Query psy8969
Match_columns 1230
No_of_seqs 669 out of 5117
Neff 6.9
Searched_HMMs 46136
Date Sat Aug 17 00:19:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0466 Lon ATP-dependent Lon 100.0 8E-176 2E-180 1536.6 63.2 633 137-786 108-775 (782)
2 KOG2004|consensus 100.0 3E-166 6E-171 1440.6 55.0 641 128-786 192-899 (906)
3 PRK10787 DNA-binding ATP-depen 100.0 5E-124 1E-128 1173.4 59.4 645 123-785 93-772 (784)
4 TIGR00763 lon ATP-dependent pr 100.0 1E-114 3E-119 1100.1 62.7 643 125-784 88-775 (775)
5 TIGR02903 spore_lon_C ATP-depe 100.0 4.3E-43 9.3E-48 433.7 37.1 487 208-784 54-615 (615)
6 TIGR02902 spore_lonB ATP-depen 100.0 1.2E-40 2.6E-45 406.4 31.3 379 354-784 65-531 (531)
7 PRK13765 ATP-dependent proteas 100.0 8.3E-38 1.8E-42 383.2 26.3 312 448-785 226-603 (637)
8 TIGR00764 lon_rel lon-related 100.0 1.8E-37 3.8E-42 382.4 27.5 311 448-785 217-594 (608)
9 TIGR02653 Lon_rel_chp conserve 100.0 7.5E-36 1.6E-40 355.5 25.8 167 607-784 473-672 (675)
10 PF05362 Lon_C: Lon protease ( 100.0 9.4E-34 2E-38 302.7 9.7 174 601-785 1-204 (204)
11 TIGR01242 26Sp45 26S proteasom 100.0 2.1E-30 4.6E-35 304.8 7.3 262 260-539 10-306 (364)
12 COG1222 RPT1 ATP-dependent 26S 100.0 8.7E-29 1.9E-33 274.0 11.9 224 345-588 142-384 (406)
13 PRK10865 protein disaggregatio 99.9 4.6E-26 1E-30 291.9 32.5 386 190-595 387-836 (857)
14 PRK03992 proteasome-activating 99.9 1.8E-27 4E-32 281.3 7.5 258 263-539 18-315 (389)
15 KOG1074|consensus 99.9 4.2E-26 9.1E-31 270.5 9.3 59 1137-1197 880-938 (958)
16 KOG0738|consensus 99.9 8.7E-26 1.9E-30 251.0 10.0 243 349-612 207-467 (491)
17 KOG0730|consensus 99.9 4.1E-25 8.9E-30 260.8 10.9 215 346-583 426-659 (693)
18 PRK05342 clpX ATP-dependent pr 99.9 9E-24 1.9E-28 249.4 19.9 261 343-611 60-402 (412)
19 KOG0727|consensus 99.9 1.3E-24 2.9E-29 228.7 11.4 215 354-588 155-388 (408)
20 KOG3623|consensus 99.9 6.8E-25 1.5E-29 255.2 7.6 108 791-904 210-332 (1007)
21 TIGR02639 ClpA ATP-dependent C 99.9 1.2E-22 2.6E-27 258.3 28.3 292 290-595 385-719 (731)
22 KOG0736|consensus 99.9 1.7E-23 3.7E-28 248.5 18.0 240 349-610 667-928 (953)
23 KOG2462|consensus 99.9 1.5E-24 3.3E-29 232.4 5.8 77 1138-1218 189-265 (279)
24 COG1223 Predicted ATPase (AAA+ 99.9 1.6E-23 3.6E-28 222.0 12.9 194 318-539 91-297 (368)
25 TIGR03345 VI_ClpV1 type VI sec 99.9 4.5E-21 9.9E-26 245.3 35.0 259 325-596 536-839 (852)
26 KOG0733|consensus 99.9 7.3E-23 1.6E-27 237.8 15.5 210 354-582 190-417 (802)
27 KOG0733|consensus 99.9 3.1E-23 6.8E-28 240.8 12.4 238 323-582 480-739 (802)
28 COG1067 LonB Predicted ATP-dep 99.9 1E-22 2.2E-27 248.9 12.3 321 446-786 223-621 (647)
29 CHL00095 clpC Clp protease ATP 99.9 2.1E-20 4.6E-25 240.3 34.1 257 326-595 480-789 (821)
30 KOG0737|consensus 99.9 3.1E-22 6.7E-27 223.8 14.3 215 354-583 92-318 (386)
31 KOG0726|consensus 99.9 7.7E-23 1.7E-27 219.4 7.4 223 345-587 176-417 (440)
32 COG0542 clpA ATP-binding subun 99.9 2.4E-20 5.2E-25 229.2 29.5 253 330-596 466-763 (786)
33 COG2256 MGS1 ATPase related to 99.9 1.7E-21 3.8E-26 219.7 16.3 215 354-621 24-245 (436)
34 PRK11034 clpA ATP-dependent Cl 99.9 2.1E-20 4.4E-25 235.0 27.2 297 286-595 384-723 (758)
35 TIGR00382 clpX endopeptidase C 99.9 7.3E-21 1.6E-25 223.5 20.6 259 344-610 67-407 (413)
36 KOG0728|consensus 99.9 3.7E-21 8.1E-26 202.7 14.1 223 345-587 135-379 (404)
37 PTZ00454 26S protease regulato 99.9 1.5E-21 3.3E-26 230.2 12.5 210 346-579 137-369 (398)
38 CHL00195 ycf46 Ycf46; Provisio 99.9 3.4E-21 7.4E-26 231.6 15.7 167 354-540 228-406 (489)
39 KOG0734|consensus 99.9 4.9E-21 1.1E-25 219.4 15.9 187 341-550 291-494 (752)
40 KOG0739|consensus 99.9 1E-20 2.2E-25 204.0 17.3 160 351-524 130-297 (439)
41 CHL00181 cbbX CbbX; Provisiona 99.8 1.3E-20 2.9E-25 213.8 18.5 223 338-596 7-262 (287)
42 KOG0731|consensus 99.8 2.3E-21 5.1E-26 236.1 13.1 217 352-587 309-544 (774)
43 KOG0652|consensus 99.8 1.5E-21 3.3E-26 206.5 9.2 212 354-585 171-401 (424)
44 PTZ00361 26 proteosome regulat 99.8 5.3E-21 1.2E-25 226.8 14.9 213 349-581 178-409 (438)
45 TIGR01243 CDC48 AAA family ATP 99.8 1.1E-20 2.5E-25 241.0 17.4 211 350-583 449-679 (733)
46 KOG1074|consensus 99.8 3.5E-21 7.7E-26 229.0 10.6 86 1133-1222 602-694 (958)
47 PRK05201 hslU ATP-dependent pr 99.8 5.1E-20 1.1E-24 213.0 18.6 266 342-612 3-430 (443)
48 PLN00020 ribulose bisphosphate 99.8 9.1E-20 2E-24 206.2 19.4 193 354-569 119-329 (413)
49 KOG0651|consensus 99.8 5.2E-21 1.1E-25 208.1 7.7 219 354-593 132-370 (388)
50 TIGR03346 chaperone_ClpB ATP-d 99.8 4.7E-18 1E-22 219.3 35.8 260 324-596 534-834 (852)
51 COG0464 SpoVK ATPases of the A 99.8 2.3E-20 5E-25 228.6 13.5 169 350-540 238-424 (494)
52 TIGR00390 hslU ATP-dependent p 99.8 1.2E-19 2.6E-24 209.8 18.5 262 346-612 4-428 (441)
53 KOG0729|consensus 99.8 1.4E-20 2.9E-25 199.9 9.4 224 350-593 173-415 (435)
54 KOG2462|consensus 99.8 5.4E-21 1.2E-25 205.3 4.8 107 789-903 159-265 (279)
55 KOG3608|consensus 99.8 1.3E-20 2.9E-25 205.0 6.9 199 788-1221 173-377 (467)
56 PF05496 RuvB_N: Holliday junc 99.8 2.4E-19 5.3E-24 191.5 15.9 188 348-571 18-213 (233)
57 TIGR02881 spore_V_K stage V sp 99.8 9.4E-19 2E-23 197.0 20.3 206 355-596 7-246 (261)
58 KOG0735|consensus 99.8 9.1E-19 2E-23 206.7 20.3 177 353-552 666-860 (952)
59 TIGR03689 pup_AAA proteasome A 99.8 4.7E-19 1E-23 212.8 17.5 174 348-541 176-380 (512)
60 COG1219 ClpX ATP-dependent pro 99.8 9.7E-19 2.1E-23 191.0 17.6 260 345-612 52-392 (408)
61 TIGR01241 FtsH_fam ATP-depende 99.8 1.3E-18 2.7E-23 213.0 16.7 167 351-539 52-238 (495)
62 KOG3608|consensus 99.8 8.4E-20 1.8E-24 198.8 5.7 196 791-1220 134-345 (467)
63 KOG0740|consensus 99.8 1.3E-19 2.9E-24 210.0 7.0 181 345-539 144-333 (428)
64 TIGR02880 cbbX_cfxQ probable R 99.8 7.5E-18 1.6E-22 191.5 19.1 218 343-596 11-261 (284)
65 COG2255 RuvB Holliday junction 99.8 9E-18 1.9E-22 181.9 17.5 182 351-567 23-212 (332)
66 COG0465 HflB ATP-dependent Zn 99.8 3.4E-18 7.4E-23 205.8 14.5 187 341-539 130-333 (596)
67 CHL00176 ftsH cell division pr 99.7 1.8E-17 3.9E-22 205.4 18.1 221 354-611 183-420 (638)
68 KOG2028|consensus 99.7 4E-17 8.7E-22 180.4 15.6 248 323-622 115-376 (554)
69 CHL00206 ycf2 Ycf2; Provisiona 99.7 8E-18 1.7E-22 217.2 11.5 150 377-536 1626-1814(2281)
70 KOG3623|consensus 99.7 9.9E-18 2.1E-22 196.1 10.1 84 1130-1217 888-971 (1007)
71 PRK11823 DNA repair protein Ra 99.7 1.2E-17 2.6E-22 200.6 7.5 94 685-784 351-444 (446)
72 TIGR01243 CDC48 AAA family ATP 99.7 6.6E-17 1.4E-21 206.6 13.9 165 353-539 177-359 (733)
73 TIGR00416 sms DNA repair prote 99.7 2E-16 4.4E-21 190.1 16.3 101 662-779 353-453 (454)
74 PRK14956 DNA polymerase III su 99.7 2.8E-16 6E-21 186.4 14.8 216 352-614 16-246 (484)
75 PRK10733 hflB ATP-dependent me 99.7 2.6E-16 5.6E-21 197.3 13.4 166 353-540 151-336 (644)
76 PRK07003 DNA polymerase III su 99.7 4.6E-16 1E-20 190.1 14.9 217 352-614 14-244 (830)
77 PRK12323 DNA polymerase III su 99.6 9.6E-16 2.1E-20 185.4 15.4 213 352-614 14-249 (700)
78 PRK14962 DNA polymerase III su 99.6 9.9E-16 2.2E-20 184.6 15.0 205 352-614 12-242 (472)
79 PLN03025 replication factor C 99.6 2E-15 4.3E-20 175.0 17.0 201 354-614 13-223 (319)
80 TIGR00635 ruvB Holliday juncti 99.6 2.5E-15 5.4E-20 173.1 17.3 220 354-612 4-227 (305)
81 PRK14960 DNA polymerase III su 99.6 2.1E-15 4.6E-20 182.9 17.0 212 352-613 13-242 (702)
82 KOG0745|consensus 99.6 2.6E-15 5.7E-20 169.8 15.9 219 382-608 227-528 (564)
83 PRK00080 ruvB Holliday junctio 99.6 3.7E-15 8.1E-20 173.4 17.9 221 352-611 23-247 (328)
84 PF00004 AAA: ATPase family as 99.6 1.5E-16 3.3E-21 159.0 5.0 117 384-521 1-127 (132)
85 PRK13342 recombination factor 99.6 4.3E-15 9.3E-20 178.0 17.5 206 354-619 12-224 (413)
86 PRK14958 DNA polymerase III su 99.6 2.5E-15 5.5E-20 182.8 15.6 214 354-614 16-244 (509)
87 PRK04195 replication factor C 99.6 5.5E-15 1.2E-19 180.3 18.4 191 354-583 14-205 (482)
88 PRK13341 recombination factor 99.6 4.1E-15 8.9E-20 186.7 16.1 217 354-618 28-251 (725)
89 KOG0989|consensus 99.6 2.5E-15 5.5E-20 164.7 12.1 191 354-586 36-236 (346)
90 KOG0730|consensus 99.6 3.9E-15 8.4E-20 177.1 12.2 199 354-579 184-404 (693)
91 PRK08691 DNA polymerase III su 99.6 2.9E-15 6.3E-20 183.5 10.3 212 353-614 15-244 (709)
92 PRK14964 DNA polymerase III su 99.6 1.4E-14 3E-19 174.0 15.8 210 354-613 13-240 (491)
93 PHA02544 44 clamp loader, smal 99.6 1.5E-14 3.3E-19 167.3 15.5 190 354-583 21-212 (316)
94 KOG0732|consensus 99.6 4.1E-15 8.9E-20 186.1 11.2 166 354-536 265-448 (1080)
95 PRK14949 DNA polymerase III su 99.6 2.5E-14 5.3E-19 178.2 17.6 196 353-585 15-225 (944)
96 PRK14961 DNA polymerase III su 99.6 3.3E-14 7.1E-19 167.5 17.8 214 351-614 13-244 (363)
97 PRK07764 DNA polymerase III su 99.6 1.5E-14 3.3E-19 183.5 15.8 217 353-614 14-246 (824)
98 PHA02244 ATPase-like protein 99.6 7.5E-14 1.6E-18 160.1 19.6 136 381-530 119-265 (383)
99 TIGR02640 gas_vesic_GvpN gas v 99.6 3.1E-14 6.8E-19 160.4 16.0 162 359-538 7-197 (262)
100 COG1220 HslU ATP-dependent pro 99.6 4.7E-14 1E-18 155.6 16.8 261 345-613 6-432 (444)
101 PRK14951 DNA polymerase III su 99.6 2.6E-14 5.6E-19 175.9 16.4 212 352-613 14-248 (618)
102 PRK14952 DNA polymerase III su 99.6 3.4E-14 7.4E-19 174.4 17.1 217 353-614 12-244 (584)
103 PRK06645 DNA polymerase III su 99.6 8.5E-15 1.8E-19 177.1 11.6 214 354-614 21-256 (507)
104 PRK07994 DNA polymerase III su 99.6 3.2E-14 7E-19 175.3 16.7 215 352-613 14-243 (647)
105 PRK14957 DNA polymerase III su 99.6 3.4E-14 7.4E-19 172.8 16.0 213 354-613 16-243 (546)
106 PRK14963 DNA polymerase III su 99.5 5.4E-14 1.2E-18 170.9 16.5 202 352-615 12-241 (504)
107 PRK14959 DNA polymerase III su 99.5 6.6E-14 1.4E-18 171.1 17.3 215 352-613 14-243 (624)
108 TIGR02639 ClpA ATP-dependent C 99.5 2.8E-14 6.2E-19 182.1 14.6 197 348-577 176-390 (731)
109 PRK14965 DNA polymerase III su 99.5 4.7E-14 1E-18 174.7 15.8 213 351-613 13-243 (576)
110 KOG1051|consensus 99.5 2.4E-13 5.1E-18 170.0 20.5 236 341-589 549-834 (898)
111 PRK05563 DNA polymerase III su 99.5 1.1E-13 2.3E-18 170.9 16.7 212 352-613 14-243 (559)
112 KOG3576|consensus 99.5 3.1E-15 6.8E-20 152.7 1.5 114 789-908 115-239 (267)
113 PF07724 AAA_2: AAA domain (Cd 99.5 1.9E-14 4.1E-19 151.5 7.0 117 382-508 4-131 (171)
114 KOG0741|consensus 99.5 2.2E-14 4.7E-19 165.3 7.5 167 377-569 252-440 (744)
115 TIGR03345 VI_ClpV1 type VI sec 99.5 1.1E-13 2.4E-18 177.8 14.2 188 348-567 181-385 (852)
116 PRK14969 DNA polymerase III su 99.5 2.1E-13 4.5E-18 167.2 15.4 211 354-614 16-244 (527)
117 PRK08451 DNA polymerase III su 99.5 2.5E-13 5.5E-18 164.5 15.5 202 352-614 12-242 (535)
118 COG2812 DnaX DNA polymerase II 99.5 1.7E-13 3.6E-18 164.0 13.7 211 354-614 16-244 (515)
119 PRK05896 DNA polymerase III su 99.5 4.1E-13 8.9E-18 163.5 17.2 215 352-612 14-242 (605)
120 PRK07133 DNA polymerase III su 99.5 6.7E-13 1.5E-17 164.5 18.5 222 346-613 10-242 (725)
121 KOG0744|consensus 99.5 2.3E-13 4.9E-18 149.6 12.5 172 352-539 140-340 (423)
122 TIGR01650 PD_CobS cobaltochela 99.5 3E-13 6.5E-18 154.0 14.0 148 381-538 64-232 (327)
123 KOG0991|consensus 99.5 1.4E-13 3.1E-18 144.8 9.9 195 331-583 13-217 (333)
124 PRK14955 DNA polymerase III su 99.5 3.7E-13 8.1E-18 160.4 14.8 221 352-613 14-256 (397)
125 PRK09111 DNA polymerase III su 99.5 2E-13 4.3E-18 168.6 12.7 212 352-613 22-256 (598)
126 COG0714 MoxR-like ATPases [Gen 99.5 2.5E-13 5.5E-18 158.1 12.8 164 344-530 14-193 (329)
127 PRK12402 replication factor C 99.5 1.3E-12 2.8E-17 152.4 18.5 212 354-613 15-248 (337)
128 PF07728 AAA_5: AAA domain (dy 99.5 3.3E-14 7.1E-19 144.5 4.5 125 383-518 1-139 (139)
129 KOG3576|consensus 99.5 9.9E-15 2.2E-19 149.0 0.5 87 1132-1222 113-199 (267)
130 TIGR02397 dnaX_nterm DNA polym 99.5 9.4E-13 2E-17 154.8 17.2 214 349-612 9-240 (355)
131 PRK14953 DNA polymerase III su 99.5 1.8E-13 3.9E-18 165.9 11.0 217 352-614 14-244 (486)
132 KOG0743|consensus 99.4 1.9E-12 4.1E-17 149.7 18.4 185 374-587 228-434 (457)
133 PRK00440 rfc replication facto 99.4 1.1E-12 2.3E-17 151.8 16.6 213 330-612 2-224 (319)
134 PRK06305 DNA polymerase III su 99.4 8.7E-13 1.9E-17 159.0 15.6 216 352-613 15-245 (451)
135 PRK06647 DNA polymerase III su 99.4 8.4E-13 1.8E-17 162.4 15.7 216 352-613 14-243 (563)
136 PRK14954 DNA polymerase III su 99.4 1.2E-12 2.7E-17 161.8 16.0 221 351-612 13-255 (620)
137 PRK10865 protein disaggregatio 99.4 1E-12 2.2E-17 169.6 14.6 168 348-542 172-356 (857)
138 PRK13407 bchI magnesium chelat 99.4 1.9E-12 4.1E-17 149.5 14.5 234 354-611 8-303 (334)
139 PRK07940 DNA polymerase III su 99.4 1.3E-12 2.8E-17 154.4 13.3 164 354-536 5-186 (394)
140 PRK14948 DNA polymerase III su 99.4 3.7E-12 7.9E-17 158.4 17.7 195 353-584 15-226 (620)
141 KOG0742|consensus 99.4 1.9E-12 4.2E-17 145.4 13.4 162 355-541 356-530 (630)
142 PRK14971 DNA polymerase III su 99.4 4.1E-12 9E-17 158.0 17.6 202 349-586 12-228 (614)
143 PRK08903 DnaA regulatory inact 99.4 1.3E-11 2.8E-16 136.2 19.5 195 357-614 23-226 (227)
144 PRK14970 DNA polymerase III su 99.4 6.4E-12 1.4E-16 148.6 17.9 211 352-612 15-231 (367)
145 PF07726 AAA_3: ATPase family 99.4 2.9E-13 6.2E-18 133.2 5.3 117 384-519 2-130 (131)
146 PRK14950 DNA polymerase III su 99.4 3.7E-12 8.1E-17 158.6 16.0 217 351-613 13-244 (585)
147 TIGR02928 orc1/cdc6 family rep 99.4 2.1E-11 4.5E-16 144.0 21.1 229 354-611 15-271 (365)
148 CHL00095 clpC Clp protease ATP 99.4 3.1E-12 6.7E-17 165.3 14.7 186 348-567 173-376 (821)
149 PRK06893 DNA replication initi 99.4 5.4E-12 1.2E-16 139.5 14.5 181 380-612 38-228 (229)
150 smart00763 AAA_PrkA PrkA AAA d 99.4 4.7E-12 1E-16 145.7 14.1 66 349-414 46-118 (361)
151 PRK11034 clpA ATP-dependent Cl 99.4 4.8E-12 1E-16 160.0 14.7 191 344-566 175-383 (758)
152 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.1E-11 4.6E-16 134.1 17.8 195 358-611 21-225 (226)
153 PTZ00112 origin recognition co 99.3 2.8E-11 6E-16 148.7 20.2 231 345-611 741-1003(1164)
154 CHL00081 chlI Mg-protoporyphyr 99.3 7.2E-12 1.6E-16 145.0 13.4 232 354-610 17-318 (350)
155 TIGR03346 chaperone_ClpB ATP-d 99.3 8E-12 1.7E-16 162.0 15.2 186 348-565 167-369 (852)
156 COG1066 Sms Predicted ATP-depe 99.3 2.4E-12 5.2E-17 146.7 9.0 114 651-784 341-454 (456)
157 PRK12422 chromosomal replicati 99.3 1.2E-11 2.7E-16 148.6 15.5 190 382-612 142-341 (445)
158 PRK00411 cdc6 cell division co 99.3 6.3E-11 1.4E-15 141.5 21.4 230 353-612 29-280 (394)
159 PRK06620 hypothetical protein; 99.3 3.1E-11 6.6E-16 131.9 15.7 204 330-611 4-213 (214)
160 PRK13531 regulatory ATPase Rav 99.3 1.9E-11 4.1E-16 145.1 14.9 175 345-537 11-192 (498)
161 PRK08084 DNA replication initi 99.3 3.2E-11 6.9E-16 133.9 15.8 180 381-612 45-234 (235)
162 TIGR02030 BchI-ChlI magnesium 99.3 1.7E-11 3.7E-16 142.0 13.8 231 354-609 4-304 (337)
163 COG0470 HolB ATPase involved i 99.3 1.4E-11 3E-16 142.8 11.2 147 354-531 1-173 (325)
164 TIGR02442 Cob-chelat-sub cobal 99.3 3.1E-11 6.8E-16 151.6 15.2 231 354-609 4-299 (633)
165 TIGR00368 Mg chelatase-related 99.3 5.1E-12 1.1E-16 153.3 6.6 109 661-784 54-164 (499)
166 PRK11331 5-methylcytosine-spec 99.2 7.5E-11 1.6E-15 139.0 15.0 161 354-525 175-357 (459)
167 smart00350 MCM minichromosome 99.2 6.4E-11 1.4E-15 145.5 15.0 174 347-537 196-398 (509)
168 PRK00149 dnaA chromosomal repl 99.2 4.6E-11 9.9E-16 145.0 13.1 188 382-612 149-347 (450)
169 TIGR00362 DnaA chromosomal rep 99.2 6.7E-11 1.4E-15 141.8 13.4 189 381-612 136-335 (405)
170 PF01078 Mg_chelatase: Magnesi 99.2 1.3E-11 2.9E-16 131.7 6.2 153 354-526 3-202 (206)
171 TIGR00678 holB DNA polymerase 99.2 3.3E-11 7.2E-16 129.1 9.0 140 379-567 12-180 (188)
172 cd00009 AAA The AAA+ (ATPases 99.2 1.1E-10 2.5E-15 117.2 12.2 144 357-524 1-150 (151)
173 PF06068 TIP49: TIP49 C-termin 99.2 1.6E-10 3.4E-15 131.6 14.1 64 353-417 23-88 (398)
174 PRK09112 DNA polymerase III su 99.2 6.3E-11 1.4E-15 138.4 11.2 190 354-581 23-241 (351)
175 COG1224 TIP49 DNA helicase TIP 99.2 5.3E-10 1.2E-14 125.0 16.9 63 354-417 39-103 (450)
176 PRK05564 DNA polymerase III su 99.1 3.5E-10 7.6E-15 131.0 14.9 156 354-538 4-164 (313)
177 PRK14088 dnaA chromosomal repl 99.1 2.3E-10 5E-15 138.0 12.5 171 382-587 131-312 (440)
178 PRK04132 replication factor C 99.1 4.1E-10 8.9E-15 142.6 15.1 162 385-585 568-736 (846)
179 TIGR00602 rad24 checkpoint pro 99.1 8.1E-10 1.8E-14 136.8 16.5 219 345-585 75-328 (637)
180 PRK08727 hypothetical protein; 99.1 1.1E-09 2.4E-14 121.5 15.8 179 382-613 42-230 (233)
181 KOG0990|consensus 99.1 4.9E-10 1.1E-14 124.2 11.8 202 332-585 28-237 (360)
182 PRK14086 dnaA chromosomal repl 99.1 5.4E-10 1.2E-14 136.6 13.0 168 383-587 316-495 (617)
183 PRK05642 DNA replication initi 99.1 8.8E-10 1.9E-14 122.3 13.5 179 382-612 46-233 (234)
184 PF13177 DNA_pol3_delta2: DNA 99.1 9.2E-11 2E-15 122.7 5.0 145 358-526 1-161 (162)
185 PRK07399 DNA polymerase III su 99.1 1.2E-09 2.6E-14 126.1 14.2 161 354-539 4-195 (314)
186 TIGR02031 BchD-ChlD magnesium 99.1 4.6E-10 1E-14 139.7 11.6 210 382-610 17-254 (589)
187 PRK08058 DNA polymerase III su 99.1 2.4E-10 5.2E-15 133.0 8.4 159 354-536 5-179 (329)
188 PRK07471 DNA polymerase III su 99.1 4.9E-10 1.1E-14 131.6 10.6 161 354-538 19-212 (365)
189 PRK09087 hypothetical protein; 99.1 1.2E-09 2.7E-14 120.3 13.2 171 381-612 44-220 (226)
190 TIGR01817 nifA Nif-specific re 99.1 1.7E-09 3.7E-14 134.3 15.8 209 354-585 196-425 (534)
191 TIGR02974 phageshock_pspF psp 99.0 4.7E-09 1E-13 122.1 16.6 189 381-586 22-231 (329)
192 COG1750 Archaeal serine protea 99.0 3.3E-10 7.2E-15 134.0 6.7 100 689-789 113-213 (579)
193 KOG0736|consensus 99.0 2.9E-09 6.2E-14 128.7 14.5 179 380-585 430-610 (953)
194 PRK05707 DNA polymerase III su 99.0 1.3E-09 2.8E-14 126.3 11.0 140 379-537 20-176 (328)
195 TIGR00368 Mg chelatase-related 99.0 2.8E-09 6E-14 129.7 14.2 156 354-529 192-394 (499)
196 COG1474 CDC6 Cdc6-related prot 99.0 1.6E-08 3.6E-13 118.7 18.5 223 356-609 19-260 (366)
197 PF00308 Bac_DnaA: Bacterial d 99.0 7.6E-09 1.7E-13 113.6 14.7 171 381-587 34-215 (219)
