BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8969
(1230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 452 bits (1163), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/524 (44%), Positives = 339/524 (64%), Gaps = 33/524 (6%)
Query: 288 ERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQ 347
E+I++ +P V E +EL + + S S+E +V RNY+DWL +LPW ++++ LDL +
Sbjct: 15 EKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDKLDLKE 74
Query: 348 AAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR 407
A ++LD++H+G+E VK+RILE++AV +L + +G ILC GPPGVGKTS+AKSIA++L R
Sbjct: 75 AGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGR 134
Query: 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGD 467
++ R S+GG+ D +EI+GHRRTYVGAMPG++IQ MKK NP+ L+DE+DK+ + GD
Sbjct: 135 KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGD 194
Query: 468 PASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYV 527
P+SA+LE+LDPEQN++F DHY++ DLS+VLFI TAN + TIP PLRDRME+I+++GY
Sbjct: 195 PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYT 254
Query: 528 AEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRK 587
EK+ I +L+P+ +KE GL + L AI +I+ Y RE+GVR+L++ + + RK
Sbjct: 255 EIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRK 314
Query: 588 VALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVKKESDKVT 647
A IV +E ++TVT NL DF+GK IF + + GVVT +A T V ++ +
Sbjct: 315 AAKAIVAEERKRITVTEKNLQDFIGKRIFRYGQAETEDQVGVVT-GLAYTTVGGDTLSIE 373
Query: 648 VTNDNLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAM----------------------- 684
V+ LS GK I + +L ++ ++
Sbjct: 374 VS---LSPGKGKLILT-GKLGDVMRESAQAAFSYVRSKTEELGIEPDFHEKYDIHIHVPE 429
Query: 685 -AVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVG 743
AV KDGP+AGIT+ TALVS TG+ + + + MTGEI+L G+VLP+GG+KEK + A R G
Sbjct: 430 GAVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVLPIGGLKEKALGAHRAG 489
Query: 744 VHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHT 787
+ TI+ P++N+KD D+PE +REGL S D V EH
Sbjct: 490 LTTIIAPKDNEKDIEDIPESVREGLTFILASHL----DEVLEHA 529
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 86/147 (58%), Gaps = 17/147 (11%)
Query: 925 QSSLTSYYSFVHFSGSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANI 984
Q + + ++ G TL IE S+ G L LTG LGDVM+ESA
Sbjct: 353 QVGVVTGLAYTTVGGDTLSIEVSL-------------SPGKGKLILTGKLGDVMRESAQA 399
Query: 985 SLTVARNFLST--IEPDNTFLNTRHLHLHVPEGAVKKDGPSAGITITTALVSLATGKPIK 1042
+ + R+ IEPD F +H+HVPEGAV KDGP+AGIT+ TALVS TG+ +
Sbjct: 400 AFSYVRSKTEELGIEPD--FHEKYDIHIHVPEGAVPKDGPAAGITMATALVSALTGRAVS 457
Query: 1043 QNLAMTGEISLVGKVLPVGGIKEKTIA 1069
+ + MTGEI+L G+VLP+GG+KEK +
Sbjct: 458 REVGMTGEITLRGRVLPIGGLKEKALG 484
>pdb|2X36|A Chain A, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|B Chain B, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|D Chain D, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|E Chain E, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|F Chain F, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
pdb|2X36|C Chain C, Structure Of The Proteolytic Domain Of The Human
Mitochondrial Lon Protease
Length = 207
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/139 (63%), Positives = 104/139 (74%), Gaps = 4/139 (2%)
Query: 933 SFVHFSGSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNF 992
++ GSTLF+ETS+R+P D DK DGSL +TG LG+VMKESA I+ T AR F
Sbjct: 17 AWTAMGGSTLFVETSLRRPQD--KDAKGDK--DGSLEVTGQLGEVMKESARIAYTFARAF 72
Query: 993 LSTIEPDNTFLNTRHLHLHVPEGAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEIS 1052
L P N +L T H+HLHVPEGA KDGPSAG TI TAL+SLA G+P++QNLAMTGE+S
Sbjct: 73 LMQHAPANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVS 132
Query: 1053 LVGKVLPVGGIKEKTIALK 1071
L GK+LPVGGIKEKTIA K
Sbjct: 133 LTGKILPVGGIKEKTIAAK 151
Score = 149 bits (376), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 82/100 (82%)
Query: 685 AVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGV 744
A KDGPSAG TI TAL+SLA G+P++QNLAMTGE+SL GK+LPVGGIKEKTIAAKR GV
Sbjct: 96 ATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGV 155
Query: 745 HTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVF 784
I++P ENKKDF DL +I EGL VHFV +R+++D+ F
Sbjct: 156 TCIVLPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAF 195
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 20/21 (95%)
Query: 665 DRLFEITPPGVVMGLAWTAMA 685
+R++++TPPGVVMGLAWTAM
Sbjct: 2 ERMYDVTPPGVVMGLAWTAMG 22
>pdb|1RR9|A Chain A, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|B Chain B, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|C Chain C, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|D Chain D, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|E Chain E, Catalytic Domain Of E.Coli Lon Protease
pdb|1RR9|F Chain F, Catalytic Domain Of E.Coli Lon Protease
Length = 200
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 9/135 (6%)
Query: 966 GSLFLTGHLGDVMKESANISLTVARNFLSTIEPDNTFLNTRHLHLHVPEGAVKKDGPSAG 1025
G L TG LG+VM+ES +LTV R + + F R +H+HVPEGA KDGP+AG
Sbjct: 38 GKLTYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAG 97
Query: 1026 ITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIA---------LKPLIQQ 1076
I + TALVS TG P++ ++AMTGEI+L G+VLP+GG+KEK +A L P +
Sbjct: 98 IAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENK 157
Query: 1077 QEQHKSKMFIIVDLD 1091
++ + +I DLD
Sbjct: 158 RDLEEIPDNVIADLD 172
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 19/154 (12%)
Query: 633 KVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPS 692
+ ALT+V+ ++K+ + D F R + P A KDGP+
Sbjct: 55 QAALTVVRARAEKLGINPD----------FYEKRDIHVHVP---------EGATPKDGPA 95
Query: 693 AGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEE 752
AGI + TALVS TG P++ ++AMTGEI+L G+VLP+GG+KEK +AA R G+ T+L+P E
Sbjct: 96 AGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFE 155
Query: 753 NKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEH 786
NK+D ++P+ + L++H V +V L ++
Sbjct: 156 NKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQN 189
>pdb|1RRE|A Chain A, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|B Chain B, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|C Chain C, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|D Chain D, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|E Chain E, Crystal Structure Of E.Coli Lon Proteolytic Domain
pdb|1RRE|F Chain F, Crystal Structure Of E.Coli Lon Proteolytic Domain
Length = 200
Score = 108 bits (269), Expect = 3e-23, Method: Composition-based stats.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 9/135 (6%)
Query: 966 GSLFLTGHLGDVMKESANISLTVARNFLSTIEPDNTFLNTRHLHLHVPEGAVKKDGPSAG 1025
G L TG LG+V +ES +LTV R + + F R +H+HVPEGA KDGP+AG
Sbjct: 38 GKLTYTGSLGEVXQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPAAG 97
Query: 1026 ITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIA---------LKPLIQQ 1076
I TALVS TG P++ ++A TGEI+L G+VLP+GG+KEK +A L P +
Sbjct: 98 IAXCTALVSCLTGNPVRADVAXTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFENK 157
Query: 1077 QEQHKSKMFIIVDLD 1091
++ + +I DLD
Sbjct: 158 RDLEEIPDNVIADLD 172
Score = 104 bits (260), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 19/154 (12%)
Query: 633 KVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPS 692
+ ALT+V+ ++K+ + P F R + P A KDGP+
Sbjct: 55 QAALTVVRARAEKLGIN----------PDFYEKRDIHVHVP---------EGATPKDGPA 95
Query: 693 AGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEE 752
AGI TALVS TG P++ ++A TGEI+L G+VLP+GG+KEK +AA R G+ T+L+P E
Sbjct: 96 AGIAXCTALVSCLTGNPVRADVAXTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFE 155
Query: 753 NKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEH 786
NK+D ++P+ + L++H V +V L ++
Sbjct: 156 NKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQN 189
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 71/119 (59%), Gaps = 6/119 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ CP C +SF+ + H RTHTGEKPY C E C KSF+ + + H R
Sbjct: 72 HTGEKPYKCPE--CGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRT 127
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 904
H+GEKPY C +C K F+ +L+ H H+ +P+ C C +S+ + LNVH++T+
Sbjct: 128 HTGEKPYKCP--ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 72/125 (57%), Gaps = 6/125 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
E+P+ CP C +SF+ S+ H RTHTGEKPY C E C KSF+ + H R H+G
Sbjct: 19 EKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTG 74
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRES 908
EKPY C +C K F++ ++L H H+ +P+ C C +S+ QL L H++T+ E
Sbjct: 75 EKPYKCP--ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEK 132
Query: 909 KNKKP 913
K P
Sbjct: 133 PYKCP 137
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 72/128 (56%), Gaps = 6/128 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ CP C +SF+ H RTHTGEKPY C E C KSF+ N + H R
Sbjct: 44 HTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRAHQRT 99
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 905
H+GEKPY C +C K F++ + L H H+ +P+ C C +S+ + L+ H++T+
Sbjct: 100 HTGEKPYACP--ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Query: 906 RESKNKKP 913
E K P
Sbjct: 158 GEKPYKCP 165
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
CPEC K+FS + H+ H R H+G +PYKCP C K+FS + H RTHTGEKPY+C
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 1198 AHEFCSKSFKTSGDLQKHVRTHTDE 1222
C KSF +L+ H RTHT E
Sbjct: 81 PE--CGKSFSQRANLRAHQRTHTGE 103
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
CPEC K+FS +++ H R H+G +PY CP C K+FS +AH RTHTGEKPY+C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
C KSF +L H RTHT E
Sbjct: 138 E--CGKSFSREDNLHTHQRTHTGE 159
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
CPEC K+FS H++ H R H+G +PYKCP C K+FS + + H RTHTGEKPY+C
Sbjct: 107 ACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKC 164
Query: 1198 AHEFCSKSFKTSGDLQKHVRTHT 1220
C KSF L H RTHT
Sbjct: 165 PE--CGKSFSRRDALNVHQRTHT 185
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 818 GEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
GEKPY C E C KSF+ + + H R H+GEKPY C +C K F++ L +H H+
Sbjct: 18 GEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCP--ECGKSFSDKKDLTRHQRTHT 73
Query: 878 DIRPFICDRCPRSYRQLCTLNVHKKTN 904
+P+ C C +S+ Q L H++T+
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ CP C +SF+ + H RTHTGEKPY C E C KSF+ H R
Sbjct: 128 HTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKCPE--CGKSFSRRDALNVHQRT 183
Query: 846 HSGEK 850
H+G+K
Sbjct: 184 HTGKK 188
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
CPEC K+FS ++ H R H+G +PYKCP C K+FS + + H RTHTG+K
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKCPE--CGKSFSRRDALNVHQRTHTGKK 188
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 766 EGLNVHFVSEWRQVYDLVFEH--TSERPFPCPVLGCDRS---FTTSNIRKVHIRTHTGEK 820
+G + F S+ + V+ + EH + F C GC R F + VH+R HTGEK
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 821 PYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKH-TLVHSDI 879
P+ C GC KS++ N K H+R H+GEKPY+C+ C K F+ S KH HS+
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 880 RPFICD--RCPRSYRQLCTLNVHKKTNH 905
+P++C C + Y +L H KT H
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 1144 KTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCS 1203
+ F + + + VH+R H+G +P+KC E C K++S + K H+R+HTGEKPY C HE CS
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 1204 KSFKTSGDLQKHV-RTHTDE 1222
K+F + D KH RTH++E
Sbjct: 107 KAFSNASDRAKHQNRTHSNE 126
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 1142 CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEKPYRCAHE 1200
C+K++S ++K HLR H+G +PY C E C KAFS R H RTH+ EKPY C
Sbjct: 75 CRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLP 134
Query: 1201 FCSKSFKTSGDLQKHVRT 1218
C+K + L+KHV+T
Sbjct: 135 GCTKRYTDPSSLRKHVKT 152
>pdb|1X37|A Chain A, Structure Of Bacillus Subtilis Lon Protease Ssd Domain
Length = 124
Score = 84.3 bits (207), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 69/118 (58%)
Query: 523 VSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIE 582
++GY EK+ I +L+P+ +KE GL + L AI +I+ Y RE+GVR+L++ +
Sbjct: 1 MAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLA 60
Query: 583 KVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVK 640
+ RK A IV +E ++TVT NL DF+GK IF + + GVVT T+++
Sbjct: 61 AICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRYGQAETEDQVGVVTGLAYTTVLR 118
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 84.0 bits (206), Expect = 5e-16, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHM- 843
+HT E+PFPC GC++ FT+ + H THTGEK + C GCD F + N K H
Sbjct: 36 KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 95
Query: 844 RIHSGEK-PYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVH 900
R H+ + YVC +C K F +++ L H H+ P+ C + C + + L H
Sbjct: 96 RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Query: 901 KKTN 904
+K +
Sbjct: 156 EKVH 159
Score = 70.1 bits (170), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+ C C ++ + + H+ HTGEKP+ C E GC+K F S + H H+GEK
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 852 YVCQVRDCQKRFTEYSSLYKHTLVHSDIR--PFIC--DRCPRSYRQLCTLNVHKKTNHRE 907
+ C C RFT +++ KH +I+ ++C + C +++++ L VH+ ++ ++
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 1141 ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHE 1200
+C ++ ++ HL H+G +P+ C E CEK F++ + H THTGEK + C +
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 1201 FCSKSFKTSGDLQKH 1215
C F T +++KH
Sbjct: 79 GCDLRFTTKANMKKH 93
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 879
K Y+C A C ++ + H+ H+GEKP+ C+ C+K FT L +H+L H+
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 880 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNK 911
+ F CD C L K N ++ N+
Sbjct: 71 KNFTCD------SDGCDLRFTTKANMKKHFNR 96
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 1142 CKKTFSSAHHMKVHL-RIHS-GIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
C F++ +MK H R H+ I Y C E C KAF K H +HT + PY C H
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 1200 EFCSKSFKTSGDLQKHVRTH 1219
E C K F L++H + H
Sbjct: 140 EGCDKRFSLPSRLKRHEKVH 159
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 1139 CPE--CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK--P 1194
C E C+K F+S HH+ H H+G + + C + C+ F+T+ + K H K
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV 104
Query: 1195 YRCAHEFCSKSFKTSGDLQKHVRTHTDEF 1223
Y C E C K+FK L+ H +HT +
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
Y C C A++ + +AH+ HTGEKP+ C E C K F + L +H THT E
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+ C C ++F N KVH +HT + PY C GCDK F+ + K H ++H+G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--- 161
Query: 852 YVCQVRD 858
Y C+ D
Sbjct: 162 YPCKKDD 168
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 1142 CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH-E 1200
C K F + +KVH H+ PY+CP E C+K FS K H + H G Y C +
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDD 168
Query: 1201 FCSKSFKTSGDLQKHV-RTHTD 1221
CS KT KHV H D
Sbjct: 169 SCSFVGKTWTLYLKHVAECHQD 190
Score = 37.7 bits (86), Expect = 0.045, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 784 FEHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTG 818
F HT + P+ CP GCD+ F+ + K H + H G
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 83.2 bits (204), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
+ +RPF C GC++ + + ++H R HTGEKPY C C++ F+ + K H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+G KP+ C+ CQ++F+ L HT H+ +PF C
Sbjct: 62 TGVKPFQCKT--CQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 82.0 bits (201), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR 844
+HT E+P+ C C+R F+ S+ K H R HTG KP+ C C + F+ + + K H R
Sbjct: 30 KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTR 87
Query: 845 IHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
H+GEKP+ C+ CQK+F L +H +H
Sbjct: 88 THTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
++P++C GC+K + ++ + H R H+GEKPY C +DC++RF+ L +H H+
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKP 913
++PF C C R + + + H KT+ R +KP
Sbjct: 64 VKPFQCKTCQRKFSR----SDHLKTHTRTHTGEKP 94
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
P C K + H+++H R H+G +PY+C + CE+ FS K H R HTG KP++C
Sbjct: 12 PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC-- 69
Query: 1200 EFCSKSFKTSGDLQKHVRTHTDE 1222
+ C + F S L+ H RTHT E
Sbjct: 70 KTCQRKFSRSDHLKTHTRTHTGE 92
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 1141 ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHE 1200
+C++ FS + +K H R H+G++P++C + C++ FS K H RTHTGEKP+ C
