++AFS H++ H
Sbjct: 60 HT--------------------------GHRPFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 76.8 bits (190), Expect = 3e-19
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
HLR H+G +PY C + C F+ H R HTG +P++C C ++F S L
Sbjct: 26 HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFSRSDHLAL 83
Query: 62 HVRTH 66
H++ H
Sbjct: 84 HMKRH 88
Score = 74.5 bits (184), Expect = 2e-18
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 151
+ C K ++ KAH+RTHTGEKPY C + C F S +L +H R
Sbjct: 2 RTATHTCDYA--GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 152 HTG 154
HTG
Sbjct: 60 HTG 62
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 83.7 bits (208), Expect = 5e-22
Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 28/108 (25%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRI 91
RTHTGEKPY C+H C K+F+ L H + +
Sbjct: 6 SGRTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDP---------------------- 41
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSF 139
+ + C C K F+ + + H G + S
Sbjct: 42 NFVPAAFVCS--KCGKTFTRRNTMARHADNCAGPDGVEGEN--SGPSS 85
Score = 68.3 bits (168), Expect = 4e-16
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE----KPYRCAHEFCSKSFKTS 56
R H+G +PY C +C+K F + H + + + C+ C K+F
Sbjct: 5 SSGRTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRR 60
Query: 57 GDLQKHVRTHTG 68
+ +H G
Sbjct: 61 NTMARHADNCAG 72
Score = 68.3 bits (168), Expect = 4e-16
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE----KPYRCAHEFCSKSFKTS 142
R H+G +PY C +C+K F + H + + + C+ C K+F
Sbjct: 5 SSGRTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRR 60
Query: 143 GDLQKHVRTHTG 154
+ +H G
Sbjct: 61 NTMARHADNCAG 72
Score = 54.5 bits (132), Expect = 1e-10
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTAEVP 161
RTHTGEKPY C+H C K+F+ L H + +
Sbjct: 6 SGRTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAA 47
Score = 53.3 bits (129), Expect = 3e-10
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 1 VHLRIHSG----IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSF 53
+H + + + C C K F+ + + H G + S
Sbjct: 33 MHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCAGPDGVEGEN--SGPSS 85
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 80.4 bits (199), Expect = 1e-20
Identities = 32/112 (28%), Positives = 41/112 (36%), Gaps = 29/112 (25%)
Query: 42 YRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCP 101
Y C E C K+FK L+ H +HT + PY+CP
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQ--------------------------LPYECP 35
Query: 102 VEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTH 152
E C+K FS K H + H G + + CS KT KHV H
Sbjct: 36 HEGCDKRFSLPSRLKRHEKVHAGYPCKKD--DSCSFVGKTWTLYLKHVAECH 85
Score = 78.4 bits (194), Expect = 5e-20
Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 29/112 (25%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYT 71
Y C E C KAF K H +HT + PY C HE C K F L++H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY-- 59
Query: 72 PGPGIDSRLIVREDFVHLRIHSGIRPYKCPV-EYCEKAFSTQYSRKAHIRTH 122
K + K ++ K H
Sbjct: 60 ------------------------PCKKDDSCSFVGKTWTL--YLKHVAECH 85
Score = 77.7 bits (192), Expect = 1e-19
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
Y C E C KAF K H +HT + PY C HE C K F L++H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 74.2 bits (183), Expect = 3e-18
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
VH H+ PY+CP E C+K FS K H + H G + + CS KT
Sbjct: 21 VHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD--DSCSFVGKTWTLYL 78
Query: 61 KHV-RTH 66
KHV H
Sbjct: 79 KHVAECH 85
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 77.8 bits (192), Expect = 7e-20
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
S IR + C C K + KAH RTHTGEKP+ C+ + C + F S +L +
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 62 HVRTH 66
H RTH
Sbjct: 68 HRRTH 72
Score = 77.8 bits (192), Expect = 7e-20
Identities = 26/65 (40%), Positives = 34/65 (52%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 147
S IR + C C K + KAH RTHTGEKP+ C+ + C + F S +L +
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 148 HVRTH 152
H RTH
Sbjct: 68 HRRTH 72
Score = 61.2 bits (149), Expect = 2e-13
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 26/95 (27%)
Query: 28 SRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFV 87
+ + + C+H C K++ S L+ H RTHT
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------------- 43
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 122
G +P+ C + CE+ F+ H RTH
Sbjct: 44 ------GEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 48.2 bits (115), Expect = 2e-08
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 114 SRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + + C+H C K++ S L+ H RTHTG
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTG 44
Score = 43.9 bits (104), Expect = 6e-07
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 36
H R H+G +P+ C + CE+ F+ H RTH
Sbjct: 37 AHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 75.6 bits (187), Expect = 5e-19
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
H + +PYKC + C+ +F + + +H HTGEKPYRC C F +L+
Sbjct: 7 HHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLK 62
Query: 61 KHVRTHTG 68
H R H+G
Sbjct: 63 THTRIHSG 70
Score = 75.6 bits (187), Expect = 5e-19
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
H + +PYKC + C+ +F + + +H HTGEKPYRC C F +L+
Sbjct: 7 HHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLK 62
Query: 147 KHVRTHTG 154
H R H+G
Sbjct: 63 THTRIHSG 70
Score = 75.6 bits (187), Expect = 6e-19
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 30/97 (30%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRI 91
H +KPY+C C SF+ G+L H HTG+
Sbjct: 8 HSHMTHSDKPYKCDR--CQASFRYKGNLASHKTVHTGE---------------------- 43
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
+PY+C C F+ + K H R H+GEKPY
Sbjct: 44 ----KPYRC--NICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 51.7 bits (125), Expect = 9e-10
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
H +H+G +PY+C C F+ + K H R H+GEKPY
Sbjct: 35 SHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKPY 74
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 75.5 bits (187), Expect = 6e-19
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
HL IHS RPY C +YC K F + K H HTGEKP++C C K+F S +L
Sbjct: 19 THLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLI 74
Query: 61 KHVRTHTG 68
H R HTG
Sbjct: 75 THSRKHTG 82
Score = 75.5 bits (187), Expect = 6e-19
Identities = 32/68 (47%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 146
HL IHS RPY C +YC K F + K H HTGEKP++C C K+F S +L
Sbjct: 19 THLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLI 74
Query: 147 KHVRTHTG 154
H R HTG
Sbjct: 75 THSRKHTG 82
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 74.5 bits (184), Expect = 1e-18
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 149
S P KC C + S++ + + H R H ++P++C + CS K +L KH+
Sbjct: 2 SSGSSGHPEKC--SECSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHM 57
Query: 150 RTHTGKYTAEVPG 162
+ G + G
Sbjct: 58 KKFHGDMSGPSSG 70
Score = 74.1 bits (183), Expect = 2e-18
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 63
S P KC C + S++ + + H R H ++P++C + CS K +L KH+
Sbjct: 2 SSGSSGHPEKC--SECSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHM 57
Query: 64 RTHTG-KYTPGPG 75
+ G P G
Sbjct: 58 KKFHGDMSGPSSG 70
Score = 69.8 bits (172), Expect = 8e-17
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 30/98 (30%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHS 93
+ + P +C+ CS S + L+ H R H
Sbjct: 2 SSGSSGHPEKCSE--CSYSCSSKAALRIHERIHCTD------------------------ 35
Query: 94 GIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 131
RP+KC YC + H++ G+ +
Sbjct: 36 --RPFKC--NYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 50.6 bits (122), Expect = 2e-09
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 45
+H RIH RP+KC YC + H++ G+ +
Sbjct: 27 IHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 72.9 bits (180), Expect = 7e-18
Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
R YKC + C K+FS H RTHTGEKPY+C C K+F L
Sbjct: 9 SEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFIQRSHLIG 64
Query: 62 HVRTHTG 68
H R HTG
Sbjct: 65 HHRVHTG 71
Score = 72.9 bits (180), Expect = 7e-18
Identities = 28/67 (41%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 147
R YKC + C K+FS H RTHTGEKPY+C C K+F L
Sbjct: 9 SEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFIQRSHLIG 64
Query: 148 HVRTHTG 154
H R HTG
Sbjct: 65 HHRVHTG 71
Score = 72.1 bits (178), Expect = 1e-17
Identities = 30/97 (30%), Positives = 36/97 (37%), Gaps = 30/97 (30%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRI 91
+ Y+C C KSF S DL KH RTHTG+
Sbjct: 9 SEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGE---------------------- 44
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
+PYKC + C KAF + H R HTG P
Sbjct: 45 ----KPYKC--DECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 50.1 bits (121), Expect = 3e-09
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
H R H+G +PYKC + C KAF + H R HTG P
Sbjct: 36 KHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGPS 75
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 70.8 bits (174), Expect = 3e-17
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 63
+ +RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHI 69
Query: 64 RTHT 67
RTHT
Sbjct: 70 RTHT 73
Score = 70.8 bits (174), Expect = 3e-17
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 149
+ +RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHI 69
Query: 150 RTHT 153
RTHT
Sbjct: 70 RTHT 73
Score = 63.5 bits (155), Expect = 2e-14
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 30/95 (31%)
Query: 29 RKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVH 88
++ +PY C E C + F S +L +H+R HT
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHT--------------------- 45
Query: 89 LRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 123
G +P++C + C + FS HIRTHT
Sbjct: 46 -----GQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
Score = 52.7 bits (127), Expect = 4e-10
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 115 RKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
++ +PY C E C + F S +L +H+R HTG
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTG 46
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 70.2 bits (173), Expect = 7e-17
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
IHSG +PY C C KAFS H R HTGEKPY+C C K+F + L
Sbjct: 5 SSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLIN 60
Query: 62 HVRTHTG 68
H R HT
Sbjct: 61 HQRIHTS 67
Score = 70.2 bits (173), Expect = 7e-17
Identities = 30/67 (44%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 147
IHSG +PY C C KAFS H R HTGEKPY+C C K+F + L
Sbjct: 5 SSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLIN 60
Query: 148 HVRTHTG 154
H R HT
Sbjct: 61 HQRIHTS 67
Score = 68.3 bits (168), Expect = 4e-16
Identities = 30/97 (30%), Positives = 35/97 (36%), Gaps = 30/97 (30%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRI 91
H+GEKPY C C K+F S L +H R HTG+
Sbjct: 5 SSGIHSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGE---------------------- 40
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
+PYKC C KAFS H R HT
Sbjct: 41 ----KPYKC--LECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 50.2 bits (121), Expect = 2e-09
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
H R+H+G +PYKC C KAFS H R HT
Sbjct: 33 HQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHTSGPSS 71
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 69.1 bits (170), Expect = 2e-16
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT--HTGEKPYRCAHEFCSKSFKTSGDLQK 61
G Y+C + C + ++ + H T K Y C FC K F ++
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPC--PFCFKEFTRKDNMTA 58
Query: 62 HVRTHTG 68
HV+
Sbjct: 59 HVKIIHK 65
Score = 69.1 bits (170), Expect = 2e-16
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 6/67 (8%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT--HTGEKPYRCAHEFCSKSFKTSGDLQK 147
G Y+C + C + ++ + H T K Y C FC K F ++
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPC--PFCFKEFTRKDNMTA 58
Query: 148 HVRTHTG 154
HV+
Sbjct: 59 HVKIIHK 65
Score = 69.1 bits (170), Expect = 2e-16
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 28/91 (30%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHS 93
T GE YRC + CS+ + + +H T
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSH------------------------KR 36
Query: 94 GIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 124
++ Y CP C K F+ + + AH++
Sbjct: 37 NVKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65
Score = 38.3 bits (90), Expect = 6e-05
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 2 HLRI--HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 38
H ++ Y CP C K F+ + + AH++
Sbjct: 29 HYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 68.2 bits (167), Expect = 5e-16
Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT---GEKPYRCAHEFCSKSFKTSGDLQKH 62
SG +C E C + S H R H + C EFC K F+ + H
Sbjct: 2 SSGSSGLQC--EICGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAH 57
Query: 63 VRTHTGKYTPGP 74
P
Sbjct: 58 RSKSHPALLLAP 69
Score = 65.1 bits (159), Expect = 8e-15
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT---GEKPYRCAHEFCSKSFKTSGDLQKH 148
SG +C E C + S H R H + C EFC K F+ + H
Sbjct: 2 SSGSSGLQC--EICGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAH 57
Query: 149 VRTHTGK 155
Sbjct: 58 RSKSHPA 64
Score = 63.6 bits (155), Expect = 3e-14
Identities = 16/95 (16%), Positives = 22/95 (23%), Gaps = 27/95 (28%)
Query: 36 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGI 95
+G +C E C + + L H R H
Sbjct: 2 SSGSSGLQC--EICGFTCRQKASLNWHQRKHAET-----------------------VAA 36
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+ C E+C K F S AH
Sbjct: 37 LRFPC--EFCGKRFEKPDSVAAHRSKSHPALLLAP 69