198 PF13541 ChlI: Subunit ChlI of 98.9 7E-10 1.5E-14 109.5 5.3 68 686-753 54-121 (121)
199 PRK05022 anaerobic nitric oxid 98.9 1.2E-08 2.5E-13 125.9 17.2 211 354-586 187-418 (509)
200 PRK15424 propionate catabolism 98.9 2E-08 4.2E-13 123.2 17.5 208 355-586 220-463 (538)
201 PRK06964 DNA polymerase III su 98.9 8.6E-09 1.9E-13 119.7 13.5 153 359-537 6-202 (342)
202 PHA00733 hypothetical protein 98.9 4.8E-10 1E-14 112.1 2.5 83 1133-1221 37-124 (128)
203 PRK06871 DNA polymerase III su 98.9 3.4E-09 7.4E-14 122.1 9.7 155 359-537 7-177 (325)
204 PTZ00111 DNA replication licen 98.9 4.6E-09 1E-13 132.4 11.4 172 351-539 447-656 (915)
205 PRK14087 dnaA chromosomal repl 98.9 6.8E-09 1.5E-13 125.5 12.4 193 382-612 142-346 (450)
206 COG1221 PspF Transcriptional r 98.9 7.8E-09 1.7E-13 120.8 12.4 191 379-587 99-308 (403)
207 PRK11608 pspF phage shock prot 98.9 2.8E-08 6.1E-13 115.7 16.8 212 354-586 6-238 (326)
208 smart00382 AAA ATPases associa 98.9 4.6E-09 9.9E-14 104.4 8.9 129 381-520 2-140 (148)
209 PRK11388 DNA-binding transcrip 98.9 2.5E-08 5.4E-13 126.5 17.1 225 355-611 326-568 (638)
210 KOG1942|consensus 98.9 2.2E-08 4.9E-13 109.1 13.3 61 353-417 37-102 (456)
211 COG2204 AtoC Response regulato 98.8 2.8E-08 6.1E-13 118.1 14.8 216 352-585 139-371 (464)
212 PRK10820 DNA-binding transcrip 98.8 6.3E-08 1.4E-12 119.6 17.6 210 355-586 205-435 (520)
213 PLN03086 PRLI-interacting fact 98.8 7.4E-09 1.6E-13 125.0 8.9 74 1137-1218 479-562 (567)
214 PRK15429 formate hydrogenlyase 98.8 8.7E-08 1.9E-12 122.5 18.9 213 355-586 377-607 (686)
215 TIGR02329 propionate_PrpR prop 98.8 5.7E-08 1.2E-12 119.2 16.1 208 355-586 213-448 (526)
216 PRK06090 DNA polymerase III su 98.8 4.4E-08 9.5E-13 112.8 14.2 154 359-536 8-177 (319)
217 PRK08769 DNA polymerase III su 98.8 1.3E-08 2.9E-13 117.1 9.6 153 359-536 9-182 (319)
218 COG1239 ChlI Mg-chelatase subu 98.8 5.9E-08 1.3E-12 112.4 13.5 168 354-539 17-232 (423)
219 PF05673 DUF815: Protein of un 98.8 9.3E-08 2E-12 104.6 14.3 184 350-574 23-212 (249)
220 COG0542 clpA ATP-binding subun 98.7 2E-07 4.4E-12 116.3 18.4 231 289-565 117-366 (786)
221 PRK07993 DNA polymerase III su 98.7 6E-08 1.3E-12 112.9 13.1 138 379-535 22-176 (334)
222 PHA02768 hypothetical protein; 98.7 2.2E-09 4.9E-14 89.4 0.9 44 1136-1183 5-48 (55)
223 KOG0478|consensus 98.7 5E-08 1.1E-12 117.0 12.0 159 352-522 427-607 (804)
224 COG3829 RocR Transcriptional r 98.7 1E-07 2.3E-12 113.1 14.6 188 380-585 267-476 (560)
225 COG3604 FhlA Transcriptional r 98.7 8.2E-08 1.8E-12 112.5 13.3 213 354-587 223-455 (550)
226 PLN03086 PRLI-interacting fact 98.7 1.4E-08 3E-13 122.7 6.9 107 787-906 449-565 (567)
227 COG5271 MDN1 AAA ATPase contai 98.7 7.1E-08 1.5E-12 121.9 12.5 155 380-541 1542-1704(4600)
228 KOG0735|consensus 98.7 1.4E-07 3E-12 113.4 14.1 229 354-612 408-646 (952)
229 PHA00733 hypothetical protein 98.7 1.2E-08 2.6E-13 102.1 4.2 83 818-906 37-124 (128)
230 KOG2170|consensus 98.7 5.6E-08 1.2E-12 107.3 9.8 156 342-516 70-235 (344)
231 COG0606 Predicted ATPase with 98.7 2.2E-08 4.9E-13 117.3 7.1 151 354-527 179-380 (490)
232 PRK09862 putative ATP-dependen 98.7 3.3E-08 7.2E-13 119.9 7.9 150 354-526 191-388 (506)
233 COG1241 MCM2 Predicted ATPase 98.7 5.8E-08 1.3E-12 120.1 9.9 155 351-523 283-465 (682)
234 PRK10923 glnG nitrogen regulat 98.6 3.1E-07 6.8E-12 112.4 15.5 210 355-586 139-369 (469)
235 PF00158 Sigma54_activat: Sigm 98.6 1.9E-07 4.1E-12 98.3 11.3 148 358-523 3-167 (168)
236 TIGR02915 PEP_resp_reg putativ 98.6 5.2E-07 1.1E-11 109.7 16.7 187 382-586 163-370 (445)
237 KOG2035|consensus 98.6 3.6E-07 7.9E-12 99.7 12.8 187 356-582 15-227 (351)
238 COG4930 Predicted ATP-dependen 98.6 4.2E-07 9.2E-12 102.7 13.7 103 661-775 567-671 (683)
239 COG0593 DnaA ATPase involved i 98.6 3.3E-07 7.2E-12 107.7 13.4 176 381-588 113-294 (408)
240 PRK15455 PrkA family serine pr 98.6 5.2E-08 1.1E-12 117.3 6.4 57 355-413 77-136 (644)
241 PRK12377 putative replication 98.6 1.6E-07 3.5E-12 104.6 9.7 132 358-518 82-222 (248)
242 PRK08699 DNA polymerase III su 98.6 2.1E-07 4.5E-12 108.1 10.4 139 379-536 19-182 (325)
243 PRK08116 hypothetical protein; 98.6 2.4E-07 5.3E-12 104.8 10.7 124 380-528 113-251 (268)
244 KOG1969|consensus 98.5 6.1E-07 1.3E-11 108.7 13.5 167 378-577 323-507 (877)
245 PRK11361 acetoacetate metaboli 98.5 9.7E-07 2.1E-11 107.7 15.5 187 381-585 166-373 (457)
246 PHA02768 hypothetical protein; 98.5 2.6E-08 5.6E-13 83.2 0.9 44 1164-1213 5-48 (55)
247 PRK15115 response regulator Gl 98.5 1.2E-06 2.7E-11 106.4 15.9 188 381-586 157-365 (444)
248 TIGR03015 pepcterm_ATPase puta 98.5 7.8E-06 1.7E-10 92.4 20.4 200 381-611 43-263 (269)
249 PRK13406 bchD magnesium chelat 98.5 4.8E-07 1E-11 112.1 11.2 206 382-610 26-246 (584)
250 PRK08181 transposase; Validate 98.5 2.8E-07 6E-12 104.0 7.8 122 380-527 105-243 (269)
251 TIGR01818 ntrC nitrogen regula 98.5 1.4E-06 3E-11 106.5 14.6 209 356-586 136-365 (463)
252 PF13173 AAA_14: AAA domain 98.5 5.7E-07 1.2E-11 90.3 8.9 118 381-530 2-126 (128)
253 PRK05917 DNA polymerase III su 98.4 5.2E-07 1.1E-11 102.1 9.3 123 379-526 17-154 (290)
254 KOG2680|consensus 98.4 3.8E-06 8.2E-11 92.4 15.4 73 493-577 314-398 (454)
255 PF03215 Rad17: Rad17 cell cyc 98.4 3.5E-06 7.5E-11 103.2 16.1 203 359-585 24-268 (519)
256 PRK07276 DNA polymerase III su 98.4 7E-07 1.5E-11 101.5 9.3 149 359-534 7-170 (290)
257 COG1484 DnaC DNA replication p 98.4 1.3E-06 2.7E-11 98.2 11.2 151 331-519 68-231 (254)
258 PF00493 MCM: MCM2/3/5 family 98.4 7.8E-08 1.7E-12 112.1 1.3 178 350-543 20-224 (331)
259 PHA00729 NTP-binding motif con 98.4 2.4E-06 5.2E-11 93.3 12.5 28 382-409 18-45 (226)
260 PRK07952 DNA replication prote 98.4 1.2E-06 2.7E-11 97.5 9.8 131 358-518 80-221 (244)
261 PF13465 zf-H2C2_2: Zinc-finge 98.3 2E-07 4.4E-12 66.7 1.8 25 1181-1207 1-25 (26)
262 COG3480 SdrC Predicted secrete 98.3 2E-07 4.3E-12 103.3 2.5 95 688-782 232-337 (342)
263 PF00910 RNA_helicase: RNA hel 98.3 5.3E-07 1.2E-11 87.8 5.2 104 384-506 1-107 (107)
264 PRK06526 transposase; Provisio 98.3 3.2E-06 6.9E-11 95.0 11.6 90 380-478 97-187 (254)
265 PF12775 AAA_7: P-loop contain 98.3 1.7E-06 3.6E-11 98.2 8.9 199 381-586 33-253 (272)
266 KOG0482|consensus 98.3 1.3E-06 2.9E-11 101.6 7.9 163 348-521 336-519 (721)
267 PRK06921 hypothetical protein; 98.3 2.2E-06 4.7E-11 97.0 9.0 88 361-459 97-188 (266)
268 PRK06835 DNA replication prote 98.3 7.4E-06 1.6E-10 95.2 13.5 142 359-527 165-318 (329)
269 PF13465 zf-H2C2_2: Zinc-finge 98.3 2.2E-07 4.8E-12 66.5 0.4 26 1151-1178 1-26 (26)
270 PRK07132 DNA polymerase III su 98.2 8.9E-06 1.9E-10 93.3 13.5 138 360-536 2-159 (299)
271 PRK05818 DNA polymerase III su 98.2 1.2E-06 2.7E-11 97.2 6.2 128 380-526 6-147 (261)
272 PRK12723 flagellar biosynthesi 98.2 2E-05 4.4E-10 93.2 16.6 138 281-460 109-266 (388)
273 KOG0477|consensus 98.2 5E-06 1.1E-10 99.0 10.8 156 353-522 448-627 (854)
274 PRK08939 primosomal protein Dn 98.2 5.4E-06 1.2E-10 95.6 10.9 91 359-460 136-229 (306)
275 COG5271 MDN1 AAA ATPase contai 98.2 9.2E-06 2E-10 103.8 13.0 143 382-536 889-1044(4600)
276 PF06309 Torsin: Torsin; Inte 98.2 3.3E-06 7.1E-11 83.6 6.9 64 342-405 13-77 (127)
277 PRK10365 transcriptional regul 98.2 2.8E-05 6.1E-10 94.5 16.1 188 380-585 161-369 (441)
278 PF01695 IstB_IS21: IstB-like 98.2 1.4E-06 2.9E-11 92.8 4.0 71 380-459 46-119 (178)
279 PHA00616 hypothetical protein 98.1 4.8E-07 1E-11 72.1 -0.4 32 1136-1167 1-32 (44)
280 KOG0741|consensus 98.1 1.9E-05 4.2E-10 92.8 12.3 69 381-461 538-611 (744)
281 PF13401 AAA_22: AAA domain; P 98.1 3.7E-06 8E-11 84.1 5.1 80 380-461 3-100 (131)
282 TIGR03499 FlhF flagellar biosy 98.1 8.1E-05 1.7E-09 85.2 16.6 132 281-456 134-280 (282)
283 PRK09183 transposase/IS protei 98.1 8.4E-06 1.8E-10 92.0 8.3 90 379-478 100-192 (259)
284 COG0464 SpoVK ATPases of the A 98.0 1.4E-05 3.1E-10 98.6 10.5 144 375-535 12-159 (494)
285 KOG3993|consensus 98.0 2.6E-06 5.7E-11 96.8 3.1 113 791-907 267-382 (500)
286 PF14532 Sigma54_activ_2: Sigm 98.0 9.2E-06 2E-10 82.7 6.7 59 381-461 21-82 (138)
287 KOG0480|consensus 98.0 5.4E-06 1.2E-10 99.3 5.3 173 352-537 343-540 (764)
288 PHA02624 large T antigen; Prov 98.0 0.00013 2.8E-09 89.1 17.1 125 374-528 424-563 (647)
289 PF05621 TniB: Bacterial TniB 98.0 0.00016 3.4E-09 82.0 16.6 171 347-531 27-218 (302)
290 COG2607 Predicted ATPase (AAA+ 98.0 8.1E-05 1.7E-09 80.5 13.2 180 354-574 60-244 (287)
291 PRK05703 flhF flagellar biosyn 98.0 0.00023 5E-09 85.8 18.7 138 280-459 160-310 (424)
292 PF05729 NACHT: NACHT domain 98.0 3.8E-05 8.1E-10 79.6 10.2 147 382-539 1-163 (166)
293 KOG3993|consensus 97.9 1.7E-06 3.7E-11 98.3 -0.3 138 761-906 266-483 (500)
294 PHA00732 hypothetical protein 97.9 4.5E-06 9.8E-11 76.3 2.5 50 1136-1193 1-51 (79)
295 PF01637 Arch_ATPase: Archaeal 97.9 3.1E-05 6.7E-10 84.8 9.6 146 380-539 19-204 (234)
296 PF12774 AAA_6: Hydrolytic ATP 97.9 2.1E-05 4.6E-10 87.0 7.9 172 383-583 34-222 (231)
297 KOG1514|consensus 97.9 0.00014 3E-09 88.9 15.0 184 357-570 399-609 (767)
298 KOG1970|consensus 97.9 0.00012 2.5E-09 87.2 13.3 39 375-413 104-142 (634)
299 KOG0481|consensus 97.9 0.00015 3.2E-09 85.2 13.7 171 352-541 329-529 (729)
300 COG3283 TyrR Transcriptional r 97.9 0.00014 3E-09 82.3 12.8 186 382-585 228-429 (511)
301 COG1618 Predicted nucleotide k 97.8 5.4E-05 1.2E-09 77.4 8.2 76 383-460 7-112 (179)
302 PRK14700 recombination factor 97.8 5.6E-05 1.2E-09 85.2 8.9 117 493-621 4-122 (300)
303 PRK14722 flhF flagellar biosyn 97.8 0.00027 5.8E-09 83.3 14.7 27 379-405 135-161 (374)
304 PRK11889 flhF flagellar biosyn 97.8 0.00047 1E-08 80.9 16.3 80 380-459 240-331 (436)
305 PF00931 NB-ARC: NB-ARC domain 97.8 0.00014 3.1E-09 82.9 11.9 156 360-541 2-172 (287)
306 PF05272 VirE: Virulence-assoc 97.8 6.4E-05 1.4E-09 81.3 8.0 166 329-525 1-169 (198)
307 PHA00732 hypothetical protein 97.7 1.4E-05 3.1E-10 73.0 2.2 49 1164-1222 1-50 (79)
308 COG5189 SFP1 Putative transcri 97.7 9.4E-06 2E-10 89.1 1.1 55 1161-1217 346-419 (423)
309 PHA00616 hypothetical protein 97.7 8.9E-06 1.9E-10 65.0 0.6 33 1164-1198 1-33 (44)
310 PRK12726 flagellar biosynthesi 97.7 0.00031 6.8E-09 82.0 13.4 134 285-459 146-296 (407)
311 PF03969 AFG1_ATPase: AFG1-lik 97.7 8.5E-05 1.8E-09 87.5 8.1 132 377-529 58-204 (362)
312 PRK06995 flhF flagellar biosyn 97.7 0.0028 6E-08 77.1 20.8 83 281-405 196-280 (484)
313 PF02190 LON: ATP-dependent pr 97.6 7.3E-05 1.6E-09 80.7 6.4 105 124-233 88-205 (205)
314 PF08298 AAA_PrkA: PrkA AAA do 97.6 8E-05 1.7E-09 85.8 6.3 58 350-407 57-114 (358)
315 KOG1968|consensus 97.6 0.00019 4.1E-09 92.2 10.3 196 354-584 321-535 (871)
316 COG5048 FOG: Zn-finger [Genera 97.6 0.00069 1.5E-08 81.0 14.0 77 1135-1211 288-368 (467)
317 PRK12724 flagellar biosynthesi 97.6 0.0033 7.1E-08 74.8 18.9 27 379-405 221-247 (432)
318 cd03216 ABC_Carb_Monos_I This 97.5 0.00018 3.9E-09 75.4 7.3 126 378-521 23-155 (163)
319 PF13207 AAA_17: AAA domain; P 97.5 7.5E-05 1.6E-09 73.7 3.5 31 383-413 1-31 (121)
320 KOG2227|consensus 97.5 0.0029 6.4E-08 74.6 16.6 231 333-596 126-382 (529)
321 cd01120 RecA-like_NTPases RecA 97.5 0.00033 7.2E-09 72.0 8.1 33 383-415 1-36 (165)
322 PRK14723 flhF flagellar biosyn 97.5 0.0036 7.9E-08 79.5 18.6 135 281-459 125-274 (767)
323 cd01128 rho_factor Transcripti 97.4 0.00021 4.5E-09 80.1 6.6 34 375-408 10-43 (249)
324 KOG1808|consensus 97.4 0.00058 1.2E-08 92.2 11.5 145 382-535 441-595 (1856)
325 PRK14721 flhF flagellar biosyn 97.4 0.0035 7.5E-08 75.1 16.7 79 284-404 135-214 (420)
326 KOG1051|consensus 97.4 0.0019 4.2E-08 82.6 15.2 206 290-536 134-360 (898)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00035 7.5E-09 71.8 7.2 115 378-521 23-140 (144)
328 PRK04296 thymidine kinase; Pro 97.4 0.00052 1.1E-08 73.9 8.7 25 381-405 2-26 (190)
329 KOG0479|consensus 97.4 0.0005 1.1E-08 82.0 8.9 153 352-521 299-478 (818)
330 COG1116 TauB ABC-type nitrate/ 97.3 0.00031 6.7E-09 77.2 6.5 29 378-406 26-54 (248)
331 PRK00131 aroK shikimate kinase 97.3 0.00017 3.6E-09 75.7 4.4 34 380-413 3-36 (175)
332 COG1419 FlhF Flagellar GTP-bin 97.3 0.00077 1.7E-08 79.0 10.0 27 379-405 201-228 (407)
333 PRK09862 putative ATP-dependen 97.3 0.00023 4.9E-09 87.0 5.7 95 684-784 72-168 (506)
334 COG1373 Predicted ATPase (AAA+ 97.3 0.0031 6.8E-08 75.7 15.2 118 383-534 39-162 (398)
335 PLN03210 Resistant to P. syrin 97.3 0.0014 2.9E-08 89.2 13.6 52 354-409 184-235 (1153)
336 PRK14974 cell division protein 97.3 0.001 2.3E-08 77.6 10.7 28 379-406 138-165 (336)
337 PRK12727 flagellar biosynthesi 97.3 0.0015 3.3E-08 79.4 12.1 28 378-405 347-374 (559)
338 TIGR00064 ftsY signal recognit 97.3 0.0055 1.2E-07 69.8 16.0 91 280-406 4-97 (272)
339 PF03266 NTPase_1: NTPase; In 97.3 0.00064 1.4E-08 71.8 7.8 25 384-408 2-29 (168)
340 PHA02774 E1; Provisional 97.3 0.00091 2E-08 81.6 10.0 124 375-526 428-555 (613)
341 COG5189 SFP1 Putative transcri 97.3 0.00011 2.4E-09 81.0 1.9 73 819-903 347-420 (423)
342 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.00043 9.4E-09 71.9 6.1 38 379-416 23-60 (157)
343 cd03228 ABCC_MRP_Like The MRP 97.2 0.00042 9.1E-09 73.2 6.0 29 378-406 25-53 (171)
344 PRK12337 2-phosphoglycerate ki 97.2 0.0017 3.6E-08 77.9 11.5 148 234-409 131-283 (475)
345 cd03214 ABC_Iron-Siderophores_ 97.2 0.00043 9.3E-09 73.8 5.7 29 378-406 22-50 (180)
346 COG0703 AroK Shikimate kinase 97.2 0.00024 5.2E-09 74.4 3.4 32 382-413 3-34 (172)
347 PRK10416 signal recognition pa 97.2 0.0069 1.5E-07 70.5 15.6 119 246-406 18-139 (318)
348 cd00227 CPT Chloramphenicol (C 97.2 0.00028 6.1E-09 74.8 3.8 35 380-414 1-35 (175)
349 PRK09376 rho transcription ter 97.2 0.00022 4.8E-09 83.5 3.2 33 376-408 164-196 (416)
350 TIGR01425 SRP54_euk signal rec 97.2 0.0066 1.4E-07 72.8 15.6 36 379-414 98-136 (429)
351 cd03246 ABCC_Protease_Secretio 97.2 0.00053 1.2E-08 72.6 5.6 28 379-406 26-53 (173)
352 COG3854 SpoIIIAA ncharacterize 97.2 0.00089 1.9E-08 72.1 7.1 24 384-407 140-163 (308)
353 COG3284 AcoR Transcriptional a 97.1 0.0015 3.3E-08 79.8 9.9 184 383-585 338-537 (606)
354 PRK00771 signal recognition pa 97.1 0.0066 1.4E-07 73.3 15.4 28 379-406 93-120 (437)
355 COG1936 Predicted nucleotide k 97.1 0.00057 1.2E-08 71.0 5.3 29 383-412 2-30 (180)
356 TIGR01613 primase_Cterm phage/ 97.1 0.0012 2.6E-08 76.4 8.5 183 313-527 17-205 (304)
357 PRK13537 nodulation ABC transp 97.1 0.00063 1.4E-08 78.8 6.0 29 378-406 30-58 (306)
358 PRK00625 shikimate kinase; Pro 97.1 0.00039 8.4E-09 73.7 3.9 31 383-413 2-32 (173)
359 PRK03839 putative kinase; Prov 97.1 0.00041 8.8E-09 73.8 3.8 30 383-412 2-31 (180)
360 TIGR01188 drrA daunorubicin re 97.1 0.0007 1.5E-08 78.3 6.0 28 378-405 16-43 (302)
361 PRK13947 shikimate kinase; Pro 97.1 0.00043 9.2E-09 72.8 3.8 31 383-413 3-33 (171)
362 cd03223 ABCD_peroxisomal_ALDP 97.1 0.0013 2.8E-08 69.3 7.3 29 378-406 24-52 (166)
363 PRK08118 topology modulation p 97.1 0.00047 1E-08 72.7 4.0 31 383-413 3-33 (167)
364 PRK06581 DNA polymerase III su 97.0 0.0019 4.1E-08 70.9 8.6 138 381-541 15-163 (263)
365 COG1131 CcmA ABC-type multidru 97.0 0.00077 1.7E-08 77.6 6.0 28 379-406 29-56 (293)
366 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0015 3.3E-08 69.5 7.7 28 379-406 23-50 (177)
367 PRK06762 hypothetical protein; 97.0 0.0011 2.3E-08 69.6 6.0 33 381-413 2-34 (166)
368 cd03233 ABC_PDR_domain1 The pl 97.0 0.0015 3.2E-08 71.1 7.3 29 378-406 30-58 (202)
369 cd00464 SK Shikimate kinase (S 97.0 0.00057 1.2E-08 70.3 3.9 30 384-413 2-31 (154)
370 COG1126 GlnQ ABC-type polar am 97.0 0.0017 3.7E-08 69.8 7.4 27 378-404 25-51 (240)
371 PRK13536 nodulation factor exp 97.0 0.00097 2.1E-08 78.4 6.1 29 378-406 64-92 (340)
372 PRK07261 topology modulation p 97.0 0.0011 2.3E-08 70.3 5.8 31 383-413 2-32 (171)
373 TIGR00767 rho transcription te 97.0 0.0016 3.5E-08 76.8 7.9 32 377-408 164-195 (415)
374 PF00096 zf-C2H2: Zinc finger, 97.0 0.00011 2.4E-09 50.9 -1.0 23 1165-1189 1-23 (23)
375 PRK10867 signal recognition pa 97.0 0.016 3.4E-07 70.0 16.4 37 379-415 98-138 (433)
376 PF05605 zf-Di19: Drought indu 97.0 0.00039 8.5E-09 59.1 1.9 47 1137-1188 3-51 (54)
377 KOG3347|consensus 97.0 0.00065 1.4E-08 68.6 3.6 34 380-413 6-39 (176)
378 PF10236 DAP3: Mitochondrial r 96.9 0.01 2.2E-07 69.0 14.0 39 376-414 18-57 (309)
379 cd01131 PilT Pilus retraction 96.9 0.0013 2.9E-08 71.3 6.3 72 383-457 3-83 (198)
380 COG1120 FepC ABC-type cobalami 96.9 0.0017 3.6E-08 72.6 7.2 29 378-406 25-53 (258)
381 PRK14530 adenylate kinase; Pro 96.9 0.00076 1.7E-08 74.0 4.4 31 381-411 3-33 (215)
382 cd02020 CMPK Cytidine monophos 96.9 0.00068 1.5E-08 69.0 3.6 31 383-413 1-31 (147)
383 COG3842 PotA ABC-type spermidi 96.9 0.0006 1.3E-08 79.4 3.5 28 378-405 28-55 (352)
384 cd03238 ABC_UvrA The excision 96.9 0.0013 2.9E-08 69.9 5.8 26 378-403 18-43 (176)
385 cd03247 ABCC_cytochrome_bd The 96.9 0.0022 4.8E-08 68.2 7.5 29 378-406 25-53 (178)
386 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0017 3.7E-08 70.4 6.8 22 382-403 29-50 (200)
387 PRK08233 hypothetical protein; 96.9 0.0019 4.2E-08 68.4 7.0 27 380-406 2-28 (182)
388 PF13671 AAA_33: AAA domain; P 96.9 0.00083 1.8E-08 68.2 4.0 30 383-414 1-30 (143)
389 PRK13949 shikimate kinase; Pro 96.9 0.00077 1.7E-08 71.3 3.7 31 383-413 3-33 (169)
390 PRK13948 shikimate kinase; Pro 96.9 0.00093 2E-08 71.4 4.4 35 379-413 8-42 (182)
391 PRK13695 putative NTPase; Prov 96.9 0.0028 6.1E-08 67.1 8.1 23 383-405 2-24 (174)
392 PRK08154 anaerobic benzoate ca 96.9 0.0032 6.9E-08 73.1 9.0 38 376-413 128-165 (309)
393 TIGR02688 conserved hypothetic 96.9 0.0027 5.8E-08 75.2 8.3 25 380-404 208-232 (449)
394 COG1124 DppF ABC-type dipeptid 96.9 0.0025 5.3E-08 69.8 7.4 29 378-406 30-58 (252)
395 TIGR01618 phage_P_loop phage n 96.8 0.00083 1.8E-08 73.7 3.8 22 381-402 12-33 (220)
396 TIGR03258 PhnT 2-aminoethylpho 96.8 0.0014 3E-08 77.6 5.9 27 379-405 29-55 (362)
397 PF01745 IPT: Isopentenyl tran 96.8 0.00097 2.1E-08 71.6 4.1 53 382-434 2-64 (233)