Sbjct: 43 DCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWP 100
Query: 1201 FCSKSFKTSGDLQKHVRTH 1219
C K F S +L +H H
Sbjct: 101 SCQKKFARSDELVRHHNMH 119
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
RP+ C C K + + H R HTGEKPY+C + C + F S L++H R HT
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT 62
Score = 43.9 bits (102), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 1189
C C++ FS + H+K H R H+G +P+ C C+K F+ H H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.4 bits (85), Expect = 0.056, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQLCTLNVHKK 902
S ++P++C C KR+ + S L H+ H+ +P+ CD C R + + L H++
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR 59
Score = 30.4 bits (67), Expect = 7.0, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
++P+ CA+ C+K + LQ H R HT E
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGE 34
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound To
Dna
Length = 87
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
CPEC K+FS + +++ H R H+G +PYKCP C K+FS + H RTHTGEKPY+C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPE--CGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
C KSF S L +H RTH ++
Sbjct: 65 E--CGKSFSRSDHLSRHQRTHQNK 86
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 6/92 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
E+P+ CP G +SF+ S+ + H RTHTGEKPY C E G KSF+ +++ + H R H+G
Sbjct: 2 EKPYKCPECG--KSFSQSSNLQKHQRTHTGEKPYKCPECG--KSFSQSSDLQKHQRTHTG 57
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIR 880
EKPY C +C K F+ L +H H + +
Sbjct: 58 EKPYKCP--ECGKSFSRSDHLSRHQRTHQNKK 87
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
EKPY C E G KSF+ ++N + H R H+GEKPY C +C K F++ S L KH H+
Sbjct: 2 EKPYKCPECG--KSFSQSSNLQKHQRTHTGEKPYKCP--ECGKSFSQSSDLQKHQRTHTG 57
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTN 904
+P+ C C +S+ + L+ H++T+
Sbjct: 58 EKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ CP G +SF+ S+ + H RTHTGEKPY C E G KSF+ + + H R
Sbjct: 27 HTGEKPYKCPECG--KSFSQSSDLQKHQRTHTGEKPYKCPECG--KSFSRSDHLSRHQRT 82
Query: 846 HSGEK 850
H +K
Sbjct: 83 HQNKK 87
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
CPEC K+FS + ++ H R H+G +PYKCP C K+FS H RTH +K
Sbjct: 35 CPECGKSFSQSSDLQKHQRTHTGEKPYKCPE--CGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 19/157 (12%)
Query: 703 SLATGKPIKQNLAMT----GEISLVGKVLPVGGIKEKTIAAKRVGVHTILM-----PEEN 753
S ++G+PIKQ L+ ++S K ++T + V + M PE+N
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSC------DRTFSTMHELVTHVTMEHVGGPEQN 56
Query: 754 KKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHTSERPFPCPVLGCDRSFTTSNIRKVHI 813
E REG + F ++++ V + + HT E+PFPCP GC + F S K+H
Sbjct: 57 N-HVCYWEECPREGKS--FKAKYKLV-NHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
RTHTGEKP+ C GCD+ FA++++ K HM +H+ +K
Sbjct: 113 RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
CP K+F + + + H+R+H+G +P+ CP C K F+ + K H RTHTGEKP++C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
E C + F S D +KH+ HT +
Sbjct: 125 FEGCDRRFANSSDRKKHMHVHTSD 148
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 794 CPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYV 853
CP G +SF HIR HTGEKP+ C GC K FA + N K H R H+GEKP+
Sbjct: 65 CPREG--KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 854 CQVRDCQKRFTEYSSLYKHTLVHS 877
C+ C +RF S KH VH+
Sbjct: 123 CEFEGCDRRFANSSDRKKHMHVHT 146
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 795 PVLGCDRSFTTSNIRKVHIRT-HTG---EKPYVCGEAGC---DKSFASATNYKNHMRIHS 847
P CDR+F+T + H+ H G + +VC C KSF + NH+R+H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 848 GEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 885
GEKP+ C C K F +L H H+ +PF C+
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
P C K F+ + ++K+H R H+G +P+KC E C++ F+ RK H+ HT +K
Sbjct: 96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 34/92 (36%), Gaps = 37/92 (40%)
Query: 1168 PVEYCEKAFST-------------------------------------QYSRKAHIRTHT 1190
P + C++ FST +Y HIR HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 1191 GEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
GEKP+ C C K F S +L+ H RTHT E
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ TN H+RIH+G+KP+ C++ C + F++++ L +H H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+PF CD C R + L T + H K + R+
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 81.3 bits (199), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ HIR HTG+KP+ C C ++F+ T H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQHTGLNQHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F + +HT +H
Sbjct: 60 EKPFACDI--CGRKFATLHTRDRHTKIH 85
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS ++ H+RIH+G +P++C + C + FS HIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F T +H + H
Sbjct: 65 C--DICGRKFATLHTRDRHTKIH 85
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS + + HIR HTG+KP++C C ++F L +H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQHTGLNQHIRTHTGE 60
Score = 33.5 bits (75), Expect = 0.78, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F +L H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ 32
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
HT E+PF C + C R F T + R H + H +K
Sbjct: 57 HTGEKPFACDI--CGRKFATLHTRDRHTKIHLRQK 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ S+ HIR HTG+KP+ C C ++F+ + + H+R H+G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTG 58
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F +HT +H
Sbjct: 59 EKPFACDI--CGRKFARSDERKRHTKIH 84
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS + + H+RIH+G +P++C + C + FS HIRTHTGEKP+
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F S + ++H + H
Sbjct: 64 C--DICGRKFARSDERKRHTKIH 84
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 58
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+PF CD C R + + H K + R+
Sbjct: 59 EKPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHT E
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 59
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F S +L +H+R HT +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ 31
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTH 816
HT E+PF C + C R F S+ RK H + H
Sbjct: 56 HTGEKPFACDI--CGRKFARSDERKRHTKIH 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ S+ HIR HTG+KP+ C C ++F+ + + H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F +HT +H
Sbjct: 60 EKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS + + H+RIH+G +P++C + C + FS HIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F S + ++H + H
Sbjct: 65 C--DICGRKFARSDERKRHTKIH 85
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHR 906
+PF CD C R + + H K + R
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
E+PY C V C +RF+ L +H +H+ +PF C C R++ + L H +T+ E
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F S +L +H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ 32
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTH 816
HT E+PF C + C R F S+ RK H + H
Sbjct: 57 HTGEKPFACDI--CGRKFARSDERKRHTKIH 85
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ S HIR HTG+KP+ C C ++F+ + + H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F +HT +H
Sbjct: 60 EKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ + + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+PF CD C R + + H K + R+
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS S HIR HTG+KP++C C ++F S L H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS + + H+RIH+G +P++C + C + FS HIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F S + ++H + H
Sbjct: 65 C--DICGRKFARSDERKRHTKIH 85
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT ++PF C + C R+F+ S+ HIRTHTGEKP+ C C + FA + K H +I
Sbjct: 29 HTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKI 84
Query: 846 HSGEK 850
H +K
Sbjct: 85 HLRQK 89
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C C + FS + H+ H+R H+G +P+ C + C + F+ RK H + H +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F SG L +H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ 32
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 80.9 bits (198), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ S+ HIR HTG+KP+ C C ++F+ + + H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F +HT +H
Sbjct: 60 EKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS + + H+RIH+G +P++C + C + FS HIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F S + ++H + H
Sbjct: 65 C--DICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+PF CD C R + + H K + R+
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT ++PF C + C R+F+ S+ HIRTHTGEKP+ C C + FA + K H +I
Sbjct: 29 HTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKI 84
Query: 846 HSGEK 850
H +K
Sbjct: 85 HLRQK 89
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C C + FS + H+ H+R H+G +P+ C + C + F+ RK H + H +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F S +L +H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ 32
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ S+ HIR HTG+KP+ C C ++F+ + + H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F +HT +H
Sbjct: 60 EKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ ++N H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+PF CD C R + + H K + R+
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS + ++ H+RIH+G +P++C + C + FS HIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F S + ++H + H
Sbjct: 65 C--DICGRKFARSDERKRHTKIH 85
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS + HIR HTG+KP++C C ++F S L H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT ++PF C + C R+F+ S+ HIRTHTGEKP+ C C + FA + K H +I
Sbjct: 29 HTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKI 84
Query: 846 HSGEK 850
H +K
Sbjct: 85 HLRQK 89
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C C + FS + H+ H+R H+G +P+ C + C + F+ RK H + H +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F S +L +H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQ 32
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 80.5 bits (197), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ TN H+RIH+G+KP+ C++ C + F++ +SL H H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+PF CD C R + L T H K + R+
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 80.1 bits (196), Expect = 7e-15, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ HIR HTG+KP+ C C ++F+ + H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQQASLNAHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F + +HT +H
Sbjct: 60 EKPFACDI--CGRKFATLHTRTRHTKIH 85
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS ++ H+RIH+G +P++C + C + FS Q S AHIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F T +H + H
Sbjct: 65 C--DICGRKFATLHTRTRHTKIH 85
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS + + HIR HTG+KP++C C ++F L H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQQASLNAHIRTHTGE 60
Score = 33.5 bits (75), Expect = 0.78, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F +L H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ 32
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
HT E+PF C + C R F T + R H + H +K
Sbjct: 57 HTGEKPFACDI--CGRKFATLHTRTRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 79.7 bits (195), Expect = 8e-15, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ S HIR HTG+KP+ C C ++F+ + + H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F +HT +H
Sbjct: 60 EKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ + + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+PF CD C R + + H K + R+
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS + + H+RIH+G +P++C + C + FS HIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F S + ++H + H
Sbjct: 65 C--DICGRKFARSDERKRHTKIH 85
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT ++PF C + C R+F+ S+ HIRTHTGEKP+ C C + FA + K H +I
Sbjct: 29 HTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKI 84
Query: 846 HSGEK 850
H +K
Sbjct: 85 HLRQK 89
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C C + FS + H+ H+R H+G +P+ C + C + F+ RK H + H +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
Score = 38.1 bits (87), Expect = 0.027, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F S DL +H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQ 32
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 79.7 bits (195), Expect = 9e-15, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ S HIR HTG+KP+ C C ++F+ + + H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C + C ++F +HT +H
Sbjct: 60 EKPFACDI--CGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS + + H+RIH+G +P++C + C + FS HIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C + F S + ++H + H
Sbjct: 65 C--DICGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+PF CD C R + + H K + R+
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 58.5 bits (140), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT ++PF C + C R+F+ S+ HIRTHTGEKP+ C C + FA + K H +I
Sbjct: 29 HTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKI 84
Query: 846 HSGEK 850
H +K
Sbjct: 85 HLRQK 89
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C C + FS + H+ H+R H+G +P+ C + C + F+ RK H + H +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89
Score = 36.6 bits (83), Expect = 0.089, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F S +L +H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQ 32
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
P C K ++ + H+K HLR H+G +PYKC E C+ F+ H R HTG KP++C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG- 79
Query: 1200 EFCSKSFKTSGDLQKHVRTHTD 1221
C++SF S L H++ H +
Sbjct: 80 -VCNRSFSRSDHLALHMKRHQN 100
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 794 CPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYV 853
C GC + +T S+ K H+RTHTGEKPY C GCD FA + H R H+G KP+
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 854 CQVRDCQKRFTEYSSLYKHTLVHSD 878
C V C + F+ L H H +
Sbjct: 78 CGV--CNRSFSRSDHLALHMKRHQN 100
Score = 67.0 bits (162), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
+ C GC K + +++ K H+R H+GEKPY C C RF L +H H+ +P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 882 FICDRCPRSYRQLCTLNVHKK 902
F C C RS+ + L +H K
Sbjct: 76 FQCGVCNRSFSRSDHLALHMK 96
Score = 60.1 bits (144), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
R + C C K ++ KAH+RTHTGEKPY+C E C F S +L +H R HT
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ C GCD F S+ H R HTG KP+ CG C++SF+ + + HM+
Sbjct: 40 HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRSDHLALHMKR 97
Query: 846 H 846
H
Sbjct: 98 H 98
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%)
Query: 1137 NVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
+VC EC K F + +K H +H+G +P++C E C K FS ++ + H+R HTG++PY
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTH 1219
C + C+K F S +L+ H+ TH
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTH 117
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
R CP GC + F ++ + H+ TH G + +VC E C K+F ++ K H +H+GE
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGE 60
Query: 850 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVHKKTNHRE 907
KP+ C C KRF+ +L H +H+ RP++C D C + + Q L H T H +
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT-HAK 119
Query: 908 SKNKK 912
+KN +
Sbjct: 120 AKNNQ 124
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+PF C GC + F+ + H+R HTG++PYVC GC+K FA +TN K+H+
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 846 HSGEK 850
H+ K
Sbjct: 117 HAKAK 121
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 1138 VCPE--CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
CP C K F M+ HL H G R + C C KAF K H HTGEKP+
Sbjct: 7 ACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 1196 RCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+C E C K F +L+ HVR HT +
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 1142 CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C K FS +++ H+RIH+G RPY CP + C K F+ + K+HI TH K
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 72.8 bits (177), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 794 CPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYV 853
C GC +++T S+ K H+RTHTGEKPY C GC FA + H R H+G +P+
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 854 CQVRDCQKRFTEYSSLYKHTLVH 876
CQ C + F+ L H H
Sbjct: 69 CQ--KCDRAFSRSDHLALHMKRH 89
Score = 70.1 bits (170), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
+ C AGC K++ +++ K H+R H+GEKPY C C +F L +H H+ RP
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 66