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 60.0 bits (146), Expect = 4e-13
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKP+ C C F S +L +H R+H+G
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG 39
Score = 60.0 bits (146), Expect = 4e-13
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKP+ C C F S +L +H R+H+G
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG 39
Score = 56.9 bits (138), Expect = 4e-12
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 45
+G +P+ C C FS H R+H+G KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 56.9 bits (138), Expect = 4e-12
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 131
+G +P+ C C FS H R+H+G KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 59.8 bits (146), Expect = 5e-13
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTG 68
R + C V C +AF+ Q K H R+HT EKPY C C+++F L +H + H+G
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSG 56
Score = 59.8 bits (146), Expect = 5e-13
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTG 154
R + C V C +AF+ Q K H R+HT EKPY C C+++F L +H + H+G
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSG 56
Score = 45.6 bits (109), Expect = 1e-07
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 31/88 (35%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYK 99
+ + C E C+++F L++H R+HT + +PY
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNE--------------------------KPYP 32
Query: 100 CPVEYCEKAFSTQYSRKAHI-RTHTGEK 126
C + C +AF+ + H + H+G
Sbjct: 33 CGL--CNRAFTRRDLLIRHAQKIHSGNL 58
Score = 41.3 bits (98), Expect = 5e-06
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEK 40
H R H+ +PY C + C +AF+ + H + H+G
Sbjct: 21 HYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGNL 58
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 56.4 bits (137), Expect = 6e-12
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ GEKPY C E C F+ L+ H+R HTG
Sbjct: 1 GSSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTG 36
Score = 56.4 bits (137), Expect = 6e-12
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ GEKPY C E C F+ L+ H+R HTG
Sbjct: 1 GSSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTG 36
Score = 53.3 bits (129), Expect = 1e-10
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
G +PY C E C F + K+H+R HTG P
Sbjct: 2 SSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 53.3 bits (129), Expect = 1e-10
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
G +PY C E C F + K+H+R HTG P
Sbjct: 2 SSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPS 40
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 56.0 bits (136), Expect = 1e-11
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C C KAFS + S H R H+G+KP +
Sbjct: 2 SSGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 56.0 bits (136), Expect = 1e-11
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C C KAFS + S H R H+G+KP +
Sbjct: 2 SSGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 48.7 bits (117), Expect = 7e-09
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY C+ C K+F L H R H+G
Sbjct: 3 SGSSGTGEKPYECSV--CGKAFSHRQSLSVHQRIHSG 37
Score = 48.7 bits (117), Expect = 7e-09
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY C+ C K+F L H R H+G
Sbjct: 3 SGSSGTGEKPYECSV--CGKAFSHRQSLSVHQRIHSG 37
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 55.6 bits (135), Expect = 1e-11
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G PY+C C KAFS +Y +H RTH GEKP +
Sbjct: 2 SSGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 55.6 bits (135), Expect = 1e-11
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G PY+C C KAFS +Y +H RTH GEKP +
Sbjct: 2 SSGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGE PY C C K+F L H RTH G
Sbjct: 3 SGSSGTGENPYECHE--CGKAFSRKYQLISHQRTHAG 37
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGE PY C C K+F L H RTH G
Sbjct: 3 SGSSGTGENPYECHE--CGKAFSRKYQLISHQRTHAG 37
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.8 bits (133), Expect = 2e-11
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C + C KAFS S H R H+GEKP +
Sbjct: 2 SSGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 54.8 bits (133), Expect = 2e-11
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C + C KAFS S H R H+GEKP +
Sbjct: 2 SSGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 48.3 bits (116), Expect = 8e-09
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY C C K+F L +H R H+G
Sbjct: 3 SGSSGTGEKPYECDV--CRKAFSHHASLTQHQRVHSG 37
Score = 48.3 bits (116), Expect = 8e-09
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY C C K+F L +H R H+G
Sbjct: 3 SGSSGTGEKPYECDV--CRKAFSHHASLTQHQRVHSG 37
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 4e-11
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
G + YKC + C K FS + H R HTGEKP
Sbjct: 2 SSGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 4e-11
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
G + YKC + C K FS + H R HTGEKP
Sbjct: 2 SSGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 7e-09
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ GEK Y+C C K F S LQ H R HTG
Sbjct: 3 SGSSGMGEKCYKCDV--CGKEFSQSSHLQTHQRVHTG 37
Score = 48.7 bits (117), Expect = 7e-09
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ GEK Y+C C K F S LQ H R HTG
Sbjct: 3 SGSSGMGEKCYKCDV--CGKEFSQSSHLQTHQRVHTG 37
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.5 bits (132), Expect = 4e-11
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC E C K ++++++ H + HTGE+P
Sbjct: 3 SGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 54.5 bits (132), Expect = 4e-11
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC E C K ++++++ H + HTGE+P
Sbjct: 3 SGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 49.1 bits (118), Expect = 4e-09
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K + + +L H + HTG
Sbjct: 2 SSGSSGTGEKPYKCEK--CGKGYNSKFNLDMHQKVHTG 37
Score = 49.1 bits (118), Expect = 4e-09
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K + + +L H + HTG
Sbjct: 2 SSGSSGTGEKPYKCEK--CGKGYNSKFNLDMHQKVHTG 37
Score = 26.0 bits (58), Expect = 1.4
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
+H ++H+G RP
Sbjct: 30 MHQKVHTGERPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 54.0 bits (131), Expect = 5e-11
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PY+C C+KAF+T+ + H RTHTGE
Sbjct: 2 SSGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 54.0 bits (131), Expect = 5e-11
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PY+C C+KAF+T+ + H RTHTGE
Sbjct: 2 SSGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 50.2 bits (121), Expect = 2e-09
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY C C K+F T +L H RTHTG
Sbjct: 2 SSGSSGTGEKPYECNE--CQKAFNTKSNLMVHQRTHTG 37
Score = 50.2 bits (121), Expect = 2e-09
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY C C K+F T +L H RTHTG
Sbjct: 2 SSGSSGTGEKPYECNE--CQKAFNTKSNLMVHQRTHTG 37
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 54.1 bits (131), Expect = 5e-11
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ GEKPY+C E C F L+ HV HTG
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTG 36
Score = 54.1 bits (131), Expect = 5e-11
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ GEKPY+C E C F L+ HV HTG
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTG 36
Score = 51.0 bits (123), Expect = 8e-10
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
G +PYKC E C F +AH+ HTG P
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 51.0 bits (123), Expect = 8e-10
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
G +PYKC E C F +AH+ HTG P
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 5e-11
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKP++C C +F S L KH+R+H
Sbjct: 2 SSGSSGTGEKPFQCKE--CGMNFSWSCSLFKHLRSHER 37
Score = 54.1 bits (131), Expect = 5e-11
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKP++C C +F S L KH+R+H
Sbjct: 2 SSGSSGTGEKPFQCKE--CGMNFSWSCSLFKHLRSHER 37
Score = 51.8 bits (125), Expect = 4e-10
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +P++C + C FS S H+R+H P +
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 51.8 bits (125), Expect = 4e-10
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +P++C + C FS S H+R+H P +
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 6e-11
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +PY C C K FS + AH RTHTGEKP
Sbjct: 2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 54.1 bits (131), Expect = 6e-11
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +PY C C K FS + AH RTHTGEKP
Sbjct: 2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 3e-09
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + +GEKPY C C K+F L H RTHTG
Sbjct: 2 SSGSSGSGEKPYGCNE--CGKTFSQKSILSAHQRTHTG 37
Score = 49.5 bits (119), Expect = 3e-09
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + +GEKPY C C K+F L H RTHTG
Sbjct: 2 SSGSSGSGEKPYGCNE--CGKTFSQKSILSAHQRTHTG 37
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 6e-11
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C C K+F+ + H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 54.1 bits (131), Expect = 6e-11
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C C K+F+ + H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 48.7 bits (117), Expect = 5e-09
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY C+ C KSF L H + HTG
Sbjct: 3 SGSSGTGEKPYECSI--CGKSFTKKSQLHVHQQIHTG 37
Score = 48.7 bits (117), Expect = 5e-09
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY C+ C KSF L H + HTG
Sbjct: 3 SGSSGTGEKPYECSI--CGKSFTKKSQLHVHQQIHTG 37
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 6e-11
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C C KAFS + S H HTG+KP +
Sbjct: 3 SGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 54.1 bits (131), Expect = 6e-11
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C C KAFS + S H HTG+KP +
Sbjct: 3 SGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 46.8 bits (112), Expect = 3e-08
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY C C K+F L H HTG
Sbjct: 3 SGSSGTGEKPYECNQ--CGKAFSVRSSLTTHQAIHTG 37
Score = 46.8 bits (112), Expect = 3e-08
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY C C K+F L H HTG
Sbjct: 3 SGSSGTGEKPYECNQ--CGKAFSVRSSLTTHQAIHTG 37
Score = 24.8 bits (55), Expect = 3.2
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H IH+G +P
Sbjct: 30 THQAIHTGKKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 7e-11
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
S +PYKC E C K ++ + + H R H GEK
Sbjct: 3 SGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 53.7 bits (130), Expect = 7e-11
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
S +PYKC E C K ++ + + H R H GEK
Sbjct: 3 SGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 50.2 bits (121), Expect = 2e-09
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + + EKPY+C C K + +L H R H G
Sbjct: 2 SSGSSGSVEKPYKCED--CGKGYNRRLNLDMHQRVHMG 37
Score = 50.2 bits (121), Expect = 2e-09
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + + EKPY+C C K + +L H R H G
Sbjct: 2 SSGSSGSVEKPYKCED--CGKGYNRRLNLDMHQRVHMG 37
Score = 25.1 bits (56), Expect = 2.7
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
+H R+H G +
Sbjct: 30 MHQRVHMGEKTSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 7e-11
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PYKC C K F+ H HTGEKP +
Sbjct: 2 SSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 7e-11
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PYKC C K F+ H HTGEKP +
Sbjct: 2 SSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 4e-08
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TG+KPY+C C K F + L +H HTG
Sbjct: 2 SSGSSGTGKKPYKCNE--CGKVFTQNSHLARHRGIHTG 37
Score = 46.3 bits (111), Expect = 4e-08
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TG+KPY+C C K F + L +H HTG
Sbjct: 2 SSGSSGTGKKPYKCNE--CGKVFTQNSHLARHRGIHTG 37
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 53.7 bits (130), Expect = 7e-11
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +P+KC C K FS + + H + HTGEKP +
Sbjct: 3 SGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 7e-11
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +P+KC C K FS + + H + HTGEKP +
Sbjct: 3 SGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 48.7 bits (117), Expect = 6e-09
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKP++C C K F L H + HTG
Sbjct: 2 SSGSSGTGEKPFKCVE--CGKGFSRRSALNVHHKLHTG 37
Score = 48.7 bits (117), Expect = 6e-09
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKP++C C K F L H + HTG
Sbjct: 2 SSGSSGTGEKPFKCVE--CGKGFSRRSALNVHHKLHTG 37
Score = 25.2 bits (56), Expect = 3.0
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
VH ++H+G +P
Sbjct: 30 VHHKLHTGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 8e-11
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G++PY C C KAFS S H HTGEKP +
Sbjct: 3 SGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 8e-11
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G++PY C C KAFS S H HTGEKP +
Sbjct: 3 SGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TG KPY C C K+F L H HTG
Sbjct: 2 SSGSSGTGVKPYMCNE--CGKAFSVYSSLTTHQVIHTG 37
Score = 47.1 bits (113), Expect = 3e-08
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TG KPY C C K+F L H HTG
Sbjct: 2 SSGSSGTGVKPYMCNE--CGKAFSVYSSLTTHQVIHTG 37
Score = 24.8 bits (55), Expect = 3.2
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H IH+G +P
Sbjct: 30 THQVIHTGEKPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 8e-11
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 8e-11
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 4e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TG KPY+C C K+F + L +H R HTG
Sbjct: 2 SSGSSGTGGKPYQCNE--CGKAFSQTSKLARHQRVHTG 37
Score = 46.4 bits (111), Expect = 4e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TG KPY+C C K+F + L +H R HTG
Sbjct: 2 SSGSSGTGGKPYQCNE--CGKAFSQTSKLARHQRVHTG 37