398 TIGR03522 GldA_ABC_ATP gliding 96.8 0.0015 3.3E-08 75.5 5.9 28 378-405 25-52 (301)
399 cd02021 GntK Gluconate kinase 96.8 0.00082 1.8E-08 69.1 3.3 29 383-411 1-29 (150)
400 PRK11650 ugpC glycerol-3-phosp 96.8 0.0015 3.3E-08 77.2 6.0 28 379-406 28-55 (356)
401 PRK11607 potG putrescine trans 96.8 0.0015 3.2E-08 77.9 5.9 27 379-405 43-69 (377)
402 cd01124 KaiC KaiC is a circadi 96.8 0.0038 8.2E-08 66.4 8.3 32 383-414 1-35 (187)
403 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.00093 2E-08 71.1 3.6 33 383-417 1-33 (183)
404 PRK05800 cobU adenosylcobinami 96.8 0.003 6.6E-08 66.8 7.4 78 382-459 2-87 (170)
405 PRK06696 uridine kinase; Valid 96.8 0.0026 5.7E-08 70.2 7.3 42 378-419 19-63 (223)
406 PF00096 zf-C2H2: Zinc finger, 96.8 0.0009 1.9E-08 46.3 2.2 23 1195-1219 1-23 (23)
407 COG0563 Adk Adenylate kinase a 96.8 0.0018 3.8E-08 69.1 5.5 31 383-415 2-32 (178)
408 cd03215 ABC_Carb_Monos_II This 96.8 0.0024 5.1E-08 68.2 6.5 28 379-406 24-51 (182)
409 TIGR01288 nodI ATP-binding ABC 96.8 0.0018 4E-08 74.9 6.0 28 378-405 27-54 (303)
410 TIGR01360 aden_kin_iso1 adenyl 96.8 0.0014 3E-08 69.9 4.5 30 381-410 3-32 (188)
411 COG5048 FOG: Zn-finger [Genera 96.7 0.0096 2.1E-07 71.2 12.3 64 1163-1228 288-355 (467)
412 PRK00409 recombination and DNA 96.7 0.026 5.7E-07 73.3 16.8 25 380-404 326-350 (782)
413 cd03225 ABC_cobalt_CbiO_domain 96.7 0.002 4.3E-08 70.3 5.7 28 378-405 24-51 (211)
414 cd03226 ABC_cobalt_CbiO_domain 96.7 0.0021 4.5E-08 69.9 5.9 27 379-405 24-50 (205)
415 TIGR00959 ffh signal recogniti 96.7 0.02 4.3E-07 69.1 14.6 36 379-414 97-136 (428)
416 COG4650 RtcR Sigma54-dependent 96.7 0.0047 1E-07 68.3 8.1 90 382-478 209-308 (531)
417 PRK05057 aroK shikimate kinase 96.7 0.0015 3.3E-08 69.2 4.3 33 381-413 4-36 (172)
418 PRK13539 cytochrome c biogenes 96.7 0.0025 5.4E-08 69.5 6.2 28 378-405 25-52 (207)
419 PRK14532 adenylate kinase; Pro 96.7 0.0012 2.7E-08 70.6 3.6 32 384-417 3-34 (188)
420 PRK03731 aroL shikimate kinase 96.7 0.0015 3.3E-08 68.8 4.2 32 382-413 3-34 (171)
421 PRK09452 potA putrescine/sperm 96.7 0.0019 4.1E-08 76.8 5.5 28 379-406 38-65 (375)
422 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0026 5.7E-08 67.3 5.8 28 379-406 24-51 (173)
423 COG1102 Cmk Cytidylate kinase 96.7 0.0015 3.2E-08 67.1 3.6 29 383-411 2-30 (179)
424 PRK08533 flagellar accessory p 96.7 0.0063 1.4E-07 67.6 9.0 38 377-414 20-60 (230)
425 PRK06217 hypothetical protein; 96.6 0.0015 3.2E-08 69.9 3.8 31 383-413 3-33 (183)
426 PRK13946 shikimate kinase; Pro 96.6 0.0016 3.6E-08 69.6 4.1 34 380-413 9-42 (184)
427 cd03278 ABC_SMC_barmotin Barmo 96.6 0.0055 1.2E-07 66.4 8.2 25 380-405 22-46 (197)
428 cd03237 ABC_RNaseL_inhibitor_d 96.6 0.0033 7.2E-08 70.6 6.6 27 379-405 23-49 (246)
429 PRK11432 fbpC ferric transport 96.6 0.003 6.6E-08 74.5 6.6 29 378-406 29-57 (351)
430 PF14516 AAA_35: AAA-like doma 96.6 0.01 2.3E-07 69.6 10.9 58 353-417 9-70 (331)
431 PRK04040 adenylate kinase; Pro 96.6 0.0035 7.6E-08 67.4 6.5 34 381-416 2-37 (188)
432 cd03283 ABC_MutS-like MutS-lik 96.6 0.0041 8.8E-08 67.6 7.0 24 381-404 25-48 (199)
433 TIGR03574 selen_PSTK L-seryl-t 96.6 0.0024 5.1E-08 71.8 5.2 30 384-413 2-34 (249)
434 PRK14527 adenylate kinase; Pro 96.6 0.0016 3.5E-08 70.1 3.7 32 379-410 4-35 (191)
435 cd03229 ABC_Class3 This class 96.6 0.0052 1.1E-07 65.4 7.5 28 379-406 24-51 (178)
436 PF00519 PPV_E1_C: Papillomavi 96.6 0.0061 1.3E-07 70.9 8.5 44 367-410 246-291 (432)
437 PRK04220 2-phosphoglycerate ki 96.6 0.0092 2E-07 68.3 9.8 41 369-409 80-120 (301)
438 TIGR02237 recomb_radB DNA repa 96.6 0.0047 1E-07 67.3 7.3 41 376-416 7-50 (209)
439 TIGR01313 therm_gnt_kin carboh 96.6 0.0015 3.3E-08 68.2 3.2 27 384-410 1-27 (163)
440 PRK14531 adenylate kinase; Pro 96.6 0.002 4.3E-08 68.9 4.1 33 383-417 4-36 (183)
441 TIGR02858 spore_III_AA stage I 96.6 0.0039 8.5E-08 70.8 6.6 27 382-408 112-138 (270)
442 PRK12608 transcription termina 96.5 0.0034 7.3E-08 73.7 6.2 32 376-407 128-159 (380)
443 PRK06067 flagellar accessory p 96.5 0.011 2.4E-07 65.6 10.2 40 376-415 20-62 (234)
444 cd01130 VirB11-like_ATPase Typ 96.5 0.0068 1.5E-07 65.0 8.0 27 380-406 24-50 (186)
445 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0032 7E-08 63.7 5.1 30 379-408 20-49 (133)
446 PTZ00088 adenylate kinase 1; P 96.5 0.0023 5E-08 70.9 4.5 35 382-418 7-41 (229)
447 PF05707 Zot: Zonular occluden 96.5 0.0053 1.2E-07 66.3 7.2 121 383-520 2-139 (193)
448 PF13604 AAA_30: AAA domain; P 96.5 0.0042 9.2E-08 67.3 6.4 33 381-413 18-53 (196)
449 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0065 1.4E-07 68.9 8.2 76 382-458 81-159 (264)
450 TIGR01420 pilT_fam pilus retra 96.5 0.0052 1.1E-07 72.4 7.6 75 381-458 122-205 (343)
451 PLN02199 shikimate kinase 96.5 0.0028 6.1E-08 72.0 5.0 34 380-413 101-134 (303)
452 COG1118 CysA ABC-type sulfate/ 96.5 0.0025 5.4E-08 71.8 4.5 47 360-406 6-53 (345)
453 cd01428 ADK Adenylate kinase ( 96.5 0.0019 4.1E-08 69.2 3.6 28 384-411 2-29 (194)
454 cd03269 ABC_putative_ATPase Th 96.5 0.0045 9.7E-08 67.5 6.5 27 379-405 24-50 (210)
455 COG4586 ABC-type uncharacteriz 96.5 0.0059 1.3E-07 67.7 7.2 36 371-406 39-75 (325)
456 cd03217 ABC_FeS_Assembly ABC-t 96.5 0.0034 7.3E-08 68.1 5.4 27 379-405 24-50 (200)
457 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.5 0.0045 9.7E-08 68.4 6.4 28 378-405 45-72 (224)
458 cd03268 ABC_BcrA_bacitracin_re 96.5 0.004 8.7E-08 67.8 6.0 27 379-405 24-50 (208)
459 PLN02200 adenylate kinase fami 96.5 0.002 4.4E-08 71.7 3.6 38 379-418 41-78 (234)
460 PRK13541 cytochrome c biogenes 96.5 0.0081 1.7E-07 64.8 8.1 27 379-405 24-50 (195)
461 PRK10536 hypothetical protein; 96.5 0.0099 2.1E-07 66.5 8.8 69 329-413 38-108 (262)
462 PRK06547 hypothetical protein; 96.4 0.0026 5.7E-08 67.4 4.1 34 379-412 13-46 (172)
463 PF00448 SRP54: SRP54-type pro 96.4 0.0063 1.4E-07 65.9 7.2 78 381-458 1-93 (196)
464 PF12756 zf-C2H2_2: C2H2 type 96.4 0.0018 3.9E-08 61.5 2.6 72 1138-1219 1-73 (100)
465 TIGR01186 proV glycine betaine 96.4 0.005 1.1E-07 72.9 6.8 28 378-405 16-43 (363)
466 TIGR01069 mutS2 MutS2 family p 96.4 0.015 3.2E-07 75.3 11.6 76 382-459 323-413 (771)
467 PRK05439 pantothenate kinase; 96.4 0.0076 1.7E-07 69.5 8.0 82 304-407 31-112 (311)
468 KOG2004|consensus 96.4 0.0015 3.3E-08 80.0 2.3 125 935-1070 728-852 (906)
469 COG1125 OpuBA ABC-type proline 96.4 0.0086 1.9E-07 65.9 7.8 29 378-406 24-52 (309)
470 PRK13632 cbiO cobalt transport 96.4 0.0054 1.2E-07 69.8 6.7 28 378-405 32-59 (271)
471 TIGR02788 VirB11 P-type DNA tr 96.4 0.007 1.5E-07 70.3 7.7 76 380-458 143-228 (308)
472 PF13191 AAA_16: AAA ATPase do 96.4 0.0024 5.2E-08 67.5 3.5 56 357-415 3-61 (185)
473 PRK05541 adenylylsulfate kinas 96.4 0.0036 7.9E-08 66.3 4.8 30 379-408 5-34 (176)
474 COG4555 NatA ABC-type Na+ tran 96.4 0.011 2.3E-07 63.1 8.0 29 378-406 25-53 (245)
475 cd03213 ABCG_EPDR ABCG transpo 96.4 0.006 1.3E-07 65.9 6.4 28 378-405 32-59 (194)
476 cd03263 ABC_subfamily_A The AB 96.4 0.0057 1.2E-07 67.2 6.4 27 379-405 26-52 (220)
477 cd03281 ABC_MSH5_euk MutS5 hom 96.4 0.0049 1.1E-07 67.7 5.8 23 381-403 29-51 (213)
478 PF13479 AAA_24: AAA domain 96.4 0.0061 1.3E-07 66.9 6.5 74 381-460 3-80 (213)
479 COG1121 ZnuC ABC-type Mn/Zn tr 96.3 0.0077 1.7E-07 67.2 7.1 29 378-406 27-55 (254)
480 cd03301 ABC_MalK_N The N-termi 96.3 0.0067 1.5E-07 66.3 6.7 28 378-405 23-50 (213)
481 TIGR03740 galliderm_ABC gallid 96.3 0.005 1.1E-07 67.8 5.7 27 379-405 24-50 (223)
482 cd03293 ABC_NrtD_SsuB_transpor 96.3 0.0065 1.4E-07 66.8 6.5 27 379-405 28-54 (220)
483 cd02027 APSK Adenosine 5'-phos 96.3 0.0046 1E-07 63.9 5.0 31 383-413 1-34 (149)
484 PRK14528 adenylate kinase; Pro 96.3 0.0033 7.2E-08 67.5 4.0 33 383-417 3-35 (186)
485 PRK13543 cytochrome c biogenes 96.3 0.0076 1.7E-07 66.1 6.9 28 378-405 34-61 (214)
486 PF05605 zf-Di19: Drought indu 96.3 0.0027 5.9E-08 53.9 2.6 51 1164-1221 2-54 (54)
487 PRK11247 ssuB aliphatic sulfon 96.3 0.007 1.5E-07 68.4 6.7 28 378-405 35-62 (257)
488 PRK04182 cytidylate kinase; Pr 96.3 0.0033 7.1E-08 66.4 3.9 29 383-411 2-30 (180)
489 TIGR03265 PhnT2 putative 2-ami 96.3 0.0063 1.4E-07 72.0 6.6 28 379-406 28-55 (353)
490 cd03243 ABC_MutS_homologs The 96.3 0.0057 1.2E-07 66.5 5.8 24 380-403 28-51 (202)
491 PRK02496 adk adenylate kinase; 96.3 0.0033 7.2E-08 67.1 3.9 29 383-411 3-31 (184)
492 PRK09536 btuD corrinoid ABC tr 96.3 0.005 1.1E-07 73.9 5.7 28 378-405 26-53 (402)
493 PRK11000 maltose/maltodextrin 96.3 0.0068 1.5E-07 72.2 6.7 27 379-405 27-53 (369)
494 cd03232 ABC_PDR_domain2 The pl 96.3 0.012 2.5E-07 63.5 8.0 26 379-404 31-56 (192)
495 KOG2228|consensus 96.3 0.02 4.4E-07 65.2 10.0 167 356-539 26-219 (408)
496 COG3839 MalK ABC-type sugar tr 96.3 0.0066 1.4E-07 70.5 6.4 29 378-406 26-54 (338)
497 PF00437 T2SE: Type II/IV secr 96.3 0.0075 1.6E-07 68.5 6.7 93 361-458 111-207 (270)
498 cd03259 ABC_Carb_Solutes_like 96.2 0.0085 1.8E-07 65.5 6.8 28 378-405 23-50 (213)
499 cd02019 NK Nucleoside/nucleoti 96.2 0.0057 1.2E-07 54.6 4.4 23 383-405 1-23 (69)
500 PLN02674 adenylate kinase 96.2 0.0064 1.4E-07 67.9 5.8 36 381-418 31-66 (244)
No 1
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-176 Score=1536.59 Aligned_cols=633 Identities=47% Similarity=0.775 Sum_probs=606.1
Q ss_pred CcccceeeeccCC----cHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHhccCCCCCCChhHHHHHHHhcCCCChHHHH
Q psy8969 137 NFNDHKVSLVKDL----SEVYSALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQ 212 (1230)
Q Consensus 137 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 212 (1230)
.|+.+.++.+++. +.+++|+++.+.+.|++|+++++.++.+....+.. +++|++|||++|+++.++.+++|
T Consensus 108 ~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~-----i~~~~klad~iaa~l~~~~~~kQ 182 (782)
T COG0466 108 EFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPPEELQSLNS-----IDDPGKLADTIAAHLPLKLEEKQ 182 (782)
T ss_pred CceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhc-----ccchHHHHHHHHHhCCCCHHHHH
Confidence 4777888777642 46789999999999999999999777655555544 99999999999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q psy8969 213 AILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKD 292 (1230)
Q Consensus 213 ~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~l~eq~~~i~~elg~~~~~~~~~~~~~~~~~~~ 292 (1230)
+|||+.|+.+||++++.+|.+|++.+++|++|+++|+++|+|+|||||||||||+||+|||+++|+. +++++|++||++
T Consensus 183 ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~ 261 (782)
T COG0466 183 EILETLDVKERLEKLLDLLEKEIDLLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEK 261 (782)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999665444 788999999999
Q ss_pred CCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHH
Q psy8969 293 KKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAV 372 (1230)
Q Consensus 293 ~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~ 372 (1230)
+.||++|++++++||+||++|+|+||||+|+|||||||++|||++.+.+++||.+|+++||+|||||++||+||+|||||
T Consensus 262 ~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV 341 (782)
T COG0466 262 LKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAV 341 (782)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEE
Q psy8969 373 SQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLV 452 (1230)
Q Consensus 373 ~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvi 452 (1230)
.++.+..+|+||||+|||||||||||++||+++||+|+||++||++|++||+||||||+|+|||+|+|.|+++++.||||
T Consensus 342 ~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~ 421 (782)
T COG0466 342 QKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVF 421 (782)
T ss_pred HHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHH
Q psy8969 453 LIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKV 532 (1230)
Q Consensus 453 llDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~ 532 (1230)
+||||||++++++|||++||||||||+||..|.|||+++++|||+|+||||||++++||.||+|||++|+++|||.+||+
T Consensus 422 LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl 501 (782)
T COG0466 422 LLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKL 501 (782)
T ss_pred EeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCc-eEechhhhhhhc
Q psy8969 533 AIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDK-VTVTNDNLSDFV 611 (1230)
Q Consensus 533 ~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~-~~i~~~~~~~~~ 611 (1230)
+||++||+|++++++||++.++.++|++|..||++||||||||+|+|.|.+||||++.+++.+.... +.|+.++|.+||
T Consensus 502 ~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yL 581 (782)
T COG0466 502 EIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYL 581 (782)
T ss_pred HHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999877666 589999999999
Q ss_pred CCCcccccccccCCCCceEEeeeeeeeccCC-----------cceEEEec------------------cccccccCCCC-
Q psy8969 612 GKPIFSHDRLFEITPPGVVTRKVALTIVKKE-----------SDKVTVTN------------------DNLSDFVGKPI- 661 (1230)
Q Consensus 612 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~------------------~~~~~~~~~~~- 661 (1230)
|.++|++++..+.+++|+||| +|||.+||+ +|.+++|| +++.+|..++.
T Consensus 582 G~~~f~~~~~~~~~~vGvVtG-LAWT~vGGd~L~IE~~~~~Gkg~l~lTG~LGdVMKESa~~A~s~vrs~a~~~~i~~~~ 660 (782)
T COG0466 582 GVPVFRYGKAEEEDQVGVVTG-LAWTEVGGDLLTIEAVKMPGKGKLTLTGSLGDVMKESAQAALSYVRSRAEKLGIDPDF 660 (782)
T ss_pred CCcccCccccccCCCCeeEee-eeeecCCceEEEEEEEEecCCccEEEeccHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999999999 599999985 37888987 56777877775
Q ss_pred cccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHH
Q psy8969 662 FSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKR 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r 741 (1230)
|...++|+|+|+|| +|||||||||||+|||+|+|||+||+++|||||||||||+||||||||||+|||+|
T Consensus 661 fek~dIHiHVPeGA----------tPKDGPSAGitm~TAlvS~lt~~~V~~~vAMTGEITLrG~VLpIGGLKEKllAA~R 730 (782)
T COG0466 661 FEKRDIHIHVPEGA----------TPKDGPSAGITMATALVSLLTGKPVRADVAMTGEITLRGRVLPIGGLKEKLLAAHR 730 (782)
T ss_pred ccccceEEECCCCC----------CCCCCcchHHHHHHHHHHHHhCCCCCCCccceeeEEeeeceeecccHHHHHHHHHh
Confidence 55568999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeecCccccccccCchhhHhhccceecccchhhhhhccccc
Q psy8969 742 VGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEH 786 (1230)
Q Consensus 742 ~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ia~~h 786 (1230)
+||++||+|++|++|++++|+++++++++|+|+++++|+.++|..
T Consensus 731 ~GIk~viiP~~N~~DleeiP~~vk~~l~i~~V~~~~eVl~~al~~ 775 (782)
T COG0466 731 GGIKTVIIPKDNERDLEEIPDNVKEGLEIHPVKTIDEVLKLALVG 775 (782)
T ss_pred cCCcEEeccccccccHHhCCHHHHcCCeEEEeccHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999865
No 2
>KOG2004|consensus
Probab=100.00 E-value=2.8e-166 Score=1440.60 Aligned_cols=641 Identities=64% Similarity=1.023 Sum_probs=612.6
Q ss_pred ccceeeccCCcccceeeeccCCcHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHhccCCCCCCChhHHHHHHHhcCCCC
Q psy8969 128 MQMAAENDDNFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAE 207 (1230)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (1230)
++|..|+|.|....++ +.+++ ++|++.+++..+.+++++|+.+.+.+..+... ...++|.+||||.|+....+
T Consensus 192 ~~vl~v~v~~v~~e~~---~~~~~-~ka~~~ei~~t~rdii~~n~l~r~~v~~~~~~---~~~~~~~~LaD~~aai~~~~ 264 (906)
T KOG2004|consen 192 AEVLSVEVENVKDEPF---KKDEE-IKALTSEILKTLRDIIAVNSLFREQVATLSQL---IVEDNPIKLADFGAAISGAE 264 (906)
T ss_pred CCceeeeeecccCCcc---CcchH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hcccChhHHHHHHHHHhccC
Confidence 8999999999999888 55555 99999999999999999999999988877643 46889999999999999999
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q psy8969 208 GTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFR 287 (1230)
Q Consensus 208 ~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~l~eq~~~i~~elg~~~~~~~~~~~~~~ 287 (1230)
..+.|++|+++|+.+||++.+.+|++|++..+|+++|.+.|++++.+.||+|+|+||||+|++|||.|+|+++...++|+
T Consensus 265 ~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~ 344 (906)
T KOG2004|consen 265 FHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFR 344 (906)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888898999999
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHH
Q psy8969 288 ERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRIL 367 (1230)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~ 367 (1230)
+|++.+.||++|.+++.+||.||+.|++++|||+|+|||||||++||||++|.+++||.+|+++||+|||||++||+||+
T Consensus 345 er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRIL 424 (906)
T KOG2004|consen 345 ERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERIL 424 (906)
T ss_pred HHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcC
Q psy8969 368 EFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT 447 (1230)
Q Consensus 368 e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~ 447 (1230)
|||||.+++|..+|+||||+|||||||||+||+||++|||+|||+|+||++|+++|+||||||||+|||+|+|+++..++
T Consensus 425 EfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t 504 (906)
T KOG2004|consen 425 EFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT 504 (906)
T ss_pred HHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCC
Q psy8969 448 ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYV 527 (1230)
Q Consensus 448 ~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~ 527 (1230)
+|||||||||||+|++.+|||++||||+|||+||.+|+|||+++|+|+|+|+||||||..++||+||||||++|+++||+
T Consensus 505 ~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv 584 (906)
T KOG2004|consen 505 ENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYV 584 (906)
T ss_pred CCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcC-----------
Q psy8969 528 AEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKE----------- 596 (1230)
Q Consensus 528 ~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~----------- 596 (1230)
.+||+.||.+||+|++++.+||+++++.++++++..||++||||+|||+|++.|++|||++|++++++.