Query: 882 FICDRCPRSYRQLCTLNVHKK 902
F C +C R++ + L +H K
Sbjct: 67 FQCQKCDRAFSRSDHLALHMK 87
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 1142 CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEF 1201
C KT++ + H+K HLR H+G +PY C + C F+ H R HTG +P++C +
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QK 71
Query: 1202 CSKSFKTSGDLQKHVRTH 1219
C ++F S L H++ H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
+ C C K ++ KAH+RTHTGEKPY C + C F S +L +H R HT
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ C GC F S+ H R HTG +P+ C + CD++F+ + + HM+
Sbjct: 31 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFSRSDHLALHMKR 88
Query: 846 H 846
H
Sbjct: 89 H 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 794 CPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYV 853
C GC +++T S+ K H+RTHTGEKPY C GC FA + H R H+G +P+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 854 CQVRDCQKRFTEYSSLYKHTLVH 876
CQ C + F+ L H H
Sbjct: 68 CQ--KCDRAFSRSDHLALHMKRH 88
Score = 69.7 bits (169), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
+ C AGC K++ +++ K H+R H+GEKPY C C +F L +H H+ RP
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 882 FICDRCPRSYRQLCTLNVHKK 902
F C +C R++ + L +H K
Sbjct: 66 FQCQKCDRAFSRSDHLALHMK 86
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 1142 CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEF 1201
C KT++ + H+K HLR H+G +PY C + C F+ H R HTG +P++C +
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC--QK 70
Query: 1202 CSKSFKTSGDLQKHVRTH 1219
C ++F S L H++ H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
+ C C K ++ KAH+RTHTGEKPY C + C F S +L +H R HT
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ C GC F S+ H R HTG +P+ C + CD++F+ + + HM+
Sbjct: 30 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFSRSDHLALHMKR 87
Query: 846 H 846
H
Sbjct: 88 H 88
>pdb|1QZM|A Chain A, Alpha-Domain Of Atpase
Length = 94
Score = 67.0 bits (162), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 524 SGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEK 583
SGY +EK+ IA ++L+P+ ++ + L ++T++ SAI +I+ Y RE+GVR L++ I K
Sbjct: 1 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISK 60
Query: 584 VTRK-VALTIVKKESDKVTVTNDNLSDFVG 612
+ RK V ++ K + + DNL D++G
Sbjct: 61 LCRKAVKQLLLDKSLKHIEINGDNLHDYLG 90
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+ C C ++ + + H+ HTGEKP+ C E GC+K F S + H H+GEK
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 852 YVCQVRDCQKRFTEYSSLYKH 872
+ C C RFT +++ KH
Sbjct: 64 FTCDSDGCDLRFTTKANMKKH 84
Score = 63.9 bits (154), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHM- 843
+HT E+PFPC GC++ FT+ + H THTGEK + C GCD F + N K H
Sbjct: 27 KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFN 86
Query: 844 RIHS 847
R H+
Sbjct: 87 RFHN 90
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 1141 ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHE 1200
+C ++ ++ HL H+G +P+ C E CEK F++ + H THTGEK + C +
Sbjct: 10 DCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 1201 FCSKSFKTSGDLQKH 1215
C F T +++KH
Sbjct: 70 GCDLRFTTKANMKKH 84
Score = 58.2 bits (139), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 879
K Y+C A C ++ + H+ H+GEKP+ C+ C+K FT L +H+L H+
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 880 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNK 911
+ F CD C L K N ++ N+
Sbjct: 62 KNFTCD------SDGCDLRFTTKANMKKHFNR 87
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
Y C C A++ + +AH+ HTGEKP+ C E C K F + L +H THT E
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
+RPY CPVE C++ FS HIR HTG+KP++C C ++F S L H+RTHT
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 73
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHS 847
RP+ CPV CDR F+ S+ HIR HTG+KP+ C C ++F+ + + H+R H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHT 73
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
+PY C CD+ F+ + H+RIH+G+KP+ C++ C + F+ L H H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 850 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 904
+PY C V C +RF+ L +H +H+ +PF C C R++ + L H +T+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 1190
CP C + FS + + H+RIH+G +P++C + C + FS HIRTHT
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+PY C E C + F S +L +H+R HT +
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ 47
>pdb|1Z0C|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
D508a Mutant
Length = 207
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 689 DGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTIL 748
+G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K AA + G+ ++
Sbjct: 92 EGASASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVI 151
Query: 749 MPEENKKDFTDLPEYIREG-LNVHFVSEWRQVYDLVFE 785
+P++N D E+ EG + V VS +V + V E
Sbjct: 152 IPKDNIDDVLLDAEH--EGKIEVIPVSRINEVLEHVLE 187
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 14/108 (12%)
Query: 963 KSDGSLFLTGHLGDVMKESA-NISLTVAR---NFLSTIEPDNTFLNTRHLHLHVPEGAVK 1018
KS+G + TG L ++ +E+ N+S + + +S ++ F+ T EG
Sbjct: 41 KSEGRVIATGRLQEIAREAVMNVSAIIKKYTGRDISNMDVHIQFVGTY-------EGV-- 91
Query: 1019 KDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEK 1066
+G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K
Sbjct: 92 -EGASASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQK 138
>pdb|1Z0W|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain At
1.2a Resolution
Length = 207
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 689 DGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTIL 748
+G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K AA + G+ ++
Sbjct: 92 EGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVI 151
Query: 749 MPEENKKDFTDLPEYIREG-LNVHFVSEWRQVYDLVFE 785
+P++N D E+ EG + V VS +V + V E
Sbjct: 152 IPKDNIDDVLLDAEH--EGKIEVIPVSRINEVLEHVLE 187
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 14/108 (12%)
Query: 963 KSDGSLFLTGHLGDVMKESA-NISLTVAR---NFLSTIEPDNTFLNTRHLHLHVPEGAVK 1018
KS+G + TG L ++ +E+ N+S + + +S ++ F+ T EG
Sbjct: 41 KSEGRVIATGRLQEIAREAVMNVSAIIKKYTGRDISNMDVHIQFVGTY-------EGV-- 91
Query: 1019 KDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEK 1066
+G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K
Sbjct: 92 -EGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQK 138
>pdb|1Z0E|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0E|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0G|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0T|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|B Chain B, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|C Chain C, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|D Chain D, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|E Chain E, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
pdb|1Z0V|F Chain F, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
Length = 205
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 689 DGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTIL 748
+G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K AA + G+ ++
Sbjct: 90 EGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVI 149
Query: 749 MPEENKKDFTDLPEYIREG-LNVHFVSEWRQVYDLVFE 785
+P++N D E+ EG + V VS +V + V E
Sbjct: 150 IPKDNIDDVLLDAEH--EGKIEVIPVSRINEVLEHVLE 185
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 14/108 (12%)
Query: 963 KSDGSLFLTGHLGDVMKESA-NISLTVAR---NFLSTIEPDNTFLNTRHLHLHVPEGAVK 1018
KS+G + TG L ++ +E+ N+S + + +S ++ F+ T EG
Sbjct: 39 KSEGRVIATGRLQEIAREAVMNVSAIIKKYTGRDISNMDVHIQFVGTY-------EGV-- 89
Query: 1019 KDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEK 1066
+G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K
Sbjct: 90 -EGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQK 136
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
+ ++ +PC C +SFT + R H+ H G +PY CG C K F + HM+IH
Sbjct: 6 SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 60
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKH 872
+G KPY C + C KRF S ++H
Sbjct: 61 TGIKPYECNI--CAKRFMWRDSFHRH 84
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 1141 ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHE 1200
+C K+F+ H+ +H G+RPY C V C K F ++ H++ HTG KPY C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYEC--N 69
Query: 1201 FCSKSFKTSGDLQKHVRTHTDEFQMS 1226
C+K F +HV + T ++ +
Sbjct: 70 ICAKRFMWRDSFHRHVTSCTKSYEAA 95
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
+G+K Y C C KSF + HM +H G +PY C V C K+F L H +H
Sbjct: 6 SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 60
Query: 877 SDIRPFICDRCPRSY 891
+ I+P+ C+ C + +
Sbjct: 61 TGIKPYECNICAKRF 75
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C K F HH+ H++IH+GI+PY+C + C K F + S H+ + T K Y A
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSFHRHVTSCT--KSYEAA 95
Score = 37.0 bits (84), Expect = 0.061, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 902
SG+K Y CQ C K FT S +H +H +RP+ C C + ++ L H K
Sbjct: 6 SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>pdb|1Z0B|A Chain A, Crystal Structure Of A. Fulgidus Lon Proteolytic Domain
E506a Mutant
Length = 207
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 690 GPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILM 749
G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K AA + G+ +++
Sbjct: 93 GDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGLKKVII 152
Query: 750 PEENKKDFTDLPEYIREG-LNVHFVSEWRQVYDLVFE 785
P++N D E+ EG + V VS +V + V E
Sbjct: 153 PKDNIDDVLLDAEH--EGKIEVIPVSRINEVLEHVLE 187
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 14/108 (12%)
Query: 963 KSDGSLFLTGHLGDVMKESA-NISLTVAR---NFLSTIEPDNTFLNTRHLHLHVPEGAVK 1018
KS+G + TG L ++ +E+ N+S + + +S ++ F+ T EG
Sbjct: 41 KSEGRVIATGRLQEIAREAVMNVSAIIKKYTGRDISNMDVHIQFVGTY-------EGVA- 92
Query: 1019 KDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEK 1066
G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K
Sbjct: 93 --GDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQK 138
>pdb|1XHK|A Chain A, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain
pdb|1XHK|B Chain B, Crystal Structure Of M. Jannaschii Lon Proteolytic Domain
Length = 187
Score = 63.9 bits (154), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 687 KKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHT 746
K DG SA + A++S P+KQ+ A+TG + L G VL +GG+ EK AAKR G
Sbjct: 92 KIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGFKR 151
Query: 747 ILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFE 785
+++PE N D + EG+ + V ++ LVF+
Sbjct: 152 VIIPEANXIDVIE-----TEGIEIIPVKTLDEIVPLVFD 185
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 975 GDVMKESANISLTVARNFLST----IEPDNTFLNTRHLHLHVPEGAVKKDGPSAGITITT 1030
GD+ K S ++ +++ ++ + + LN + +++ + K DG SA +
Sbjct: 45 GDIAKHSITLASALSKKLVAEKKLPLPKKDIDLNNKEIYIQFSQSYSKIDGDSATAAVCL 104
Query: 1031 ALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIALKPLIQQQEQHKSKMFIIVDL 1090
A++S P+KQ+ A+TG + L G VL +GG+ EK I+ +++ K II +
Sbjct: 105 AIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEK-------IEAAKRYGFKRVIIPEA 157
Query: 1091 DDVD 1094
+ +D
Sbjct: 158 NXID 161
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C K+F + + HL IHS RPY P +YC K F + K H HTGEKP++C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPY--PCQYCGKRFHQKSDMKKHTFIHTGEKPHKC- 60
Query: 1199 HEFCSKSFKTSGDLQKHVRTHT 1220
+ C K+F S +L H R HT
Sbjct: 61 -QVCGKAFSQSSNLITHSRKHT 81
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
F C + C +SF S+ H+ H+ +PY C G K F ++ K H IH+GEKP
Sbjct: 2 FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYPCQYCG--KRFHQKSDMKKHTFIHTGEKP 57
Query: 852 YVCQVRDCQKRFTEYSSLYKHTLVHS 877
+ CQV C K F++ S+L H+ H+
Sbjct: 58 HKCQV--CGKAFSQSSNLITHSRKHT 81
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 829 CDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 888
C KSF ++ H+ IHS +PY CQ C KRF + S + KHT +H+ +P C C
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQVCG 64
Query: 889 RSYRQLCTLNVHKK 902
+++ Q L H +
Sbjct: 65 KAFSQSSNLITHSR 78
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
H+ RP+PC C + F + K H HTGEKP+ C C K+F+ ++N H R
Sbjct: 24 HSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRK 79
Query: 846 HSG 848
H+G
Sbjct: 80 HTG 82
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 1191
C C K F MK H IH+G +P+KC V C KAFS + H R HTG
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITHSRKHTG 82
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 1172 CEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
C K+F + H+ H+ +PY C ++C K F D++KH HT E
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGE 55
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 22/141 (15%)
Query: 951 PTSVATDPADDKKSDGSLFLTGHLGDVMKESA-NISLTVAR---NFLSTIEPDNTFLNTR 1006
P PA K+ +G + +TG LG++ KE+ N+S + R +S + FL T
Sbjct: 421 PIEAVVAPAASKE-EGKIIVTGKLGEIAKEAVQNVSAIIKRYKGEDISRYDIHVQFLQTY 479
Query: 1007 HLHLHVPEGAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEK 1066
EG +G +A I++ TA++S G PI+Q++AMTG +S+ G+VLP+GG
Sbjct: 480 -------EGV---EGDAASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIGG---- 525
Query: 1067 TIALKPLIQQQEQHKSKMFII 1087
P I+ + KM II
Sbjct: 526 ---ATPAIEAAIEAGIKMVII 543
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 689 DGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTIL 748
+G +A I++ TA++S G PI+Q++AMTG +S+ G+VLP+GG AA G+ ++
Sbjct: 483 EGDAASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIGGATPAIEAAIEAGIKMVI 542
Query: 749 MPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHTSER 790
+P+ N+KD L + E + + V +V ++ E + ++
Sbjct: 543 IPKSNEKDVF-LSKDKAEKIQIFPVETIDEVLEIALEESEKK 583
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding
Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2
Length = 96
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C K FS +K H+R H+G++PYKC + C+ A + S H+R H+ E+P++C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKC- 67
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
+ C + + S L H+R+HT +
Sbjct: 68 -QICPYASRNSSQLTVHLRSHTGD 90
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 829 CDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCP 888
C K F+ K HMR H+G KPY C+ C + SSL KH +HSD RPF C CP
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDERPFKCQICP 71
Query: 889 RSYRQLCTLNVHKKTN 904
+ R L VH +++
Sbjct: 72 YASRNSSQLTVHLRSH 87
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 788 SERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHS 847
S P C V G + F+ + K H+R HTG KPY C CD + A +++ H+RIHS
Sbjct: 5 SSGPHKCEVCG--KCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHS 60
Query: 848 GEKPYVCQV 856
E+P+ CQ+
Sbjct: 61 DERPFKCQI 69
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGE 819
H+ ERPF C + C + S+ VH+R+HTG+
Sbjct: 59 HSDERPFKCQI--CPYASRNSSQLTVHLRSHTGD 90
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 56.6 bits (135), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 34/60 (56%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 1219
S IR + C C K + KAH RTHTGEKP+ C+ + C + F S +L +H RTH
Sbjct: 13 SRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
+ ++C GC K++ +++ K H R H+GEKP+ C + C++RF L +H H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
R C GC +++ S+ K H RTHTGEKP+ C GC++ FA + H R H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 48.5 bits (114), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 1189
P C KT+ + H+K H R H+G +P+ C + CE+ F+ H RTH
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTH 816
HT E+PF C GC+R F S+ H RTH
Sbjct: 42 HTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 850 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQLCTLNVHKKTN 904
+ ++C C K + + S L HT H+ +PF C C R + + L+ H++T+
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ IR+H C+H C K++ S L+ H RTHT E
Sbjct: 13 SRIRSHI------CSHPGCGKTYFKSSHLKAHTRTHTGE 45
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 799 CDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRD 858
C R FT S +H RTHT E+PY C C K+F + ++H IHS EKP+ CQ +
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCD--ICHKAFRRQDHLRDHRYIHSKEKPFKCQ--E 78
Query: 859 CQKRFTEYSSLYKHTLVH 876
C K F + +L H +H
Sbjct: 79 CGKGFCQSRTLAVHKTLH 96
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
+K ++C C + F + N H R H+ E+PY C + C K F L H +HS
Sbjct: 15 KKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSK 70
Query: 879 IRPFICDRCPRSYRQLCTLNVHK 901
+PF C C + + Q TL VHK
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHK 93