Score = 24.8 bits (55), Expect = 3.4
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H R+H+G +P
Sbjct: 30 RHQRVHTGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 8e-11
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G + +KC C+K F+ S H R HTGEKP
Sbjct: 3 SGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 8e-11
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G + +KC C+K F+ S H R HTGEKP
Sbjct: 3 SGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + G+K ++C C K+F S L H R HTG
Sbjct: 2 SSGSSGAGKKLFKCNE--CKKTFTQSSSLTVHQRIHTG 37
Score = 47.1 bits (113), Expect = 2e-08
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + G+K ++C C K+F S L H R HTG
Sbjct: 2 SSGSSGAGKKLFKCNE--CKKTFTQSSSLTVHQRIHTG 37
Score = 25.2 bits (56), Expect = 2.7
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
VH RIH+G +P
Sbjct: 30 VHQRIHTGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 53.7 bits (130), Expect = 9e-11
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G RPY+C C KAF T+ S H R+HTGEKP
Sbjct: 3 SGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 9e-11
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G RPY+C C KAF T+ S H R+HTGEKP
Sbjct: 3 SGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TG++PY C C K+FKT L H R+HTG
Sbjct: 3 SGSSGTGQRPYECIE--CGKAFKTKSSLICHRRSHTG 37
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TG++PY C C K+FKT L H R+HTG
Sbjct: 3 SGSSGTGQRPYECIE--CGKAFKTKSSLICHRRSHTG 37
Score = 24.8 bits (55), Expect = 3.1
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H R H+G +P
Sbjct: 30 CHRRSHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.7 bits (130), Expect = 9e-11
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC + C K+F S H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 9e-11
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC + C K+F S H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-09
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C + C KSF+ L H R HTG
Sbjct: 2 SSGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTG 37
Score = 48.7 bits (117), Expect = 6e-09
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C + C KSF+ L H R HTG
Sbjct: 2 SSGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTG 37
Score = 25.6 bits (57), Expect = 1.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
VH RIH+G +P
Sbjct: 30 VHQRIHTGEKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 55.5 bits (133), Expect = 9e-11
Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 27/125 (21%)
Query: 24 STQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVR 83
S+ S K + TG +RC + CS ++ T +L H+ TG Y
Sbjct: 2 SSGSSGKLYGSIFTGASKFRC--KDCSAAYDTLVELTVHMN-ETGHYR------------ 46
Query: 84 EDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSG 143
+ + S +K +C +C SF++
Sbjct: 47 --------DDNHETDNN--NPKRWSKPRKRSLLEMEGKEDAQKVLKC--MYCGHSFESLQ 94
Query: 144 DLQKH 148
DL H
Sbjct: 95 DLSVH 99
Score = 42.1 bits (98), Expect = 8e-06
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 29/133 (21%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 60
++ I +G ++C + C A+ T H+ TG + + S +
Sbjct: 9 LYGSIFTGASKFRC--KDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 61 KHVRTHTGKYTPGPGIDSRLIVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI- 119
+ + GK + KC C +F + H+
Sbjct: 66 RSLLEMEGK----------------------EDAQKVLKCMY--CGHSFESLQDLSVHMI 101
Query: 120 -RTHTGEKPYRCA 131
H + +
Sbjct: 102 KTKHYQKVSGPSS 114
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 9e-11
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 9e-11
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 49.8 bits (120), Expect = 2e-09
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPYRCA C K+F +L H + HTG
Sbjct: 2 SSGSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTG 37
Score = 49.8 bits (120), Expect = 2e-09
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPYRCA C K+F +L H + HTG
Sbjct: 2 SSGSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTG 37
Score = 24.8 bits (55), Expect = 4.1
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H +IH+G +P
Sbjct: 30 THQKIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PYKC C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 1e-10
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PYKC C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY+C C K+F + L +H R HTG
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFSQTSKLARHQRIHTG 37
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY+C C K+F + L +H R HTG
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFSQTSKLARHQRIHTG 37
Score = 24.8 bits (55), Expect = 4.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 RHQRIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +P++C C K+FS H R HTGE P +
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 53.3 bits (129), Expect = 1e-10
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +P++C C K+FS H R HTGE P +
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 46.4 bits (111), Expect = 4e-08
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKP+ C C KSF + L H R HTG
Sbjct: 3 SGSSGTGEKPHECRE--CGKSFSFNSQLIVHQRIHTG 37
Score = 46.4 bits (111), Expect = 4e-08
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKP+ C C KSF + L H R HTG
Sbjct: 3 SGSSGTGEKPHECRE--CGKSFSFNSQLIVHQRIHTG 37
Score = 25.2 bits (56), Expect = 2.8
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
VH RIH+G P
Sbjct: 30 VHQRIHTGENPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PY C C KAFS++ H+RTH+GEKP
Sbjct: 3 SGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 53.3 bits (129), Expect = 1e-10
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PY C C KAFS++ H+RTH+GEKP
Sbjct: 3 SGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 48.3 bits (116), Expect = 8e-09
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + GEKPY C+ C K+F + L H+RTH+G
Sbjct: 2 SSGSSGAGEKPYGCSE--CGKAFSSKSYLIIHMRTHSG 37
Score = 48.3 bits (116), Expect = 8e-09
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + GEKPY C+ C K+F + L H+RTH+G
Sbjct: 2 SSGSSGAGEKPYGCSE--CGKAFSSKSYLIIHMRTHSG 37
Score = 25.2 bits (56), Expect = 2.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
+H+R HSG +P
Sbjct: 30 IHMRTHSGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C C KAF+ + + H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 1e-10
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C C KAF+ + + H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 2e-08
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPYRC C K+F +L +H R HTG
Sbjct: 2 SSGSSGTGEKPYRCGE--CGKAFAQKANLTQHQRIHTG 37
Score = 47.5 bits (114), Expect = 2e-08
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPYRC C K+F +L +H R HTG
Sbjct: 2 SSGSSGTGEKPYRCGE--CGKAFAQKANLTQHQRIHTG 37
Score = 24.8 bits (55), Expect = 4.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 QHQRIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 53.3 bits (129), Expect = 1e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G + YKC C K FS H + HTGEKP +
Sbjct: 3 SGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 1e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G + YKC C K FS H + HTGEKP +
Sbjct: 3 SGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 45.2 bits (108), Expect = 1e-07
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEK Y+C C K F + L +H + HTG
Sbjct: 3 SGSSGTGEKRYKCNE--CGKVFSRNSQLSQHQKIHTG 37
Score = 41.0 bits (97), Expect = 4e-06
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 28/69 (40%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLRI 91
+ TGEK Y+C C K F + L +H + HTG+
Sbjct: 3 SGSSGTGEKRYKCNE--CGKVFSRNSQLSQHQKIHTGE---------------------- 38
Query: 92 HSGIRPYKC 100
+P
Sbjct: 39 ----KPSGP 43
Score = 25.2 bits (56), Expect = 2.9
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H +IH+G +P
Sbjct: 30 QHQKIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.0 bits (128), Expect = 1e-10
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PYKC C KAF S H R HTG++P +
Sbjct: 3 SGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 53.0 bits (128), Expect = 1e-10
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PYKC C KAF S H R HTG++P +
Sbjct: 3 SGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 47.6 bits (114), Expect = 2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K+F + +H R HTG
Sbjct: 2 SSGSSGTGEKPYKCME--CGKAFGDNSSCTQHQRLHTG 37
Score = 47.6 bits (114), Expect = 2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K+F + +H R HTG
Sbjct: 2 SSGSSGTGEKPYKCME--CGKAFGDNSSCTQHQRLHTG 37
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-10
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +P+KC + C K+F + H HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 52.9 bits (128), Expect = 1e-10
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +P+KC + C K+F + H HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 49.0 bits (118), Expect = 4e-09
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKP++C C KSF L +H HT
Sbjct: 2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTA 37
Score = 49.0 bits (118), Expect = 4e-09
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKP++C C KSF L +H HT
Sbjct: 2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTA 37
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-10
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +P+ C C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 1e-10
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +P+ C C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKP+ C C K+F L +H R HTG
Sbjct: 2 SSGSSGTGEKPFDCID--CGKAFSDHIGLNQHRRIHTG 37
Score = 47.9 bits (115), Expect = 1e-08
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKP+ C C K+F L +H R HTG
Sbjct: 2 SSGSSGTGEKPFDCID--CGKAFSDHIGLNQHRRIHTG 37
Score = 24.4 bits (54), Expect = 4.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 QHRRIHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 52.9 bits (128), Expect = 1e-10
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +P++C C K+FS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 1e-10
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +P++C C K+FS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 48.7 bits (117), Expect = 7e-09
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKP+ CA C KSF S L H R HTG
Sbjct: 3 SGSSGTGEKPFECAE--CGKSFSISSQLATHQRIHTG 37
Score = 48.7 bits (117), Expect = 7e-09
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKP+ CA C KSF S L H R HTG
Sbjct: 3 SGSSGTGEKPFECAE--CGKSFSISSQLATHQRIHTG 37
Score = 24.8 bits (55), Expect = 3.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 THQRIHTGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 1e-10
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G RPY C V C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 1e-10
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G RPY C V C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 49.8 bits (120), Expect = 3e-09
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGE+PY C C K+F +L KH + HTG
Sbjct: 2 SSGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTG 37
Score = 49.8 bits (120), Expect = 3e-09
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGE+PY C C K+F +L KH + HTG
Sbjct: 2 SSGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTG 37
Score = 24.8 bits (55), Expect = 4.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H +IH+G +P
Sbjct: 30 KHQKIHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G R Y+C C KAF+ + + H R HTGEKP +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 2e-10
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G R Y+C C KAF+ + + H R HTGEKP +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGE+ Y C+ C K+F L H R HTG
Sbjct: 3 SGSSGTGERHYECSE--CGKAFARKSTLIMHQRIHTG 37
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGE+ Y C+ C K+F L H R HTG
Sbjct: 3 SGSSGTGERHYECSE--CGKAFARKSTLIMHQRIHTG 37
Score = 24.8 bits (55), Expect = 3.6
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
+H RIH+G +P
Sbjct: 30 MHQRIHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC C KAF+ + H ++HTGE+
Sbjct: 3 SGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 52.9 bits (128), Expect = 2e-10
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC C KAF+ + H ++HTGE+
Sbjct: 3 SGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 50.2 bits (121), Expect = 2e-09
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY+C+ C K+F L H ++HTG
Sbjct: 3 SGSSGTGEKPYKCSD--CGKAFTRKSGLHIHQQSHTG 37
Score = 50.2 bits (121), Expect = 2e-09
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY+C+ C K+F L H ++HTG
Sbjct: 3 SGSSGTGEKPYKCSD--CGKAFTRKSGLHIHQQSHTG 37
Score = 25.5 bits (57), Expect = 2.0
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
+H + H+G R
Sbjct: 30 IHQQSHTGERHSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.9 bits (128), Expect = 2e-10
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC C KAF + S H TH+GEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 52.9 bits (128), Expect = 2e-10
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC C KAF + S H TH+GEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 4e-09
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY+C C K+F+ L H TH+G
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFRARSSLAIHQATHSG 37
Score = 49.1 bits (118), Expect = 4e-09
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY+C C K+F+ L H TH+G
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFRARSSLAIHQATHSG 37
Score = 24.8 bits (55), Expect = 3.1
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
+H HSG +P
Sbjct: 30 IHQATHSGEKPSGP 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 54.2 bits (130), Expect = 2e-10
Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 29/101 (28%)
Query: 35 THTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTGKYTPGPGIDSRLIVREDFVHLRIHS 93
+ + C ++F T +L HV H G