T Consensus 585 ~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~Rk~Al~vv~~~~~~~~~~~~~~ 664 (906)
T KOG2004|consen 585 AEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKICRKVALKVVEGENSKEESAEKNG 664 (906)
T ss_pred HHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred ------------------------CCceEechhhhhhhcCCCcccccccccCCCCceEEeeeeeeeccCCc---------
Q psy8969 597 ------------------------SDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVKKES--------- 643 (1230)
Q Consensus 597 ------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------- 643 (1230)
...+.|+.++|.+|+|+|.|..++.++..++||+.| ++||.+||.+
T Consensus 665 ~~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~e~~y~~tp~GVvmG-LaWT~mGG~~lyvEts~~~ 743 (906)
T KOG2004|consen 665 RESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTSERMYEVTPPGVVMG-LAWTAMGGSTLYVETSLMR 743 (906)
T ss_pred ccccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccHHHHhccCCCeeEEE-EEEecCCCeEEEEEEEEec
Confidence 134789999999999999999999999999999999 5999988742
Q ss_pred ----ceEEEecc--------------c----cccc-cCCCCcccccccccCCCcceeeeeccccCcCCCCCchhHHHHHH
Q psy8969 644 ----DKVTVTND--------------N----LSDF-VGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTA 700 (1230)
Q Consensus 644 ----~~~~~~~~--------------~----~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a 700 (1230)
|.|.+||. . +.++ .....|...++|.|+|+|| +||||||||+||+||
T Consensus 744 ~~~~g~l~~TGqLGDVMKESa~iA~t~ar~~~~~~~p~n~~l~~~~IHlH~PeGA----------tpKDGPSAGvTmvTs 813 (906)
T KOG2004|consen 744 GLGDGSLEITGQLGDVMKESAQIAYTWARAFLSKKEPENKFLENSDIHLHVPEGA----------TPKDGPSAGVTMVTA 813 (906)
T ss_pred cCCCCceEEecchHHHHHHHHHHHHHHHHHHHHhhCcccchhcccceeeeccCCC----------CCCcCCcccchhHHH
Confidence 66888871 1 2222 2233556678999999999 999999999999999
Q ss_pred HHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccccccccCchhhHhhccceecccchhhhh
Q psy8969 701 LVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVY 780 (1230)
Q Consensus 701 ~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl 780 (1230)
|+|+++|+|||+|+||||||||+|+||||||||||++||+|+|+|+||+|++|++||.++|+++++++++||++++++|+
T Consensus 814 LlSLa~~kpVr~d~AMTGEvtLtGkVLpiGGiKEK~iAA~Rsg~k~ii~P~~N~~D~~elp~~vkegLev~~a~~yedv~ 893 (906)
T KOG2004|consen 814 LLSLALGKPVRQDLAMTGEVTLTGKVLPVGGIKEKTIAARRSGVKTIIFPEANRRDFEELPENVKEGLEVHFAETYEDVF 893 (906)
T ss_pred HHHHhhCCcchhhhHhhcccccccceeccCchHHHHHHHHhcCCeEEEccccchhhHHhhhhhhhccceEEeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc
Q psy8969 781 DLVFEH 786 (1230)
Q Consensus 781 ~ia~~h 786 (1230)
+.+|..
T Consensus 894 ~~aF~~ 899 (906)
T KOG2004|consen 894 EAAFDD 899 (906)
T ss_pred HHHhCC
Confidence 999853
No 3
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=4.5e-124 Score=1173.36 Aligned_cols=645 Identities=40% Similarity=0.670 Sum_probs=602.5
Q ss_pred ccchhccc-eeeccCCcccceeeeccC---CcHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHhccCCCCCCChhHHHH
Q psy8969 123 TFYHVMQM-AAENDDNFNDHKVSLVKD---LSEVYSALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLAD 198 (1230)
Q Consensus 123 ~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (1230)
.-++++.| +++.-+.|+.+.|+++++ ...+.+|+.+.+++.|++|+++++.++.++...+. .++||++|+|
T Consensus 93 ~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~~~~e~~al~~~ll~~~~~~~~l~~~~~~e~~~~~~-----~~ddp~~Lad 167 (784)
T PRK10787 93 EGLQRARISALSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLN-----SIDDPARLAD 167 (784)
T ss_pred EEEEEEEEEEEEcCCCCEEEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhcccCCHHHHhhhh-----ccccHHHHHH
Confidence 44555554 345567788999988875 33567899999999999999999998877766554 4899999999
Q ss_pred HHHhcCCCChHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy8969 199 LGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDD 278 (1230)
Q Consensus 199 ~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~l~eq~~~i~~elg~~~~~ 278 (1230)
++|++++++.++||+|||+.|+.+||++++.+|.+|+++++++++|+++|+++|+++|||||||||||+||+|||++ ++
T Consensus 168 ~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~v~~~~~k~q~e~~lreq~~~i~~elg~~-~~ 246 (784)
T PRK10787 168 TIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELGEM-DD 246 (784)
T ss_pred HHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhhhhhcccccCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999954 44
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccC
Q psy8969 279 KDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYG 358 (1230)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G 358 (1230)
.++++++|++||++++||++|++++++||+||++|+++||||+|+|||||||++|||+++|++++||.+|+++||+||||
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g 326 (784)
T PRK10787 247 APDENEALKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYG 326 (784)
T ss_pred chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhH
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKV 438 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i 438 (1230)
+++||++|++|+++....+..+|+++||+||||+|||++|++||+.++++|++++++|+.|.++++||+++|+|++||.+
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~ 406 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKL 406 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHH
Confidence 99999999999999888877889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhccc
Q psy8969 439 IQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRM 518 (1230)
Q Consensus 439 ~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~ 518 (1230)
++++..++..+|||||||||+++++.+|||.++||++|||+||..|.|+|+++++|+|+|+||+|||.. .||+||+|||
T Consensus 407 ~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~ 485 (784)
T PRK10787 407 IQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRM 485 (784)
T ss_pred HHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcce
Confidence 999999999999999999999999889999999999999999999999999999999999999999998 5999999999
Q ss_pred ceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcC-C
Q psy8969 519 EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKE-S 597 (1230)
Q Consensus 519 ~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~-~ 597 (1230)
++|.+.+|+.+|+.+|+++||+|++++++|+....+.++++++.+|++.|++|+|||+|+|.|++++|+.+.+++.+. .
T Consensus 486 ~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~ 565 (784)
T PRK10787 486 EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSL 565 (784)
T ss_pred eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988876543 4
Q ss_pred CceEechhhhhhhcCCCcccccccccCCCCceEEeeeeeeeccCC-----------cceEEEec----------------
Q psy8969 598 DKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVKKE-----------SDKVTVTN---------------- 650 (1230)
Q Consensus 598 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~---------------- 650 (1230)
..+.|+.+++.+|||+++|..++......+|+|+| ++||.+||+ +|++.+||
T Consensus 566 ~~v~v~~~~~~~~lg~~~~~~~~~~~~~~~G~~~g-la~t~~gg~~l~iE~~~~~g~g~~~~tG~lg~vmkes~~~A~~~ 644 (784)
T PRK10787 566 KHIEINGDNLHDYLGVQRFDYGRADNENRVGQVTG-LAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVMQESIQAALTV 644 (784)
T ss_pred ceeeecHHHHHHHhCCCccccchhhcCCCceEEEE-eEEeCCCeEEEEEEEEEecCCceEEEecCcHHHHHHHHHHHHHH
Confidence 56899999999999999999999888999999999 599998863 47888887
Q ss_pred --cccccccCCCCc-ccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEe
Q psy8969 651 --DNLSDFVGKPIF-SHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVL 727 (1230)
Q Consensus 651 --~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~ 727 (1230)
+++..+...+.| ...++|+|+|.|+ +||||||||+||++||+|+++|+||++++||||||||+|+|+
T Consensus 645 ~~~~~~~~~~~~~~~~~~Di~i~v~~g~----------~~~dgpsagla~~~Al~S~~~~~pv~~~~a~tGEi~L~G~V~ 714 (784)
T PRK10787 645 VRARAEKLGINPDFYEKRDIHVHVPEGA----------TPKDGPSAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVL 714 (784)
T ss_pred HHHHHHHcCCCcccccCceEEEEecCCC----------CCCCCCchHHHHHHHHHHHhhCCCCCCCeEEEEEecCCeeEE
Confidence 334455555554 4678999999998 999999999999999999999999999999999999999999
Q ss_pred ecCCchHHHHHHHHcCcceeecCccccccccCchhhHhhccceecccchhhhhhcccc
Q psy8969 728 PVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFE 785 (1230)
Q Consensus 728 ~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ia~~ 785 (1230)
||||++||+++|+|+|+++||+|..|.+|+.++|+.++.++++++++++.+++..++.
T Consensus 715 pVggl~eki~~A~r~G~k~viiP~~n~~~~~~~~~~~~~~i~i~~v~~~~ea~~~~~~ 772 (784)
T PRK10787 715 PIGGLKEKLLAAHRGGIKTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQ 772 (784)
T ss_pred eeCCHHHHHHHHHHCCCCEEEEChhhhhhhhhccHHhcCCcEEEEeCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999874
No 4
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=100.00 E-value=1.3e-114 Score=1100.14 Aligned_cols=643 Identities=53% Similarity=0.876 Sum_probs=595.1
Q ss_pred chhccc-eeeccCCcccceeeeccC-----CcHHHHHHHHHHHHHHHHHHHhCc--CCHHHHHHHHhccCCCCCCChhHH
Q psy8969 125 YHVMQM-AAENDDNFNDHKVSLVKD-----LSEVYSALMQEVIKTVRDIISMNP--LYKEQLMILLQQENSPVVDNPIYL 196 (1230)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 196 (1230)
++++.| +++.-..|+.+.|+.+++ ++.+++|+.+.+.+.|++|+++++ ..+.+....+. .++||++|
T Consensus 88 ~~R~rI~~~~~~~p~~~A~V~~l~~~~~~~~~~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~-----~~~dp~~L 162 (775)
T TIGR00763 88 LRRIRIKELSDKGGYLVVRVDNLKEEPFDKDDEEIKALTREIKETFRELISLSKLFREQPALLSALE-----DIDEPGRL 162 (775)
T ss_pred EEEEEEEEEecCCCcEEEEEEEecCcCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHh-----ccCCHHHH
Confidence 344443 445567888999988863 456789999999999999999999 66666555453 38999999
Q ss_pred HHHHHhcCCCC-hHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q psy8969 197 ADLGAALTGAE-GTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLE 275 (1230)
Q Consensus 197 ~~~~~~~~~~~-~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~l~eq~~~i~~elg~~ 275 (1230)
+|++|++++++ .++||+|||+.|+.+||++++.+|.+|+++++++++|+++|+++|+++|||||||||||+||+|||++
T Consensus 163 ad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~~~I~~~v~~~~~~~qr~~~Lreqlk~i~~eLg~~ 242 (775)
T TIGR00763 163 ADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLKKELELLKLQNKITKKVEEKMEKTQREYYLREQLKAIKKELGIE 242 (775)
T ss_pred HHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred CCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhccc
Q psy8969 276 KDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDD 355 (1230)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d 355 (1230)
++.++++++|++||++++||+++++++.+||+||++|+++|+||+|+|+||||+++|||++.+.+++|+..++++||++
T Consensus 243 -~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~ 321 (775)
T TIGR00763 243 -KDDKDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDED 321 (775)
T ss_pred -CCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhh
Confidence 4445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCc
Q psy8969 356 HYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMP 435 (1230)
Q Consensus 356 ~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~ 435 (1230)
|||++++|++|.+|+++..+.+..+++++||+||||||||++|++||+.++++|++++++|+.|.+++.||+++|+|+++
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~ 401 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMP 401 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCC
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhh
Q psy8969 436 GKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLR 515 (1230)
Q Consensus 436 g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~ 515 (1230)
|.++++|..+...+|||||||||+++++.+||+.++||++||++|+..|+|+|++.++|+++++||+|||.++.||+||+
T Consensus 402 g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~ 481 (775)
T TIGR00763 402 GRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLL 481 (775)
T ss_pred chHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHh
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred cccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q psy8969 516 DRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKK 595 (1230)
Q Consensus 516 ~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~ 595 (1230)
|||++|.+++|+.+|+..|++++++|++++++|+..+++.++++++.+|++.||+|+|||+|+|.|+++||++|.+++..
T Consensus 482 ~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~ 561 (775)
T TIGR00763 482 DRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQ 561 (775)
T ss_pred CCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred -CCC-----ceEechhhhhhhcCCCcccccccccCCCCceEEeeeeeeeccC-----------CcceEEEec--------
Q psy8969 596 -ESD-----KVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVKK-----------ESDKVTVTN-------- 650 (1230)
Q Consensus 596 -~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~-------- 650 (1230)
... .+.|+.+++++|+|.|.|..+.......||+|+| ++|+.++| +.|++.+||
T Consensus 562 ~~~~~~~~~~v~i~~~~~~~~lg~~~~~~~~~~~~~~~G~v~g-la~~~~~g~~~~iE~~~~~G~~~~~~tG~~~~~~kE 640 (775)
T TIGR00763 562 GEKKKSEAESVVITPDNLKKYLGKPVFTYERAYEVTPPGVVMG-LAWTPMGGDTLFIETTKVAGKGSLELTGQLGDVMKE 640 (775)
T ss_pred cCcccCCcccccCCHHHHHHhcCccccccchhccCCCCeEEEE-EEEeCCCcEEEEEEEEEeCCCceEEEeCCchHHHHH
Confidence 222 3789999999999999999999988999999999 59987654 236788886
Q ss_pred ----------cccccccCCC-CcccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeee
Q psy8969 651 ----------DNLSDFVGKP-IFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGE 719 (1230)
Q Consensus 651 ----------~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtge 719 (1230)
+++..++... .|...++|+|+|+|+ +||||||||+|||+||+|+++++||++++|||||
T Consensus 641 S~~~a~~~v~~~~~~~~~~~~~~~~~di~v~~~~g~----------~~k~Gpsa~laia~al~sa~~~~~v~~~~~~~GE 710 (775)
T TIGR00763 641 SAQIALTYVRSIAADLGISPNFFEKADIHLHVPEGA----------TPKDGPSAGITMATALLSLATGKPVRPDVAMTGE 710 (775)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCeEEEEEcCCcc----------cCCCCCcchHHHHHHHHHHccCCCCCCCEEEEEE
Confidence 1222333333 346678999999998 9999999999999999999999999999999999
Q ss_pred EEEeeeEeecCCchHHHHHHHHcCcceeecCccccccccCchhhHhhccceecccchhhhhhccc
Q psy8969 720 ISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVF 784 (1230)
Q Consensus 720 itl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ia~ 784 (1230)
|||+|+|+||||+++|+++|+|+|+++||+|.+|.+|+.++|+.+..++++++++++.+++..+|
T Consensus 711 i~L~G~v~pv~g~~~k~~~A~~~G~~~viiP~~n~~~~~~~p~~~~~~~~i~~v~~l~e~~~~~~ 775 (775)
T TIGR00763 711 ITLRGKVLPIGGLKEKTIAAKRAGIKTIILPEKNRRDLEELPENVKEGLEIHFVKHYDEVLKKAF 775 (775)
T ss_pred ecCCceEEEeCCHHHHHHHHHHCCCCEEEECccchhhhhhchHhhcCCCEEEEeCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999988764
No 5
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=100.00 E-value=4.3e-43 Score=433.73 Aligned_cols=487 Identities=26% Similarity=0.405 Sum_probs=332.3
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q psy8969 208 GTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFR 287 (1230)
Q Consensus 208 ~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~l~eq~~~i~~elg~~~~~~~~~~~~~~ 287 (1230)
....+.+....++.+.|+.+.+.|...+....++.+|.++|.++|++.|.+|+-.-.+..|+++.|.|+...-+.++.+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 132 (615)
T TIGR02903 54 DPGLDTVPDPRELPEILEDTEDHIADILARRTVENRIERKVETRMQERQNKYLEEIRLQVLKEEKGPENSSTLKKLERL- 132 (615)
T ss_pred CCCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH-
Confidence 3344556666778888899999999999999999999999999999999999988888999988775542212222221
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHH
Q psy8969 288 ERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRIL 367 (1230)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~ 367 (1230)
+++++.. +.+.+.. .+- ...+ ++++|++.+.++++
T Consensus 133 ~~~~~~~--------~~~~~~~-------------------~~r-----------------p~~~-~~iiGqs~~~~~l~ 167 (615)
T TIGR02903 133 EKLEKKK--------LHKSAQS-------------------LLR-----------------PRAF-SEIVGQERAIKALL 167 (615)
T ss_pred HHHHHHH--------hhhHHhh-------------------hcC-----------------cCcH-HhceeCcHHHHHHH
Confidence 1111111 1111111 100 0011 35789999998887
Q ss_pred HHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh----------CCCeEEEecCCcc-hhHHHhhccccccccCch
Q psy8969 368 EFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL----------NREYFRFSVGGMS-DVAEIKGHRRTYVGAMPG 436 (1230)
Q Consensus 368 e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l----------~~~~~~~~~~~~~-d~~~i~g~~~~~~g~~~g 436 (1230)
..++. ..+..++|+|||||||||+|++|++.. +.+|+.++...+. +..++. ..++|....
T Consensus 168 ~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~---~~llg~~~~ 238 (615)
T TIGR02903 168 AKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVT---NPLLGSVHD 238 (615)
T ss_pred HHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHh---HHhcCCccH
Confidence 66531 335679999999999999999998766 4578888865442 111211 112332221
Q ss_pred hHH----HHHHhh-----------cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCc----------
Q psy8969 437 KVI----QCMKKT-----------KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDV---------- 491 (1230)
Q Consensus 437 ~i~----~~~~~~-----------~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~---------- 491 (1230)
.+. ..+... ...+.+||||||+.+.. +....|+.+|+..+ ..|.+.|+..
T Consensus 239 ~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~----~~Q~~Ll~~Le~~~-v~~~~~~~~~~~~~~~~~ik 313 (615)
T TIGR02903 239 PIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP----LLQNKLLKVLEDKR-VEFSSSYYDPDDPNVPKYIK 313 (615)
T ss_pred HHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH----HHHHHHHHHHhhCe-EEeecceeccCCcccchhhh
Confidence 111 111111 12356999999998743 34567788776432 1122222111
Q ss_pred -ccc---CCceEEE-EecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHH
Q psy8969 492 -PVD---LSRVLFI-CTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIK 566 (1230)
Q Consensus 492 -~~d---~s~v~~I-~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~ 566 (1230)
.++ ..++++| +|+|.++.++++|++||..+.+.+|+.+|...|+++.+ .+.+ +.++++++..| .
T Consensus 314 ~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a-----~~~~-----v~ls~eal~~L-~ 382 (615)
T TIGR02903 314 KLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAA-----EKIN-----VHLAAGVEELI-A 382 (615)
T ss_pred hhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHH-H
Confidence 011 1234444 67788889999999999999999999999999998854 2222 45777766555 5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHh--hcCCCceEechhhhhhhcCCCccc---ccccccCCCCceEEeeeeeeeccC
Q psy8969 567 NYCRESGVRNLQKHIEKVTRKVALTIV--KKESDKVTVTNDNLSDFVGKPIFS---HDRLFEITPPGVVTRKVALTIVKK 641 (1230)
Q Consensus 567 ~~~~e~gvR~l~~~i~~i~r~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~ 641 (1230)
.|+.+ | |.....|+.++..++.+.. .+....+.|+.++|+++++.+++. ..+......+|.+.|+ +|+.+.+
T Consensus 383 ~ys~~-g-Rraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r~~~~~~~~~~~~~~~g~v~~~-~~~g~~g 459 (615)
T TIGR02903 383 RYTIE-G-RKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISRLSPYEKRKASPTYEVGHVFGL-GVSGFVG 459 (615)
T ss_pred HCCCc-H-HHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCcCccchhhhccCCCCcEEEEEE-EEeCCCc
Confidence 67764 4 4444677777666544332 123345789999999999999876 3567777899999984 5653322
Q ss_pred ---------------CcceEEEecc--------------ccccccCCCCcccccccccCCCcceeeeeccccCcCCCCCc
Q psy8969 642 ---------------ESDKVTVTND--------------NLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPS 692 (1230)
Q Consensus 642 ---------------~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgps 692 (1230)
+.|.+.+++. .+....+. .|...++|+++++| .||||||
T Consensus 460 ~~v~vE~~~~~~g~pg~~~vgl~~~~~~e~kerv~~A~~~l~~~~g~-~~~~~di~vnl~~~-----------~~k~gps 527 (615)
T TIGR02903 460 SVLEIEAVAFEAKEPGKGTVRFNDTAGSMAKDSVFNAASVIRKITGK-DLSNYDIHVNVIGG-----------GRIDGPS 527 (615)
T ss_pred EEEEEEEEEecCCCCCCceEeeCCcchHHHHHHHHHHHHHHHHhCCC-CCCCeeEEEEcCCC-----------CCCCCch
Confidence 1233434321 11112221 34455677777655 5999999
Q ss_pred hhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccccccccCchhhHhhccceec
Q psy8969 693 AGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHF 772 (1230)
Q Consensus 693 ag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~f 772 (1230)
||+|||+||+|++.++|+++++||||||+|+|+|.||||+.+|+++|+++|+++||+|.+|.+++..+ + .++++++
T Consensus 528 adLaia~ailSa~~~~~~~~~~~~~GElsL~G~v~pV~Gi~~~i~~A~~~G~~~viiP~~n~~e~~~~---~-~~i~i~~ 603 (615)
T TIGR02903 528 AGAAITLCMISAILGKPIRQDVAITGEISLRGKIKPVGGIFEKIYGAKQAGIKTVVIPEENLKDVPQG---L-PGIEVKF 603 (615)
T ss_pred HHHHHHHHHHHhccCCCCCCCEEEEEEecCCceEEeeCCHHHHHHHHHHCCCCEEEECHHHHHHHhhc---c-CCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998875222 2 4899999
Q ss_pred ccchhhhhhccc
Q psy8969 773 VSEWRQVYDLVF 784 (1230)
Q Consensus 773 vs~~~eVl~ia~ 784 (1230)
+++..++++++|
T Consensus 604 v~~l~e~~~~~~ 615 (615)
T TIGR02903 604 VSTIEELMRIVF 615 (615)
T ss_pred eCCHHHHHHHhC
Confidence 999999988764
No 6
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=100.00 E-value=1.2e-40 Score=406.43 Aligned_cols=379 Identities=25% Similarity=0.341 Sum_probs=269.3
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh----------CCCeEEEecCCc-chhH-
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL----------NREYFRFSVGGM-SDVA- 421 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l----------~~~~~~~~~~~~-~d~~- 421 (1230)
++++|++.+.+.+...++ ...+..++|+||||||||++|++|.+.. +.+|+.+++... .+..
T Consensus 65 ~~iiGqs~~i~~l~~al~------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALC------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHHh------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 368999999988876542 1245678999999999999999998753 368999987532 1111
Q ss_pred ---HHhh--cccccccc-----------CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhh---
Q psy8969 422 ---EIKG--HRRTYVGA-----------MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNA--- 482 (1230)
Q Consensus 422 ---~i~g--~~~~~~g~-----------~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~--- 482 (1230)
.+.| +...|.|+ .+|.+ ....+.+|||||||.+.. +..+.||.+|+.....
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l------~~a~gG~L~IdEI~~L~~----~~q~~LL~~Le~~~~~~~~ 208 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAV------TRAHGGVLFIDEIGELHP----VQMNKLLKVLEDRKVFLDS 208 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchh------hccCCcEEEEechhhCCH----HHHHHHHHHHHhCeeeecc
Confidence 1111 22223322 12322 233567999999999854 4577888888642210
Q ss_pred -----------hhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCC
Q psy8969 483 -----------NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSP 551 (1230)
Q Consensus 483 -----------~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~ 551 (1230)
.++...++..+..+-.++++|+|.++.|+++|++||..|.+.+|+.+|...|+++.+ ++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a-----~k~---- 279 (531)
T TIGR02902 209 AYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA-----EKI---- 279 (531)
T ss_pred ccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHH-----HHc----
Confidence 011111112233334566688999999999999999999999999999999988754 222
Q ss_pred CCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCCcccc---cccccCCCCc
Q psy8969 552 EQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSH---DRLFEITPPG 628 (1230)
Q Consensus 552 ~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~g 628 (1230)
.+.++++++..| ..|++ .+|.|...+..++. ++..+ ....|+.++++.+++...+.+ .+....+++|
T Consensus 280 -~i~is~~al~~I-~~y~~--n~Rel~nll~~Aa~-----~A~~~-~~~~It~~dI~~vl~~~~~~~~~~~~~~~~~~vg 349 (531)
T TIGR02902 280 -GINLEKHALELI-VKYAS--NGREAVNIVQLAAG-----IALGE-GRKRILAEDIEWVAENGNYHPKPEIKLSSEPQIG 349 (531)
T ss_pred -CCCcCHHHHHHH-HHhhh--hHHHHHHHHHHHHH-----HHhhC-CCcEEcHHHHHHHhCCcccccchhhhcccCCceE
Confidence 367899998854 56876 34666555544332 12111 345799999999999988886 4566778999
Q ss_pred eEEeeeeeee-c------------c--CCcceEEEecccc----------------------------ccccCCCCcccc
Q psy8969 629 VVTRKVALTI-V------------K--KESDKVTVTNDNL----------------------------SDFVGKPIFSHD 665 (1230)
Q Consensus 629 ~~~~~~~~~~-~------------~--~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 665 (1230)
+++|+ +|+. . . +..|.+.+||-.- ....+. .+...