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+C C + F+ ++++ +H R H+ RPY C + C KAF Q + H H+ EKP++C
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 1198 AHEFCSKSFKTSGDLQKHVRTH 1219
+ C K F S L H H
Sbjct: 77 --QECGKGFCQSRTLAVHKTLH 96
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 749 MPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFE---HTSERPFPCPVLGCDRSFTT 805
+P + KK+F I + HF + Y+L+ HT ERP+ C + C ++F
Sbjct: 10 LPSKTKKEF------ICKFCGRHFT----KSYNLLIHERTHTDERPYTCDI--CHKAFRR 57
Query: 806 SNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
+ + H H+ EKP+ C E G K F + H +H
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECG--KGFCQSRTLAVHKTLH 96
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 1169 VEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
++C + F+ Y+ H RTHT E+PY C + C K+F+ L+ H H+ E
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKE 71
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+K ++C+ C + FT+ +L H H+D RP+ CD C +++R+ L H+ + +E
Sbjct: 15 KKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE 71
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain Repeats
Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 31/107 (28%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCP-----------------------------V 1169
CP C K F S +++KVH R H+G +P++CP
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Query: 1170 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 1216
C++ F + + H+ +HTGE PY+C+ CS+ F DLQ H+
Sbjct: 70 SVCQETFRRRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHM 114
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 794 CPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR---IHSGEK 850
CP C + F + KVH R HTGEKP+ C + G K + N H ++ E+
Sbjct: 10 CPT--CHKKFLSKYYLKVHNRKHTGEKPFECPKCG--KCYFRKENLLEHEARNCMNRSEQ 65
Query: 851 PYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQ 893
+ C V CQ+ F L H + H+ P+ C C + + Q
Sbjct: 66 VFTCSV--CQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQ 106
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 32/94 (34%)
Query: 785 EHTSERPFPCPVLG-----------------------------CDRSFTTSNIRKVHIRT 815
+HT E+PF CP G C +F ++H+ +
Sbjct: 29 KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88
Query: 816 HTGEKPYVCGEAGCDKSFASATNYKNHM-RIHSG 848
HTGE PY C + C + F + ++HM ++HSG
Sbjct: 89 HTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYR 1196
C C K F +H+ H HSG +PY CPV C F + H+R+H G KPY
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 1197 CAHEFCSKSFKTSGDLQKHVR 1217
C + C K F L H++
Sbjct: 68 C--QSCGKGFSRPDHLNGHIK 86
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 776 WRQVYDL---VFEHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGE--KPYVCGEAGCD 830
+R VY L H+ E+P+ CPV C F + H+R+H G KPY+C C
Sbjct: 17 FRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCG 72
Query: 831 KSFASATNYKNHMR-IHSG 848
K F+ + H++ +HSG
Sbjct: 73 KGFSRPDHLNGHIKQVHSG 91
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 829 CDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH--SDIRPFICDR 886
C K F + H HSGEKPY C V C RF + H H S +P+IC
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS 70
Query: 887 CPRSYRQLCTLNVHKKTNH 905
C + + + LN H K H
Sbjct: 71 CGKGFSRPDHLNGHIKQVH 89
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE--KPYVCQVRDCQKRFTEYSSL 869
H +H+GEKPY C C F H+R H G KPY+CQ C K F+ L
Sbjct: 26 HKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ--SCGKGFSRPDHL 81
Query: 870 YKH-TLVHS 877
H VHS
Sbjct: 82 NGHIKQVHS 90
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 54.7 bits (130), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHS 847
E+P+ C + C ++F+ S+I H R HTGEKPY C E C K+F+ + NH RIH+
Sbjct: 12 EKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHT 66
Score = 53.1 bits (126), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
EKPY C E C K+F+ ++ H R+H+GEKPY C +C K F++ S L H +H+
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLINHQRIHT 66
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
+PY C VE C KAFS H R HTGEKPY+C C K+F + L H R HT
Sbjct: 13 KPYGC-VE-CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHT 66
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 1190
C EC K FS + + H R+H+G +PYKC +E C KAFS H R HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKC-LE-CGKAFSQNSGLINHQRIHT 66
Score = 39.3 bits (90), Expect = 0.015, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRES 908
EKPY C +C K F+ S L +H VH+ +P+ C C +++ Q L NH+
Sbjct: 12 EKPYGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL-----INHQRI 64
Query: 909 KNKKPSN 915
PS+
Sbjct: 65 HTSGPSS 71
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY C C K+F S L +H R HT E
Sbjct: 12 EKPYGCVE--CGKAFSRSSILVQHQRVHTGE 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain In
Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+C CK+++ ++ H IHS + Y C YCEK F R H HTGE+ Y+C
Sbjct: 24 ICIVCKRSYVCLTSLRRHFNIHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 1198 AHEFCSKSFKTSGDLQKHVRT 1218
C KSF + H+++
Sbjct: 82 LA--CGKSFINYQFMSSHIKS 100
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 818 GEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
G Y+C C +S+ T+ + H IHS EK Y C R C+K F KH + H+
Sbjct: 19 GRVYYIC--IVCKRSYVCLTSLRRHFNIHSWEKKYPC--RYCEKVFPLAEYRTKHEIHHT 74
Query: 878 DIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
R + C C +S+ ++ H K+ H +
Sbjct: 75 GERRYQCLACGKSFINYQFMSSHIKSVHSQ 104
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 799 CDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRD 858
C RS+ + H H+ EK Y C C+K F A H H+GE+ Y C
Sbjct: 28 CKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQCLA-- 83
Query: 859 CQKRFTEYSSLYKH-TLVHS 877
C K F Y + H VHS
Sbjct: 84 CGKSFINYQFMSSHIKSVHS 103
Score = 38.1 bits (87), Expect = 0.028, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR- 844
H+ E+ +PC C++ F + R H HTGE+ Y C C KSF + +H++
Sbjct: 45 HSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQC--LACGKSFINYQFMSSHIKS 100
Query: 845 IHS 847
+HS
Sbjct: 101 VHS 103
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 775 EWRQVYDLVFEHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFA 834
EW+Q R + C C +SF+ S+ H RTHTGEKPY C E C K+F
Sbjct: 10 EWQQ--------RERRRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFI 57
Query: 835 SATNYKNHMRIHSGEKP 851
++ H R+H+G P
Sbjct: 58 QRSHLIGHHRVHTGSGP 74
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
R YKC + C K+FS H RTHTGEKPY+C + C K+F L H R HT
Sbjct: 17 RRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGS 72
Query: 1223 FQMSG 1227
SG
Sbjct: 73 GPSSG 77
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
C EC K+FS + + H R H+G +PYKC + C KAF + H R HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
Y C E C KSF+ +++ H R H+GEKPY C +C K F + S L H VH+ P
Sbjct: 19 YKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.0 bits (84), Expect = 0.066, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 852 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNK 911
Y C +C K F+ S L KH H+ +P+ CD C +++ Q L H HR
Sbjct: 19 YKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH----HRVHTGS 72
Query: 912 KPSN 915
PS+
Sbjct: 73 GPSS 76
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+PYKC + C+ +F + + +H HTGEKPYRC C F +L+ H R H+ E
Sbjct: 16 KPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGE 71
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
++P+ C C SF H HTGEKPY C C F N K H RIHSG
Sbjct: 15 DKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSG 70
Query: 849 EKP 851
EKP
Sbjct: 71 EKP 73
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
+KPY C C SF N +H +H+GEKPY C + C +F ++L HT +HS
Sbjct: 15 DKPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSG 70
Query: 879 IRP 881
+P
Sbjct: 71 EKP 73
Score = 47.0 bits (110), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
C C+ +F ++ H +H+G +PY+C + C F+ + K H R H+GEKP
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+KPY C CQ F +L H VH+ +P+ C+ C + + L H + + E
Sbjct: 15 DKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
HT E+P+ C + C F K H R H+GEKP
Sbjct: 40 HTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEKP 73
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 1189
C C K F S +++ +HLR H+G +PYKC E+CE A + + S + H+ H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERH 55
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 1171 YCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 1219
YC K F + Y H+RTHTGEKPY+C EFC + L+ H+ H
Sbjct: 9 YCGKFFRSNYYLNIHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERH 55
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 799 CDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
C + F ++ +H+RTHTGEKPY C C+ + A T+ + H+ H
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKC--EFCEYAAAQKTSLRYHLERH 55
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 829 CDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTL 874
C K F S H+R H+GEKPY C+ F EY++ K +L
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKCE-------FCEYAAAQKTSL 48
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+ C C ++F N KVH +HT + PY C GCDK F+ + K H ++H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--- 58
Query: 852 YVCQVRD 858
Y C+ D
Sbjct: 59 YPCKKDD 65
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 1219
Y C E C KAF K H +HT + PY C HE C K F L++H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 1142 CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH-E 1200
C K F + +KVH H+ PY+CP E C+K FS K H + H G Y C +
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDD 65
Query: 1201 FCSKSFKTSGDLQKHV 1216
CS KT KHV
Sbjct: 66 SCSFVGKTWTLYLKHV 81
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
YVC C K+F K H H+ + PY C C KRF+ S L +H VH+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 784 FEHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTG 818
F HT + P+ CP GCD+ F+ + K H + H G
Sbjct: 24 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 852 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVHKKTN 904
YVC +C K F +++ L H H+ P+ C + C + + L H+K +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+ C C ++F N KVH +HT + PY C GCDK F+ + K H ++H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--- 58
Query: 852 YVCQVRD 858
Y C+ D
Sbjct: 59 YPCKKDD 65
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 27/55 (49%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 1219
Y C E C KAF K H +HT + PY C HE C K F L++H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 1142 CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH-E 1200
C K F + +KVH H+ PY+CP E C+K FS K H + H G Y C +
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDD 65
Query: 1201 FCSKSFKTSGDLQKHV-RTHTD 1221
CS KT KHV H D
Sbjct: 66 SCSFVGKTWTLYLKHVAECHQD 87
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
YVC C K+F K H H+ + PY C C KRF+ S L +H VH+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 37.4 bits (85), Expect = 0.055, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 784 FEHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTG 818
F HT + P+ CP GCD+ F+ + K H + H G
Sbjct: 24 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 852 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVHKKTN 904
YVC +C K F +++ L H H+ P+ C + C + + L H+K +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 793 PCPVLGCDRSFTTSNIRKVHIR-THTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
PC GC R F+ H + H +K + C E C KSF + K HM++HS +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD 68
Query: 852 YVCQ 855
Y+C+
Sbjct: 69 YICE 72
Score = 37.0 bits (84), Expect = 0.068, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 784 FEHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAG 828
++H ++ F CP C +SF K H++ H+ + Y+C +G
Sbjct: 31 YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 1140 PECKKTFSSAHHMKVHLRI-HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
P C + FS+ ++ H + H + + CP C K+F+ + K H++ H+ + Y C
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC- 71
Query: 1199 HEFCSKS 1205
EF S
Sbjct: 72 -EFSGPS 77
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 1160 SGIRPYKCPVEYCEKAFST-QYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
SG C C + FS QY H +K + C C KSF L++H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 1219 HTD 1221
H+D
Sbjct: 63 HSD 65
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 1139 CPE--CKKTFSSAHHMKVHLRIHSGIRPYKC 1167
CPE C K+F+ H+K H+++HS R Y C
Sbjct: 41 CPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 354 DDHYGMEDVKKRILEFIAVSQ------LK-GTTQGKILCFYGPPGVGKTSIAKSIARALN 406
+D G+EDVK+ + E + LK G T K + FYGPPG GKT +AK+IA
Sbjct: 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74
Query: 407 REYFRFSVGGMSDVAEIKGHR--RTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGKG 463
+ IKG + G V + K + P VL DE+D I K
Sbjct: 75 ANFI-----------SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 123
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 354 DDHYGMEDVKKRILEFIAVSQ------LK-GTTQGKILCFYGPPGVGKTSIAKSIARALN 406
+D G+EDVK+ + E + LK G T K + FYGPPG GKT +AK+IA
Sbjct: 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
Query: 407 REYFRFSVGGMSDVAEIKGHR--RTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGKG 463
+ IKG + G V + K + P VL DE+D I K
Sbjct: 537 ANFI-----------SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G + + YGPPG GKT IA+++A F F + G ++++ G +
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES------- 284
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIG 461
+ + ++ + P ++ IDE+D I
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
+PF C + C R+F+ S+ HIRTHTGEKP+ C C + FA + K H I
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDI 53
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKH 1215
++P++C + C + FS HIRTHTGEKP+ C + C + F S + ++H
Sbjct: 1 MKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRH 50
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAH 1185
C C + FS + H+ H+R H+G +P+ C + C + F+ RK H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRH 50
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKH 872
KP+ C C ++F+ + + H+R H+GEKP+ C + C ++F +H
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRH 50
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 850 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSY 891
KP+ C++ C + F+ L H H+ +PF CD C R +
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 354 DDHYGMEDVKKRILEFIAVSQ------LK-GTTQGKILCFYGPPGVGKTSIAKSIARALN 406
+D G+EDVK+ + E + LK G T K + FYGPPG GKT +AK+IA
Sbjct: 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536
Query: 407 REYFRFSVGGMSDVAEIKGHR--RTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGKG 463
+ IKG + G V + K + P VL DE+D I K
Sbjct: 537 ANFI-----------SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA 585
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G + + YGPPG GKT IA+++A F F + G ++++ G +
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES------- 284
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIG 461
+ + ++ + P ++ IDE+D I
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 355 DHYGMEDVKKRILE---FIAVSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNRE 408
D G E+ K+ ++E F+ + KI + GPPG GKT +AK++A +
Sbjct: 12 DMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP 71
Query: 409 YFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGK 462
+ FS+GG S + +VG +V + K + P ++ IDE+D IGK
Sbjct: 72 F--FSMGGSSFI-------EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK 117
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G K + GPPG GKT +A+++A N +F S SD E+ +VG
Sbjct: 45 GARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS---GSDFVEL------FVGVGAA 95
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIGK 462
+V + K P +V IDE+D +G+
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDEIDAVGR 122
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY CGE C K+FA N H RIH+GEKP
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.33, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPYRC C K+F +L +H R HT E
Sbjct: 10 EKPYRCGE--CGKAFAQKANLTQHQRIHTGE 38
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C C KAF+ + + H R HTGEKP
Sbjct: 11 KPYRC--GECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G K + GPPG G T +A+++A N +F S SD E+ +VG
Sbjct: 45 GARMPKGILLVGPPGTGATLLARAVAGEANVPFFHIS---GSDFVEL------FVGVGAA 95
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIGK 462
+V + K P +V IDE+D +G+
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDEIDAVGR 122