Sbjct: 19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVG-----------------------GP 53
Query: 94 GIRPYKCPVEYC---EKAFSTQYSRKAHIRTHTGEKPYRCA 131
+ C E C K+F +Y HIR HTGEK +
Sbjct: 54 EQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 45.0 bits (106), Expect = 5e-07
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 82 VREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEKP---YRCAHEFCS- 136
++++ I + C++ FST + H+ H G + C E C
Sbjct: 10 IKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR 67
Query: 137 --KSFKTSGDLQKHVRTHTG 154
KSFK L H+R HTG
Sbjct: 68 EGKSFKAKYKLVNHIRVHTG 87
Score = 43.8 bits (103), Expect = 1e-06
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 5 IHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEKP---YRCAHEFCS---KSFKTSG 57
I + C++ FST + H+ H G + C E C KSFK
Sbjct: 19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 58 DLQKHVRTHTG 68
L H+R HTG
Sbjct: 77 KLVNHIRVHTG 87
Score = 42.3 bits (99), Expect = 5e-06
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 4 RIHSGIRP---YKCPVEYC---EKAFSTQYSRKAHIRTHTGEKPYRCA 45
H G + C E C K+F +Y HIR HTGEK +
Sbjct: 47 MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 26.5 bits (58), Expect = 2.5
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H+R+H+G +
Sbjct: 80 NHIRVHTGEKSGPS 93
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G R Y+C C KAF + + H R H GEKP +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G R Y+C C KAF + + H R H GEKP +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 2e-08
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGE+ Y C+ C K+F L H R H G
Sbjct: 3 SGSSGTGERHYECSE--CGKAFIQKSTLSMHQRIHRG 37
Score = 47.5 bits (114), Expect = 2e-08
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGE+ Y C+ C K+F L H R H G
Sbjct: 3 SGSSGTGERHYECSE--CGKAFIQKSTLSMHQRIHRG 37
Score = 25.2 bits (56), Expect = 2.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
+H RIH G +P
Sbjct: 30 MHQRIHRGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY C C KAF+ + + H + HT +KP +
Sbjct: 3 SGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 52.5 bits (127), Expect = 2e-10
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY C C KAF+ + + H + HT +KP +
Sbjct: 3 SGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY CA C K+F +L KH + HT
Sbjct: 2 SSGSSGTGEKPYICAE--CGKAFTIRSNLIKHQKIHTK 37
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY CA C K+F +L KH + HT
Sbjct: 2 SSGSSGTGEKPYICAE--CGKAFTIRSNLIKHQKIHTK 37
Score = 24.4 bits (54), Expect = 4.7
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H +IH+ +P
Sbjct: 30 KHQKIHTKQKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G + Y C + C K+FS H R H+GEKP
Sbjct: 3 SGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 52.5 bits (127), Expect = 2e-10
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G + Y C + C K+FS H R H+GEKP
Sbjct: 3 SGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 49.4 bits (119), Expect = 3e-09
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEK Y C C KSF + L KH R H+G
Sbjct: 2 SSGSSGTGEKLYNCKE--CGKSFSRAPCLLKHERLHSG 37
Score = 49.4 bits (119), Expect = 3e-09
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEK Y C C KSF + L KH R H+G
Sbjct: 2 SSGSSGTGEKLYNCKE--CGKSFSRAPCLLKHERLHSG 37
Score = 24.4 bits (54), Expect = 4.3
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H R+HSG +P
Sbjct: 30 KHERLHSGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PYKC C K F+ H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PYKC C K F+ H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K F + L +H HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLARHRGIHTG 37
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K F + L +H HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLARHRGIHTG 37
Score = 24.0 bits (53), Expect = 6.0
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H IH+G +P
Sbjct: 30 RHRGIHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC E C K F + H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 52.5 bits (127), Expect = 2e-10
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC E C K F + H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K F DL H HTG
Sbjct: 2 SSGSSGTGEKPYKCEE--CGKGFICRRDLYTHHMVHTG 37
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K F DL H HTG
Sbjct: 2 SSGSSGTGEKPYKCEE--CGKGFICRRDLYTHHMVHTG 37
Score = 24.8 bits (55), Expect = 3.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H +H+G +P
Sbjct: 30 THHMVHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PYKC C K F+ H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PYKC C K F+ H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 4e-08
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K F + L +H HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLVRHRGIHTG 37
Score = 46.3 bits (111), Expect = 4e-08
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K F + L +H HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLVRHRGIHTG 37
Score = 24.4 bits (54), Expect = 5.2
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H IH+G +P
Sbjct: 30 RHRGIHTGEKPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 52.6 bits (127), Expect = 2e-10
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 29/81 (35%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVHLR 90
+ + + KPY C C K F L H++ +
Sbjct: 2 SSGSSGSVGKPYICQS--CGKGFSRPDHLNGHIK-------------------------Q 34
Query: 91 IHSGIRPYKCPVEYCEKAFST 111
+H+ RP+KC + S+
Sbjct: 35 VHTSERPHKC--QVWVSGPSS 53
Score = 51.8 bits (125), Expect = 4e-10
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEKPYRCAHEFCSKSFKT 55
S +PY C + C K FS HI + HT E+P++C + +
Sbjct: 3 SGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPSS 53
Score = 51.8 bits (125), Expect = 4e-10
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEKPYRCAHEFCSKSFKT 141
S +PY C + C K FS HI + HT E+P++C + +
Sbjct: 3 SGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPSS 53
Score = 42.2 bits (100), Expect = 2e-06
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTG 154
+ + + KPY C C K F L H+ + HT
Sbjct: 2 SSGSSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTS 38
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C C K+F + H R HTGE P +
Sbjct: 2 SSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 52.5 bits (127), Expect = 2e-10
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C C K+F + H R HTGE P +
Sbjct: 2 SSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 49.1 bits (118), Expect = 5e-09
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY C+ C KSF L H R HTG
Sbjct: 2 SSGSSGTGEKPYECSD--CGKSFIKKSQLHVHQRIHTG 37
Score = 49.1 bits (118), Expect = 5e-09
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY C+ C KSF L H R HTG
Sbjct: 2 SSGSSGTGEKPYECSD--CGKSFIKKSQLHVHQRIHTG 37
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY C V C KAF H+R HT E +
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 52.5 bits (127), Expect = 2e-10
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY C V C KAF H+R HT E +
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 47.1 bits (113), Expect = 3e-08
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY C C K+F S L +H+R HT
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQ 37
Score = 47.1 bits (113), Expect = 3e-08
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY C C K+F S L +H+R HT
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQ 37
Score = 24.8 bits (55), Expect = 4.0
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 1 VHLRIHSGIRPYKC 14
HLR+H+
Sbjct: 30 QHLRVHTQETLSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PYKC C K F+ H R HTG KP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PYKC C K F+ H R HTG KP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 46.4 bits (111), Expect = 4e-08
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K F + L +H R HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLARHRRVHTG 37
Score = 46.4 bits (111), Expect = 4e-08
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K F + L +H R HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLARHRRVHTG 37
Score = 24.4 bits (54), Expect = 5.3
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H R+H+G +P
Sbjct: 30 RHRRVHTGGKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G+ PYKC CEK+FS + H R HT EKP
Sbjct: 3 SGSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 52.5 bits (127), Expect = 2e-10
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G+ PYKC CEK+FS + H R HT EKP
Sbjct: 3 SGSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + G PY+C+ C KSF L H R HT
Sbjct: 2 SSGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTR 37
Score = 47.5 bits (114), Expect = 1e-08
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + G PY+C+ C KSF L H R HT
Sbjct: 2 SSGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTR 37
Score = 25.6 bits (57), Expect = 1.9
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
VH R+H+ +P
Sbjct: 30 VHQRMHTREKPSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +PYKC C K + + H R HTGEK
Sbjct: 3 SGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 52.5 bits (127), Expect = 2e-10
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +PYKC C K + + H R HTGEK
Sbjct: 3 SGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + +GEKPY+C C K +K DL H R HTG
Sbjct: 2 SSGSSGSGEKPYKCVE--CGKGYKRRLDLDFHQRVHTG 37
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + +GEKPY+C C K +K DL H R HTG
Sbjct: 2 SSGSSGSGEKPYKCVE--CGKGYKRRLDLDFHQRVHTG 37
Score = 24.8 bits (55), Expect = 3.7
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H R+H+G +
Sbjct: 30 FHQRVHTGEKLSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
SG +PYKC C K F+ H R HTGEKP +
Sbjct: 3 SGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 52.1 bits (126), Expect = 3e-10
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
SG +PYKC C K F+ H R HTGEKP +
Sbjct: 3 SGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 45.9 bits (110), Expect = 6e-08
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + +GEKPY+C C K F + L H R HTG
Sbjct: 2 SSGSSGSGEKPYKCNE--CGKVFTQNSHLTNHWRIHTG 37
Score = 45.9 bits (110), Expect = 6e-08
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + +GEKPY+C C K F + L H R HTG
Sbjct: 2 SSGSSGSGEKPYKCNE--CGKVFTQNSHLTNHWRIHTG 37
Score = 25.1 bits (56), Expect = 2.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 NHWRIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
SG +PY C +YC KAF H R HTGEKP +
Sbjct: 3 SGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 52.1 bits (126), Expect = 3e-10
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
SG +PY C +YC KAF H R HTGEKP +
Sbjct: 3 SGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 47.9 bits (115), Expect = 1e-08
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ +GEKPY C + C K+F S +L +H R HTG
Sbjct: 3 SGSSGSGEKPYVCDY--CGKAFGLSAELVRHQRIHTG 37
Score = 47.9 bits (115), Expect = 1e-08
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ +GEKPY C + C K+F S +L +H R HTG
Sbjct: 3 SGSSGSGEKPYVCDY--CGKAFGLSAELVRHQRIHTG 37
Score = 24.8 bits (55), Expect = 4.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 RHQRIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +P+KC E C K F+ +H R HTGEKP
Sbjct: 3 SGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 3e-10
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +P+KC E C K F+ +H R HTGEKP
Sbjct: 3 SGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ +GEKP++C C K F + L H R HTG
Sbjct: 3 SGSSGSGEKPFKCEE--CGKRFTQNSQLHSHQRVHTG 37
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ +GEKP++C C K F + L H R HTG
Sbjct: 3 SGSSGSGEKPFKCEE--CGKRFTQNSQLHSHQRVHTG 37
Score = 24.4 bits (54), Expect = 4.3
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H R+H+G +P
Sbjct: 30 SHQRVHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +P++C C+KAF+T+ + H RTHTGEKP
Sbjct: 3 SGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 52.1 bits (126), Expect = 3e-10
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +P++C C+KAF+T+ + H RTHTGEKP
Sbjct: 3 SGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 2e-09
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKP+ C+ C K+F T +L H RTHTG
Sbjct: 2 SSGSSGTGEKPFECSE--CQKAFNTKSNLIVHQRTHTG 37
Score = 50.2 bits (121), Expect = 2e-09
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKP+ C+ C K+F T +L H RTHTG
Sbjct: 2 SSGSSGTGEKPFECSE--CQKAFNTKSNLIVHQRTHTG 37
Score = 24.8 bits (55), Expect = 4.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
VH R H+G +P
Sbjct: 30 VHQRTHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 3e-10
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC C K+F+ + + H + HTGE+
Sbjct: 3 SGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 52.2 bits (126), Expect = 3e-10
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC C K+F+ + + H + HTGE+
Sbjct: 3 SGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C+ C KSF L+ H + HTG
Sbjct: 2 SSGSSGTGEKPYKCSD--CGKSFTWKSRLRIHQKCHTG 37
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C+ C KSF L+ H + HTG
Sbjct: 2 SSGSSGTGEKPYKCSD--CGKSFTWKSRLRIHQKCHTG 37
Score = 25.6 bits (57), Expect = 2.1
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
+H + H+G R
Sbjct: 30 IHQKCHTGERHSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G RP+KC C K+F H R HTGEKP +
Sbjct: 3 SGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 52.1 bits (126), Expect = 3e-10
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G RP+KC C K+F H R HTGEKP +
Sbjct: 3 SGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 46.3 bits (111), Expect = 5e-08
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGE+P++C C KSF S L +H R HTG
Sbjct: 3 SGSSGTGERPHKCNE--CGKSFIQSAHLIQHQRIHTG 37
Score = 46.3 bits (111), Expect = 5e-08
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGE+P++C C KSF S L +H R HTG
Sbjct: 3 SGSSGTGERPHKCNE--CGKSFIQSAHLIQHQRIHTG 37