T Consensus 350 ~v~gl-av~g~~~g~~v~vE~~~~~~~~~~g~~~i~G~~~~~~~~~~~~~~~~k~~~~es~~~v~~~l~~~~g~-~~~~~ 427 (531)
T TIGR02902 350 RVNGL-AVYGPNSGAVLEVEATAERAENLPGSINVTGIIEEEEIGGSGKSVRRKSSARGSVENVLAVLRSVFGI-NPQNY 427 (531)
T ss_pred EEEEE-EEEcCCceEEEEEEEEEecCCCCCCeEEEEeccCccccccchhhhhHHHHHHHHHHHHHHHHHHhcCC-CCCCe
Confidence 99995 5542 1 1 2235778776211 011111 23345
Q ss_pred cccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHHcCcc
Q psy8969 666 RLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVH 745 (1230)
Q Consensus 666 ~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~ 745 (1230)
++|+++|.| +||||||||++||+||+|+++++|+++++||||||+|+|+|.||||+.+|+++|+|+|++
T Consensus 428 di~vn~p~~-----------~~k~Gpsadlaia~ailsa~~~~~~~~~~a~~GElsL~G~v~pV~Gv~~ki~~A~~~G~~ 496 (531)
T TIGR02902 428 DIHINFPGG-----------IPVDGPSAGVAIAVAIYSAIFKCPIDNKVAMTGEISLNGLVKPVGGVPSKIEAAKKAGAK 496 (531)
T ss_pred eEEEEcCCC-----------CCCCCccHHHHHHHHHHHHccCCCCCCCEEEEEEecCCceEeccCCHHHHHHHHHHcCCC
Confidence 677777755 799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCccccccccCchhhHhhccceecccchhhhhhccc
Q psy8969 746 TILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVF 784 (1230)
Q Consensus 746 ~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ia~ 784 (1230)
+||+|.+|.+++..+ ..+++++++++..+++.++|
T Consensus 497 ~viiP~~n~~e~~~~----~~~i~v~~v~~l~e~~~~~~ 531 (531)
T TIGR02902 497 KVIIPYENWQESFGS----ISGINVIPVKNIDEALNYAL 531 (531)
T ss_pred EEEECHHHHHHHhhc----cCCcEEEEeCCHHHHHHHhC
Confidence 999999998876332 25899999999999987654
No 7
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=100.00 E-value=8.3e-38 Score=383.21 Aligned_cols=312 Identities=21% Similarity=0.329 Sum_probs=227.6
Q ss_pred CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhc---c------CccccCCceEEEEecCCC--CCCCHhhhc
Q psy8969 448 ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHY---L------DVPVDLSRVLFICTANVI--DTIPEPLRD 516 (1230)
Q Consensus 448 ~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~---~------~~~~d~s~v~~I~TaN~~--~~I~~~L~~ 516 (1230)
++.++|||||+.+. .+....|+++|...+-. +... . ..++++ ++.+|+++|+. ..++++|++
T Consensus 226 nGGtL~LDei~~L~----~~~q~~Llr~L~~~~i~--i~g~~e~~~~~~~~~~~ip~-dvrvI~a~~~~ll~~~dpdL~~ 298 (637)
T PRK13765 226 HKGVLFIDEINTLD----LESQQSLLTAMQEKKFP--ITGQSERSSGAMVRTEPVPC-DFIMVAAGNLDALENMHPALRS 298 (637)
T ss_pred CCcEEEEeChHhCC----HHHHHHHHHHHHhCCEE--ecccccccccccCCCcceee-eeEEEEecCcCHHHhhhHHHHH
Confidence 45799999999883 23567788877532210 0000 0 111222 56788888874 678999999
Q ss_pred ccce----eecCC---CCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH---H-HHHHHHHH
Q psy8969 517 RMEM----IDVSG---YVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN---L-QKHIEKVT 585 (1230)
Q Consensus 517 R~~~----i~~~~---~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~---l-~~~i~~i~ 585 (1230)
||.. +.+.. -+.+.....+ + .+++...++|. -..++++++..||+.|+|++|+|+ | .+.|..++
T Consensus 299 rfk~~~v~v~f~~~~~d~~e~~~~~~-~-~iaqe~~~~G~---l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~ 373 (637)
T PRK13765 299 RIKGYGYEVYMRDTMEDTPENRRKLV-R-FVAQEVKRDGK---IPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLV 373 (637)
T ss_pred HhccCeEEEEcccccCCCHHHHHHHH-H-HHHHHhhhccC---CCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHH
Confidence 9973 33332 2334444444 2 23444444432 237999999999999999999998 5 67778888
Q ss_pred HHHHHHHhhcCCCc--------------eEechhhhhhhcCCCcccccccccCCCCceEEeeeeeeecc-C---------
Q psy8969 586 RKVALTIVKKESDK--------------VTVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVK-K--------- 641 (1230)
Q Consensus 586 r~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~--------- 641 (1230)
|.+ ..++.....+ ..++.+.+++|++.+++......+...+|.++|+ +|+..+ |
T Consensus 374 r~a-~~~a~~~~~~~i~~~~v~~a~~~~~~i~~~~~~~~l~~~~~~~~~~~~g~~vG~v~gl-av~g~~~G~v~~Ievev 451 (637)
T PRK13765 374 RVA-GDIARSEGAELTTAEHVLEAKKIARSIEQQLADRYIERRKDYELFVTEGGEVGRVNGL-AVMGEDSGIVLPIMAEV 451 (637)
T ss_pred HHH-HHHHHhhccceecHHHHHHHHHhhhhhhHHHHHHHhCCccccchhhccccceeEEEEE-EEeccCceEEEEEEEEE
Confidence 773 3344332221 2366777889999988766666677899999994 665432 1
Q ss_pred ----Cc--ceEEEecc--------------ccccccCCCCcccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHH
Q psy8969 642 ----ES--DKVTVTND--------------NLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTAL 701 (1230)
Q Consensus 642 ----~~--~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~ 701 (1230)
+. |.+.++|- .+..+.+. .|...++|+++++|. +||||||||+||++||
T Consensus 452 ~~~~g~~~g~~~ltG~l~~~~kES~~~v~a~l~~~~g~-~~~~~~i~I~~~~~~----------~~kdG~SadLaia~Al 520 (637)
T PRK13765 452 TPAQSKEEGKVIATGKLKEIAKEAVQNVSAIIKKFTGK-DISNYDIHIQFVQTY----------EGVEGDSASISVATAV 520 (637)
T ss_pred EecCCCCCCeEEeCCCcHHHHHHHHHHHHHHHHhcccc-cCCCeEEEEEEcCcc----------cCCCCCcchHHHHHHH
Confidence 11 45666651 11122222 244557888888887 9999999999999999
Q ss_pred HHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccccccccCchhhHhhccceecccchhhhhh
Q psy8969 702 VSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYD 781 (1230)
Q Consensus 702 ~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ 781 (1230)
+|+++++||++++||||||+|+|.|+||||+.||+++|+++|++.||||.+|.+|+. +|+.+..+++++++++..+++.
T Consensus 521 lSal~~~pv~~~~a~tGELsL~G~V~pVgGv~eki~~A~~~G~k~ViIP~~N~~e~~-l~~~v~~~i~I~~V~~l~eal~ 599 (637)
T PRK13765 521 ISALENIPVDQSVAMTGSLSVRGDVLPVGGVTYKIEAAAEAGIKKVIIPKSNEQDVM-IEDEYEDKIEIIPVSTISEVLE 599 (637)
T ss_pred HHHccCCCCCCCEEEEEEECCCceEEecCCHHHHHHHHHHCCCCEEEECHHHHhhcc-chhhhcCCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred cccc
Q psy8969 782 LVFE 785 (1230)
Q Consensus 782 ia~~ 785 (1230)
+++.
T Consensus 600 ~al~ 603 (637)
T PRK13765 600 HALV 603 (637)
T ss_pred HHhh
Confidence 9874
No 8
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=100.00 E-value=1.8e-37 Score=382.42 Aligned_cols=311 Identities=22% Similarity=0.344 Sum_probs=234.4
Q ss_pred CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhcc---------CccccCCceEEEEecCCC--CCCCHhhhc
Q psy8969 448 ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYL---------DVPVDLSRVLFICTANVI--DTIPEPLRD 516 (1230)
Q Consensus 448 ~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~---------~~~~d~s~v~~I~TaN~~--~~I~~~L~~ 516 (1230)
++.++|||||+.+. .+....|+++|...+.. ..... ..++. -++.+|+++|+. ..++++|++
T Consensus 217 ngGtL~Ldei~~L~----~~~q~~Ll~~L~~~~i~--~~g~~e~~~~~~~~~~~ip-~dvrvIa~~~~~~l~~l~~~l~~ 289 (608)
T TIGR00764 217 HKGVLYIDEIKTMP----LEVQQYLLTALQDKKFP--ITGQSENSSGAMVRTEPVP-CDFILVASGNLDDLEGMHPALRS 289 (608)
T ss_pred CCCEEEEEChHhCC----HHHHHHHHHHHHhCcEE--ecCccccccccccCCCCCc-cceEEEEECCHHHHhhcCHHHHH
Confidence 45799999999885 23567888887543211 00000 01122 267889999974 689999999
Q ss_pred ccc---e-eecC---CCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHH----HHHHHHHH
Q psy8969 517 RME---M-IDVS---GYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNL----QKHIEKVT 585 (1230)
Q Consensus 517 R~~---~-i~~~---~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l----~~~i~~i~ 585 (1230)
||. + +.+. +.+.+....++ ++ +.++.+++|..+ .++++++..|++.|+|++|+|+. .|.|+.++
T Consensus 290 rf~~y~v~v~~~~~~~~~~e~~~~~~-~~-i~~~~~r~G~l~---~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~ll 364 (608)
T TIGR00764 290 RIRGYGYEVYMKDTMPDTPENRDKLV-QF-VAQEVKKDGRIP---HFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLV 364 (608)
T ss_pred HhcCCeEEEEeeccCCCCHHHHHHHH-HH-HHHHHHHhCCCC---cCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 999 4 2332 23455555543 33 345666776433 78999999999999999999998 89999999
Q ss_pred HHHHHHHhhcCCCceEechhhhhh---------------hcCCCcccccccccCCCCceEEeeeeeee-ccC--------
Q psy8969 586 RKVALTIVKKESDKVTVTNDNLSD---------------FVGKPIFSHDRLFEITPPGVVTRKVALTI-VKK-------- 641 (1230)
Q Consensus 586 r~~~~~~~~~~~~~~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~-------- 641 (1230)
|.+ ..++... ....|+.+++++ |+|.+........+...+|.++|+ +|+. .++
T Consensus 365 R~A-~~iA~~~-~~~~I~~ehV~~Ai~~~~~~~~~i~~~~l~~~~~~~~~~~~g~~~G~v~gl-av~g~~~g~~~~i~ve 441 (608)
T TIGR00764 365 RAA-GDIAKSS-GKVYVTAEHVLKAKKLAKTLEKQLADNYIERKKRYKVIVNEGGEVGRVNGL-AVIGEASGIVLPIKAI 441 (608)
T ss_pred HHH-HHHHHhc-CCceecHHHHHHHHHHHHHHHHHHHHHhccCcccCeeeeecCCccEEEEEE-EEeccCCceEEEEEEE
Confidence 996 4455443 345788888864 888776555555667789999994 6664 221
Q ss_pred -------CcceEEEec--------------cccccccCCCCcccccccccCCCcceeeeeccccCcCCCCCchhHHHHHH
Q psy8969 642 -------ESDKVTVTN--------------DNLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTA 700 (1230)
Q Consensus 642 -------~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a 700 (1230)
..|++.++| +.+..+.+ ..|...++|+++++|. +||||||||+||++|
T Consensus 442 ~~~~~g~~~g~~~~~Gl~g~~~kEs~~~~~a~l~~~~~-~~~~~~~i~I~l~~~~----------~~k~G~sadlaia~A 510 (608)
T TIGR00764 442 VAPAESKEEGRIIATGKLGEIAKEAVTNVSALIKKYTG-EDISNYDIHIQFLQTY----------EGVEGDSASISVATA 510 (608)
T ss_pred EEecccCCCceEEEecCcHHHHHHHHHHHHHHHHHhhC-CCCCCceEEEEeCCCC----------CCCCCCchHHHHHHH
Confidence 124566665 12222322 2455567888888887 999999999999999
Q ss_pred HHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccccccccCchhhHhhccceecccchhhhh
Q psy8969 701 LVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVY 780 (1230)
Q Consensus 701 ~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl 780 (1230)
|+|+++++||++++||||||+|+|+|+||||+.||+++|+|+|++.||+|.+|.+|+. +++.+..+++++++++.++++
T Consensus 511 ilSa~~~~pv~~~~a~tGElsL~G~V~pVgGv~~ki~~A~~~G~k~viIP~~N~~~~~-l~~~~~~~~~i~~v~~l~e~i 589 (608)
T TIGR00764 511 VISALEEIPVDQDVAMTGSLSVRGEVLPVGGVTEKIEAAIEAGIKKVIIPKSNMIDVI-LEKETEGKIEIIPVETLDEVL 589 (608)
T ss_pred HHHHccCCCCCCCEEEEEEECCCeEEEeeCCHHHHHHHHHHCCCCEEEECHHHHhhhc-cccccCCCEEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987 776666679999999999999
Q ss_pred hcccc
Q psy8969 781 DLVFE 785 (1230)
Q Consensus 781 ~ia~~ 785 (1230)
++++.
T Consensus 590 ~~l~~ 594 (608)
T TIGR00764 590 EHVLD 594 (608)
T ss_pred HHHHh
Confidence 98774
No 9
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=100.00 E-value=7.5e-36 Score=355.55 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=144.7
Q ss_pred hhhhcCCCcccccccc--cCCCCceEEeeeeeeeccCC------------cceEEEec-------------------ccc
Q psy8969 607 LSDFVGKPIFSHDRLF--EITPPGVVTRKVALTIVKKE------------SDKVTVTN-------------------DNL 653 (1230)
Q Consensus 607 ~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~------------~~~~~~~~-------------------~~~ 653 (1230)
.+.+.+.|--..+... ....||+|+| ++||..|+. +|++.+|| +++
T Consensus 473 ~e~~v~~pe~~~~~~i~~~p~~pGvv~G-LA~t~~Gg~~Ly~IE~~~~~G~Gkl~lTG~~lg~vmKESa~~A~sy~ks~a 551 (675)
T TIGR02653 473 EEFFVSVPEQGGSKLIPAGPPKPGVVYA-VTQNESGKVGLYRFEVQVSAGSGKHSVSGLGSNTTAKESIRVAFDYFKGNL 551 (675)
T ss_pred cEEEEecCccCCCCccCCCCCCCeEEEE-EEEcCCCCeEEEEEEEEEeCCCCceeeccCCchHHHHHHHHHHHHHHHHhH
Confidence 4455555544444433 3468999999 599876543 47888887 345
Q ss_pred ccccCCCCcccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCch
Q psy8969 654 SDFVGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIK 733 (1230)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~k 733 (1230)
.++.+...|...++|+|+|+|+ +|||||||||||+|||+|+++|+||++++||||||||+|+|+||||++
T Consensus 552 ~~l~~~~~~~~~DiHIHvpega----------~pkdGpSAGia~~~AL~Sal~~rpVr~~lAmTGEITL~G~VlpVGGlk 621 (675)
T TIGR02653 552 VRISASAKFSEHDYHLHVVDLH----------NTGPSTEASLAALIALCSALLKRPVQEQMVILGSMTIGGVINPVQDLA 621 (675)
T ss_pred HhcCCCcccCcceEEEECCCCC----------CCCCCchhHHHHHHHHHHHHhCCCCCCCeEEEEEEecceEEEecCCHH
Confidence 5566666777889999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcceeecCccccccccCchhhHhhccceecccchhhhhhccc
Q psy8969 734 EKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVF 784 (1230)
Q Consensus 734 ek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ia~ 784 (1230)
||++||+|+|+|+||||.+|++|+.++|++++.+++++|+++..+++..++
T Consensus 622 EKl~aA~raGaK~VLiP~~N~~Dl~~vP~ev~~kl~i~fy~d~~dal~kAL 672 (675)
T TIGR02653 622 GSLQLAMDSGAKRVLIPMSSARDIPTVPAELFSKFQISFYSDPVDAVYKAL 672 (675)
T ss_pred HHHHHHHHCCCCEEEccHHHhhhHHhCCHHHHhCCEEEEeCCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999988775
No 10
>PF05362 Lon_C: Lon protease (S16) C-terminal proteolytic domain; InterPro: IPR008269 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the C-terminal proteolytic domain of the archael, bacterial and eukaryotic Lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (Lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1Z0E_E 1Z0G_E 1Z0T_F 1Z0C_A 1Z0V_A 1Z0B_A 1Z0W_A 2KJP_A 2X36_F 3K1J_B ....
Probab=100.00 E-value=9.4e-34 Score=302.74 Aligned_cols=174 Identities=40% Similarity=0.687 Sum_probs=143.2
Q ss_pred EechhhhhhhcCCCcccccccccCCCCceEEeeeeeeeccC-----------CcceEEEec------------------c
Q psy8969 601 TVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVKK-----------ESDKVTVTN------------------D 651 (1230)
Q Consensus 601 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~------------------~ 651 (1230)
+|+.+++++|||.|+|..++......+|+++|+ +|+..|| ++|++.+|| +
T Consensus 1 ~i~~~~l~~~lg~~~~~~~~~~~~~~~G~v~GL-a~~~~GG~~l~IE~~~~~G~G~l~~tG~lg~v~kES~~~A~~~~k~ 79 (204)
T PF05362_consen 1 TITKEDLEEYLGPPRFDPEKISKEPKPGVVNGL-AVTSMGGAVLPIEAQVIPGKGKLIITGNLGDVMKESAKIAFSYLKA 79 (204)
T ss_dssp EE-TTTCHHHH-S-SS--SSSSSSEETTEEEEE-EEETTEEEEEEEEEEEEESSSEEEEESSBHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHcCCCccCccccccCCCCeEEEEE-EEecCCCeEEEEEEeeccCcceeEeecccchhHHHHHHHHHHHHHh
Confidence 488999999999999999999999999999995 8987664 347787776 2
Q ss_pred ccccccCCC-CcccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecC
Q psy8969 652 NLSDFVGKP-IFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVG 730 (1230)
Q Consensus 652 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iG 730 (1230)
++..+...+ .|...++|+|+|+|+ +||||||||+||++||+|+++|+||++++||||||+|+|.|+|||
T Consensus 80 ~~~~~~~~~~~~~~~dihi~~~~~~----------~~~dGpSAgla~~~al~S~~~~~~v~~~ia~TG~i~~~G~V~~Vg 149 (204)
T PF05362_consen 80 NLKRIGIDPSNFDNYDIHIHVPDGA----------IPKDGPSAGLAIALALYSALTGKPVRSDIAMTGEITLGGEVLPVG 149 (204)
T ss_dssp HHHCCSSTCCHHGCEEEEEEESSTT----------TTCCGGCCHHHHHHHHHHHHHT-EBETTEEE-BEE-TTSBEE--S
T ss_pred hhcccccccccccceeEEEeccccc----------ccCCCchhHHHHHHHHHHHHcCCCCCCCeeEEEEecCCCceeccc
Confidence 223333333 344568899999998 999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHcCcceeecCccccccccCchhhHhhccceecccchhhhhhcccc
Q psy8969 731 GIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFE 785 (1230)
Q Consensus 731 G~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ia~~ 785 (1230)
|++||+++|+|+|++.||+|.+|.+|+.++|+.++.+++++||++++++++.+|+
T Consensus 150 gl~eKl~~A~~~G~k~vliP~~n~~~l~~vp~~i~~~i~i~~v~~i~ea~~~al~ 204 (204)
T PF05362_consen 150 GLKEKLQAAKRAGAKRVLIPASNRKDLKEVPKEIKEKIEIIFVSTIDEALEIALE 204 (204)
T ss_dssp THHHHHHHHHHTT-SEEEEEGGGGGGCCTS-HHHHTSSEEEEESBHHHHHHHHBS
T ss_pred chhHHHHHHHHcCCeEEEEcHHHHHHHHHhHHHHhCCcEEEEECCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999998863
No 11
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=2.1e-30 Score=304.76 Aligned_cols=262 Identities=23% Similarity=0.326 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhc-------
Q psy8969 260 ILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTS------- 332 (1230)
Q Consensus 260 ~l~eq~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~------- 332 (1230)
.|++|+++|++|++. ...++++++++|++.+.|+.+...+.++++++..+.+.|+++.++++|++|+..
T Consensus 10 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 85 (364)
T TIGR01242 10 KLEDEKRSLEKEKIR----LERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGA 85 (364)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCCC
Confidence 578999999999972 456788999999999999999999999999999999999999999999999765
Q ss_pred --------------CCCCCcc-cccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCC
Q psy8969 333 --------------LPWGIQS-EENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPP 390 (1230)
Q Consensus 333 --------------lpw~~~~-~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPP 390 (1230)
|||++.. ...+++.....+..+|++|+++++++|.+++.....+ |...++++||+|||
T Consensus 86 ~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~Gpp 165 (364)
T TIGR01242 86 RVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPP 165 (364)
T ss_pred EEEEcCCcceEEeecccccccccccceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCC
Confidence 8998765 4577888889999999999999999999999764333 45678899999999
Q ss_pred CCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChh
Q psy8969 391 GVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPA 469 (1230)
Q Consensus 391 G~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~ 469 (1230)
|||||++|++||+.++.+|++++.+++. ..|+|+.+..+.+.|..+....| ||||||||.++..+.++..