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKV 438
T + + +GPPG GK+ +AK++A N F FS+ V++ G V +
Sbjct: 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF-FSISSSDLVSKWLGESEKLV----KNL 219
Query: 439 IQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRV 498
Q ++ K ++ IDE+D + S + + A + FL V VD +
Sbjct: 220 FQLARENKPS--IIFIDEIDSLCGSRSENESEAARRI-----KTEFLVQMQGVGVDNDGI 272
Query: 499 LFICTANVIDTIPEPLRDRME 519
L + N+ + +R R E
Sbjct: 273 LVLGATNIPWVLDSAIRRRFE 293
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 355 DHYGMEDVKKRILEFIAVSQLKGTTQ---GKI---LCFYGPPGVGKTSIAKSIARALNRE 408
D G ++ K+ + E + + Q GKI + GPPG GKT +AK+IA
Sbjct: 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 72
Query: 409 YFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGK 462
+F S SD E+ +VG +V ++ K P ++ IDE+D +G+
Sbjct: 73 FFTIS---GSDFVEM------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 118
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 93/236 (39%), Gaps = 31/236 (13%)
Query: 355 DHYGMEDVKKRILEFIAVSQLK--------GTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D GM + K + EF V LK G K GPPG GKT +AK++A
Sbjct: 7 DVAGMHEAKLEVREF--VDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ 64
Query: 407 REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYS 465
+ ++ G V I G +GA +V K+ + P +V IDE+D +GK S
Sbjct: 65 VPF--LAMAGAEFVEVIGG-----LGA--ARVRSLFKEARARAPCIVYIDEIDAVGKKRS 115
Query: 466 GDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLR-----DRMEM 520
+ + EQ N L +D V+ + + N D + L DR
Sbjct: 116 TTMSG--FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVF 173
Query: 521 IDVSGYVAEEKVAIAAQYLIPQAMKESG--LSPEQITLEPSAIQVLIKNYCRESGV 574
ID+ +E+ I Q+L + +S S L P I N C E+ +
Sbjct: 174 IDLP--TLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAAL 227
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae, Nmr,
25 Structures
Length = 60
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 1170 EYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR 1217
E C +AF+ Q K H R+HT EKPY C C+++F L +H +
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQ 51
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNH-MRIHSG 848
F C V C R+F K H R+HT EKPY CG C+++F H +IHSG
Sbjct: 3 FVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSG 56
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 829 CDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTL-VHS 877
C ++FA + K H R H+ EKPY C + C + FT L +H +HS
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHS 55
Score = 38.9 bits (89), Expect = 0.019, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFS 1177
VC C + F+ H+K H R H+ +PY C + C +AF+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFT 41
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 852 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 905
+VC+V C + F L +H H++ +P+ C C R++ + L H + H
Sbjct: 3 FVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKV 438
T + + +GPPG GK+ +AK++A N F FS+ V++ G V +
Sbjct: 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTF-FSISSSDLVSKWLGESEKLV----KNL 97
Query: 439 IQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRV 498
Q ++ K ++ IDE+D + S + + A + FL V VD +
Sbjct: 98 FQLARENKPS--IIFIDEIDSLCGSRSENESEAARRI-----KTEFLVQMQGVGVDNDGI 150
Query: 499 LFICTANVIDTIPEPLRDRME 519
L + N+ + +R R E
Sbjct: 151 LVLGATNIPWVLDSAIRRRFE 171
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein Mbp-1
Length = 57
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 1183 KAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
K HIRTHT +PY C +C+ SFKT G+L KH+++
Sbjct: 18 KKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKS 51
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 852 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
Y+C+ +C R + S L KH H+D+RP+ C C S++ L H K+
Sbjct: 2 YICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT 1188
+C EC +K H+R H+ +RPY C YC +F T+ + H+++
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKS 51
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 810 KVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR 844
K HIRTHT +PY C C+ SF + N HM+
Sbjct: 18 KKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMK 50
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 372 VSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYV 431
+ Q G K + YGPPG GKT +AK++A + + G+ D Y+
Sbjct: 206 IFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD---------KYI 256
Query: 432 GAMPGKVIQCMKKTKTENP-LVLIDEVDKIG-----KGYSGDP--ASALLEML 476
G + + K P ++ +DEVD IG +G S D L+E+L
Sbjct: 257 GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELL 309
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 111/272 (40%), Gaps = 52/272 (19%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQC 441
K + GP GVGKT IA+ +A+ N + + ++V YVG +I+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG--------YVGKEVDSIIRD 102
Query: 442 MKKTK-------TENPLVLIDEVDKIGKG--YSGDPASA------LLEMLDPEQNANFLD 486
+ + +N +V IDE+DKI K YSG S LL ++ E +
Sbjct: 103 LTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV--EGSTVSTK 160
Query: 487 HYLDVPVDLSRVLFICT-----ANVIDTIPE-----PLRDRMEMIDVSGY---VAEEKVA 533
H + V +LFI + A D IPE P+R + + + + + E +
Sbjct: 161 HGM---VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHAS 217
Query: 534 IAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRES------GVRNLQKHIEKVTRK 587
+ QY M G++ I A++ + + R + G R L +E++ K
Sbjct: 218 LTEQY--KALMATEGVN---IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDK 272
Query: 588 VALTIVKKESDKVTVTNDNLSDFVGKPIFSHD 619
++ + V + ++D +G+ + + D
Sbjct: 273 ISFSASDMNGQTVNIDAAYVADALGEVVENED 304
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQC 441
K + GPPGVGKT +A+++A F SD E+ +VG +V
Sbjct: 65 KGVLLVGPPGVGKTHLARAVA---GEARVPFITASGSDFVEM------FVGVGAARVRDL 115
Query: 442 MKKTKTENP-LVLIDEVDKIGK 462
+ K P +V IDE+D +G+
Sbjct: 116 FETAKRHAPCIVFIDEIDAVGR 137
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQC 441
K + GPPGVGKT +A+++A F SD E+ +VG +V
Sbjct: 74 KGVLLVGPPGVGKTHLARAVA---GEARVPFITASGSDFVEM------FVGVGAARVRDL 124
Query: 442 MKKTKTENP-LVLIDEVDKIGK 462
+ K P +V IDE+D +G+
Sbjct: 125 FETAKRHAPCIVFIDEIDAVGR 146
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G Q K + YGPPG GKT +A+++A + ++ R S + + Y+G
Sbjct: 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV---------QKYIGEGSR 228
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIGK-------GYSGDPASALLEMLD 477
V + + P ++ +DE+D IG G + +LE+L+
Sbjct: 229 MVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN 277
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMK 443
+ YGPPG GKT + K++A + + R V G V H+ Y+G P V +
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIR--VNGSEFV-----HK--YLGEGPRMVRDVFR 259
Query: 444 KTKTENP-LVLIDEVDKIG 461
+ P ++ IDEVD I
Sbjct: 260 LARENAPSIIFIDEVDSIA 278
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY+C E C KSF ++ H RIH+GEKP
Sbjct: 10 EKPYICNE--CGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRP 1164
+C EC K+F H+ H RIH+G +P
Sbjct: 14 ICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY+C +C K F + S L +H +H+ +P
Sbjct: 10 EKPYICN--ECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHM-RIHSGE---KPYVCQVRDCQKRFTEYSSL 869
RTHTGEKPY C CDK+F H R H +VC C K FT +++
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTM 63
Query: 870 YKH 872
+H
Sbjct: 64 ARH 66
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTD 1221
RTHTGEKPY C+H C K+F+ L H + + D
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHD 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 693-
723) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
SG++PY C C KAF ++ H+RTHTGEKP
Sbjct: 6 SGVKPYGC--SECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 38.5 bits (88), Expect = 0.025, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+G KPY C E C K+F S + HMR H+GEKP
Sbjct: 6 SGVKPYGCSE--CGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.5 bits (75), Expect = 0.84, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
+P+ C C ++F + + +H+RTHTGEKP
Sbjct: 9 KPYGCS--ECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.5 bits (75), Expect = 0.84, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K F S ++ +H+R H+G +P
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+G KPY C+ C K+F++ L H+RTHT E
Sbjct: 6 SGVKPYGCSE--CGKAFRSKSYLIIHMRTHTGE 36
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 1189
C C KT+ A + H R H G RP CP C K F Q H++ H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCP--ECGKCFRDQSEVNRHLKVH 55
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 788 SERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHS 847
SERPF C C +++ ++ H R H G +P C E C K F + H+++H
Sbjct: 1 SERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRDQSEVNRHLKVHQ 56
Query: 848 GEKP 851
KP
Sbjct: 57 -NKP 59
Score = 38.9 bits (89), Expect = 0.020, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+P+ C C K++ A+ H R H G +P C +C K F + S + +H VH +
Sbjct: 2 ERPFFCN--FCGKTYRDASGLSRHRRAHLGYRPRSCP--ECGKCFRDQSEVNRHLKVHQN 57
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RP+ C +C K + H R H G +P C C K F+ ++ +H++ H ++
Sbjct: 3 RPFFC--NFCGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRDQSEVNRHLKVHQNK 58
Score = 37.4 bits (85), Expect = 0.048, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
E+P+ C C K + + S L +H H RP C C + +R +N H K + +
Sbjct: 2 ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT 447
GPPGVGKT +A+++A F SD E+ +VG +V + K
Sbjct: 80 GPPGVGKTHLARAVA---GEARVPFITASGSDFVEM------FVGVGAARVRDLFETAKR 130
Query: 448 ENP-LVLIDEVDKIGK 462
P +V IDE+D +G+
Sbjct: 131 HAPCIVFIDEIDAVGR 146
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 25/184 (13%)
Query: 345 LTQAAKILDDDHYGMEDVKKRILEFIAVS-----QLKGT---TQGKILCFYGPPGVGKTS 396
L++ + +D G+E K+ + E + + KG T G +L YGPPG GK+
Sbjct: 18 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILL--YGPPGTGKSY 75
Query: 397 IAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLID 455
+AK++A N +F S SD+ ++G V Q + P ++ ID
Sbjct: 76 LAKAVATEANSTFFSVS---SSDLVS------KWMGESEKLVKQLFAMARENKPSIIFID 126
Query: 456 EVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLR 515
EVD + G G+ S + E L V D VL + N+ + +R
Sbjct: 127 EVDAL-TGTRGEGESEASRRIKTE----LLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 181
Query: 516 DRME 519
R E
Sbjct: 182 RRFE 185
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 40.0 bits (92), Expect = 0.009, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT 447
GPPGVGKT +A+++A F SD E+ +VG +V + K
Sbjct: 56 GPPGVGKTHLARAVA---GEARVPFITASGSDFVEM------FVGVGAARVRDLFETAKR 106
Query: 448 ENP-LVLIDEVDKIGK 462
P +V IDE+D +G+
Sbjct: 107 HAPCIVFIDEIDAVGR 122
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F+S + HMR HSGEKP
Sbjct: 10 EKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.8 bits (81), Expect = 0.17, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K FSS ++ +H+R HSG +P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY C C KAFS++ H+RTH+GEKP
Sbjct: 11 KPYGC--SECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+P+ C C ++F++ + +H+RTH+GEKP
Sbjct: 10 EKPYGCS--ECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 30.4 bits (67), Expect = 5.7, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY C+ C K+F + L H+RTH+ E
Sbjct: 10 EKPYGCSE--CGKAFSSKSYLIIHMRTHSGE 38
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKG------TTQGKILCFYGPPGVGKTSIAKSIARALNR 407
DD G + K+ + E + + L+ + L +GPPG GKT +AK++A N
Sbjct: 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174
Query: 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKI 460
+F S ++ YVG V + P ++ ID+VD +
Sbjct: 175 TFFNISAASLTS---------KYVGEGEKLVRALFAVARELQPSIIFIDQVDSL 219
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMK 443
+ YGPPG GK+ +AK++A N +F S SD+ ++G V Q
Sbjct: 87 ILLYGPPGTGKSYLAKAVATEANSTFFSVS---SSDLVS------KWMGESEKLVKQLFA 137
Query: 444 KTKTENP-LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502
+ P ++ ID+VD + G G+ S + E L V D VL +
Sbjct: 138 MARENKPSIIFIDQVDAL-TGTRGEGESEASRRIKTE----LLVQMNGVGNDSQGVLVLG 192
Query: 503 TANVIDTIPEPLRDRME 519
N+ + +R R E
Sbjct: 193 ATNIPWQLDSAIRRRFE 209
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
+GEKPYVC E C K+F +++ H RIH+GE
Sbjct: 6 SGEKPYVCTE--CGKAFIRKSHFITHERIHTGE 36
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
SGEKPYVC +C K F S H +H+
Sbjct: 6 SGEKPYVCT--ECGKAFIRKSHFITHERIHT 34
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.011, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C KSF A+ H R+HSGEKP
Sbjct: 10 EKPYNCKE--CGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY C C KSF+ + L KH R H+ E
Sbjct: 10 EKPYNCKE--CGKSFRWASCLLKHQRVHSGE 38
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C ++C K F S L KH VHS +P
Sbjct: 10 EKPYNC--KECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR 411
DD G E + KR+ ++ + L F GPPGVGKT+ A ++AR L E +R
Sbjct: 25 DDIVGQEHIVKRLKHYVKTGSMPH------LLFAGPPGVGKTTAALALARELFGENWR 76
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 354 DDHYGMEDVKKRILEFIA--------VSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL 405
+D G+E K I E + + L+G +G +L +GPPG GKT I K IA
Sbjct: 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILL--FGPPGTGKTLIGKCIASQS 141
Query: 406 NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKI 460
+F S ++ +VG V + + P V+ IDE+D +
Sbjct: 142 GATFFSISASSLTS---------KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 188
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C E C KSF+ ++ H RIH+GEKP
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.46, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C C +SF+ S+ H R HTGEKP
Sbjct: 10 EKPFECA--ECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.90, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKP+ CA C KSF S L H R HT E
Sbjct: 10 EKPFECAE--CGKSFSISSQLATHQRIHTGE 38
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K+FS + + H RIH+G +P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P++C C K+FS H R HTGEKP
Sbjct: 11 KPFECA--ECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+G+KP VC E C K+F ++ H RIHSGEKP
Sbjct: 6 SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGEKP 38
Score = 33.9 bits (76), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
SG+KP VC +C K F + S L KH +HS +P
Sbjct: 6 SGKKPLVCN--ECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRP 1164
VC EC KTF + + H RIHSG +P
Sbjct: 12 VCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G K + YGPPG GKT +AK++A N + R V G V + ++G
Sbjct: 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNATFIR--VVGSELV-------KKFIGEGAS 97
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIG 461
V K K + P ++ IDE+D I
Sbjct: 98 LVKDIFKLAKEKAPSIIFIDEIDAIA 123
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K F ++ NH RIH+GEKP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K F+ H+ H RIH+G +P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PYKC C K F+ H R HTGEKP
Sbjct: 11 KPYKC--NECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K FT+ S L H +H+ +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 15/137 (10%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMK 443
+ YGPPG GK+ +AK++A N +F S SD+ ++G V Q
Sbjct: 72 ILLYGPPGTGKSYLAKAVATEANSTFFSVS---SSDLVS------KWMGESEKLVKQLFA 122
Query: 444 KTKTENP-LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502
+ P ++ ID+VD + G G+ S + E L V D VL +
Sbjct: 123 MARENKPSIIFIDQVDAL-TGTRGEGESEASRRIKTE----LLVQMNGVGNDSQGVLVLG 177
Query: 503 TANVIDTIPEPLRDRME 519
N+ + +R R E
Sbjct: 178 ATNIPWQLDSAIRRRFE 194
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 385 CFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKK 444
YGPPG GKT +A++ A N + + + + + Y+G V
Sbjct: 219 LMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV---------QMYIGEGAKLVRDAFAL 269
Query: 445 TKTENP-LVLIDEVDKIG 461
K + P ++ IDE+D IG
Sbjct: 270 AKEKAPTIIFIDELDAIG 287
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F+ + H RIH+GEKP
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PYKC C KAFS H R HTGEKP
Sbjct: 11 KPYKC--NECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY+C C K+F + L +H R HT E
Sbjct: 10 EKPYKCNE--CGKAFSQTSKLARHQRIHTGE 38
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K F++ S L +H +H+ +P
Sbjct: 10 EKPYKCN--ECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 38.9 bits (89), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G K + YG PG GKT +AK++A + + R VG S++ + Y+G P
Sbjct: 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI-VG--SELIQ------KYLGDGPR 262
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIG-KGYSGDPAS------ALLEMLDPEQNANFLDHY 488