Score = 24.8 bits (55), Expect = 3.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 QHQRIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G + ++C C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 52.1 bits (126), Expect = 3e-10
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G + ++C C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 3e-08
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TG K + C C K+F L H + HTG
Sbjct: 2 SSGSSGTGGKHFECTE--CGKAFTRKSTLSMHQKIHTG 37
Score = 46.7 bits (112), Expect = 3e-08
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TG K + C C K+F L H + HTG
Sbjct: 2 SSGSSGTGGKHFECTE--CGKAFTRKSTLSMHQKIHTG 37
Score = 24.8 bits (55), Expect = 4.1
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
+H +IH+G +P
Sbjct: 30 MHQKIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 3e-10
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +PYKC C KAF H R HTG +P
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 52.1 bits (126), Expect = 3e-10
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +PYKC C KAF H R HTG +P
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 46.3 bits (111), Expect = 5e-08
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ +GEKPY+C C K+F L +H R HTG
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTG 37
Score = 46.3 bits (111), Expect = 5e-08
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ +GEKPY+C C K+F L +H R HTG
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTG 37
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 3e-10
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PY C E C KAF + H R HTGEKP
Sbjct: 3 SGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 51.8 bits (125), Expect = 3e-10
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PY C E C KAF + H R HTGEKP
Sbjct: 3 SGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY C C K+F LQ+H R HTG
Sbjct: 2 SSGSSGTGEKPYNCEE--CGKAFIHDSQLQEHQRIHTG 37
Score = 47.9 bits (115), Expect = 1e-08
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY C C K+F LQ+H R HTG
Sbjct: 2 SSGSSGTGEKPYNCEE--CGKAFIHDSQLQEHQRIHTG 37
Score = 24.4 bits (54), Expect = 4.9
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 EHQRIHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 51.8 bits (125), Expect = 4e-10
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G++PY C C K FS + H R+HTG KP
Sbjct: 3 SGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 51.8 bits (125), Expect = 4e-10
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G++PY C C K FS + H R+HTG KP
Sbjct: 3 SGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 49.5 bits (119), Expect = 4e-09
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TG KPY C+ C+K+F L H R+HTG
Sbjct: 2 SSGSSGTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHTG 37
Score = 49.5 bits (119), Expect = 4e-09
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TG KPY C+ C+K+F L H R+HTG
Sbjct: 2 SSGSSGTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHTG 37
Score = 25.2 bits (56), Expect = 2.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
VH R H+G++P
Sbjct: 30 VHQRSHTGVKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 4e-10
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC C KAF + H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 51.7 bits (125), Expect = 4e-10
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC C KAF + H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 9e-09
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K+F+ +L H HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKAFRAHSNLTTHQVIHTG 37
Score = 48.3 bits (116), Expect = 9e-09
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K+F+ +L H HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKAFRAHSNLTTHQVIHTG 37
Score = 25.2 bits (56), Expect = 2.7
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H IH+G +P
Sbjct: 30 THQVIHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 51.8 bits (125), Expect = 4e-10
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PY C + C K+F H R H+GEKP
Sbjct: 3 SGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 51.8 bits (125), Expect = 4e-10
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PY C + C K+F H R H+GEKP
Sbjct: 3 SGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 4e-09
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY C C KSF+ + L KH R H+G
Sbjct: 2 SSGSSGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSG 37
Score = 49.1 bits (118), Expect = 4e-09
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY C C KSF+ + L KH R H+G
Sbjct: 2 SSGSSGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSG 37
Score = 25.2 bits (56), Expect = 2.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H R+HSG +P
Sbjct: 30 KHQRVHSGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 4e-10
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC C K F+ H R HTG KP
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 51.8 bits (125), Expect = 4e-10
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC C K F+ H R HTG KP
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K F + L H R HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLANHQRIHTG 37
Score = 46.7 bits (112), Expect = 3e-08
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K F + L H R HTG
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLANHQRIHTG 37
Score = 24.8 bits (55), Expect = 4.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G++P
Sbjct: 30 NHQRIHTGVKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 51.7 bits (125), Expect = 4e-10
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G++PY C C KAF ++ H RTHTGE
Sbjct: 3 SGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 51.7 bits (125), Expect = 4e-10
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G++PY C C KAF ++ H RTHTGE
Sbjct: 3 SGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TG KPY C C K+F++ L H RTHTG
Sbjct: 2 SSGSSGTGMKPYVCNE--CGKAFRSKSYLIIHTRTHTG 37
Score = 49.8 bits (120), Expect = 2e-09
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TG KPY C C K+F++ L H RTHTG
Sbjct: 2 SSGSSGTGMKPYVCNE--CGKAFRSKSYLIIHTRTHTG 37
Score = 24.4 bits (54), Expect = 5.1
Identities = 4/14 (28%), Positives = 6/14 (42%)
Query: 1 VHLRIHSGIRPYKC 14
+H R H+G
Sbjct: 30 IHTRTHTGESGPSS 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 51.4 bits (124), Expect = 5e-10
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +P+KC E C K F T +H R+H+GEKP
Sbjct: 3 SGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 51.4 bits (124), Expect = 5e-10
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +P+KC E C K F T +H R+H+GEKP
Sbjct: 3 SGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 49.9 bits (120), Expect = 2e-09
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + +GEKP++C C K F T+ H R+H+G
Sbjct: 2 SSGSSGSGEKPFKCEE--CGKGFYTNSQCYSHQRSHSG 37
Score = 49.9 bits (120), Expect = 2e-09
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + +GEKP++C C K F T+ H R+H+G
Sbjct: 2 SSGSSGSGEKPFKCEE--CGKGFYTNSQCYSHQRSHSG 37
Score = 24.1 bits (53), Expect = 5.6
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H R HSG +P
Sbjct: 30 SHQRSHSGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 51.4 bits (124), Expect = 6e-10
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ GEKPYRC C K+F G L H+R HTG
Sbjct: 1 GSSGSSGGEKPYRCDQ--CGKAFSQKGSLIVHIRVHTG 36
Score = 51.4 bits (124), Expect = 6e-10
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ GEKPYRC C K+F G L H+R HTG
Sbjct: 1 GSSGSSGGEKPYRCDQ--CGKAFSQKGSLIVHIRVHTG 36
Score = 51.4 bits (124), Expect = 6e-10
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
G +PY+C + C KAFS + S HIR HTG P
Sbjct: 2 SSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 51.4 bits (124), Expect = 6e-10
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
G +PY+C + C KAFS + S HIR HTG P
Sbjct: 2 SSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 51.4 bits (124), Expect = 6e-10
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +PY+C + C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 51.4 bits (124), Expect = 6e-10
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +PY+C + C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 4e-08
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY C C K+F + L +H R HTG
Sbjct: 3 SGSSGTGEKPYECKE--CGKAFSQTTHLIQHQRVHTG 37
Score = 46.7 bits (112), Expect = 4e-08
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY C C K+F + L +H R HTG
Sbjct: 3 SGSSGTGEKPYECKE--CGKAFSQTTHLIQHQRVHTG 37
Score = 24.4 bits (54), Expect = 4.7
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H R+H+G +P
Sbjct: 30 QHQRVHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 51.4 bits (124), Expect = 6e-10
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
G + +KC C+ FS S + H H GEKP
Sbjct: 3 SGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 51.4 bits (124), Expect = 6e-10
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
G + +KC C+ FS S + H H GEKP
Sbjct: 3 SGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-09
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + GEK ++C C F + L+ H H G
Sbjct: 2 SSGSSGMGEKTWKCRE--CDMCFSQASSLRLHQNVHVG 37
Score = 48.7 bits (117), Expect = 6e-09
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + GEK ++C C F + L+ H H G
Sbjct: 2 SSGSSGMGEKTWKCRE--CDMCFSQASSLRLHQNVHVG 37
Score = 24.8 bits (55), Expect = 3.0
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
+H +H G +P
Sbjct: 30 LHQNVHVGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 6e-10
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 46
+G +P+KC C K+++ + H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 51.4 bits (124), Expect = 6e-10
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 132
+G +P+KC C K+++ + H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 4e-08
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKP++C C KS+ L +H R HTG
Sbjct: 3 SGSSGTGEKPFKCGE--CGKSYNQRVHLTQHQRVHTG 37
Score = 46.4 bits (111), Expect = 4e-08
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKP++C C KS+ L +H R HTG
Sbjct: 3 SGSSGTGEKPFKCGE--CGKSYNQRVHLTQHQRVHTG 37
Score = 24.8 bits (55), Expect = 4.0
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H R+H+G +P
Sbjct: 30 QHQRVHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 7e-10
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +P+KC + C KAF +H+R HTGEKP
Sbjct: 3 SGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 51.3 bits (124), Expect = 7e-10
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +P+KC + C KAF +H+R HTGEKP
Sbjct: 3 SGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + +GEKP++C C K+F+ + L H+R HTG
Sbjct: 2 SSGSSGSGEKPFKCKE--CGKAFRQNIHLASHLRIHTG 37
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + +GEKP++C C K+F+ + L H+R HTG
Sbjct: 2 SSGSSGSGEKPFKCKE--CGKAFRQNIHLASHLRIHTG 37
Score = 25.2 bits (56), Expect = 3.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
HLRIH+G +P
Sbjct: 30 SHLRIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 7e-10
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +P++C E C K F+ +H R HTGEKP
Sbjct: 3 SGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 7e-10
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +P++C E C K F+ +H R HTGEKP
Sbjct: 3 SGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ +GEKP++C C K F + L H R HTG
Sbjct: 3 SGSSGSGEKPFQCEE--CGKRFTQNSHLHSHQRVHTG 37
Score = 47.5 bits (114), Expect = 2e-08
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ +GEKP++C C K F + L H R HTG
Sbjct: 3 SGSSGSGEKPFQCEE--CGKRFTQNSHLHSHQRVHTG 37
Score = 24.4 bits (54), Expect = 5.2
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H R+H+G +P
Sbjct: 30 SHQRVHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 51.0 bits (123), Expect = 8e-10
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +P++C +C K+F + + H R HTGEK
Sbjct: 3 SGSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 51.0 bits (123), Expect = 8e-10
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +P++C +C K+F + + H R HTGEK
Sbjct: 3 SGSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 50.2 bits (121), Expect = 2e-09
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TG+KP+ C H C KSF+ G+L H R HTG
Sbjct: 2 SSGSSGTGQKPFECTH--CGKSFRAKGNLVTHQRIHTG 37
Score = 50.2 bits (121), Expect = 2e-09
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TG+KP+ C H C KSF+ G+L H R HTG
Sbjct: 2 SSGSSGTGQKPFECTH--CGKSFRAKGNLVTHQRIHTG 37
Score = 25.2 bits (56), Expect = 2.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +
Sbjct: 30 THQRIHTGEKSGPS 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 8e-10
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G P+ C C K F+ + + H + HTGE+P
Sbjct: 3 SGSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 51.0 bits (123), Expect = 8e-10
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G P+ C C K F+ + + H + HTGE+P
Sbjct: 3 SGSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 49.4 bits (119), Expect = 3e-09
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGE P+ C+ C K F +L H + HTG
Sbjct: 2 SSGSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHTG 37
Score = 49.4 bits (119), Expect = 3e-09
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGE P+ C+ C K F +L H + HTG
Sbjct: 2 SSGSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHTG 37
Score = 25.1 bits (56), Expect = 3.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 1 VHLRIHSGIRPYKC 14
+H +IH+G RP
Sbjct: 30 IHQKIHTGERPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 8e-10
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC C K F H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 8e-10
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC C K F H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY+C C K F+ + L +H R HTG
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFRHNSYLSRHQRIHTG 37
Score = 47.1 bits (113), Expect = 3e-08
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY+C C K F+ + L +H R HTG