T Consensus 166 GtGKT~lakaia~~l~~~~~~v~~~~l~---------~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~ 236 (364)
T TIGR01242 166 GTGKTLLAKAVAHETNATFIRVVGSELV---------RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT 236 (364)
T ss_pred CCCHHHHHHHHHHhCCCCEEecchHHHH---------HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCC
Confidence 9999999999999999999998753322 25888888889999998887776 8899999999755433222
Q ss_pred hHHHhhcChhhhhhhhhhcc--CccccCCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhh
Q psy8969 470 SALLEMLDPEQNANFLDHYL--DVPVDLSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 470 ~all~~ld~~q~~~f~d~~~--~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l 539 (1230)
+. |++++..+.+.+. +...+.+++.||+|||+++.||++|++ ||+ +|.++.|+.+++..|+..++
T Consensus 237 ~~-----~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 237 SG-----DREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred Cc-----cHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH
Confidence 11 2222222222211 111234689999999999999999996 886 68899999999999998765
No 12
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.7e-29 Score=273.99 Aligned_cols=224 Identities=24% Similarity=0.374 Sum_probs=179.2
Q ss_pred HHHHhhhhcccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc
Q psy8969 345 LTQAAKILDDDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM 417 (1230)
Q Consensus 345 ~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~ 417 (1230)
+.+...+-=+|++||++-++.|.|.+..+..+ |..+|+++|||||||||||.||||+|+.+++.|+|+..+.+
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 34444455579999999999999999765443 78899999999999999999999999999999999987665
Q ss_pred chhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC-----CCC--hhhHHHhhcChhhhhhhhhhcc
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY-----SGD--PASALLEMLDPEQNANFLDHYL 489 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~-----~~~--~~~all~~ld~~q~~~f~d~~~ 489 (1230)
.. +|+|+.+..|++.|..|+...| ||||||||.|+..+ .|| ....|+|+|.. +|.|
T Consensus 222 Vq---------KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q------lDGF- 285 (406)
T COG1222 222 VQ---------KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ------LDGF- 285 (406)
T ss_pred HH---------HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh------ccCC-
Confidence 55 8999999999999999999887 88899999998543 233 24567777643 2221
Q ss_pred CccccCCceEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHH
Q psy8969 490 DVPVDLSRVLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLI 565 (1230)
Q Consensus 490 ~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li 565 (1230)
-...+|-+|++||++|.|||||++ ||+. |+|+.+..+.+.+|++= ...++....+++.+.+ .++++...+.|
T Consensus 286 ---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I-HtrkM~l~~dvd~e~la~~~~g~sGAdl 361 (406)
T COG1222 286 ---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKI-HTRKMNLADDVDLELLARLTEGFSGADL 361 (406)
T ss_pred ---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHH-HhhhccCccCcCHHHHHHhcCCCchHHH
Confidence 235799999999999999999998 9984 77777777777777654 4466666666766655 56788889999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHH
Q psy8969 566 KNYCRESGVRNLQKHIEKVTRKV 588 (1230)
Q Consensus 566 ~~~~~e~gvR~l~~~i~~i~r~~ 588 (1230)
+..|.|||+.+|++.-..|...-
T Consensus 362 kaictEAGm~AiR~~R~~Vt~~D 384 (406)
T COG1222 362 KAICTEAGMFAIRERRDEVTMED 384 (406)
T ss_pred HHHHHHHhHHHHHhccCeecHHH
Confidence 99999999999988766665543
No 13
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=4.6e-26 Score=291.85 Aligned_cols=386 Identities=23% Similarity=0.299 Sum_probs=279.9
Q ss_pred CCChhHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-HHH
Q psy8969 190 VDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIG-----REVEEKVKQQHRKYI-LQE 263 (1230)
Q Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~q~~~~-l~e 263 (1230)
-+....|+|.+++.+.++.+++++.| +|+++.+..|..|++.++.++++. +++++++++.|++|+ |++
T Consensus 387 pdkAi~LiD~aaa~~rl~~~~kp~~L------~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~e 460 (857)
T PRK10865 387 PDKAIDLIDEAASSIRMQIDSKPEEL------DRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEE 460 (857)
T ss_pred ChHHHHHHHHHhcccccccccChHHH------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556799999999999999999888 899999999999999998887776 678899999999999 999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCCCCh----------hHHHHHHHHHHHhccCCC-----CCCc--cchhhhH
Q psy8969 264 QLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPP----------PVMEVLNEELAKLGFLES-----HSSE--FNVTRNY 326 (1230)
Q Consensus 264 q~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~e~~~l~~~~~-----~~~e--~~v~~~y 326 (1230)
|++++++++|.. ++..+++++++++++++.-.. .....+.+++..++.... ..++ ..-+..-
T Consensus 461 q~k~~k~el~~~-~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~v 539 (857)
T PRK10865 461 EWKAEKASLSGT-QTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEV 539 (857)
T ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHH
Confidence 999999999943 334455667777776553221 122223444444432211 1111 1112233
Q ss_pred HHHhhcCCCCCccc-ccccHHHHhhhhcccccChHHHHHHHHHHHHHhh--hcCCCCC-ceEEEeCCCCCCchHHHHHHH
Q psy8969 327 LDWLTSLPWGIQSE-ENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQ--LKGTTQG-KILCFYGPPGVGKTSIAKSIA 402 (1230)
Q Consensus 327 l~~~~~lpw~~~~~-~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~--~~~~~~~-~~llL~GPPG~GKTslak~iA 402 (1230)
+...+.+|-++-.. +.-.+...++.|.+.++|++.+.+.|.+.+.... +....+| ..++|+||||||||++|++||
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa 619 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALA 619 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 44458999996554 4567889999999999999999999999886543 2222333 368899999999999999999
Q ss_pred HHh---CCCeEEEecCCcch---hHHHhhccccccccCchh-HHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhh
Q psy8969 403 RAL---NREYFRFSVGGMSD---VAEIKGHRRTYVGAMPGK-VIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEM 475 (1230)
Q Consensus 403 ~~l---~~~~~~~~~~~~~d---~~~i~g~~~~~~g~~~g~-i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ 475 (1230)
+.+ +.+|++++++...+ .+.+.|....|+|...|. +..+++ .....||||||||++. .+..+.|+++
T Consensus 620 ~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~--~~p~~vLllDEieka~----~~v~~~Ll~i 693 (857)
T PRK10865 620 NFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR--RRPYSVILLDEVEKAH----PDVFNILLQV 693 (857)
T ss_pred HHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH--hCCCCeEEEeehhhCC----HHHHHHHHHH
Confidence 988 45789888765543 233445555566655433 332322 2233599999999974 4578899999
Q ss_pred cChhhhhhhhhhccCccccCCceEEEEecCCC-------------------------CCCCHhhhccc-ceeecCCCCHH
Q psy8969 476 LDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------------------------DTIPEPLRDRM-EMIDVSGYVAE 529 (1230)
Q Consensus 476 ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------------------------~~I~~~L~~R~-~~i~~~~~~~~ 529 (1230)
||... +.|. .+..+|+++.+||+|+|.. ....|+|++|+ .+|.+.+++.+
T Consensus 694 le~g~---l~d~-~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~e 769 (857)
T PRK10865 694 LDDGR---LTDG-QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQ 769 (857)
T ss_pred HhhCc---eecC-CceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHH
Confidence 97642 2332 3566899999999999973 23557999999 57889999999
Q ss_pred HHHHHHHHhhcc--hhHHhcCCCCCCcccCHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHH-HHHHHhhc
Q psy8969 530 EKVAIAAQYLIP--QAMKESGLSPEQITLEPSAIQVLIK-NYCRESGVRNLQKHIEKVTRK-VALTIVKK 595 (1230)
Q Consensus 530 e~~~i~~~~l~~--~~~~~~gl~~~~i~~~~~~~~~li~-~~~~e~gvR~l~~~i~~i~r~-~~~~~~~~ 595 (1230)
+...|+..++-. +.+++.|+ .+.++++++..|++ .|..+.|+|.|+|.|...+.. .|..++.+
T Consensus 770 dl~~Iv~~~L~~l~~rl~~~gi---~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL~g 836 (857)
T PRK10865 770 HIASIAQIQLQRLYKRLEERGY---EIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSG 836 (857)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC---cCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHHcC
Confidence 998988887743 22344454 46899999999987 488899999999999998766 66677654
No 14
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.94 E-value=1.8e-27 Score=281.33 Aligned_cols=258 Identities=21% Similarity=0.341 Sum_probs=200.9
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhh-----------
Q psy8969 263 EQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLT----------- 331 (1230)
Q Consensus 263 eq~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~----------- 331 (1230)
+|++.+.++|+.+.+....++++++++++...-|+.+...+.++++.-.-+-..++.+.++.+|..|+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~ 97 (389)
T PRK03992 18 RQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPGARVA 97 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccCCHhHCCCCCEEE
Confidence 666677777764434445677889999998888888888888888887777778888888888888766
Q ss_pred ----------cCCCCCccc-ccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCC
Q psy8969 332 ----------SLPWGIQSE-ENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVG 393 (1230)
Q Consensus 332 ----------~lpw~~~~~-~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~G 393 (1230)
-|||..... ..+++.....+..+|++|+++.++.|.+++.....+ |...++++||+||||||
T Consensus 98 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtG 177 (389)
T PRK03992 98 LNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTG 177 (389)
T ss_pred EcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCC
Confidence 688886543 456777777888899999999999999998664333 45678899999999999
Q ss_pred chHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCCh----
Q psy8969 394 KTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDP---- 468 (1230)
Q Consensus 394 KTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~---- 468 (1230)
||++|++||+.++.+|+.++.+.+.. .|+|+.+..+.+.|..+....| ||||||||.++..+.++.
T Consensus 178 KT~lAkaia~~~~~~~i~v~~~~l~~---------~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~ 248 (389)
T PRK03992 178 KTLLAKAVAHETNATFIRVVGSELVQ---------KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGD 248 (389)
T ss_pred hHHHHHHHHHHhCCCEEEeehHHHhH---------hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCcc
Confidence 99999999999999999998654433 6889999999999998887666 889999999975432221
Q ss_pred ---hhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhh
Q psy8969 469 ---ASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 469 ---~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l 539 (1230)
...|+++|.. ++...+.++|.||+|||.++.||++|++ ||+ .|.++.|+.++...|++.++
T Consensus 249 ~~~~~~l~~lL~~----------ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 249 REVQRTLMQLLAE----------MDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred HHHHHHHHHHHHh----------ccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 1223333211 1111234689999999999999999997 897 58999999999999998766
No 15
>KOG1074|consensus
Probab=99.92 E-value=4.2e-26 Score=270.50 Aligned_cols=59 Identities=39% Similarity=0.786 Sum_probs=55.2
Q ss_pred ccCCCCCCCCCCchhhhccccccCCCCcccCCcccccccccCchhhhhhcccccCCCCEee
Q psy8969 1137 NVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197 (1230)
Q Consensus 1137 y~C~~CgK~F~s~s~Lk~H~R~HTGEKPykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C 1197 (1230)
+.|..|||.|.++++|..|||+|||+|||.|. +|++.|.++++|+.||.+|.+..|+.=
T Consensus 880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~--fC~~aFttrgnLKvHMgtH~w~q~~sr 938 (958)
T KOG1074|consen 880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCH--FCEEAFTTRGNLKVHMGTHMWVQPPSR 938 (958)
T ss_pred hhhccchhcccchHHHHHhhhcCCCCCCccch--hhhhhhhhhhhhhhhhccccccCCCcc
Confidence 78999999999999999999999999999995 599999999999999999998887643
No 16
>KOG0738|consensus
Probab=99.92 E-value=8.7e-26 Score=250.96 Aligned_cols=243 Identities=26% Similarity=0.370 Sum_probs=178.1
Q ss_pred hhhhcccccChHHHHHHHHHHHHHhhh-----cCC-CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHH
Q psy8969 349 AKILDDDHYGMEDVKKRILEFIAVSQL-----KGT-TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAE 422 (1230)
Q Consensus 349 ~~~l~~d~~G~~~vK~~i~e~l~~~~~-----~~~-~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~ 422 (1230)
.+|=++|+.||.++|+-|.|.+-...+ .|. .+.+++|++||||||||+||||+|.+.|..||.++.+.+.+
T Consensus 207 p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS--- 283 (491)
T KOG0738|consen 207 PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS--- 283 (491)
T ss_pred CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh---
Confidence 345678999999999999998754432 233 34589999999999999999999999999999999888777
Q ss_pred HhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCCh--------hhHHHhhcChhhhhhhhhhccCccc
Q psy8969 423 IKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDP--------ASALLEMLDPEQNANFLDHYLDVPV 493 (1230)
Q Consensus 423 i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~--------~~all~~ld~~q~~~f~d~~~~~~~ 493 (1230)
+|-|+++..|+-.|..|+-..| +|||||||.|.+.+.++. -+-||-.+|..++. .
T Consensus 284 ------KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t----------~ 347 (491)
T KOG0738|consen 284 ------KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGT----------L 347 (491)
T ss_pred ------hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccc----------c
Confidence 7999999999999999988776 999999999987554432 14466556654432 3
Q ss_pred cCCc-eEEEEecCCCCCCCHhhhcccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhhh
Q psy8969 494 DLSR-VLFICTANVIDTIPEPLRDRMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYCR 570 (1230)
Q Consensus 494 d~s~-v~~I~TaN~~~~I~~~L~~R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~~ 570 (1230)
+.++ |+++++||.+-+||+|||+||+- |-++-++.+....++ +.+++.+.....+..+++ ..++...+..|.+.||
T Consensus 348 e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li-~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 348 ENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALI-KILLRSVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred ccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHH-HHhhccccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 4444 55558999999999999999995 555555555554444 334444444443433333 3445666778999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 571 ESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 571 e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
++.+-.++|.|..+.+...+.+..+... ..|+..++++.+.
T Consensus 427 eAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~ 467 (491)
T KOG0738|consen 427 EASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALR 467 (491)
T ss_pred HHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHH
Confidence 9999999999999887655544433322 3467777766553
No 17
>KOG0730|consensus
Probab=99.91 E-value=4.1e-25 Score=260.78 Aligned_cols=215 Identities=24% Similarity=0.364 Sum_probs=164.2
Q ss_pred HHHhhhhcccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcc
Q psy8969 346 TQAAKILDDDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS 418 (1230)
Q Consensus 346 ~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~ 418 (1230)
....++-|+|++||+++|+.+.+.+.+.... |..+++++|||||||||||++||+||++.+.+|+.+....+.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 3445667899999999999999888665433 678899999999999999999999999999999988765544
Q ss_pred hhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChh-------hHHHhhcChhhhhhhhhhccC
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPA-------SALLEMLDPEQNANFLDHYLD 490 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~-------~all~~ld~~q~~~f~d~~~~ 490 (1230)
+ +|+|+++..|++.|++|+...| ||||||||.++..+.|+.. +.||..||.
T Consensus 506 s---------k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG------------ 564 (693)
T KOG0730|consen 506 S---------KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDG------------ 564 (693)
T ss_pred H---------HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccc------------
Confidence 4 7999999999999999999877 8889999999877755544 334443333
Q ss_pred ccccCCceEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHH
Q psy8969 491 VPVDLSRVLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIK 566 (1230)
Q Consensus 491 ~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~ 566 (1230)
-...++|++|++||+++.||+||++ ||+- |.++.+..+-.++|++.++ .++-....++.+++ ..++...++-|.
T Consensus 565 -~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~-kkmp~~~~vdl~~La~~T~g~SGAel~ 642 (693)
T KOG0730|consen 565 -LEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA-KKMPFSEDVDLEELAQATEGYSGAEIV 642 (693)
T ss_pred -ccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHH-hcCCCCccccHHHHHHHhccCChHHHH
Confidence 1234799999999999999999999 9995 5566566666677777665 22222222333333 234555567788
Q ss_pred HhhhhhhHHHHHHHHHH
Q psy8969 567 NYCRESGVRNLQKHIEK 583 (1230)
Q Consensus 567 ~~~~e~gvR~l~~~i~~ 583 (1230)
..|+||+...+++.|+.
T Consensus 643 ~lCq~A~~~a~~e~i~a 659 (693)
T KOG0730|consen 643 AVCQEAALLALRESIEA 659 (693)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88899988888888773
No 18
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.91 E-value=9e-24 Score=249.42 Aligned_cols=261 Identities=23% Similarity=0.328 Sum_probs=197.4
Q ss_pred ccHHHHhhhhcccccChHHHHHHHHHHHHH--hhhcC--------CCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE
Q psy8969 343 LDLTQAAKILDDDHYGMEDVKKRILEFIAV--SQLKG--------TTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF 412 (1230)
Q Consensus 343 ~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~--~~~~~--------~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~ 412 (1230)
.........||+.++||+.+|+.+...+.. ..+.. ......+||+||||||||++|++||+.++.||+++
T Consensus 60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i 139 (412)
T PRK05342 60 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIA 139 (412)
T ss_pred CCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence 458888999999999999999988655421 12211 11236799999999999999999999999999999
Q ss_pred ecCCcchhHHHhhccccccccCchhHHHHHHh------hcCCCCEEEEecccccCCCCC---------C-ChhhHHHhhc
Q psy8969 413 SVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKK------TKTENPLVLIDEVDKIGKGYS---------G-DPASALLEML 476 (1230)
Q Consensus 413 ~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~------~~~~~pvillDEIDk~~~~~~---------~-~~~~all~~l 476 (1230)
+...+.. ..|+|...+.++..+.. ....+.||||||||++.+... | +..++||++|
T Consensus 140 d~~~l~~--------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 140 DATTLTE--------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred chhhccc--------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence 8765443 25888876666544322 233567999999999975411 1 2568999999
Q ss_pred Ch------hhhhhhhhhccCccccCCceEEEEecCCCC------------------------------------------
Q psy8969 477 DP------EQNANFLDHYLDVPVDLSRVLFICTANVID------------------------------------------ 508 (1230)
Q Consensus 477 d~------~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~------------------------------------------ 508 (1230)
|. .+.....++...+.+|.+|++|||+.+...
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~ 291 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLI 291 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHH
Confidence 83 334445555556779999999997665210
Q ss_pred --CCCHhhhcccce-eecCCCCHHHHHHHHHH---hhcchhHHhcCCCCCCcccCHHHHHHHHHH-hhhhhhHHHHHHHH
Q psy8969 509 --TIPEPLRDRMEM-IDVSGYVAEEKVAIAAQ---YLIPQAMKESGLSPEQITLEPSAIQVLIKN-YCRESGVRNLQKHI 581 (1230)
Q Consensus 509 --~I~~~L~~R~~~-i~~~~~~~~e~~~i~~~---~l~~~~~~~~gl~~~~i~~~~~~~~~li~~-~~~e~gvR~l~~~i 581 (1230)
.+.|+|+.|+++ +.|.+++.++...|+.. .++.+..+......-.+.++++++.+|++. |.++.|+|.|++.|
T Consensus 292 ~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrrii 371 (412)
T PRK05342 292 KFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSIL 371 (412)
T ss_pred HHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHH
Confidence 147889999985 57778999999999873 566655444445556789999999999986 99999999999999
Q ss_pred HHHHHHHHHHHhhc-CCCceEechhhhhhhc
Q psy8969 582 EKVTRKVALTIVKK-ESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 582 ~~i~r~~~~~~~~~-~~~~~~i~~~~~~~~~ 611 (1230)
+++++..+.++... ....++|+.+.+.++.
T Consensus 372 e~~l~~~~~~~p~~~~~~~v~I~~~~v~~~~ 402 (412)
T PRK05342 372 EEILLDVMFELPSREDVEKVVITKEVVEGKA 402 (412)
T ss_pred HHHhHHHHHhccccCCCceEEECHHHhcccc
Confidence 99999999999874 3456899999998773
No 19
>KOG0727|consensus
Probab=99.91 E-value=1.3e-24 Score=228.68 Aligned_cols=215 Identities=23% Similarity=0.353 Sum_probs=165.2
Q ss_pred ccccChHHHHHHHHHHHHHh-------hhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhc
Q psy8969 354 DDHYGMEDVKKRILEFIAVS-------QLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGH 426 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~-------~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~ 426 (1230)
.|++|++--|+.|.|.+... +.-|..+|+++|||||||||||+||+++|+...+.|+|+..+....
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq------- 227 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ------- 227 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH-------
Confidence 48999999999999988543 3347889999999999999999999999999999999998654433
Q ss_pred cccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC-------CCChhhHHHhhcChhhhhhhhhhccCccccCCce
Q psy8969 427 RRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY-------SGDPASALLEMLDPEQNANFLDHYLDVPVDLSRV 498 (1230)
Q Consensus 427 ~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~-------~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v 498 (1230)
+|.|+.|.+++..|+.++.+.| ||||||||.|+..+ .......|+|+|.. .+.| -...||
T Consensus 228 --kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnq--mdgf--------dq~~nv 295 (408)
T KOG0727|consen 228 --KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ--MDGF--------DQTTNV 295 (408)
T ss_pred --HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHh--ccCc--------Ccccce
Confidence 8999999999999999999887 88899999997432 12234567777653 2221 123589
Q ss_pred EEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhhhhhhH
Q psy8969 499 LFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 499 ~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~~e~gv 574 (1230)
-+|++||+.+++||||++ |++. |+|+-+...+| .++...+..++.....++.+.+ .-++....+.|...|.|+|+
T Consensus 296 kvimatnradtldpallrpgrldrkiefplpdrrqk-rlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm 374 (408)
T KOG0727|consen 296 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQK-RLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGM 374 (408)
T ss_pred EEEEecCcccccCHhhcCCccccccccCCCCchhhh-hhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhH
Confidence 999999999999999997 7875 66664444444 5555666666655555555544 44456667889999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy8969 575 RNLQKHIEKVTRKV 588 (1230)
Q Consensus 575 R~l~~~i~~i~r~~ 588 (1230)
...+..-.-|+.+-
T Consensus 375 ~avr~nryvvl~kd 388 (408)
T KOG0727|consen 375 LAVRENRYVVLQKD 388 (408)
T ss_pred HHHHhcceeeeHHH
Confidence 99887666655543
No 20
>KOG3623|consensus
Probab=99.91 E-value=6.8e-25 Score=255.17 Aligned_cols=108 Identities=29% Similarity=0.633 Sum_probs=95.9
Q ss_pred CCCCCCCCCCCCccChhHHHhhhhc-cc-CCCceecCCCccCccccChhhHHHHHhhccC-------------CCCcccc
Q psy8969 791 PFPCPVLGCDRSFTTSNIRKVHIRT-HT-GEKPYVCGEAGCDKSFASATNYKNHMRIHSG-------------EKPYVCQ 855 (1230)
Q Consensus 791 p~~C~~~~C~k~F~~~~~L~~H~r~-H~-gekpy~C~~~~Cgk~F~~~s~L~~H~r~Htg-------------ekpy~C~ 855 (1230)
...|++ |.+.+.....|+.|+.. |. .+..|.|.. |..+|..+..|.+|+.+|.. .+-|+|.
T Consensus 210 lltcpy--cdrgykrltslkeHikyrhekne~nfsC~l--CsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCt 285 (1007)
T KOG3623|consen 210 LLTCPY--CDRGYKRLTSLKEHIKYRHEKNEPNFSCML--CSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCT 285 (1007)
T ss_pred hhcchh--HHHHHHHHHHHHHHHHHHHhhCCCCCcchh--hhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccccc
Confidence 467998 99999999999999874 43 355699998 99999999999999998852 3679997
Q ss_pred ccccccccCCchhHhhhhccccCCCCccCCCCCcccCChhhHHhHHhhh
Q psy8969 856 VRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 904 (1230)
Q Consensus 856 ~~~C~k~F~~~~~L~~H~~~H~~ekpy~C~~Cgk~F~~~~~L~~H~k~h 904 (1230)
+|||.|.-+..|+.|+|+|+|||||.|+.|+|.|........|+...
T Consensus 286 --ECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSK 332 (1007)
T KOG3623|consen 286 --ECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSK 332 (1007)
T ss_pred --ccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccccc
Confidence 69999999999999999999999999999999999999999998643
No 21
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.91 E-value=1.2e-22 Score=258.30 Aligned_cols=292 Identities=24% Similarity=0.379 Sum_probs=222.0
Q ss_pred HhcCCCChhHHHHHHHHHHHhccCCCCCCcc-ch----hhhHHHHhhcCCCCCccc-ccccHHHHhhhhcccccChHHHH
Q psy8969 290 IKDKKVPPPVMEVLNEELAKLGFLESHSSEF-NV----TRNYLDWLTSLPWGIQSE-ENLDLTQAAKILDDDHYGMEDVK 363 (1230)
Q Consensus 290 ~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~-~v----~~~yl~~~~~lpw~~~~~-~~~~~~~~~~~l~~d~~G~~~vK 363 (1230)
|....+|+.+.+.++.=..+. +|.+...+. .| +.+++.+++.+||...+. +...+...++.|++.++||++++
T Consensus 385 i~~r~~P~kai~lld~a~a~~-~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai 463 (731)
T TIGR02639 385 INDRFLPDKAIDVIDEAGASF-RLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAI 463 (731)
T ss_pred cccccCCHHHHHHHHHhhhhh-hcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHH
Confidence 444568998888877544433 343332222 23 689999999999987654 46689999999999999999999
Q ss_pred HHHHHHHHHhhh--cCCCCCc-eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcch---hHHHhhccccccccCchh
Q psy8969 364 KRILEFIAVSQL--KGTTQGK-ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSD---VAEIKGHRRTYVGAMPGK 437 (1230)
Q Consensus 364 ~~i~e~l~~~~~--~~~~~~~-~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d---~~~i~g~~~~~~g~~~g~ 437 (1230)
+.|.+.+..... ....+|. .+||+||||||||++|++||+.++.+|++++++...+ .+.+.|....|+|...|.
T Consensus 464 ~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~ 543 (731)
T TIGR02639 464 DSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGG 543 (731)
T ss_pred HHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhh
Confidence 999998865432 2223333 5899999999999999999999999999999876543 344556666677765543
Q ss_pred -HHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC--------
Q psy8969 438 -VIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID-------- 508 (1230)
Q Consensus 438 -i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~-------- 508 (1230)
+.++++. ....|||||||||+. .+..+.||++||.. .+.|. .+..+|+++++||+|||.-.
T Consensus 544 ~l~~~~~~--~p~~VvllDEieka~----~~~~~~Ll~~ld~g---~~~d~-~g~~vd~~~~iii~Tsn~g~~~~~~~~~ 613 (731)
T TIGR02639 544 LLTEAVRK--HPHCVLLLDEIEKAH----PDIYNILLQVMDYA---TLTDN-NGRKADFRNVILIMTSNAGASEMSKPPI 613 (731)
T ss_pred HHHHHHHh--CCCeEEEEechhhcC----HHHHHHHHHhhccC---eeecC-CCcccCCCCCEEEECCCcchhhhhhccC
Confidence 4444432 345699999999984 56889999999863 34444 46789999999999999732
Q ss_pred -----------------CCCHhhhcccc-eeecCCCCHHHHHHHHHHhhcc--hhHHhcCCCCCCcccCHHHHHHHHHH-
Q psy8969 509 -----------------TIPEPLRDRME-MIDVSGYVAEEKVAIAAQYLIP--QAMKESGLSPEQITLEPSAIQVLIKN- 567 (1230)
Q Consensus 509 -----------------~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~~--~~~~~~gl~~~~i~~~~~~~~~li~~- 567 (1230)
.++|+|++|++ +|.|.+++.++...|+.+.+-. +.+.+.|+ .+.++++++.+|++.
T Consensus 614 ~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~---~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 614 GFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI---KLELTDDAKKYLAEKG 690 (731)
T ss_pred CcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC---eEEeCHHHHHHHHHhC
Confidence 25889999997 8899999999999999988732 33444444 689999999999975
Q ss_pred hhhhhhHHHHHHHHHHHHHH-HHHHHhhc
Q psy8969 568 YCRESGVRNLQKHIEKVTRK-VALTIVKK 595 (1230)
Q Consensus 568 ~~~e~gvR~l~~~i~~i~r~-~~~~~~~~ 595 (1230)
|..+.|+|.|+|.|+..+.. .+..++.+
T Consensus 691 ~~~~~GaR~l~r~i~~~~~~~l~~~~l~~ 719 (731)
T TIGR02639 691 YDEEFGARPLARVIQEEIKKPLSDEILFG 719 (731)
T ss_pred CCcccCchHHHHHHHHHhHHHHHHHHHhC
Confidence 99999999999999997766 46666654
No 22
>KOG0736|consensus
Probab=99.90 E-value=1.7e-23 Score=248.45 Aligned_cols=240 Identities=23% Similarity=0.361 Sum_probs=167.9
Q ss_pred hhhhcccccChHHHHHHHHHHHHHhhh------cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHH
Q psy8969 349 AKILDDDHYGMEDVKKRILEFIAVSQL------KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAE 422 (1230)
Q Consensus 349 ~~~l~~d~~G~~~vK~~i~e~l~~~~~------~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~ 422 (1230)
-++-|+|++|++++|..|++-|..... .|..+-.+||||||||||||.+|||+|.++...|+.+-.-.+-.
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN--- 743 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN--- 743 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH---
Confidence 456679999999999999999865322 24445678999999999999999999999999997665433222
Q ss_pred HhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCC--CCCCChh-------hHHHhhcChhhhhhhhhhccCcc
Q psy8969 423 IKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGK--GYSGDPA-------SALLEMLDPEQNANFLDHYLDVP 492 (1230)
Q Consensus 423 i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~--~~~~~~~-------~all~~ld~~q~~~f~d~~~~~~ 492 (1230)
.|||.++..+++.|.+|+...| |||+||||.+++ ++.||-. +.||..||. +.
T Consensus 744 ------MYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg------------ls 805 (953)
T KOG0736|consen 744 ------MYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG------------LS 805 (953)
T ss_pred ------HHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc------------cc
Confidence 6999999999999999999877 888999999985 3456543 344444443 22
Q ss_pred c-cCCceEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc--ccCHHHHHHHHH
Q psy8969 493 V-DLSRVLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI--TLEPSAIQVLIK 566 (1230)
Q Consensus 493 ~-d~s~v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i--~~~~~~~~~li~ 566 (1230)
- +...|++|.+||++|-|||+|++ ||+- +.+....+.|...-+-+.+..+...+.+++..+| ......-++..=
T Consensus 806 ~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlY 885 (953)
T KOG0736|consen 806 DSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLY 885 (953)
T ss_pred CCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHH
Confidence 2 45689999999999999999998 9995 4555555555555555666666555666655544 112222233333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhh
Q psy8969 567 NYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDF 610 (1230)
Q Consensus 567 ~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~ 610 (1230)
..|..|++-+++|.+..+-....-. .+.+...++|+.+++-+.