Q K P +V IDE+D IG K Y + +LE+L N LD +
Sbjct: 263 LCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL------NQLDGF 316
Query: 489 LDVPVDLSRVLFICTANVIDTI 510
D V I N I+T+
Sbjct: 317 ----DDRGDVKVIMATNKIETL 334
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 25/184 (13%)
Query: 345 LTQAAKILDDDHYGMEDVKKRILEFIAVS-----QLKGT---TQGKILCFYGPPGVGKTS 396
L++ + +D G+E K+ + E + + KG T G +L YGPPG GK+
Sbjct: 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILL--YGPPGTGKSY 66
Query: 397 IAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLID 455
+AK++A N +F S SD+ ++G V Q + P ++ ID
Sbjct: 67 LAKAVATEANSTFFSVS---SSDLVS------KWMGESEKLVKQLFAMARENKPSIIFID 117
Query: 456 EVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLR 515
+VD + G G+ S + E L V D VL + N+ + +R
Sbjct: 118 QVDAL-TGTRGEGESEASRRIKTE----LLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 172
Query: 516 DRME 519
R E
Sbjct: 173 RRFE 176
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 32/142 (22%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMK 443
+ GP G GKT +A+++AR L+ + M+D + YVG +IQ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFT------MADATTLT--EAGYVGEDVENIIQKLL 105
Query: 444 K------TKTENPLVLIDEVDKIGKGYSGDPA-----------SALLEMLD------PEQ 480
+ K + +V ID++DKI + S +P+ ALL++++ P Q
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKISR-KSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164
Query: 481 NANFLDHYLDVPVDLSRVLFIC 502
+ VD S++LFIC
Sbjct: 165 GGRKHPQQEFLQVDTSKILFIC 186
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F+ T+ H R+H+GEKP
Sbjct: 10 EKPYECKE--CGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K FS H+ H R+H+G +P
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C + C KAFS H R HTGEKP
Sbjct: 11 KPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C ++C K F++ + L +H VH+ +P
Sbjct: 10 EKPYEC--KECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 38.5 bits (88), Expect = 0.023, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+P+ C +C K F S +LQ+H RTHT E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 36.6 bits (83), Expect = 0.093, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
RP+ C YC K F+ + H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
RPF C C + FT S+ + H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
+P++C + C K F + + H R H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 32/142 (22%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMK 443
+ GP G GKT +A+++AR L+ + M+D + YVG +IQ +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFT------MADATTLT--EAGYVGEDVENIIQKLL 105
Query: 444 K------TKTENPLVLIDEVDKIGKGYSGDPA-----------SALLEMLD------PEQ 480
+ K + +V ID++DKI + S +P+ ALL++++ P Q
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKISR-KSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164
Query: 481 NANFLDHYLDVPVDLSRVLFIC 502
+ VD S++LFIC
Sbjct: 165 GGRKHPQQEFLQVDTSKILFIC 186
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKV----- 438
F GP GVGKT + +++AL E RF MS+ E R +GA PG V
Sbjct: 491 FLFAGPTGVGKTEVTVQLSKALGIELLRFD---MSEYMERHTVSR-LIGAPPGYVGFDQG 546
Query: 439 -IQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSR 497
+ K + ++L+DE++K D + LL+++D N D+ D
Sbjct: 547 GLLTDAVIKHPHAVLLLDEIEK----AHPDVFNILLQVMD---NGTLTDNN-GRKADFRN 598
Query: 498 VLFICTAN 505
V+ + T N
Sbjct: 599 VVLVMTTN 606
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.032, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPYVC C K+F + H RIH+GEKP
Sbjct: 10 EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.29, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY C ++C K+F S +L +H R HT E
Sbjct: 10 EKPYVC--DYCGKAFGLSAELVRHQRIHTGE 38
Score = 35.0 bits (79), Expect = 0.29, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY C +YC KAF H R HTGEKP
Sbjct: 11 KPYVC--DYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 31/165 (18%)
Query: 378 TTQGKI--LCFYGP-PGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAM 434
T++GKI + + P PG GKT++AK++ +N + F G + ++G + A
Sbjct: 42 TSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM-FVNGSDCKIDFVRGPLTNFASA- 99
Query: 435 PGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD 494
+++IDE D+ G S + +E
Sbjct: 100 --------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS----------------- 134
Query: 495 LSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYL 539
S I TAN ID I +PL+ R +I E+K+ + Q +
Sbjct: 135 -SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMI 178
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D+ G E+VKK++ + ++++G +L GPPG+GKT++A IA L
Sbjct: 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
+GEKPYVC E C K+F ++ H R+H+GE
Sbjct: 6 SGEKPYVCQE--CGKAFTQSSCLSIHRRVHTGE 36
Score = 37.4 bits (85), Expect = 0.053, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
SGEKPYVCQ +C K FT+ S L H VH+
Sbjct: 6 SGEKPYVCQ--ECGKAFTQSSCLSIHRRVHT 34
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+GEKPY C C K+F S L H R HT E
Sbjct: 6 SGEKPYVCQE--CGKAFTQSSCLSIHRRVHTGE 36
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGE 819
+ E+P+ C C ++FT S+ +H R HTGE
Sbjct: 6 SGEKPYVCQ--ECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSG 1161
VC EC K F+ + + +H R+H+G
Sbjct: 12 VCQECGKAFTQSSCLSIHRRVHTG 35
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 1192
SG +PY C + C KAF+ H R HTGE
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIHRRVHTGE 36
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D+ G E+VKK++ + ++++G +L GPPG+GKT++A IA L
Sbjct: 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D+ G E+VKK++ + ++++G +L GPPG+GKT++A IA L
Sbjct: 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F +N H +IH+GEKP
Sbjct: 10 EKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K FT+ S+L+ H +H+ +P
Sbjct: 10 EKPYRCA--ECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPYRCA C K+F +L H + HT E
Sbjct: 10 EKPYRCAE--CGKAFTDRSNLFTHQKIHTGE 38
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D+ G E+VKK++ + ++++G +L GPPG+GKT++A IA L
Sbjct: 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D+ G E+VKK++ + ++++G +L GPPG+GKT++A IA L
Sbjct: 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.7 bits (86), Expect = 0.042, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 344 DLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIAR 403
DL K LD+ + G E +K+++ ++ ++ + +L F GPPG+GKT++A IA
Sbjct: 3 DLALRPKTLDE-YIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAH 60
Query: 404 ALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGK 462
L R + G + PG + + + E ++ IDE+ ++ +
Sbjct: 61 ELGVN-LRVTSGPAIE--------------KPGDLAAILANSLEEGDILFIDEIHRLSR 104
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.7 bits (86), Expect = 0.043, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 344 DLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIAR 403
DL K LD+ + G E +K+++ ++ ++ + +L F GPPG+GKT++A IA
Sbjct: 3 DLALRPKTLDE-YIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAH 60
Query: 404 ALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGK 462
L R + G + PG + + + E ++ IDE+ ++ +
Sbjct: 61 ELGVN-LRVTSGPAIE--------------KPGDLAAILANSLEEGDILFIDEIHRLSR 104
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.7 bits (86), Expect = 0.043, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 344 DLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIAR 403
DL K LD+ + G E +K+++ ++ ++ + +L F GPPG+GKT++A IA
Sbjct: 3 DLALRPKTLDE-YIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAH 60
Query: 404 ALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGK 462
L R + G + PG + + + E ++ IDE+ ++ +
Sbjct: 61 ELGVN-LRVTSGPAIE--------------KPGDLAAILANSLEEGDILFIDEIHRLSR 104
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKI--LCFYGPPGVGKTSIAKSIARAL 405
D+ YG +V + +F+ +GK+ L FYGPPG GKTS ++AR +
Sbjct: 25 DEVYGQNEVITTVRKFV--------DEGKLPHLLFYGPPGTGKTSTIVALAREI 70
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ CGE C KS+ + H R+H+GEKP
Sbjct: 10 EKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.057, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C E C K+F + +H+RIH+GEKP
Sbjct: 10 EKPFKCKE--CGKAFRQNIHLASHLRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P+KC + C KAF +H+R HTGEKP
Sbjct: 11 KPFKC--KECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.60, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K F H+ HLRIH+G +P
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKP++C C K+F+ + L H+R HT E
Sbjct: 10 EKPFKCKE--CGKAFRQNIHLASHLRIHTGE 38
Score = 30.4 bits (67), Expect = 5.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C C ++F + H+R HTGEKP
Sbjct: 10 EKPFKCK--ECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 37.0 bits (84), Expect = 0.063, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
KPY C H C + F G LQ+HVR HT E
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGE 29
Score = 34.3 bits (77), Expect = 0.41, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
KPYVC C + FA + H+RIH+GEK
Sbjct: 2 KPYVC--IHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
++PY C +C++ F+ + + H+R HTGEK
Sbjct: 1 MKPYVCI--HCQRQFADPGALQRHVRIHTGEK 30
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.066, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
T EKP+ C CDKSF + +H IH+GEKP
Sbjct: 8 TAEKPFRCDT--CDKSFRQRSALNSHRMIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.39, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
T+E+PF C CD+SF + H HTGEKP
Sbjct: 8 TAEKPFRCDT--CDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 880 RPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 915
+PF CD C +S+RQ LN H+ H K PS+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMI-HTGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
T EKP+RC + C KSF+ L H HT E
Sbjct: 8 TAEKPFRC--DTCDKSFRQRSALNSHRMIHTGE 38
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P++C + C+K+F + + +H HTGEKP
Sbjct: 11 KPFRC--DTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D+ G E+VKK++ + ++++G +L GPPG+G+T++A IA L
Sbjct: 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGRTTLAHIIASELQ 76
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 551-
583) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.073, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 1164 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
PY+C C KAFS +Y +H RTH GEKP
Sbjct: 12 PYEC--HECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.1 bits (74), Expect = 0.92, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
E PY C E C K+F+ +H R H+GEKP
Sbjct: 10 ENPYECHE--CGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 36.6 bits (83), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 45/159 (28%)
Query: 372 VSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS-------DVA 421
+ +LKG + K L F GPPG GKT+ A ++AR L E +R + M+ DV
Sbjct: 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV 85
Query: 422 --EIKGHRRTY-VGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDP 478
+IK RT +G P K+I +DE D + + D +AL ++
Sbjct: 86 RHKIKEFARTAPIGGAPFKII-------------FLDEADAL----TADAQAALRRTMEM 128
Query: 479 EQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDR 517
+ FI + N + I EP++ R
Sbjct: 129 YSKS---------------CRFILSCNYVSRIIEPIQSR 152
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 36.6 bits (83), Expect = 0.093, Method: Composition-based stats.
Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 59/263 (22%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413
D + G E +KK + FIA ++ + IL F GP G+GKT++A I+
Sbjct: 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHIL-FSGPAGLGKTTLANIISY---------- 77
Query: 414 VGGMSDVAEIKGHRRTYVGAMPGKV--IQCMKKTKTENPLVLIDEVDKIGKGYSGDPASA 471
E + +T K + + +E ++ IDE+ ++ + A
Sbjct: 78 --------EXSANIKTTAAPXIEKSGDLAAILTNLSEGDILFIDEIHRL--------SPA 121
Query: 472 LLEMLDPEQNANFLDHYL-------DVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVS 524
+ E+L P LD + + +DL + I + PLRDR
Sbjct: 122 IEEVLYPAXEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGXLSNPLRDRF------ 175
Query: 525 GYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKV 584
Q+ + + K+S L+ + L+ +A++ + C E + K +
Sbjct: 176 ----------GXQFRL-EFYKDSELA---LILQKAALK--LNKTCEEKAALEIAKR-SRS 218
Query: 585 TRKVALTIVKKESDKVTVTNDNL 607
T ++AL ++K+ D V ++ +
Sbjct: 219 TPRIALRLLKRVRDFADVNDEEI 241
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F + + H RIH+GEKP
Sbjct: 10 EKPYNCEE--CGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY C E C K+F LQ+H R HT E
Sbjct: 10 EKPYNC--EECGKAFIHDSQLQEHQRIHTGE 38
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY C E C KAF + H R HTGEKP
Sbjct: 11 KPYNC--EECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
KPY C E C K+F+ + H R+H+GEKP
Sbjct: 11 KPYQCNE--CGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C C KAFS H R HTGEKP
Sbjct: 11 KPYQC--NECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F + +N H IH+GEKP
Sbjct: 10 EKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K F +S+L H ++H+ +P
Sbjct: 10 EKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
+G+KPYVC E C K+F + H RIH+GE
Sbjct: 6 SGQKPYVCNE--CGKAFGLKSQLIIHERIHTGE 36
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In Zinc
Finger Protein 32
Length = 41
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQMSG 1227
+GEKPY+C C KSF G L H R HT SG
Sbjct: 6 SGEKPYQCKE--CGKSFSQRGSLAVHERLHTGSGPSSG 41
Score = 35.8 bits (81), Expect = 0.16, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+GEKPY C E C KSF+ + H R+H+G P
Sbjct: 6 SGEKPYQCKE--CGKSFSQRGSLAVHERLHTGSGP 38
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
SG +PY+C + C K+FS + S H R HTG P
Sbjct: 6 SGEKPYQC--KECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
SGEKPY C ++C K F++ SL H +H+ P
Sbjct: 6 SGEKPYQC--KECGKSFSQRGSLAVHERLHTGSGP 38
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K+FS + VH R+H+G P
Sbjct: 13 CKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
E+P+ C E C KSF + + H RIH+GEKP
Sbjct: 10 ERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K+F + H+ H RIH+G +P
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 45/159 (28%)
Query: 372 VSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS-------DVA 421
+ +LKG + K L F GPPG GKT+ A ++AR L E +R + M+ DV
Sbjct: 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV 85
Query: 422 --EIKGHRRTY-VGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDP 478
+IK RT +G P K+I +DE D + + D +AL ++
Sbjct: 86 RHKIKEFARTAPIGGAPFKII-------------FLDEADAL----TADAQAALRRTMEM 128
Query: 479 EQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDR 517
+ FI + N + I EP++ R
Sbjct: 129 YSKS---------------CRFILSCNYVSRIIEPIQSR 152
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
+GEKPY C E C K F+S + H RIH+GEK
Sbjct: 6 SGEKPYGCNE--CGKDFSSKSYLIVHQRIHTGEK 37
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSG 1161
C EC K FSS ++ VH RIH+G
Sbjct: 13 CNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In Zinc
Finger Protein 32
Length = 42
Score = 35.8 bits (81), Expect = 0.14, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQMSG 1227
EKPYRC C K+F G L H+R HT SG
Sbjct: 9 EKPYRCDQ--CGKAFSQKGSLIVHIRVHTGSGPSSG 42
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C + C KAFS + S HIR HTG P
Sbjct: 10 KPYRC--DQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C + C K+F+ + H+R+H+G P
Sbjct: 9 EKPYRCDQ--CGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C +C K FS + VH+R+H+G P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K F ++ NH RIH+G KP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K F+ H+ H RIH+G++P
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K FT+ S L H +H+ ++P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 40/173 (23%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQC-- 441
+ GP G GKT +A+++A+ L+ ++ + + E G+ V + +++Q
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLD---IPIAISDATSLTE-AGYVGEDVENILTRLLQASD 130
Query: 442 MKKTKTENPLVLIDEVDKIG---------KGYSGDPA-SALLEMLD-------------- 477
K + +V IDE+DKI + SG+ ALL++++
Sbjct: 131 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKH 190
Query: 478 PEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEE 530
PE NF + +D S +LFIC A D + E ++ R +V G+ E+
Sbjct: 191 PE--GNF------IQIDTSDILFIC-AGAFDGLAEIIKKRTTQ-NVLGFTQEK 233
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 724-
756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
RPY+C +E C KAF T+ S H R+HTGEKP
Sbjct: 11 RPYEC-IE-CGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
+RP+ C + C ++F T + H R+HTGEKP