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFRHNSYLSRHQRIHTG 37
Score = 24.8 bits (55), Expect = 3.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 RHQRIHTGEKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 9e-10
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 45
SG RPY C C K F H++ H EK +
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 51.0 bits (123), Expect = 9e-10
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 131
SG RPY C C K F H++ H EK +
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 46.4 bits (111), Expect = 5e-08
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ +GE+PY C C K+F L +H++ H
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFR 37
Score = 46.4 bits (111), Expect = 5e-08
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ +GE+PY C C K+F L +H++ H
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFR 37
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 9e-10
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PY+C + C KAF+ + H +THTGEKP
Sbjct: 3 SGSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 9e-10
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PY+C + C KAF+ + H +THTGEKP
Sbjct: 3 SGSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 49.5 bits (119), Expect = 3e-09
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY C CSK+F L +H +THTG
Sbjct: 2 SSGSSGTGEKPYECKV--CSKAFTQKAHLAQHQKTHTG 37
Score = 49.5 bits (119), Expect = 3e-09
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY C CSK+F L +H +THTG
Sbjct: 2 SSGSSGTGEKPYECKV--CSKAFTQKAHLAQHQKTHTG 37
Score = 24.4 bits (54), Expect = 5.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H + H+G +P
Sbjct: 30 QHQKTHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-09
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
G +PY+C C K+FS Y H THT EKP
Sbjct: 3 SGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 50.6 bits (122), Expect = 1e-09
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
G +PY+C C K+FS Y H THT EKP
Sbjct: 3 SGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 46.8 bits (112), Expect = 3e-08
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + GEKPY+C+ C KSF S L +H THT
Sbjct: 2 SSGSSGEGEKPYQCSE--CGKSFSGSYRLTQHWITHTR 37
Score = 46.8 bits (112), Expect = 3e-08
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + GEKPY+C+ C KSF S L +H THT
Sbjct: 2 SSGSSGEGEKPYQCSE--CGKSFSGSYRLTQHWITHTR 37
Score = 25.2 bits (56), Expect = 3.0
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 1 VHLRIHSGIRPYKC 14
H H+ +P
Sbjct: 30 QHWITHTREKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 1e-09
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC V C KAF H H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 50.6 bits (122), Expect = 1e-09
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC V C KAF H H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.0 bits (110), Expect = 7e-08
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ TGEKPY+C C K+F+ S L +H H+G
Sbjct: 3 SGSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSG 37
Score = 46.0 bits (110), Expect = 7e-08
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ TGEKPY+C C K+F+ S L +H H+G
Sbjct: 3 SGSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSG 37
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 1e-09
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +PY+C C KAF + H RTH G
Sbjct: 3 SGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 50.2 bits (121), Expect = 1e-09
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +PY+C C KAF + H RTH G
Sbjct: 3 SGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 49.1 bits (118), Expect = 4e-09
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + +GEKPY C C K+F L H RTH G
Sbjct: 2 SSGSSGSGEKPYECNE--CGKAFIWKSLLIVHERTHAG 37
Score = 49.1 bits (118), Expect = 4e-09
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + +GEKPY C C K+F L H RTH G
Sbjct: 2 SSGSSGSGEKPYECNE--CGKAFIWKSLLIVHERTHAG 37
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-09
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PYKC C K F H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 2e-09
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PYKC C K F H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.5 bits (109), Expect = 8e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY+C C K F+ + L +H HTG
Sbjct: 2 SSGSSGTGEKPYKCHE--CGKVFRRNSHLARHQLIHTG 37
Score = 45.5 bits (109), Expect = 8e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY+C C K F+ + L +H HTG
Sbjct: 2 SSGSSGTGEKPYKCHE--CGKVFRRNSHLARHQLIHTG 37
Score = 24.4 bits (54), Expect = 4.9
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H IH+G +P
Sbjct: 30 RHQLIHTGEKPSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 50.2 bits (121), Expect = 2e-09
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +P+ C CEKAFS++ H +TH EKP
Sbjct: 3 SGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 50.2 bits (121), Expect = 2e-09
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +P+ C CEKAFS++ H +TH EKP
Sbjct: 3 SGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 44.1 bits (105), Expect = 4e-07
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+GEKP+ C+ C K+F + L H +TH
Sbjct: 3 SGSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAE 35
Score = 44.1 bits (105), Expect = 4e-07
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+GEKP+ C+ C K+F + L H +TH
Sbjct: 3 SGSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAE 35
Score = 26.0 bits (58), Expect = 1.5
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
VH + H+ +P
Sbjct: 28 VHQQTHAEEKPSGP 41
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 2e-09
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +PY C C K+F + H R HTGEKP
Sbjct: 3 SGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 2e-09
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +PY C C K+F + H R HTGEKP
Sbjct: 3 SGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 6e-09
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKPY C C KSF L +H R HTG
Sbjct: 2 SSGSSGTGEKPYICNE--CGKSFIQKSHLNRHRRIHTG 37
Score = 48.7 bits (117), Expect = 6e-09
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKPY C C KSF L +H R HTG
Sbjct: 2 SSGSSGTGEKPYICNE--CGKSFIQKSHLNRHRRIHTG 37
Score = 24.4 bits (54), Expect = 5.5
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 1 VHLRIHSGIRPYKC 14
H RIH+G +P
Sbjct: 30 RHRRIHTGEKPSGP 43
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 50.4 bits (120), Expect = 3e-09
Identities = 21/73 (28%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
+IH G R KC C F T + K C E C K L K
Sbjct: 9 RQKIHLGDRSQKC--SKCGIIFI-------RRSTLSRRKTPMC--EKCRKDSCQEAALNK 57
Query: 62 HVRTHTGKYTPGP 74
+GK T GP
Sbjct: 58 DEGNESGKKTSGP 70
Score = 36.9 bits (85), Expect = 2e-04
Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 37/101 (36%)
Query: 28 SRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFV 87
S + H G++ +C+ C F L +
Sbjct: 5 SSGKRQKIHLGDRSQKCSK--CGIIFIRRSTLSRR------------------------- 37
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
+ C E C K + + +G+K
Sbjct: 38 --------KTPMC--EKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 34.3 bits (78), Expect = 0.002
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 19/64 (29%)
Query: 114 SRKAHIRTHTGEKPYRCAH-------------------EFCSKSFKTSGDLQKHVRTHTG 154
S + H G++ +C+ E C K L K +G
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESG 64
Query: 155 KYTA 158
K T+
Sbjct: 65 KKTS 68
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 4e-09
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG RP+KC C K F + H+R H+ EK
Sbjct: 3 SGSSGSGERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 49.1 bits (118), Expect = 4e-09
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG RP+KC C K F + H+R H+ EK
Sbjct: 3 SGSSGSGERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 45.6 bits (109), Expect = 9e-08
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ +GE+P++C C K F L H+R H+
Sbjct: 3 SGSSGSGERPFKCNE--CGKGFGRRSHLAGHLRLHSR 37
Score = 45.6 bits (109), Expect = 9e-08
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ +GE+P++C C K F L H+R H+
Sbjct: 3 SGSSGSGERPFKCNE--CGKGFGRRSHLAGHLRLHSR 37
Score = 25.2 bits (56), Expect = 2.7
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
HLR+HS +
Sbjct: 30 GHLRLHSREKSSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 48.7 bits (117), Expect = 5e-09
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+ T K Y C C K+F L +H + HT K P G
Sbjct: 3 SGSSGTDSKSYNCNE--CGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 45.6 bits (109), Expect = 7e-08
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+ T K Y C C K+F L +H + HT K
Sbjct: 3 SGSSGTDSKSYNCNE--CGKAFTRIFHLTRHQKIHTRK 38
Score = 41.0 bits (97), Expect = 4e-06
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 45
+ + Y C C KAF+ + H + HT +
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 41.0 bits (97), Expect = 4e-06
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 131
+ + Y C C KAF+ + H + HT +
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 7e-09
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
G R ++C C K F + H R HTGEKP
Sbjct: 3 SGSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 7e-09
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
G R ++C C K F + H R HTGEKP
Sbjct: 3 SGSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ GE+ +RC+ C K F + + +H R HTG
Sbjct: 3 SGSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHTG 37
Score = 47.1 bits (113), Expect = 2e-08
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ GE+ +RC+ C K F + + +H R HTG
Sbjct: 3 SGSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHTG 37
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 48.3 bits (116), Expect = 7e-09
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG PY+C C KAF+ + +H RTH GE
Sbjct: 3 SGSSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 48.3 bits (116), Expect = 7e-09
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG PY+C C KAF+ + +H RTH GE
Sbjct: 3 SGSSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 44.8 bits (107), Expect = 1e-07
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+GE PY C+ C K+F L H RTH G
Sbjct: 3 SGSSGENPYECSE--CGKAFNRKDQLISHQRTHAG 35
Score = 44.8 bits (107), Expect = 1e-07
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+GE PY C+ C K+F L H RTH G
Sbjct: 3 SGSSGENPYECSE--CGKAFNRKDQLISHQRTHAG 35
Score = 25.2 bits (56), Expect = 2.3
Identities = 4/14 (28%), Positives = 5/14 (35%)
Query: 1 VHLRIHSGIRPYKC 14
H R H+G
Sbjct: 28 SHQRTHAGESGPSS 41
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +PY+C + C K F H R HTGE+
Sbjct: 3 SGSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +PY+C + C K F H R HTGE+
Sbjct: 3 SGSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + +G+KPY C C K+F G L +H R HTG
Sbjct: 2 SSGSSGSGKKPYECKE--CRKTFIQIGHLNQHKRVHTG 37
Score = 47.1 bits (113), Expect = 2e-08
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + +G+KPY C C K+F G L +H R HTG
Sbjct: 2 SSGSSGSGKKPYECKE--CRKTFIQIGHLNQHKRVHTG 37
Score = 24.4 bits (54), Expect = 4.5
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 1 VHLRIHSGIRPYKC 14
H R+H+G R
Sbjct: 30 QHKRVHTGERSSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGEKP +C C K+F L H RTH
Sbjct: 2 SSGSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVD 37
Score = 47.9 bits (115), Expect = 1e-08
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGEKP +C C K+F L H RTH
Sbjct: 2 SSGSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVD 37
Score = 47.9 bits (115), Expect = 1e-08
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G +P KC C KAF + H RTH +K
Sbjct: 3 SGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 47.9 bits (115), Expect = 1e-08
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G +P KC C KAF + H RTH +K
Sbjct: 3 SGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 24.4 bits (54), Expect = 4.5
Identities = 3/14 (21%), Positives = 5/14 (35%)
Query: 1 VHLRIHSGIRPYKC 14
+H R H +
Sbjct: 30 MHQRTHVDDKHSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 48.2 bits (114), Expect = 1e-08
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
Y C E C K HIRTHT +PY C + C+ SFKT G+L KH+++
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAH 54
Score = 48.2 bits (114), Expect = 1e-08
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 98 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
Y C E C K HIRTHT +PY C + C+ SFKT G+L KH+++
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAH 54
Score = 38.2 bits (88), Expect = 6e-05
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
H+R H+ +RPY C YC +F T+ + H+++ K
Sbjct: 20 HIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 38.2 bits (88), Expect = 6e-05
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
H+R H+ +RPY C YC +F T+ + H+++ K
Sbjct: 20 HIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 25.1 bits (54), Expect = 3.9
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 128 YRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
Y C E C K L+KH+RTHT
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDV 27
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 47.1 bits (113), Expect = 3e-08
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
+G PY+C C K FS + +H +TH+G+
Sbjct: 3 SGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.1 bits (113), Expect = 3e-08
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
+G PY+C C K FS + +H +TH+G+
Sbjct: 3 SGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 46.3 bits (111), Expect = 5e-08
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + TGE PY C C K F L H +TH+G
Sbjct: 2 SSGSSGTGENPYECCE--CGKVFSRKDQLVSHQKTHSG 37
Score = 46.3 bits (111), Expect = 5e-08
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + TGE PY C C K F L H +TH+G
Sbjct: 2 SSGSSGTGENPYECCE--CGKVFSRKDQLVSHQKTHSG 37