T Consensus 886 sLCSdA~l~AikR~i~~ie~g~~~~-~e~~~~~v~V~~eDflks 928 (953)
T KOG0736|consen 886 SLCSDAMLAAIKRTIHDIESGTISE-EEQESSSVRVTMEDFLKS 928 (953)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccc-cccCCceEEEEHHHHHHH
Confidence 4456777777777776655432211 233445688888776543
No 23
>KOG2462|consensus
Probab=99.90 E-value=1.5e-24 Score=232.41 Aligned_cols=77 Identities=38% Similarity=0.759 Sum_probs=73.2
Q ss_pred cCCCCCCCCCCchhhhccccccCCCCcccCCcccccccccCchhhhhhcccccCCCCEeecccccCccccchhhHHHHhh
Q psy8969 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR 1217 (1230)
Q Consensus 1138 ~C~~CgK~F~s~s~Lk~H~R~HTGEKPykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF~~ks~LkrH~R 1217 (1230)
.|.+|||.|.+.=-|+-|+|+|||||||.|+ +|+|+|..+++|+.||+||++.|+|+|. .|+|+|..++.|.+|..
T Consensus 189 ~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~--hC~kAFADRSNLRAHmQTHS~~K~~qC~--~C~KsFsl~SyLnKH~E 264 (279)
T KOG2462|consen 189 ECGICGKAFSRPWLLQGHIRTHTGEKPFSCP--HCGKAFADRSNLRAHMQTHSDVKKHQCP--RCGKSFALKSYLNKHSE 264 (279)
T ss_pred ccccccccccchHHhhcccccccCCCCccCC--cccchhcchHHHHHHHHhhcCCccccCc--chhhHHHHHHHHHHhhh
Confidence 5999999999999999999999999999996 5999999999999999999999999995 69999999999999976
Q ss_pred h
Q psy8969 1218 T 1218 (1230)
Q Consensus 1218 ~ 1218 (1230)
.
T Consensus 265 S 265 (279)
T KOG2462|consen 265 S 265 (279)
T ss_pred h
Confidence 4
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.90 E-value=1.6e-23 Score=221.96 Aligned_cols=194 Identities=27% Similarity=0.387 Sum_probs=157.5
Q ss_pred CccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHH---HHHHHHHHhhhcCCCCCceEEEeCCCCCCc
Q psy8969 318 SEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKK---RILEFIAVSQLKGTTQGKILCFYGPPGVGK 394 (1230)
Q Consensus 318 ~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~---~i~e~l~~~~~~~~~~~~~llL~GPPG~GK 394 (1230)
++..++.+-.-.+++=|....+ .....+.-+|++||+++|+ -|.+||.-...-+..-|+.+||||||||||
T Consensus 91 ~~~~i~~st~i~vl~~~~~~~~------e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGK 164 (368)
T COG1223 91 SGGGIITSTTIFVLETPREEDR------EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGK 164 (368)
T ss_pred CCCceecceEEEEecCcchhhh------hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccH
Confidence 3444555544445555544333 4455566689999999995 478999888888888899999999999999
Q ss_pred hHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC-----CCCh
Q psy8969 395 TSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY-----SGDP 468 (1230)
Q Consensus 395 Tslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~-----~~~~ 468 (1230)
|++|||+|+.++.||+.+.. .++.| .|||....+|.+++.+|....| ||||||+|.|+-++ +||.
T Consensus 165 Tm~Akalane~kvp~l~vka------t~liG---ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDV 235 (368)
T COG1223 165 TMMAKALANEAKVPLLLVKA------TELIG---EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDV 235 (368)
T ss_pred HHHHHHHhcccCCceEEech------HHHHH---HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccH
Confidence 99999999999999998874 34444 5999999999999999988777 78899999998554 5776
Q ss_pred h---hHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccc-eeecCCCCHHHHHHHHHHhh
Q psy8969 469 A---SALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRME-MIDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 469 ~---~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l 539 (1230)
. +|||.-||.- .....|++|++||+++-+|+|+++||+ .|+|.-+..+|.+.|+..|+
T Consensus 236 sEiVNALLTelDgi-------------~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 236 SEIVNALLTELDGI-------------KENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred HHHHHHHHHhccCc-------------ccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 4 7888877752 234689999999999999999999998 59999999999999998886
No 25
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.89 E-value=4.5e-21 Score=245.29 Aligned_cols=259 Identities=20% Similarity=0.316 Sum_probs=196.7
Q ss_pred hHHHHhhcCCCCCccc-ccccHHHHhhhhcccccChHHHHHHHHHHHHHhh--hcCCCCCc-eEEEeCCCCCCchHHHHH
Q psy8969 325 NYLDWLTSLPWGIQSE-ENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQ--LKGTTQGK-ILCFYGPPGVGKTSIAKS 400 (1230)
Q Consensus 325 ~yl~~~~~lpw~~~~~-~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~--~~~~~~~~-~llL~GPPG~GKTslak~ 400 (1230)
.-+...+.+|+++-.. +...+...++.|.+.++||+.+.+.|.+.+.... +....+|. .+||+||||||||.+|++
T Consensus 536 ~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~ 615 (852)
T TIGR03345 536 EVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALA 615 (852)
T ss_pred HHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHH
Confidence 3344449999987654 4556899999999999999999999999986532 23233443 589999999999999999
Q ss_pred HHHHh---CCCeEEEecCCcch---hHHHhhccccccccCch-hHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHH
Q psy8969 401 IARAL---NREYFRFSVGGMSD---VAEIKGHRRTYVGAMPG-KVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALL 473 (1230)
Q Consensus 401 iA~~l---~~~~~~~~~~~~~d---~~~i~g~~~~~~g~~~g-~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all 473 (1230)
||+.| ...|++++++...+ .+.+.|....|+|...| .+..+++. ....|||||||||+. .+..+.|+
T Consensus 616 La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~--~p~svvllDEieka~----~~v~~~Ll 689 (852)
T TIGR03345 616 LAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR--KPYSVVLLDEVEKAH----PDVLELFY 689 (852)
T ss_pred HHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh--CCCcEEEEechhhcC----HHHHHHHH
Confidence 99999 45788998766543 33456777778876654 34444443 345699999999974 46788999
Q ss_pred hhcChhhhhhhhhhccCccccCCceEEEEecCCCC-----------------------------CCCHhhhcccceeecC
Q psy8969 474 EMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID-----------------------------TIPEPLRDRMEMIDVS 524 (1230)
Q Consensus 474 ~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~-----------------------------~I~~~L~~R~~~i~~~ 524 (1230)
++||... +....+..+|+++.+||+|||... ...|+|++|+++|.|.
T Consensus 690 q~ld~g~----l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~ 765 (852)
T TIGR03345 690 QVFDKGV----MEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYL 765 (852)
T ss_pred HHhhcce----eecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeC
Confidence 9998642 334457789999999999999411 2678999999999999
Q ss_pred CCCHHHHHHHHHHhhcc--hhHHhc-CCCCCCcccCHHHHHHHHHH-hhhhhhHHHHHHHHHH-HHHHHHHHHhhcC
Q psy8969 525 GYVAEEKVAIAAQYLIP--QAMKES-GLSPEQITLEPSAIQVLIKN-YCRESGVRNLQKHIEK-VTRKVALTIVKKE 596 (1230)
Q Consensus 525 ~~~~~e~~~i~~~~l~~--~~~~~~-gl~~~~i~~~~~~~~~li~~-~~~e~gvR~l~~~i~~-i~r~~~~~~~~~~ 596 (1230)
+++.++...|+...+-. +.+.+. |+ .+.++++++.+|++. |..+.|+|.|+|.|+. |....+..++.+.
T Consensus 766 pLs~e~l~~Iv~~~L~~l~~rl~~~~gi---~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l~~~ 839 (852)
T TIGR03345 766 PLDDDVLAAIVRLKLDRIARRLKENHGA---ELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQILERL 839 (852)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCc---eEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHhCh
Confidence 99999999999888732 223232 43 678999999999976 5578899999999998 5556777776543
No 26
>KOG0733|consensus
Probab=99.89 E-value=7.3e-23 Score=237.79 Aligned_cols=210 Identities=22% Similarity=0.317 Sum_probs=162.1
Q ss_pred ccccChHHHHHHHHHHHHH------hhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcc
Q psy8969 354 DDHYGMEDVKKRILEFIAV------SQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHR 427 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~------~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~ 427 (1230)
+|++|+++.-..+.+.+.. ....|..+++++||+||||||||+||++||.++|.||+.++.-.+..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS-------- 261 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS-------- 261 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc--------
Confidence 6899999999999988854 22337788999999999999999999999999999999999755554
Q ss_pred ccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCC-------ChhhHHHhhcChhhhhhhhhhccCccccCCceE
Q psy8969 428 RTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSG-------DPASALLEMLDPEQNANFLDHYLDVPVDLSRVL 499 (1230)
Q Consensus 428 ~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~-------~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~ 499 (1230)
.+.|+.+.+|++.|..|....| |+||||||.|+..+.. ...+.||..||.-. ....+-..|+
T Consensus 262 -GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~---------~~~~~g~~Vl 331 (802)
T KOG0733|consen 262 -GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELS---------NEKTKGDPVL 331 (802)
T ss_pred -ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccc---------ccccCCCCeE
Confidence 5789999999999999999877 7889999999876533 12244555555422 2233456799
Q ss_pred EEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhhhhhhHH
Q psy8969 500 FICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYCRESGVR 575 (1230)
Q Consensus 500 ~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~~e~gvR 575 (1230)
+|++||++|.|||+||+ ||+ .|.+.-+.......|++... ..+.....++..++ .++++.+++.+...|++||.-
T Consensus 332 VIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~-~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 332 VIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC-RGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred EEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH-hhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 99999999999999998 998 47777777776666664432 22222334444455 678889999999999999998
Q ss_pred HHHHHHH
Q psy8969 576 NLQKHIE 582 (1230)
Q Consensus 576 ~l~~~i~ 582 (1230)
.++|.+.
T Consensus 411 AikR~ld 417 (802)
T KOG0733|consen 411 AIKRILD 417 (802)
T ss_pred HHHHHhh
Confidence 8888433
No 27
>KOG0733|consensus
Probab=99.89 E-value=3.1e-23 Score=240.80 Aligned_cols=238 Identities=21% Similarity=0.268 Sum_probs=169.2
Q ss_pred hhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhh-------cCCCCCceEEEeCCCCCCch
Q psy8969 323 TRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQL-------KGTTQGKILCFYGPPGVGKT 395 (1230)
Q Consensus 323 ~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~-------~~~~~~~~llL~GPPG~GKT 395 (1230)
.-.|-|++-.|+--..+-...-+...-.+-|+|++||++|+..+..+|.+... -|...|.++||+||||||||
T Consensus 480 ~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKT 559 (802)
T KOG0733|consen 480 SIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKT 559 (802)
T ss_pred eecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHH
Confidence 34555665555555555444555556677899999999999999988865433 36778899999999999999
Q ss_pred HHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCCh------
Q psy8969 396 SIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDP------ 468 (1230)
Q Consensus 396 slak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~------ 468 (1230)
.||||+|++.|.+|+.+-...+-. +|||+.+..|++.|.+|+...| |||+||||.+.+.+....
T Consensus 560 LlAKAVANEag~NFisVKGPELlN---------kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~R 630 (802)
T KOG0733|consen 560 LLAKAVANEAGANFISVKGPELLN---------KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSR 630 (802)
T ss_pred HHHHHHhhhccCceEeecCHHHHH---------HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHH
Confidence 999999999999998765433332 7999999999999999999877 889999999986543222
Q ss_pred -hhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhc--cccee-ecCCCCHHHHHHHHHHhhcc-hh
Q psy8969 469 -ASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRD--RMEMI-DVSGYVAEEKVAIAAQYLIP-QA 543 (1230)
Q Consensus 469 -~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~~i-~~~~~~~~e~~~i~~~~l~~-~~ 543 (1230)
.+.||..||.- -+-.+|.+|++||++|-||||+|+ ||+-+ .+..+..+|+..|++...-. +.
T Consensus 631 vvNqLLtElDGl-------------~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~ 697 (802)
T KOG0733|consen 631 VVNQLLTELDGL-------------EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKP 697 (802)
T ss_pred HHHHHHHHhccc-------------ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCC
Confidence 23444444431 244689999999999999999998 99854 55666788999988765421 11
Q ss_pred HHhcCCCCCCccc-C--HHHHHHHHHHhhhhhhHHHHHHHHH
Q psy8969 544 MKESGLSPEQITL-E--PSAIQVLIKNYCRESGVRNLQKHIE 582 (1230)
Q Consensus 544 ~~~~gl~~~~i~~-~--~~~~~~li~~~~~e~gvR~l~~~i~ 582 (1230)
....+++.+.|.- + +..-++.+...+||+.+-.|++.+.
T Consensus 698 pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 698 PLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred CCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 1122232222211 1 1233344455557888888877776
No 28
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1e-22 Score=248.87 Aligned_cols=321 Identities=21% Similarity=0.323 Sum_probs=201.6
Q ss_pred cCCCCEEEEecccccCCCCCCChhhHHHhh-cCh-----hhhhhhhhhcc---CccccCCceEEEEecCC--CCCCCHhh
Q psy8969 446 KTENPLVLIDEVDKIGKGYSGDPASALLEM-LDP-----EQNANFLDHYL---DVPVDLSRVLFICTANV--IDTIPEPL 514 (1230)
Q Consensus 446 ~~~~pvillDEIDk~~~~~~~~~~~all~~-ld~-----~q~~~f~d~~~---~~~~d~s~v~~I~TaN~--~~~I~~~L 514 (1230)
+.+..|+|||||+-++.. ....+|.. +|. .++.......+ .+|. .+.+|+..|+ +..+.+++
T Consensus 223 kAngGVLiIdei~lL~~~----~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~---d~klI~~Gn~~~l~~l~~~~ 295 (647)
T COG1067 223 KANGGVLIIDEIGLLAQP----LQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPL---DLKLILAGNREDLEDLHEPD 295 (647)
T ss_pred cccCcEEEEEhhhhhCcH----HHHHHHHHHHhccccccCcCccccCcccCCCCccc---ceEEEeeCCHHHHHhhcccC
Confidence 456789999999988531 12333333 322 12211111111 1222 3455665664 56788888
Q ss_pred hcccce----eecCCC---CHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHH----HHHHHH
Q psy8969 515 RDRMEM----IDVSGY---VAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNL----QKHIEK 583 (1230)
Q Consensus 515 ~~R~~~----i~~~~~---~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l----~~~i~~ 583 (1230)
.+|.+. .++..+ ++++....+..+. ..+.++.+ -..++.+|+..||+.-.|.+|-++- -|.|..
T Consensus 296 ~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~-q~v~~d~~----ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~ 370 (647)
T COG1067 296 RSRIEGFGYEAEFEDTMPITDANRSKLVQFYV-QELARDGN----IPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGN 370 (647)
T ss_pred HHHHhhcceEEEEcCCCCCChHHHHHHHHHHH-HHHHhcCC----CCCCCHHHHHHHHHHHHHhccccceeccCHHHHHH
Confidence 888765 333332 4556555554433 33333323 3468999999999998888887742 256777
Q ss_pred HHHHHHHHHhhcCCCceEechhhhhhhcCCCccccccc----------------ccCCCCceEEeeeeeeeccCC-----
Q psy8969 584 VTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRL----------------FEITPPGVVTRKVALTIVKKE----- 642 (1230)
Q Consensus 584 i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------------~~~~~~g~~~~~~~~~~~~~~----- 642 (1230)
+++ .|..++..+. ...|+.+++++.+.........+ .....+|.++|+ +...+++.
T Consensus 371 lv~-~A~~ia~~~~-~~~I~ae~Ve~a~~~~~~~e~~l~e~~~~~~~~~~~li~t~G~~VG~ingL-sV~~~~~~~~~g~ 447 (647)
T COG1067 371 LVR-EAGDIAVSEG-RKLITAEDVEEALQKRELREGQLAERYIEDIKGGQILIETEGERVGQINGL-SVIEVPGHHAFGE 447 (647)
T ss_pred HHH-HhhHHHhcCC-cccCcHHHHHHHHHhhhhHHHHHHHHHHHHHhcceEEEeeccceeeeeeee-EEEecCCcccccc
Confidence 777 5555655543 33588888887776533322111 234578888885 43333221
Q ss_pred -----------cceEEEec-------------cccccccCCCCcccccccccCCCcceeeeeccccCcCCCCCchhHHHH
Q psy8969 643 -----------SDKVTVTN-------------DNLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITIT 698 (1230)
Q Consensus 643 -----------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~ 698 (1230)
.|.+.-++ ..+.+..+.+.+. .++|+-++.+.+..-.| .--|||||++|++
T Consensus 448 p~~is~~~~~g~g~i~d~er~~~lag~I~~k~~mI~~~~~~~~~~-~d~~i~fs~s~~~eqsy----~~vDGDSAS~A~~ 522 (647)
T COG1067 448 PARISCAVHKGDGEIVDIERKAELAGNIHNKGMMIKQAFLMSILN-YDIHIPFSASLVFEQSY----GEVDGDSASLAEA 522 (647)
T ss_pred eeEEEeEEecCCCceeehhhhhhhhhhHHHHHHHHHHHhcCCccc-CceeeEEeeEEEEEeec----ccccCchHHHHHH
Confidence 12221111 1111111112221 23444444332111111 1239999999999
Q ss_pred HHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHH-------HHHHcCcceeecCccccccccCchh---hHh-hc
Q psy8969 699 TALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTI-------AAKRVGVHTILMPEENKKDFTDLPE---YIR-EG 767 (1230)
Q Consensus 699 ~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~-------aa~r~gi~~vi~p~~N~kDl~elPe---~vr-~~ 767 (1230)
|||+|||++.||+++|||||+|+++|.|+|||||.||+- +|.++|.+.||||+.|.+|+.--.+ -|+ ..
T Consensus 523 ~aliSAl~~~Pv~Q~iAiTGsi~q~G~VqpVGGV~eKIEgf~~~c~~~~~~G~q~ViIP~~N~~~l~l~~~v~~av~~g~ 602 (647)
T COG1067 523 CALISALSKIPVDQDIAITGSIDQFGEVQPVGGVNEKIEGFFRVCQAAGLTGEQGVIIPKANVKDLSLSEDVVKAVKEGK 602 (647)
T ss_pred HHHHHHHhcCCCccceeEEeeeccCCceeecCCcchhhhhhHHHHHHHhhcCCceEEeccchHhhhhccHHHHHHhhcCc
Confidence 999999999999999999999999999999999999999 9999999999999999999864333 334 34
Q ss_pred cceecccchhhhhhccccc
Q psy8969 768 LNVHFVSEWRQVYDLVFEH 786 (1230)
Q Consensus 768 l~i~fvs~~~eVl~ia~~h 786 (1230)
+.+..|+++++++.+++..
T Consensus 603 f~I~~V~~i~eal~~~~~~ 621 (647)
T COG1067 603 FEIWPVETIDEALELLLGK 621 (647)
T ss_pred eEEEEeCcHHHHHHHHhCC
Confidence 6889999999999999854
No 29
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.88 E-value=2.1e-20 Score=240.29 Aligned_cols=257 Identities=23% Similarity=0.364 Sum_probs=191.2
Q ss_pred HHHHhhcCCCCCcccccc-cHHHHhhhhcccccChHHHHHHHHHHHHHhhh--cCCCCC-ceEEEeCCCCCCchHHHHHH
Q psy8969 326 YLDWLTSLPWGIQSEENL-DLTQAAKILDDDHYGMEDVKKRILEFIAVSQL--KGTTQG-KILCFYGPPGVGKTSIAKSI 401 (1230)
Q Consensus 326 yl~~~~~lpw~~~~~~~~-~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~--~~~~~~-~~llL~GPPG~GKTslak~i 401 (1230)
-+...+.+|-..-..+.. .+...++.|.+.++||+.+.+.|...+..... ....+| ..+||+||||||||++|++|
T Consensus 480 ~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~L 559 (821)
T CHL00095 480 IVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKAL 559 (821)
T ss_pred HHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHH
Confidence 344448899987665544 48899999999999999999999998864333 333344 34789999999999999999
Q ss_pred HHHh---CCCeEEEecCCcch---hHHHhhccccccccCch-hHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHh
Q psy8969 402 ARAL---NREYFRFSVGGMSD---VAEIKGHRRTYVGAMPG-KVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLE 474 (1230)
Q Consensus 402 A~~l---~~~~~~~~~~~~~d---~~~i~g~~~~~~g~~~g-~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~ 474 (1230)
|+.+ +.++++++++...+ .+.+.|....|+|-..+ .+...+.. ....|||||||||+ +.+..++||+
T Consensus 560 A~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~--~p~~VvllDeieka----~~~v~~~Llq 633 (821)
T CHL00095 560 ASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRK--KPYTVVLFDEIEKA----HPDIFNLLLQ 633 (821)
T ss_pred HHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHh--CCCeEEEECChhhC----CHHHHHHHHH
Confidence 9998 36899998765543 33444555567776553 34444432 22359999999998 4467899999
Q ss_pred hcChhhhhhhhhhccCccccCCceEEEEecCCCCC-------------------------------------CCHhhhcc
Q psy8969 475 MLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDT-------------------------------------IPEPLRDR 517 (1230)
Q Consensus 475 ~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~-------------------------------------I~~~L~~R 517 (1230)
+||... +.| ..+..+|+++++||+|+|.... ..|.|++|
T Consensus 634 ~le~g~---~~d-~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnR 709 (821)
T CHL00095 634 ILDDGR---LTD-SKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNR 709 (821)
T ss_pred HhccCc---eec-CCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhcc
Confidence 998643 233 2456789999999999995321 24678999
Q ss_pred c-ceeecCCCCHHHHHHHHHHhhcc--hhHHhcCCCCCCcccCHHHHHHHHHH-hhhhhhHHHHHHHHHHHHH-HHHHHH
Q psy8969 518 M-EMIDVSGYVAEEKVAIAAQYLIP--QAMKESGLSPEQITLEPSAIQVLIKN-YCRESGVRNLQKHIEKVTR-KVALTI 592 (1230)
Q Consensus 518 ~-~~i~~~~~~~~e~~~i~~~~l~~--~~~~~~gl~~~~i~~~~~~~~~li~~-~~~e~gvR~l~~~i~~i~r-~~~~~~ 592 (1230)
+ ++|.|.+++.++...|+...+-. +.+.+.|+ .+.++++++..|++. |..+.|+|.|+|.|++.+. ..+..+
T Consensus 710 id~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i---~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 710 LDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGI---QLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCc---EEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 9 68899999999999999887743 22334433 589999999999986 8899999999999988775 455555
Q ss_pred hhc
Q psy8969 593 VKK 595 (1230)
Q Consensus 593 ~~~ 595 (1230)
+.+
T Consensus 787 l~~ 789 (821)
T CHL00095 787 LSF 789 (821)
T ss_pred HhC
Confidence 544
No 30
>KOG0737|consensus
Probab=99.88 E-value=3.1e-22 Score=223.78 Aligned_cols=215 Identities=23% Similarity=0.341 Sum_probs=170.3
Q ss_pred ccccChHHHHHHHHHHHHHhhhcC--------CCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKG--------TTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKG 425 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~--------~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g 425 (1230)
+|++||+.+|+.+.+.+..+.... ..++++||||||||||||.+|+++|++.|.+|+.++++++.+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~------ 165 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS------ 165 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch------
Confidence 589999999999998875433221 235689999999999999999999999999999999999998
Q ss_pred ccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC-ceEEEEe
Q psy8969 426 HRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS-RVLFICT 503 (1230)
Q Consensus 426 ~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s-~v~~I~T 503 (1230)
+|.|+....+...|..+..-.| ||||||||.+...+......|... .+..|+-.+.++.-+-+ +|+++++
T Consensus 166 ---KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~-----mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 166 ---KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAM-----MKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred ---hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHH-----HHHHHHHHhccccCCCCceEEEEeC
Confidence 6778888888888888776666 888999999875554333333332 24567777777765544 7999999
Q ss_pred cCCCCCCCHhhhcccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhhhhhhHHHHHHHH
Q psy8969 504 ANVIDTIPEPLRDRME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYCRESGVRNLQKHI 581 (1230)
Q Consensus 504 aN~~~~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~~e~gvR~l~~~i 581 (1230)
||++.++|.|+++||. .+.+.-+..+++.+|++-.|-++.++ ..++...+ ..+++.....|++.|+.|..++.+..+
T Consensus 238 TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 238 TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 9999999999999997 57777778899999998888665553 44555444 466777788889999999999888777
Q ss_pred HH
Q psy8969 582 EK 583 (1230)
Q Consensus 582 ~~ 583 (1230)
..