Sbjct: 10 QRPYEC--IECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
++PY C E C K+F + ++ H R H+GEKP
Sbjct: 10 QRPYECIE--CGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 415-
447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C ECKKTF+ + + VH RIH+G +P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+K + C E C K+F +++ H RIH+GEKP
Sbjct: 10 KKLFKCNE--CKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 799 CDRSFTTSNIRKVHIRTHTGEKP 821
C ++FT S+ VH R HTGEKP
Sbjct: 18 CKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
E+PY+C C K+F +N H +IH+GEKP
Sbjct: 10 ERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
E+PY+C V C K FT+ S+L KH +H+ +P
Sbjct: 10 ERPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
RPY C V C KAF+ + + H + HTGEKP
Sbjct: 11 RPYICTV--CGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQC 441
K + YGPPG GKT A+++A + + R +G S++ + YVG V +
Sbjct: 244 KGILLYGPPGTGKTLCARAVANRTDATFIRV-IG--SELVQ------KYVGEGARMVREL 294
Query: 442 MKKTKTENP-LVLIDEVDKIGKGYSGDPASA 471
+ +T+ ++ DE+D +G D A
Sbjct: 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGG 325
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.17, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F T+ H RIH+G +P
Sbjct: 10 EKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K F H+ H RIH+G RP
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
EKPY+C+ C K+F L +H R HT
Sbjct: 10 EKPYKCSE--CGKAFHRHTHLNEHRRIHT 36
Score = 29.6 bits (65), Expect = 9.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K F ++ L +H +H+ RP
Sbjct: 10 EKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
SGEKPY C +C K FT S L H VH+ ++P
Sbjct: 6 SGEKPYSCN--ECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+GEKPY C E C K+F + H +H+G KP
Sbjct: 6 SGEKPYSCNE--CGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 35.4 bits (80), Expect = 0.19, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 821 PYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
P C E C K F ++ N K H+RIHSGEK
Sbjct: 2 PLKCRE--CGKQFTTSGNLKRHLRIHSGEK 29
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSG 1161
C EC K F+++ ++K HLRIHSG
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSG 27
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 1194 PYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
P +C C K F TSG+L++H+R H+ E
Sbjct: 2 PLKCRE--CGKQFTTSGNLKRHLRIHSGE 28
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 1164 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
P KC C K F+T + K H+R H+GEK
Sbjct: 2 PLKC--RECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 793 PCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
P C + FTTS K H+R H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 607-
639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P++C C+KAF+T+ + H RTHTGEKP
Sbjct: 11 KPFEC--SECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C E C K+F + +N H R H+GEKP
Sbjct: 10 EKPFECSE--CQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C C ++F T + VH RTHTGEKP
Sbjct: 10 EKPFECSE--CQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKP+ C+ C K+F T +L H RTHT E
Sbjct: 10 EKPFECSE--CQKAFNTKSNLIVHQRTHTGE 38
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC+K F++ ++ VH R H+G +P
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.4 bits (80), Expect = 0.20, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 879
SGEKPYVC DC K FT S L H +H+ +
Sbjct: 6 SGEKPYVCS--DCGKAFTFKSQLIVHQGIHTGV 36
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
+GEKPYVC + C K+F + H IH+G
Sbjct: 6 SGEKPYVCSD--CGKAFTFKSQLIVHQGIHTG 35
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F ++ H R+H+G++P
Sbjct: 10 EKPYKCME--CGKAFGDNSSCTQHQRLHTGQRP 40
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PYKC C KAF S H R HTG++P
Sbjct: 11 KPYKC--MECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKP+ C+ +C KRFT+ S L+ H VH+ +P
Sbjct: 10 EKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C E C K F + +H R+H+GEKP
Sbjct: 10 EKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P+KC E C K F+ +H R HTGEKP
Sbjct: 11 KPFKC--EECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C C + FT ++ H R HTGEKP
Sbjct: 10 EKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
E+ + C + C K F A+N+ H RIH+GEKP
Sbjct: 10 ERGHRCSD--CGKFFLQASNFIQHRRIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY+C E C K+F +N H +IH+ +KP
Sbjct: 10 EKPYICAE--CGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY+C +C K FT S+L KH +H+ +P
Sbjct: 10 EKPYICA--ECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C E C K F ++ +H R+H+GEKP
Sbjct: 10 EKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKP+ C+ +C KRFT+ S L+ H VH+ +P
Sbjct: 10 EKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C C + FT ++ H R HTGEKP
Sbjct: 10 EKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K F+ H+ H R+H+G +P
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P++C E C K F+ +H R HTGEKP
Sbjct: 11 KPFQC--EECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G + + YGPPG GKT IA+++A F F + G ++++ G +
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES------- 284
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIG 461
+ + ++ + P ++ IDE+D I
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G + + YGPPG GKT IA+++A F F + G ++++ G +
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES------- 284
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIG 461
+ + ++ + P ++ IDE+D I
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMK 443
+ YGPPG GKT IA+++A F F + G ++++ G + + + +
Sbjct: 241 ILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES-------NLRKAFE 291
Query: 444 KTKTENP-LVLIDEVDKIG 461
+ + P ++ IDE+D I
Sbjct: 292 EAEKNAPAIIFIDELDAIA 310
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F+ + H R H+GEKP
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+P+ C C ++F+ +I H RTHTGEKP
Sbjct: 10 EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY C C K FS + AH RTHTGEKP
Sbjct: 11 KPYGC--NECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 34.7 bits (78), Expect = 0.31, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C GC F+ + H R HSG KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C GC F+ S+ H R+H+G KP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKP+ C C RF+ L +H HS ++P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
EKP+ C C F S +L +H R+H+
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHS 38
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+KP+ C H C KSF+ G+L H R HT E
Sbjct: 10 QKPFECTH--CGKSFRAKGNLVTHQRIHTGE 38
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
+KP+ C C KSF + N H RIH+GEK
Sbjct: 10 QKPFECTH--CGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
E P++C E C K F TN H +IH+GE+P
Sbjct: 10 ENPFICSE--CGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRP 1164
+C EC K F+ ++ +H +IH+G RP
Sbjct: 14 ICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436
G + + YGPPG GKT IA+++A F F + G ++++ G +
Sbjct: 234 GVKPPRGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESES------- 284
Query: 437 KVIQCMKKTKTENP-LVLIDEVDKIG 461
+ + ++ + P ++ IDE+D I
Sbjct: 285 NLRKAFEEAEKNAPAIIFIDELDAIA 310
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMR-IHSGEKPYVCQV 856
KPY+C C K F+ + H++ +H+ E+P+ CQV
Sbjct: 11 KPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 33.9 bits (76), Expect = 0.65, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 1138 VCPECKKTFSSAHHMKVHLR-IHSGIRPYKCPV 1169
+C C K FS H+ H++ +H+ RP+KC V
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EK Y C E C KSF+ A H R+HSGEKP
Sbjct: 10 EKLYNCKE--CGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K+FS A + H R+HSG +P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 556-
588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C V C KAFS S H R H+GEKP
Sbjct: 11 KPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C V C+K F+ ++SL +H VHS +P
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C C K+F+ + H R+HSGEKP
Sbjct: 10 EKPYECDV--CRKAFSHHASLTQHQRVHSGEKP 40
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIK 424
+ +GPPG GKT++A+ IAR N + R S S V EI+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-VTSGVKEIR 92
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 359 MEDVKKRILEFIAVSQLKGTTQ-GKILCFYGPPGVGKTSIAKSIA 402
+E++ KR F AV++L T + G+ L GP G GKT+ + IA
Sbjct: 15 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 59
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K F + H RIH+GEKP
Sbjct: 10 EKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 359 MEDVKKRILEFIAVSQLKGTTQ-GKILCFYGPPGVGKTSIAKSIA 402
+E++ KR F AV++L T + G+ L GP G GKT+ + IA
Sbjct: 14 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQ 440
K L +GPPG GKT +A+++A + + S ++ YVG V
Sbjct: 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS---------KYVGDGEKLVRA 104
Query: 441 CMKKTKTENP-LVLIDEVD 458
+ P ++ IDEVD
Sbjct: 105 LFAVARHMQPSIIFIDEVD 123
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
E+ Y C E C K+FA + H RIH+GEKP
Sbjct: 10 ERHYECSE--CGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
R Y+C C KAF+ + + H R HTGEKP
Sbjct: 11 RHYEC--SECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C + C K+F+ H RIH+GEKP
Sbjct: 10 EKPFDCID--CGKAFSDHIGLNQHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P+ C C KAFS H R HTGEKP
Sbjct: 11 KPFDCI--DCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 6.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C + C ++F+ H R HTGEKP
Sbjct: 10 EKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.44, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K+F + ++ H HSGEKP
Sbjct: 10 EKPYKCNE--CGKAFRARSSLAIHQATHSGEKP 40
Score = 33.5 bits (75), Expect = 0.74, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PYKC C KAF + S H TH+GEKP
Sbjct: 11 KPYKC--NECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 809-
841) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY C C K+F S L +H+R HT E
Sbjct: 10 EKPYSC--NVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human Zinc
Finger Protein 406
Length = 36
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 1170 EYCEKAFSTQYSRKAHIRTHTGEK 1193
EYC K F ++S +AH+R HT EK
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1200 EFCSKSFKTSGDLQKHVRTHTDE 1222
E+C+K FK LQ H+R HT+E
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNE 35
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 640-
672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C V C KAF+ + H +THTGEKP
Sbjct: 11 KPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+P+ C V C ++FT H +THTGEKP
Sbjct: 10 EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY C + CSK+F L +H +THT E
Sbjct: 10 EKPYEC--KVCSKAFTQKAHLAQHQKTHTGE 38
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C C K+F + H + H+GEKP
Sbjct: 10 EKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C+V C K FT+ + L +H H+ +P
Sbjct: 10 EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
+PF C C R F+ S+ K H RTHTGEK
Sbjct: 1 KPFQCKT--CQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
+P++C C++ FS K H RTHTGEK
Sbjct: 1 KPFQCKT--CQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.50, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C E C K F + + +H R HSGEKP
Sbjct: 10 EKPFKCEE--CGKGFYTNSQCYSHQRSHSGEKP 40
Score = 33.9 bits (76), Expect = 0.62, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P+KC E C K F T +H R+H+GEKP
Sbjct: 11 KPFKC--EECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C C + F T++ H R+H+GEKP
Sbjct: 10 EKPFKCE--ECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
KPY+C E C K+F+ ++ H IH+GEKP
Sbjct: 11 KPYMCNE--CGKAFSVYSSLTTHQVIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 850 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
KPY+C +C K F+ YSSL H ++H+ +P
Sbjct: 11 KPYMC--NECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
++PY C C KAFS S H HTGEKP
Sbjct: 10 VKPYMC--NECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|3LJC|A Chain A, Crystal Structure Of Lon N-Terminal Domain
Length = 252
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 190 VDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRXXXXXXXXXXXXXXXXXXXXIGREVE 249
+D+P LAD AA + ++Q++LE D+ +R I V+
Sbjct: 166 IDDPARLADTIAAHXPLKLADKQSVLEXSDVNERLEYLXAXXESEIDLLQVEKRIRNRVK 225
Query: 250 EKVKQQHRKYILQEQLKAI 268
++ ++ R+Y L EQ KAI
Sbjct: 226 KQXEKSQREYYLNEQXKAI 244
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 386 FYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHR--RTYVGAMPGKVIQCMK 443
GPPG GKT +AK++A N F +KG YVG V Q +
Sbjct: 49 LAGPPGCGKTLLAKAVA---NESGLNF--------ISVKGPELLNMYVGESERAVRQVFQ 97
Query: 444 KTKTENPLVL-IDEVDKI 460
+ K P V+ DEVD +
Sbjct: 98 RAKNSAPCVIFFDEVDAL 115
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 329-
359) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.55, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC+KTFS + +H RIH+G P
Sbjct: 13 CSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+GEK + C E C K+F+ + H RIH+GE P
Sbjct: 6 SGEKLHECSE--CRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C C KSF ++ H RIH+GEKP
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PYKC V C K+F S H R HTGEKP
Sbjct: 11 KPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+P+ C V C +SF + VH R HTGEKP
Sbjct: 10 EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY+C + C KSF+ L H R HT E
Sbjct: 10 EKPYKC--DVCHKSFRYGSSLTVHQRIHTGE 38
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+P+ C + C +SFT + VH + HTGEKP
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C + C KSF + H +IH+GEKP
Sbjct: 10 EKPYEC--SICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C + C K FT+ S L+ H +H+ +P
Sbjct: 10 EKPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C + C K+F+ + H + HTGEKP
Sbjct: 11 KPYECSI--CGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 581-
609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+GEKPY C C K+F L H RTHT E
Sbjct: 6 SGEKPYECTD--CGKAFGLKSQLIIHQRTHTGE 36
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
+GEKPY C + C K+F + H R H+GE
Sbjct: 6 SGEKPYECTD--CGKAFGLKSQLIIHQRTHTGE 36
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 1192
SG +PY+C C KAF + H RTHTGE
Sbjct: 6 SGEKPYEC--TDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C + C KSF + H RIH+GE P
Sbjct: 10 EKPYECSD--CGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 795 PVLGCDRSFTTSNIRKVHIRT-HTG---EKPYVCGEAGC---DKSFASATNYKNHMRIHS 847
P CDR+F+T + H+ H G + +VC C KSF + NH+R+H+
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 848 GEK 850
GEK
Sbjct: 87 GEK 89
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 1142 CKKTFSSAHHMKVHLRIHSGIRP----YKCPVEYCE---KAFSTQYSRKAHIRTHTGEK 1193
C +TFS+ H + H+ + P + C E C K+F +Y HIR HTGEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 1168 PVEYCEKAFSTQYSRKAHIRT-HTG---EKPYRCAHEFC---SKSFKTSGDLQKHVRTHT 1220
P + C++ FST + H+ H G + + C E C KSFK L H+R HT
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT 86
Query: 1221 DE 1222
E
Sbjct: 87 GE 88
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 411-
441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY C C K+F T +L H RTHT E
Sbjct: 10 EKPYECNE--CQKAFNTKSNLMVHQRTHTGE 38
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 1192
+PY+C C+KAF+T+ + H RTHTGE
Sbjct: 11 KPYEC--NECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
EKPY C E C K+F + +N H R H+GE
Sbjct: 10 EKPYECNE--CQKAFNTKSNLMVHQRTHTGE 38
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGE 819
E+P+ C C ++F T + VH RTHTGE
Sbjct: 10 EKPYECNE--CQKAFNTKSNLMVHQRTHTGE 38
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 33.1 bits (74), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 857 RDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 902
+D ++RF+ S+ ++ L+H D + C R YR+ C ++H+K
Sbjct: 62 KDSKERFSRKMSVQEYELIHKDKED---ENCLRKYRRQCMQDMHQK 104
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 752-
784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C V C KAFS + S H R H+G+KP
Sbjct: 11 KPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C + C K+F+ + H RIHSG+KP
Sbjct: 10 EKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+P+ C V C ++F+ VH R H+G+KP
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C V C K F+ SL H +HS +P
Sbjct: 10 EKPYECSV--CGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 507-
539) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PYKC E C K ++++++ H + HTGE+P
Sbjct: 11 KPYKC--EKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C + C K + S N H ++H+GE+P
Sbjct: 10 EKPYKCEK--CGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 371 AVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