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 46.9 bits (112), Expect = 3e-08
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+GEKPY CA C ++F + L +H + HT K P G
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 43.1 bits (102), Expect = 7e-07
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+GEKPY CA C ++F + L +H + HT K
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVK 36
Score = 37.7 bits (88), Expect = 7e-05
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG +PY C C++ FS H + HT +
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 37.7 bits (88), Expect = 7e-05
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG +PY C C++ FS H + HT +
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSGPSS 41
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 46.8 bits (112), Expect = 3e-08
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRC 44
+G +PY+C C KAF S H R HTGEKP
Sbjct: 3 SGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 46.8 bits (112), Expect = 3e-08
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRC 130
+G +PY+C C KAF S H R HTGEKP
Sbjct: 3 SGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 44.5 bits (106), Expect = 2e-07
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR-THTG 68
+ + TG+KPY C C K+F + L +H R HTG
Sbjct: 2 SSGSSGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTG 38
Score = 44.5 bits (106), Expect = 2e-07
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR-THTG 154
+ + TG+KPY C C K+F + L +H R HTG
Sbjct: 2 SSGSSGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTG 38
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 4e-08
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + K ++C C + F L +H R HTG
Sbjct: 3 SGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTG 37
Score = 46.4 bits (111), Expect = 4e-08
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + K ++C C + F L +H R HTG
Sbjct: 3 SGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTG 37
Score = 44.8 bits (107), Expect = 1e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
S + ++C C + F+ + H R HTGEKP
Sbjct: 3 SGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 1e-07
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
S + ++C C + F+ + H R HTGEKP
Sbjct: 3 SGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.4 bits (111), Expect = 5e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+ +GEK + C C K+F L+ H R H G+ GP
Sbjct: 3 SGSSGSGEKSHTCDE--CGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 45.7 bits (109), Expect = 8e-08
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 44
SG + + C + C K F + + H R H GEK
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 45.7 bits (109), Expect = 8e-08
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 130
SG + + C + C K F + + H R H GEK
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 45.7 bits (109), Expect = 9e-08
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ +GEK + C C K+F L+ H R H G
Sbjct: 3 SGSSGSGEKSHTCDE--CGKNFCYISALRIHQRVHMG 37
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 45.7 bits (109), Expect = 7e-08
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ GE PY C C KSF G L H R+ +
Sbjct: 1 GSSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQ 36
Score = 45.7 bits (109), Expect = 7e-08
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ GE PY C C KSF G L H R+ +
Sbjct: 1 GSSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQ 36
Score = 42.7 bits (101), Expect = 1e-06
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
G PY C C K+F+ + S H R+ + P
Sbjct: 2 SSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 42.7 bits (101), Expect = 1e-06
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
G PY C C K+F+ + S H R+ + P
Sbjct: 2 SSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQSGPS 40
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 44.1 bits (104), Expect = 3e-07
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 31 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPG 75
+ + GE P++C+ C + F L +H RTH K P G
Sbjct: 2 SSGSSGAGENPFKCSK--CDRVFTQRNYLVQHERTHARKSGPSSG 44
Score = 39.5 bits (92), Expect = 2e-05
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 117 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+ + GE P++C+ C + F L +H RTH K
Sbjct: 2 SSGSSGAGENPFKCSK--CDRVFTQRNYLVQHERTHARK 38
Score = 33.7 bits (77), Expect = 0.002
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 41
+G P+KC C++ F+ + H RTH +
Sbjct: 3 SGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKSG 40
Score = 33.7 bits (77), Expect = 0.002
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 127
+G P+KC C++ F+ + H RTH +
Sbjct: 3 SGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKSG 40
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 43.4 bits (103), Expect = 4e-07
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+P+ C +C K F S +LQ+H RTHTG
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 43.4 bits (103), Expect = 4e-07
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+P+ C +C K F S +LQ+H RTHTG
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 39.9 bits (94), Expect = 1e-05
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
RP+ C YC K F+ + H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 39.9 bits (94), Expect = 1e-05
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
RP+ C YC K F+ + H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 43.5 bits (103), Expect = 5e-07
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 32 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 66
R TG KP++C C +SF S L H + H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 43.5 bits (103), Expect = 5e-07
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 118 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
R TG KP++C C +SF S L H + H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 36.9 bits (86), Expect = 1e-04
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 36
R +GI+P++CP C+++FS H + H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 36.9 bits (86), Expect = 1e-04
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 122
R +GI+P++CP C+++FS H + H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 43.3 bits (103), Expect = 6e-07
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+G++ Y C C KSF+ G L H R HTG
Sbjct: 3 SGSSGQRVYECQE--CGKSFRQKGSLTLHERIHTG 35
Score = 43.3 bits (103), Expect = 6e-07
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+G++ Y C C KSF+ G L H R HTG
Sbjct: 3 SGSSGQRVYECQE--CGKSFRQKGSLTLHERIHTG 35
Score = 41.4 bits (98), Expect = 3e-06
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 42
SG R Y+C + C K+F + S H R HTG P
Sbjct: 3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 41.4 bits (98), Expect = 3e-06
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 128
SG R Y+C + C K+F + S H R HTG P
Sbjct: 3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPS 39
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 42.2 bits (99), Expect = 2e-06
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 4 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 45
+ C E C K F Y H +H+GEKPY
Sbjct: 5 SSGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 42.2 bits (99), Expect = 2e-06
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 131
+ C E C K F Y H +H+GEKPY
Sbjct: 5 SSGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 33.8 bits (77), Expect = 0.002
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 34 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ K C E C K F+ L +H +H+G
Sbjct: 5 SSGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSG 37
Score = 33.8 bits (77), Expect = 0.002
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 120 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ K C E C K F+ L +H +H+G
Sbjct: 5 SSGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSG 37
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 42.6 bits (99), Expect = 6e-06
Identities = 29/123 (23%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFVH-------L 89
+G K Y H+ + H T K I LI + L
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIR-AIVKTLIHNPQLLDESSYLYRL 66
Query: 90 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 149
I + CP C FS+ S K HIR E C C K F ++ HV
Sbjct: 67 LASKAISQFVCP--LCLMPFSSSVSLKQHIRYT--EHTKVC--PVCKKEFTSTDSALDHV 120
Query: 150 RTH 152
Sbjct: 121 CKK 123
Score = 40.3 bits (93), Expect = 4e-05
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
L I + CP C FS+ S K HIR E C C K F ++
Sbjct: 65 RLLASKAISQFVCP--LCLMPFSSSVSLKQHIRYT--EHTKVC--PVCKKEFTSTDSALD 118
Query: 62 HVRTH 66
HV
Sbjct: 119 HVCKK 123
Score = 31.1 bits (69), Expect = 0.084
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 4/73 (5%)
Query: 87 VHLRIHSGIRPYKCPVEYCEKA--FSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGD 144
H R + V+ + S + + C C F +S
Sbjct: 32 YHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPL--CLMPFSSSVS 89
Query: 145 LQKHVRTHTGKYT 157
L++H+R
Sbjct: 90 LKQHIRYTEHTKV 102
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 36.9 bits (86), Expect = 1e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+ + C ++ C K + +AH+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 36.9 bits (86), Expect = 1e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+ + C ++ C K + +AH+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 36.2 bits (84), Expect = 2e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+K + C + C K + + L+ H+R HTG
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
Score = 36.2 bits (84), Expect = 2e-04
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+K + C + C K + + L+ H+R HTG
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTG 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 4e-04
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 47/145 (32%)
Query: 58 DLQKHVRTHTGKYTPGPGIDSRLIV-----REDFV---------HLRIHSGIRPYKCP-- 101
+Q +V T + P ++ + ++ V L + +R K P
Sbjct: 348 QVQDYVN-KTNSHLPA---GKQVEISLVNGAKNLVVSGPPQSLYGLNLT--LRKAKAPSG 401
Query: 102 VEYCEKAFSTQYSRKAHIRT---------HTGEKPY-RCAHEFCSK-------SFKTSGD 144
++ FS RK H+ A + +K SF D
Sbjct: 402 LDQSRIPFS---ERKLKFSNRFLPVASPFHS---HLLVPASDLINKDLVKNNVSFNAK-D 454
Query: 145 LQKHV-RTHTGKYTAEVPGSILDCL 168
+Q V T G + GSI + +
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERI 479
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 38.7 bits (89), Expect = 6e-04
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 15 PVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 66
E S +R T + Y+C CS + DL HV +H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASH 203
Score = 38.7 bits (89), Expect = 6e-04
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 101 PVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 152
E S +R T + Y+C CS + DL HV +H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASH 203
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 34.5 bits (79), Expect = 0.001
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+ ++C C K F +Y+ ++HI+TH ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 34.5 bits (79), Expect = 0.001
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+ ++C C K F +Y+ ++HI+TH ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 31.4 bits (71), Expect = 0.015
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 32 HIRTHTGEKP---YRCAHEFCSKSFKTSGDLQKHVRTHTG 68
I + E P + C C+K+FK +++ H++TH
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 31.4 bits (71), Expect = 0.015
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 118 HIRTHTGEKP---YRCAHEFCSKSFKTSGDLQKHVRTHTG 154
I + E P + C C+K+FK +++ H++TH
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.4 bits (77), Expect = 0.002
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
R + C C +AF+ Q K H R+HT EK
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.4 bits (77), Expect = 0.002
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
R + C C +AF+ Q K H R+HT EK
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.2 bits (66), Expect = 0.068
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTG 68
+ + C E C+++F L++H R+HT
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTN 27
Score = 29.2 bits (66), Expect = 0.068
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTG 154
+ + C E C+++F L++H R+HT
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTN 27
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 32.4 bits (73), Expect = 0.006
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
KPY C H C + F G LQ+HVR HTG+
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGE 29
Score = 32.4 bits (73), Expect = 0.006
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KPY C H C + F G LQ+HVR HTG+
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGE 29
Score = 30.1 bits (67), Expect = 0.039
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
++PY C +C++ F+ + + H+R HTGEK
Sbjct: 1 MKPYVC--IHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.1 bits (67), Expect = 0.039
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
++PY C +C++ F+ + + H+R HTGEK
Sbjct: 1 MKPYVC--IHCQRQFADPGALQRHVRIHTGEK 30
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 31.9 bits (72), Expect = 0.009
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
++PY C H C K+F + DL +H ++H K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 31.9 bits (72), Expect = 0.009
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
++PY C H C K+F + DL +H ++H K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
Score = 27.7 bits (61), Expect = 0.27
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHT 37
RPY C C+KAF + H ++H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 27.7 bits (61), Expect = 0.27
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHT 123
RPY C C+KAF + H ++H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.8 bits (66), Expect = 0.055
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 17 EYCEKAFSTQYSRKAHIRTHTGEK 40
EYC K F ++S +AH+R HT EK
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 29.8 bits (66), Expect = 0.055
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 103 EYCEKAFSTQYSRKAHIRTHTGEK 126
EYC K F ++S +AH+R HT EK
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.1 bits (59), Expect = 0.42
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 47 EFCSKSFKTSGDLQKHVRTHTGK 69
E+C+K FK LQ H+R HT +
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNE 35
Score = 27.1 bits (59), Expect = 0.42
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 133 EFCSKSFKTSGDLQKHVRTHTGK 155
E+C+K FK LQ H+R HT +
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNE 35
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.6 bits (63), Expect = 0.15
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 36 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 67
+G++P+ C C +F T + +H++ HT
Sbjct: 2 SSGKRPFVC--RICLSAFTTKANCARHLKVHT 31
Score = 28.6 bits (63), Expect = 0.15
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 122 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
+G++P+ C C +F T + +H++ HT
Sbjct: 2 SSGKRPFVC--RICLSAFTTKANCARHLKVHT 31
Score = 27.8 bits (61), Expect = 0.27
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 37
SG RP+ C + C AF+T+ + H++ HT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHT 31
Score = 27.8 bits (61), Expect = 0.27
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 123
SG RP+ C + C AF+T+ + H++ HT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHT 31
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 29.9 bits (66), Expect = 0.17
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 35/124 (28%)
Query: 28 SRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGPGIDSRLIVREDFV 87
S + ++ Y+C C+ + + H R
Sbjct: 3 SGSSGASPVENKEVYQC--RLCNAKLSSLLEQGSHERLCR-------------------- 40
Query: 88 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 147
CP YC F + ++ H + K C C ++FK+S + +
Sbjct: 41 --------NAAVCP--YCSLRFFSPELKQEH-ESKCEYKKLTCL--ECMRTFKSSFSIWR 87
Query: 148 HVRT 151
H
Sbjct: 88 HQVE 91
Score = 29.9 bits (66), Expect = 0.19
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 61
H R+ CP YC F + ++ H + K C C ++FK+S + +
Sbjct: 35 HERLCR--NAAVCP--YCSLRFFSPELKQEH-ESKCEYKKLTCL--ECMRTFKSSFSIWR 87
Query: 62 HVRT 65
H
Sbjct: 88 HQVE 91
Score = 27.2 bits (59), Expect = 1.4
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 8 GIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 67
Y+C C S+ + +H R C +CS F + Q+H
Sbjct: 13 NKEVYQC--RLCNAKLSSLLEQGSHERLC--RNAAVC--PYCSLRFFSPELKQEHESKCE 66
Query: 68 GK 69
K
Sbjct: 67 YK 68
Score = 27.2 bits (59), Expect = 1.4
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 94 GIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
Y+C C S+ + +H R C +CS F + Q+H
Sbjct: 13 NKEVYQC--RLCNAKLSSLLEQGSHERLC--RNAAVC--PYCSLRFFSPELKQEHESKCE 66
Query: 154 GK 155
K
Sbjct: 67 YK 68
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.0 bits (61), Expect = 0.26
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 122 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTAEVPGS 163
+GEKPY C C FK + HVR+H G P S
Sbjct: 5 SSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
Score = 27.2 bits (59), Expect = 0.52
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 36 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+GEKPY C C FK + HVR+H G
Sbjct: 5 SSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKSG 41
Score = 25.6 bits (55), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 6 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 38
SG +PY CPV C F + H+R+H G
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
Score = 25.6 bits (55), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 92 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 124
SG +PY CPV C F + H+R+H G
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 27.0 bits (59), Expect = 0.39
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 14 CPVEYCEKAFSTQYSRKAHIRTHTGEK 40
C C KAF+ S AH+R HTGEK
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.0 bits (59), Expect = 0.39
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 100 CPVEYCEKAFSTQYSRKAHIRTHTGEK 126
C C KAF+ S AH+R HTGEK
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.0 bits (51), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 40 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
KP +C C K+F + L HVR HTG+
Sbjct: 1 KPCQCV--MCGKAFTQASSLIAHVRQHTGE 28
Score = 24.0 bits (51), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 126 KPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
KP +C C K+F + L HVR HTG+
Sbjct: 1 KPCQCV--MCGKAFTQASSLIAHVRQHTGE 28
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 0.57
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 35 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPGP 74
+ EK ++C C K+F S L +H R HT GP
Sbjct: 6 SGQKEKCFKCNK--CEKTFSCSKYLTQHERIHTRGVKSGP 43
Score = 25.2 bits (54), Expect = 2.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 121 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
+ EK ++C C K+F S L +H R HT
Sbjct: 6 SGQKEKCFKCNK--CEKTFSCSKYLTQHERIHT 36
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 0.60
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 40
+PYKCP C A + + + H+R HTGEK
Sbjct: 8 KPYKCP--QCSYASAIKANLNVHLRKHTGEK 36
Score = 26.7 bits (58), Expect = 0.60
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+PYKCP C A + + + H+R HTGEK
Sbjct: 8 KPYKCP--QCSYASAIKANLNVHLRKHTGEK 36
Score = 24.8 bits (53), Expect = 3.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 37 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
+ KPY+C CS + +L H+R HTG+
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGE 35
Score = 24.8 bits (53), Expect = 3.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 123 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
+ KPY+C CS + +L H+R HTG+
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGE 35
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 38
Score = 26.6 bits (58), Expect = 0.82
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 13 KCPVEYCEKAFSTQYSRKAHIRTHT 37
KCP + C+ + +Y +AH++ HT
Sbjct: 11 KCPTDGCDYSTPDKYKLQAHLKVHT 35
Score = 26.6 bits (58), Expect = 0.82
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 99 KCPVEYCEKAFSTQYSRKAHIRTHT 123
KCP + C+ + +Y +AH++ HT
Sbjct: 11 KCPTDGCDYSTPDKYKLQAHLKVHT 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.9 bits (56), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 9 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 38
+RPY C V C K FS ++ + H R HTG
Sbjct: 1 MRPYSCSV--CGKRFSLKHQMETHYRVHTG 28
Score = 25.9 bits (56), Expect = 1.2
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 95 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 124
+RPY C V C K FS ++ + H R HTG
Sbjct: 1 MRPYSCSV--CGKRFSLKHQMETHYRVHTG 28
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type
zinc finger, KIAA0530, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 73
Score = 26.5 bits (57), Expect = 1.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 36 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
++ +PYRC H+ C +F +L H +
Sbjct: 22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQA 51
Score = 26.5 bits (57), Expect = 1.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 122 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 151
++ +PYRC H+ C +F +L H +
Sbjct: 22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQA 51
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 27.6 bits (61), Expect = 1.9
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 16 VEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTPG 73
+ + Y I + Y +F + F + +++ + T ++ PG
Sbjct: 11 IIMGKYEIEPWYFSPYPIELTDEDFIYID--DFTLQYFGSKKQYERYRKKCTLRHPPG 66
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 27.5 bits (60), Expect = 2.0
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 30 KAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
H GEK + E + DL+ + +
Sbjct: 197 TIHRNLARGEKRLQR--EKSEQVLDNPEDLRGPIHLSVLR 234
Score = 27.5 bits (60), Expect = 2.0
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 116 KAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
H GEK + E + DL+ + +
Sbjct: 197 TIHRNLARGEKRLQR--EKSEQVLDNPEDLRGPIHLSVLR 234
Score = 25.9 bits (56), Expect = 7.0
Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 81 IVREDFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 126
+ ++ +H + G + + E E+ + I +
Sbjct: 192 SMSQETIHRNLARGEKRLQR--EKSEQVLDNPEDLRGPIHLSVLRQ 235
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 24.8 bits (53), Expect = 2.9
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 10 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 39
R Y CPV CEK+FS K+HI+T+ E
Sbjct: 8 RSYSCPV--CEKSFSEDRLIKSHIKTNHPE 35
Score = 24.8 bits (53), Expect = 2.9
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 96 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 125
R Y CPV CEK+FS K+HI+T+ E
Sbjct: 8 RSYSCPV--CEKSFSEDRLIKSHIKTNHPE 35
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA;
3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 27.6 bits (62), Expect = 2.9
Identities = 4/9 (44%), Positives = 5/9 (55%)
Query: 85 DFVHLRIHS 93
F HL H+
Sbjct: 6 KFAHLHQHT 14
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (54), Expect = 3.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 49 CSKSFKTSGDLQKHVRTHTGKYTPGPG 75
C K F+ S L +H H G+ P G
Sbjct: 18 CGKIFRHSSLLIEHQALHAGESGPSSG 44
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 24.6 bits (53), Expect = 3.9
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 39 EKPYRCAHEFCSKSFKTSGDLQKHVRTHT 67
+KP+ C C + F L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 24.6 bits (53), Expect = 3.9
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 125 EKPYRCAHEFCSKSFKTSGDLQKHVRTHT 153
+KP+ C C + F L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.5 bits (53), Expect = 4.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 42 YRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
Y+ A C K F S L H+ H K
Sbjct: 1 YKFACPECPKRFMRSDHLTLHILLHENK 28
Score = 24.5 bits (53), Expect = 4.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 128 YRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
Y+ A C K F S L H+ H K
Sbjct: 1 YKFACPECPKRFMRSDHLTLHILLHENK 28
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, beta, PHP, transferase; HET:
DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Length = 910
Score = 26.7 bits (60), Expect = 5.5
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 85 DFVHLRIHS 93
FVHLR+HS
Sbjct: 5 RFVHLRVHS 13
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 23.7 bits (51), Expect = 6.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 42 YRCAHEFCSKSFKTSGDLQKHVRTHTGK 69
Y+ A C K F S L KH+ H
Sbjct: 1 YKFACPECPKRFMRSDHLSKHITLHELL 28
Score = 23.7 bits (51), Expect = 6.2
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 128 YRCAHEFCSKSFKTSGDLQKHVRTHTGK 155
Y+ A C K F S L KH+ H
Sbjct: 1 YKFACPECPKRFMRSDHLSKHITLHELL 28
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 25.2 bits (54), Expect = 6.4
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 12 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYT 71
CP T K H+ ++ + C H C K ++ ++ HV +
Sbjct: 35 VSCP-TCQAVGRKTIEGLKKHMENC-KQEMFTCHH--CGKQLRSLAGMKYHVMANHNSLP 90
Query: 72 PGP 74
GP
Sbjct: 91 SGP 93
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 23.8 bits (51), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 42 YRCAHEFCSKSFKTSGDLQKHVRTHTG 68
Y C E C +SF L +H + HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
Score = 23.8 bits (51), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 128 YRCAHEFCSKSFKTSGDLQKHVRTHTG 154
Y C E C +SF L +H + HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 25.1 bits (54), Expect = 7.8
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 85 DFVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT-HTG---EKPYRCAHEFCSKSFK 140
+ + Y+C YC H+ + H Y C C+ K
Sbjct: 6 HHHNQQNKKVEGGYECK--YCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCV--ECNFLTK 61
Query: 141 TSGDLQKHV-RTHTG 154
L +H + H G
Sbjct: 62 RYDALSEHNLKYHPG 76
Score = 24.7 bits (53), Expect = 9.8
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 2 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT-HTG---EKPYRCAHEFCSKSFKTSG 57
+ + Y+C YC H+ + H Y C C+ K
Sbjct: 9 NQQNKKVEGGYECK--YCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCV--ECNFLTKRYD 64
Query: 58 DLQKHV-RTHTG 68
L +H + H G
Sbjct: 65 ALSEHNLKYHPG 76
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 25.9 bits (57), Expect = 7.8
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 58 DLQKHVRTHTGKYTPGPGIDSRLIV--REDFVHL 89
L + + K+ G G + +D V +
Sbjct: 21 KLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSM 54
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 24.9 bits (53), Expect = 7.9
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 3/58 (5%)
Query: 110 STQYSRKAHIRT-HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTGKYTAEVPGSILD 166
T K H+ + +C H C K FK+ L H ++ S
Sbjct: 36 KTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMAEHSAKPSDAEASEGG 91
Score = 24.9 bits (53), Expect = 8.2
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 24 STQYSRKAHIRT-HTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 65
T K H+ + +C H C K FK+ L H
Sbjct: 36 KTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMA 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.442
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,654,105
Number of extensions: 142751
Number of successful extensions: 2088
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1135
Number of HSP's successfully gapped: 741
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.2 bits)