A++ K +G ++ G PG GKT+IA +A L +E +R V
Sbjct: 3 ALTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
T EKPY C E C K+F + +N H IH+GEK
Sbjct: 8 TKEKPYKCYE--CGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis Zinc
Finger Protein
Length = 28
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 1191
+RPY C V C K FS ++ + H R HTG
Sbjct: 1 MRPYSCSV--CGKRFSLKHQMETHYRVHTG 28
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSG 1161
C C K FS H M+ H R+H+G
Sbjct: 6 CSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 273-
303) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
SG +P+ C CEKAFS++ H +TH EKP
Sbjct: 6 SGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+GEKP+ C + C+K+F+S + H + H+ EKP
Sbjct: 6 SGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
+ E+PF C C+++F++ + VH +TH EKP
Sbjct: 6 SGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
SGEKP+ C C+K F+ S L H H++ +P
Sbjct: 6 SGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 423-
455) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQMSG 1227
EKPY+C C K +K DL H R HT E ++SG
Sbjct: 10 EKPYKCVE--CGKGYKRRLDLDFHQRVHTGE-KLSG 42
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
EKPY C E C K + + H R+H+GEK
Sbjct: 10 EKPYKCVE--CGKGYKRRLDLDFHQRVHTGEK 39
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34 Structures
Length = 28
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1164 PYKCPVEYCEKAFSTQYSRKAHIRTHTG 1191
P++C C K FS ++ K H++ HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K F ++ H R+H+G KP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K FT+ S L +H VH+ +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC K F+ H+ H R+H+G +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K F ++ H IH+GEKP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K FT+ S L +H +H+ +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 793 PCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
PC + C ++FT ++ H+R HTGEK
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 1167 CPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C C KAF+ S AH+R HTGEK
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
T E P+ C E C K+F+ + + H IH+GE P
Sbjct: 8 TKEHPFKCNE--CGKTFSHSAHLSKHQLIHAGENP 40
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC KTFS + H+ H IH+G P
Sbjct: 15 CNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human Zinc
Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
+PYKCP C A + + + H+R HTGEK
Sbjct: 8 KPYKCP--QCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY CQV C K F S L +H VHS RP
Sbjct: 10 EKPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C C K+F +++ H +HSGE+P
Sbjct: 10 EKPYKC--QVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.8 bits (68), Expect = 4.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY+C + C K+F+ S L +H H+ E
Sbjct: 10 EKPYKC--QVCGKAFRVSSHLVQHHSVHSGE 38
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PYKC V C KAF H H+GE+P
Sbjct: 11 KPYKCQV--CGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium Target
Hr7614b
Length = 85
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 1135 ENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGE 1192
E ++CP C ++F+S + HLR+ + + C +YC F + HI + H E
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPC--KYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
E+ Y C E C K+F + H RIH GEKP
Sbjct: 10 ERHYECSE--CGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTD 1221
RTH+GEKPY C C F SG ++ H+ + HT+
Sbjct: 8 RTHSGEKPYECY--ICHARFTQSGTMKMHILQKHTE 41
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARAL-NREYFRFSVGGMSDVAEIKGHRRTYVGA 433
L G+ + GPPG+ K+ IA+ + A N F + + S E+ G
Sbjct: 35 LLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK 94
Query: 434 MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPA--SALLEMLDPEQNANFLDHYLDV 491
G+ + E +V +DE+ K G PA + LL ++ Q N H +
Sbjct: 95 DEGRYERLTSGYLPEAEIVFLDEIWKAG------PAILNTLLTAINERQFRNG-AHVEKI 147
Query: 492 PVDLSRVLFICTANVI---DTIPEPLRDRM 518
P+ L + +N + D+ E L DRM
Sbjct: 148 PMR----LLVAASNELPEADSSLEALYDRM 173
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+ PYKC CEK+FS + H R HT EKP
Sbjct: 10 VNPYKC--SQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+PF C + C + F+ + VH + HTGEKP
Sbjct: 10 EKPFKC--VECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+P+KC VE C K FS + + H + HTGEKP
Sbjct: 11 KPFKC-VE-CGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C E C K F+ + H ++H+GEKP
Sbjct: 10 EKPFKCVE--CGKGFSRRSALNVHHKLHTGEKP 40
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 368 EFIAVSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNRE 408
E + + G + G+I F G GVGKTSIA+ +A+ LN E
Sbjct: 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K F ++ H IH+GEKP
Sbjct: 10 EKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K FT+ S L +H +H+ +P
Sbjct: 10 EKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EK + C E CD F+ A++ + H +H GEKP
Sbjct: 10 EKTWKCRE--CDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C + C K+F+ ++ H IH+G+KP
Sbjct: 10 EKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C C KAFS + S H HTG+KP
Sbjct: 11 KPYEC--NQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 342 NLDLTQAAKILDDDHYGMEDVKKR---ILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIA 398
LD + AK G E+ ++ I+E I ++ G+ + GPPG GKT++A
Sbjct: 25 GLDESGLAKQAASGLVGQENAREACGVIVELIKSKKM----AGRAVLLAGPPGTGKTALA 80
Query: 399 KSIARALN 406
+IA+ L
Sbjct: 81 LAIAQELG 88
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
T EKPY C E C K+F + H R HSGE
Sbjct: 8 TREKPYECSE--CGKAFIRNSQLIVHQRTHSGE 38
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
T EKPY C+ C K+F + L H RTH+ E
Sbjct: 8 TREKPYECSE--CGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
E+P+ C E C K F ++ H+R+HS EK
Sbjct: 10 ERPFKCNE--CGKGFGRRSHLAGHLRLHSREK 39
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K F ++ H IH+GEKP
Sbjct: 10 EKPYKCHE--CGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C +C K F S L +H L+H+ +P
Sbjct: 10 EKPYKCH--ECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+GE PY C+ C K+F L H RTH E
Sbjct: 6 SGENPYECSE--CGKAFNRKDQLISHQRTHAGE 36
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
+GE PY C E C K+F +H R H+GE
Sbjct: 6 SGENPYECSE--CGKAFNRKDQLISHQRTHAGE 36
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 1192
SG PY+C C KAF+ + +H RTH GE
Sbjct: 6 SGENPYEC--SECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EK Y C E C K F+ + H +IH+GEKP
Sbjct: 10 EKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
Length = 32
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
++PY C H C K+F + DL +H ++H ++
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Query: 384 LCFYGPPGVGKTSIAKSIARAL-NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCM 442
F GP GVGKT +AK++A L + E + M++ E R +GA PG V
Sbjct: 591 FLFLGPTGVGKTELAKTLAATLFDTEEAMIRI-DMTEYMEKHAVSR-LIGAPPGYVGYEE 648
Query: 443 KKTKTEN------PLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496
TE ++L DE++K D + LL++LD + D + VD
Sbjct: 649 GGQLTEAVRRRPYSVILFDEIEK----AHPDVFNILLQILD---DGRLTDSH-GRTVDFR 700
Query: 497 RVLFICTANV 506
+ I T+N+
Sbjct: 701 NTVIILTSNL 710
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 204-
236) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+PY+C C K+FS Y H THT EKP
Sbjct: 11 KPYQC--SECGKSFSGSYRLTQHWITHTREKP 40
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
KPY+C+ C KSF S L +H THT E
Sbjct: 11 KPYQCSE--CGKSFSGSYRLTQHWITHTRE 38
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
KPY C E C KSF+ + H H+ EKP
Sbjct: 11 KPYQCSE--CGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKP+ C E C KSF+ + H RIH+GE P
Sbjct: 10 EKPHECRE--CGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EK Y C C K F+ +++ + H R+H+GEKP
Sbjct: 10 EKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C C K FS + H++ H R+H+G +P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
YKC V C K FS + H R HTGEKP
Sbjct: 13 YKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+ + C V C + F+ S+ + H R HTGEKP
Sbjct: 10 EKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|3R20|A Chain A, Crystal Structure Of Cytidylate Kinase From Mycobacterium
Smegmatis
Length = 233
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEI 423
GP G GK+S+++ +ARAL Y G M +A +
Sbjct: 16 GPAGTGKSSVSRGLARALGARY--LDTGAMYRIATL 49
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 371 AVSQLKGTTQGKIL---CFYGPPGVGKTSIAKSIARAL 405
AV+ LK T + L FYGPPG GKTS ++ + L
Sbjct: 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 374 QLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVA 421
+L+ K + GP GVGKT IA+ +A+ N + + ++V
Sbjct: 43 ELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 90
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
+K ++C GC K + ++ + H+R H+GE+
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C +C KTFS + VH R H+G++P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
++PY C C K FS + H R+HTG KP
Sbjct: 10 VKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARAL 405
+G ++ F+GP G+GKT++ K+I+ L
Sbjct: 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 374 QLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVA 421
+L+ K + GP GVGKT IA+ +A+ N + + ++V
Sbjct: 42 ELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 89
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 374 QLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVA 421
+L+ K + GP GVGKT IA+ +A+ N + + ++V
Sbjct: 49 ELRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 96
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 32
Length = 41
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQMSG 1227
+G++ Y C C KSF+ G L H R HT SG
Sbjct: 6 SGQRVYECQE--CGKSFRQKGSLTLHERIHTGSGPSSG 41
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+KPY C E C K F ++ H IH+GEKP
Sbjct: 10 KKPYKCNE--CGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E+P+PC + C F K H+R HTG P
Sbjct: 9 EKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C C F K+H+RIH+G P
Sbjct: 9 EKPYPC--EICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.0 bits (66), Expect = 9.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQMSG 1227
EKPY C E C F+ L+ H+R HT SG
Sbjct: 9 EKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPSSG 42
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 112 HSINITTDYNDTFYHVMQMAAENDDNFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMN 171
+INI ND M+ N D LVK L E ++I+ + ++ ++
Sbjct: 435 EAINIMNRSNDALIKFMEYHISNTDETKGENYQLVKTLGE-------QLIENCKQVLDVD 487
Query: 172 PLYKE 176
P+YK+
Sbjct: 488 PVYKD 492
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 112 HSINITTDYNDTFYHVMQMAAENDDNFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMN 171
+INI ND M+ N D LVK L E ++I+ + ++ ++
Sbjct: 435 EAINIMNRSNDALIKFMEYHISNTDETKGENYQLVKTLGE-------QLIENCKQVLDVD 487
Query: 172 PLYKE 176
P+YK+
Sbjct: 488 PVYKD 492
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVA 421
K + GP GVGKT IA+ +A+ N + + ++V
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 90
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 4.5, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
EKPY C + C KSF + + H + H+GE+
Sbjct: 10 EKPYKCSD--CGKSFTWKSRLRIHQKCHTGER 39
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKPY+C+ C KSF L+ H + HT E
Sbjct: 10 EKPYKCSD--CGKSFTWKSRLRIHQKCHTGE 38
Score = 30.0 bits (66), Expect = 9.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
E+P+ C C +SFT + ++H + HTGE+
Sbjct: 10 EKPYKCS--DCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 780-
812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIR 1163
C EC+KTF H+ H R+H+G R
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single Zinc
Finger From A Human Enhancer Binding Protein In Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single Zinc
Finger From A Human Enhancer Binding Protein In Solution
Length = 30
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRT 1218
+PY C+ +C+ SFKT G+L KH+++
Sbjct: 1 RPYHCS--YCNFSFKTKGNLTKHMKS 24
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 368 EFIAVSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNRE 408
E + + G + G+I F G GVGKTSIA+ +A+ LN E
Sbjct: 44 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 87
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKPY C+ C RF + + L H L+H+ P
Sbjct: 9 EKPYKCET--CGARFVQVAHLRAHVLIHTGSGP 39
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 368 EFIAVSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNRE 408
E + + G + G+I F G GVGKTSIA+ +A+ LN E
Sbjct: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 368 EFIAVSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNRE 408
E + + G + G+I F G GVGKTSIA+ +A+ LN E
Sbjct: 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 368 EFIAVSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNRE 408
E + + G + G+I F G GVGKTSIA+ +A+ LN E
Sbjct: 44 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 87
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQC 441
K + GP GVGKT IA+ +A+ N + + ++V YVG +I+
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG--------YVGKEVDSIIRD 102
Query: 442 MKKTKTENPLVLIDEVDK 459
+ T + LV E+ K
Sbjct: 103 L--TDSAXKLVRQQEIAK 118
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 368 EFIAVSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIARALNRE 408
E + + G + G+I F G GVGKTSIA+ +A+ LN E
Sbjct: 25 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 68
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
EKPY C E C K F + H +H+GEKP
Sbjct: 10 EKPYKCEE--CGKGFICRRDLYTHHMVHTGEKP 40
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.4 bits (67), Expect = 6.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
SG++P+VC++ C FT ++ +H VH+D
Sbjct: 3 SGKRPFVCRI--CLSAFTTKANCARHLKVHTD 32
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region 768-
800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRP 1164
C EC + F+ H+ H RIH+G +P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 857 RDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 902
+D ++R + S+ ++ L+H D + C R YR+ C ++H+K
Sbjct: 62 KDSKERMSRKMSIQEYELIHQDKED---EGCLRKYRRQCMQDMHQK 104
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
GP G GK+S+AK +AR L Y
Sbjct: 11 GPSGTGKSSVAKELARQLGASYL 33
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 383 ILCFYGPPGVGKTSIAKSIAR 403
IL F GPPG GK + AK +A+
Sbjct: 2 ILVFLGPPGAGKGTQAKRLAK 22
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
KPYVC E C K+F S + H R H+GE
Sbjct: 11 KPYVCNE--CGKAFRSKSYLIIHTRTHTGE 38
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 30.0 bits (66), Expect = 7.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 1170 EYCEKAFSTQYSRKAHIRTHTGEK 1193
E C +AF+ Q + K H R+HT EK
Sbjct: 6 EVCTRAFARQEALKRHYRSHTNEK 29
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 384 LCFYGPPGVGKTSIAKSIARAL 405
F GP GVGKT +A+++A ++
Sbjct: 524 FIFLGPTGVGKTELARALAESI 545
>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
Length = 29
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1139 CPECKKTFSSAHHMKVHLRIH 1159
CP C K F+ ++K HL+IH
Sbjct: 5 CPHCDKKFNQVGNLKAHLKIH 25
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
EKP+ C + C K F S L +H++VH+ +P
Sbjct: 10 EKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMR-IHSGEKP 851
+KPY C E C K+F T+ H R H+GEKP
Sbjct: 10 KKPYECIE--CGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 30.0 bits (66), Expect = 9.4, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILC---------FYGPPGVGKTSIAKSIA 402
LD + G++ VK RI E A+ ++ Q L F G PG GKT++A +A
Sbjct: 22 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 81
Query: 403 RALNR 407
L+R
Sbjct: 82 GLLHR 86
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 30.0 bits (66), Expect = 9.4, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILC---------FYGPPGVGKTSIAKSIA 402
LD + G++ VK RI E A+ ++ Q L F G PG GKT++A +A
Sbjct: 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMA 88
Query: 403 RALNR 407
L+R
Sbjct: 89 GLLHR 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,577,309
Number of Sequences: 62578
Number of extensions: 1311901
Number of successful extensions: 5433
Number of sequences better than 100.0: 266
Number of HSP's better than 100.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 4022
Number of HSP's gapped (non-prelim): 1170
length of query: 1230
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1120
effective length of database: 8,089,757
effective search space: 9060527840
effective search space used: 9060527840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)