T Consensus 317 ~~ 318 (386)
T KOG0737|consen 317 VS 318 (386)
T ss_pred Hh
Confidence 65
No 31
>KOG0726|consensus
Probab=99.87 E-value=7.7e-23 Score=219.45 Aligned_cols=223 Identities=26% Similarity=0.374 Sum_probs=171.6
Q ss_pred HHHHhhhhcccccChHHHHHHHHHHHHHhh-------hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc
Q psy8969 345 LTQAAKILDDDHYGMEDVKKRILEFIAVSQ-------LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM 417 (1230)
Q Consensus 345 ~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~-------~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~ 417 (1230)
+.+|...--.|++|++.-.+.|.|-+.... --|..+|++++|||+||||||.||+|+|+...+.|+|+..+.+
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 566666677899999999999999875432 2377889999999999999999999999999999999875444
Q ss_pred chhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC-C---C---ChhhHHHhhcChhhhhhhhhhcc
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY-S---G---DPASALLEMLDPEQNANFLDHYL 489 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~-~---~---~~~~all~~ld~~q~~~f~d~~~ 489 (1230)
.. +|.|..|..+++.|+.|....| |+||||||.+|..+ + | .....+||+|+. +|.|
T Consensus 256 iQ---------kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ------ldGF- 319 (440)
T KOG0726|consen 256 IQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ------LDGF- 319 (440)
T ss_pred HH---------HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh------ccCc-
Confidence 33 7999999999999999998877 88999999998543 1 2 124567777653 2221
Q ss_pred CccccCCceEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccC-HHHHHHHH
Q psy8969 490 DVPVDLSRVLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLE-PSAIQVLI 565 (1230)
Q Consensus 490 ~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~-~~~~~~li 565 (1230)
-+...|-+|++||+++++||||++ |.+. |+|+-+...-|..|+ .....++.....++.+.+..+ ++...+.|
T Consensus 320 ---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf-~IHTs~Mtl~~dVnle~li~~kddlSGAdI 395 (440)
T KOG0726|consen 320 ---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIF-QIHTSRMTLAEDVNLEELIMTKDDLSGADI 395 (440)
T ss_pred ---cccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeE-EEeecccchhccccHHHHhhcccccccccH
Confidence 224579999999999999999997 7775 555555555555544 445566666667777766655 55667889
Q ss_pred HHhhhhhhHHHHHHHHHHHHHH
Q psy8969 566 KNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 566 ~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
+..|.|||+-+|+.....+...
T Consensus 396 kAictEaGllAlRerRm~vt~~ 417 (440)
T KOG0726|consen 396 KAICTEAGLLALRERRMKVTME 417 (440)
T ss_pred HHHHHHHhHHHHHHHHhhccHH
Confidence 9999999999998877665543
No 32
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.4e-20 Score=229.17 Aligned_cols=253 Identities=25% Similarity=0.364 Sum_probs=193.0
Q ss_pred hhcCCCCCccc-ccccHHHHhhhhcccccChHHHHHHHHHHHHH--hhhcCCCCC-ceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 330 LTSLPWGIQSE-ENLDLTQAAKILDDDHYGMEDVKKRILEFIAV--SQLKGTTQG-KILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 330 ~~~lpw~~~~~-~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~--~~~~~~~~~-~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+.+|-++-++ +.-.+...++.|.+-++||+++.+.|...|-. ..+....+| ..+||.||.|||||.||++||..|
T Consensus 466 ~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 466 WTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred HHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 37788875543 55678899999999999999999999998843 334444444 578999999999999999999999
Q ss_pred C---CCeEEEecCCcch---hHHHhhccccccccCchhHHHHHHhhcCCCC--EEEEecccccCCCCCCChhhHHHhhcC
Q psy8969 406 N---REYFRFSVGGMSD---VAEIKGHRRTYVGAMPGKVIQCMKKTKTENP--LVLIDEVDKIGKGYSGDPASALLEMLD 477 (1230)
Q Consensus 406 ~---~~~~~~~~~~~~d---~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p--villDEIDk~~~~~~~~~~~all~~ld 477 (1230)
. ..++||+++...+ .+.+.|.-..|||-..|... -.+-..+| |||||||+|. ++|..+.||++||
T Consensus 546 fg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~L---TEaVRr~PySViLlDEIEKA----HpdV~nilLQVlD 618 (786)
T COG0542 546 FGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQL---TEAVRRKPYSVILLDEIEKA----HPDVFNLLLQVLD 618 (786)
T ss_pred cCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccch---hHhhhcCCCeEEEechhhhc----CHHHHHHHHHHhc
Confidence 8 8899999875543 45566777777776664432 22223344 9999999996 6789999999999
Q ss_pred hhhhhhhhhhccCccccCCceEEEEecCCCC----------------------------CCCHhhhcccc-eeecCCCCH
Q psy8969 478 PEQNANFLDHYLDVPVDLSRVLFICTANVID----------------------------TIPEPLRDRME-MIDVSGYVA 528 (1230)
Q Consensus 478 ~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~----------------------------~I~~~L~~R~~-~i~~~~~~~ 528 (1230)
... +..-.+..+|++|.++|+|+|.-. ...|++++|++ +|.|.+++.
T Consensus 619 dGr----LTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~ 694 (786)
T COG0542 619 DGR----LTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSK 694 (786)
T ss_pred CCe----eecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCH
Confidence 743 444567889999999999999321 24688889999 888888999
Q ss_pred HHHHHHHHHhhcc--hhHHhcCCCCCCcccCHHHHHHHHHH-hhhhhhHHHHHHHHHHHHH-HHHHHHhhcC
Q psy8969 529 EEKVAIAAQYLIP--QAMKESGLSPEQITLEPSAIQVLIKN-YCRESGVRNLQKHIEKVTR-KVALTIVKKE 596 (1230)
Q Consensus 529 ~e~~~i~~~~l~~--~~~~~~gl~~~~i~~~~~~~~~li~~-~~~e~gvR~l~~~i~~i~r-~~~~~~~~~~ 596 (1230)
++...|+...|-. +.+.++++ .+.+++++..+|++. |..+.|+|.|+|.|..-+. ..|..++.+.
T Consensus 695 ~~l~~Iv~~~L~~l~~~L~~~~i---~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~ 763 (786)
T COG0542 695 EVLERIVDLQLNRLAKRLAERGI---TLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGK 763 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc---eEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888776622 22333333 678999999999865 8889999999999988554 4666676543
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.7e-21 Score=219.69 Aligned_cols=215 Identities=21% Similarity=0.344 Sum_probs=161.9
Q ss_pred ccccChHHHH---HHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEec--CCcchhHHHhhccc
Q psy8969 354 DDHYGMEDVK---KRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV--GGMSDVAEIKGHRR 428 (1230)
Q Consensus 354 ~d~~G~~~vK---~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~--~~~~d~~~i~g~~~ 428 (1230)
+|++||+.+- +.|...+.. ..-..++|||||||||||||+.||..++.+|..+|. +|+.|..++....+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~ 97 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEA------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEAR 97 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhc------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHH
Confidence 5688888876 334444432 233568999999999999999999999999999994 46666555433332
Q ss_pred cccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEE--EecCC
Q psy8969 429 TYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFI--CTANV 506 (1230)
Q Consensus 429 ~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I--~TaN~ 506 (1230)
...+. ....|+|||||+++++ .|++.|+.+ ++...|++| +|.|+
T Consensus 98 ~~~~~-------------gr~tiLflDEIHRfnK----------------~QQD~lLp~-----vE~G~iilIGATTENP 143 (436)
T COG2256 98 KNRLL-------------GRRTILFLDEIHRFNK----------------AQQDALLPH-----VENGTIILIGATTENP 143 (436)
T ss_pred HHHhc-------------CCceEEEEehhhhcCh----------------hhhhhhhhh-----hcCCeEEEEeccCCCC
Confidence 22221 1357999999999865 466777776 445678888 67799
Q ss_pred CCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8969 507 IDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 507 ~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r 586 (1230)
...|.+||+||+.|+.+.+++.+|...++.+.+ ..++.||....+.++++++..+++. ..+.+|.+...+|.+.+
T Consensus 144 sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~---~~~~rgl~~~~~~i~~~a~~~l~~~--s~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 144 SFELNPALLSRARVFELKPLSSEDIKKLLKRAL---LDEERGLGGQIIVLDEEALDYLVRL--SNGDARRALNLLELAAL 218 (436)
T ss_pred CeeecHHHhhhhheeeeecCCHHHHHHHHHHHH---hhhhcCCCcccccCCHHHHHHHHHh--cCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999998866 4468899988999999999999866 56778888888877553
Q ss_pred HHHHHHhhcCCCceEechhhhhhhcCCCccccccc
Q psy8969 587 KVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRL 621 (1230)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 621 (1230)
. .+.. . .++.+.+++.++.....+++.
T Consensus 219 ~-----~~~~--~-~~~~~~l~~~l~~~~~~~Dk~ 245 (436)
T COG2256 219 S-----AEPD--E-VLILELLEEILQRRSARFDKD 245 (436)
T ss_pred h-----cCCC--c-ccCHHHHHHHHhhhhhccCCC
Confidence 2 2222 1 344888999998766655543
No 34
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.86 E-value=2.1e-20 Score=235.01 Aligned_cols=297 Identities=20% Similarity=0.348 Sum_probs=218.1
Q ss_pred HHHH-HhcCCCChhHHHHHHHHHHHhccCCCCCCcc----chhhhHHHHhhcCCCCCcc-cccccHHHHhhhhcccccCh
Q psy8969 286 FRER-IKDKKVPPPVMEVLNEELAKLGFLESHSSEF----NVTRNYLDWLTSLPWGIQS-EENLDLTQAAKILDDDHYGM 359 (1230)
Q Consensus 286 ~~~~-~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~----~v~~~yl~~~~~lpw~~~~-~~~~~~~~~~~~l~~d~~G~ 359 (1230)
|-+| |....+|+.+.+.+++=..+....+...... .-+..-+...+.+|-.... .+...+...++.|.+.++||
T Consensus 384 ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ 463 (758)
T PRK11034 384 LAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQ 463 (758)
T ss_pred HhhccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCc
Confidence 3444 6677899999998887665543322111111 1244555566899998654 45567888999999999999
Q ss_pred HHHHHHHHHHHHHhhh--cCCCCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcch---hHHHhhcccccccc
Q psy8969 360 EDVKKRILEFIAVSQL--KGTTQG-KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSD---VAEIKGHRRTYVGA 433 (1230)
Q Consensus 360 ~~vK~~i~e~l~~~~~--~~~~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d---~~~i~g~~~~~~g~ 433 (1230)
+++++.|.+.+..... ....+| ..+||+||||||||++|++||+.++.+|++++++...+ .+.+.|....|+|.
T Consensus 464 ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~ 543 (758)
T PRK11034 464 DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGF 543 (758)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccc
Confidence 9999999999864322 222233 36899999999999999999999999999999876543 45566666667775
Q ss_pred Cch-hHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-----
Q psy8969 434 MPG-KVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI----- 507 (1230)
Q Consensus 434 ~~g-~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~----- 507 (1230)
..+ .+..++.. ....|||||||||+. .+..+.||++||... +.|. .+..+|+++++||+|||.-
T Consensus 544 ~~~g~L~~~v~~--~p~sVlllDEieka~----~~v~~~LLq~ld~G~---ltd~-~g~~vd~rn~iiI~TsN~g~~~~~ 613 (758)
T PRK11034 544 DQGGLLTDAVIK--HPHAVLLLDEIEKAH----PDVFNLLLQVMDNGT---LTDN-NGRKADFRNVVLVMTTNAGVRETE 613 (758)
T ss_pred cccchHHHHHHh--CCCcEEEeccHhhhh----HHHHHHHHHHHhcCe---eecC-CCceecCCCcEEEEeCCcCHHHHh
Confidence 443 34344332 234699999999984 467899999998643 3332 3457899999999999932
Q ss_pred --------------------CCCCHhhhcccc-eeecCCCCHHHHHHHHHHhhc--chhHHhcCCCCCCcccCHHHHHHH
Q psy8969 508 --------------------DTIPEPLRDRME-MIDVSGYVAEEKVAIAAQYLI--PQAMKESGLSPEQITLEPSAIQVL 564 (1230)
Q Consensus 508 --------------------~~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~--~~~~~~~gl~~~~i~~~~~~~~~l 564 (1230)
..+.|+|++|++ +|.|.+++.++...|+..+|- .+.+++.|+ .+.++++++.+|
T Consensus 614 ~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i---~l~~~~~~~~~l 690 (758)
T PRK11034 614 RKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGV---SLEVSQEARDWL 690 (758)
T ss_pred hcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCC---CceECHHHHHHH
Confidence 236799999998 788999999999999987763 233445555 688999999999
Q ss_pred HH-HhhhhhhHHHHHHHHHHHHHH-HHHHHhhc
Q psy8969 565 IK-NYCRESGVRNLQKHIEKVTRK-VALTIVKK 595 (1230)
Q Consensus 565 i~-~~~~e~gvR~l~~~i~~i~r~-~~~~~~~~ 595 (1230)
++ .|..+.|+|.|+|.|++.+.. .+..++.+
T Consensus 691 ~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~ 723 (758)
T PRK11034 691 AEKGYDRAMGARPMARVIQDNLKKPLANELLFG 723 (758)
T ss_pred HHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 85 588999999999999997776 45555543
No 35
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.86 E-value=7.3e-21 Score=223.46 Aligned_cols=259 Identities=22% Similarity=0.319 Sum_probs=183.0
Q ss_pred cHHHHhhhhcccccChHHHHHHHHHHHHH--hhhcC---C-------CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE
Q psy8969 344 DLTQAAKILDDDHYGMEDVKKRILEFIAV--SQLKG---T-------TQGKILCFYGPPGVGKTSIAKSIARALNREYFR 411 (1230)
Q Consensus 344 ~~~~~~~~l~~d~~G~~~vK~~i~e~l~~--~~~~~---~-------~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~ 411 (1230)
.....+..||+.++||+++|+.+...+.. ..+.. . ..+..+||+||||||||++|++||+.++.||..
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 36788899999999999999988765521 11111 1 113579999999999999999999999999998
Q ss_pred EecCCcchhHHHhhccccccccCchhHHH-HHHhh-----cCCCCEEEEecccccCCCCC---------C-ChhhHHHhh
Q psy8969 412 FSVGGMSDVAEIKGHRRTYVGAMPGKVIQ-CMKKT-----KTENPLVLIDEVDKIGKGYS---------G-DPASALLEM 475 (1230)
Q Consensus 412 ~~~~~~~d~~~i~g~~~~~~g~~~g~i~~-~~~~~-----~~~~pvillDEIDk~~~~~~---------~-~~~~all~~ 475 (1230)
++..++.. ..|+|...+.++. ++..+ ...+.||||||||++.+... | +..++||++
T Consensus 147 ~da~~L~~--------~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~i 218 (413)
T TIGR00382 147 ADATTLTE--------AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKI 218 (413)
T ss_pred echhhccc--------cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHH
Confidence 88765432 2378875444333 23221 23456999999999975321 1 467899999
Q ss_pred cChhhh------hhhhhhccCccccCCceEEEEecCC----------------------C--------------------
Q psy8969 476 LDPEQN------ANFLDHYLDVPVDLSRVLFICTANV----------------------I-------------------- 507 (1230)
Q Consensus 476 ld~~q~------~~f~d~~~~~~~d~s~v~~I~TaN~----------------------~-------------------- 507 (1230)
||.... ....+.---+.++.+|++|||.... .
T Consensus 219 LeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~ 298 (413)
T TIGR00382 219 IEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVK 298 (413)
T ss_pred hhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHH
Confidence 974211 1111111123455566665542100 0
Q ss_pred CCCCHhhhccccee-ecCCCCHHHHHHHHHHh---hcchhHHhcCCCCCCcccCHHHHHHHHHH-hhhhhhHHHHHHHHH
Q psy8969 508 DTIPEPLRDRMEMI-DVSGYVAEEKVAIAAQY---LIPQAMKESGLSPEQITLEPSAIQVLIKN-YCRESGVRNLQKHIE 582 (1230)
Q Consensus 508 ~~I~~~L~~R~~~i-~~~~~~~~e~~~i~~~~---l~~~~~~~~gl~~~~i~~~~~~~~~li~~-~~~e~gvR~l~~~i~ 582 (1230)
..+.|+|+.|+++| .|.+++.++...|+... ++.+..+......-.+.++++++.+|++. |.++.|+|.|++.|+
T Consensus 299 ~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie 378 (413)
T TIGR00382 299 FGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVE 378 (413)
T ss_pred HhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 01568899999865 66789999999998763 66666566666666889999999999986 999999999999999
Q ss_pred HHHHHHHHHHhhcC-CCceEechhhhhhh
Q psy8969 583 KVTRKVALTIVKKE-SDKVTVTNDNLSDF 610 (1230)
Q Consensus 583 ~i~r~~~~~~~~~~-~~~~~i~~~~~~~~ 610 (1230)
.++...+.++.... ...++||.+.+.+.
T Consensus 379 ~~l~~~m~e~p~~~~~~~v~i~~~~v~~~ 407 (413)
T TIGR00382 379 GLLLDVMFDLPSLEDLEKVVITKETVLKQ 407 (413)
T ss_pred HhhHHHHhhCCCCCCCcEEEECHHHHcCc
Confidence 99999999998754 34588998888654
No 36
>KOG0728|consensus
Probab=99.85 E-value=3.7e-21 Score=202.66 Aligned_cols=223 Identities=26% Similarity=0.424 Sum_probs=169.2
Q ss_pred HHHHhhhhcc---cccChHHHHHHHHHHHHHhh-------hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEec
Q psy8969 345 LTQAAKILDD---DHYGMEDVKKRILEFIAVSQ-------LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414 (1230)
Q Consensus 345 ~~~~~~~l~~---d~~G~~~vK~~i~e~l~~~~-------~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~ 414 (1230)
+--.+++=|+ -++|+++-.+.|.|.+..+. ..|..+|+++|||||||+|||.||+++|......|+|+|.
T Consensus 135 LMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsg 214 (404)
T KOG0728|consen 135 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 214 (404)
T ss_pred HHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEech
Confidence 4444444443 47899999999999886532 3478899999999999999999999999999999999987
Q ss_pred CCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC-----CCCh--hhHHHhhcChhhhhhhhh
Q psy8969 415 GGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY-----SGDP--ASALLEMLDPEQNANFLD 486 (1230)
Q Consensus 415 ~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~-----~~~~--~~all~~ld~~q~~~f~d 486 (1230)
+.+.. +|+|+....+++.|-.|+...| |||.||||.||+.+ .||. ...+||+|+. +|
T Consensus 215 selvq---------k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq------ld 279 (404)
T KOG0728|consen 215 SELVQ---------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ------LD 279 (404)
T ss_pred HHHHH---------HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh------cc
Confidence 55444 7999999999999999998877 88899999998643 2232 3456666642 22
Q ss_pred hccCccccCCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCccc-CHHHHH
Q psy8969 487 HYLDVPVDLSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITL-EPSAIQ 562 (1230)
Q Consensus 487 ~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~-~~~~~~ 562 (1230)
.| --..|+-+|++||++|-+|+||++ |.+ -|+|+++..+-...|++-+ -.++..-.|++...|.- -+++..
T Consensus 280 gf----eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkih-srkmnl~rgi~l~kiaekm~gasg 354 (404)
T KOG0728|consen 280 GF----EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIH-SRKMNLTRGINLRKIAEKMPGASG 354 (404)
T ss_pred cc----ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHh-hhhhchhcccCHHHHHHhCCCCcc
Confidence 21 123689999999999999999997 776 4888888888777777544 34555566776655522 245556
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 563 VLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 563 ~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
+-++..|.|||+.+|+..--.+...
T Consensus 355 aevk~vcteagm~alrerrvhvtqe 379 (404)
T KOG0728|consen 355 AEVKGVCTEAGMYALRERRVHVTQE 379 (404)
T ss_pred chhhhhhhhhhHHHHHHhhccccHH
Confidence 6789999999999998766555443
No 37
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.85 E-value=1.5e-21 Score=230.16 Aligned_cols=210 Identities=25% Similarity=0.381 Sum_probs=147.9
Q ss_pred HHHhhhhcccccChHHHHHHHHHHHHHhhh-------cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcc
Q psy8969 346 TQAAKILDDDHYGMEDVKKRILEFIAVSQL-------KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS 418 (1230)
Q Consensus 346 ~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~-------~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~ 418 (1230)
.....+-.+|++|++++|+.|.+.+..... .|...|+++||+||||||||++|++||..++.+|++++.+.+.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 334456678999999999999998864322 3567789999999999999999999999999999998753322
Q ss_pred hhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCC-----C--hhhHHHhhcChhhhhhhhhhccC
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSG-----D--PASALLEMLDPEQNANFLDHYLD 490 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~-----~--~~~all~~ld~~q~~~f~d~~~~ 490 (1230)
..|+|..+..+.+.|..+....| ||||||||.++..+.+ + ....+.++|.. +|.
T Consensus 217 ---------~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~------ld~--- 278 (398)
T PTZ00454 217 ---------QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ------MDG--- 278 (398)
T ss_pred ---------HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH------hhc---
Confidence 26889989999999999887766 7889999998754311 1 11223333221 111
Q ss_pred ccccCCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCC----Cc-ccCHHHHH
Q psy8969 491 VPVDLSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPE----QI-TLEPSAIQ 562 (1230)
Q Consensus 491 ~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~----~i-~~~~~~~~ 562 (1230)
. -...+|+||+|||+++.||++|++ ||+ .|.++.|+.++...|++.++- ..++..+ .+ ..+++...
T Consensus 279 ~-~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~-----~~~l~~dvd~~~la~~t~g~sg 352 (398)
T PTZ00454 279 F-DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS-----KMNLSEEVDLEDFVSRPEKISA 352 (398)
T ss_pred c-CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh-----cCCCCcccCHHHHHHHcCCCCH
Confidence 1 123579999999999999999997 897 478888888888888876552 2333321 11 22233334
Q ss_pred HHHHHhhhhhhHHHHHH
Q psy8969 563 VLIKNYCRESGVRNLQK 579 (1230)
Q Consensus 563 ~li~~~~~e~gvR~l~~ 579 (1230)
+.|+..|++|+++.+++
T Consensus 353 aDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 353 ADIAAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 55566666666666554
No 38
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.85 E-value=3.4e-21 Score=231.60 Aligned_cols=167 Identities=25% Similarity=0.342 Sum_probs=128.3
Q ss_pred ccccChHHHHHHHHHHHHH----hhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccc
Q psy8969 354 DDHYGMEDVKKRILEFIAV----SQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRT 429 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~----~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~ 429 (1230)
+|++|++.+|+.+.+.... ....|...+++|||+||||||||++|++||..++.||++++.+.+.+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~---------~ 298 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG---------G 298 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc---------c
Confidence 5899999999988764321 22346678899999999999999999999999999999999765444 6
Q ss_pred ccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC--CCCh--hhHHHhhcChhhhhhhhhhccCccccCCceEEEEec
Q psy8969 430 YVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY--SGDP--ASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTA 504 (1230)
Q Consensus 430 ~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~--~~~~--~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~Ta 504 (1230)
|+|+.+..+.+.|..+...+| ||||||||++.... .++. ...++. .|+..+.+ ..++|++|+||
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~--------~lL~~l~~---~~~~V~vIaTT 367 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLA--------TFITWLSE---KKSPVFVVATA 367 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHH--------HHHHHHhc---CCCceEEEEec
Confidence 899999999999999887766 77799999986532 2232 111111 11111111 13579999999
Q ss_pred CCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhc
Q psy8969 505 NVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLI 540 (1230)
Q Consensus 505 N~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~ 540 (1230)
|.++.||++|++ ||+ +|.++-|+.++...|++.++-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 999999999987 997 577888889999999988774
No 39
>KOG0734|consensus
Probab=99.85 E-value=4.9e-21 Score=219.45 Aligned_cols=187 Identities=21% Similarity=0.339 Sum_probs=145.8
Q ss_pred ccccHHHHhhhhcccccChHHHHHHHHHHHHH------hhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEec
Q psy8969 341 ENLDLTQAAKILDDDHYGMEDVKKRILEFIAV------SQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414 (1230)
Q Consensus 341 ~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~------~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~ 414 (1230)
+..|-....++-=+|+-|.+++|..+.|.+.. ....|-.-|+++||+||||||||.||||||.+.|.|||..+.
T Consensus 291 ~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG 370 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG 370 (752)
T ss_pred cccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc
Confidence 55677777778778999999999776654432 122355678999999999999999999999999999998876
Q ss_pred CCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChhh-------HHHhhcChhhhhhhhh
Q psy8969 415 GGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPAS-------ALLEMLDPEQNANFLD 486 (1230)
Q Consensus 415 ~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~~-------all~~ld~~q~~~f~d 486 (1230)
+...+ .|||-...+|+..|+.|+...| ||||||||.+|..+...... .||--||.
T Consensus 371 SEFdE---------m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDG-------- 433 (752)
T KOG0734|consen 371 SEFDE---------MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDG-------- 433 (752)
T ss_pred cchhh---------hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcC--------
Confidence 54433 5999999999999999999877 88899999999877655442 22222222
Q ss_pred hccCccccCCceEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCC
Q psy8969 487 HYLDVPVDLSRVLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLS 550 (1230)
Q Consensus 487 ~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~ 550 (1230)
.-....|+||++||.++.+|+||.+ ||++ |.++.+...-..+|+..|+- ++....+++
T Consensus 434 -----F~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~-ki~~~~~VD 494 (752)
T KOG0734|consen 434 -----FKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS-KIPLDEDVD 494 (752)
T ss_pred -----cCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh-cCCcccCCC
Confidence 1223689999999999999999998 9995 78888888999999999983 343343443
No 40
>KOG0739|consensus
Probab=99.85 E-value=1e-20 Score=203.97 Aligned_cols=160 Identities=25% Similarity=0.420 Sum_probs=133.5
Q ss_pred hhcccccChHHHHHHHHHHHHHhh----h-cCC-CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHh
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQ----L-KGT-TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIK 424 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~----~-~~~-~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~ 424 (1230)
+=++|+.||+.+|+.+.|.+.... + .|. .+.++|||||||||||+.||+++|.+.+-.||.+|.+++.+
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS----- 204 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS----- 204 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH-----
Confidence 344899999999999999875432 2 233 34588999999999999999999999999999999877766
Q ss_pred hccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 425 GHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 425 g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
+|.|+++..+.+.|..|+.+.| ||||||||.++..+.++...+-..+ ...|+-.+.++..|.+.|+++.+
T Consensus 205 ----KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRI-----KTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 205 ----KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRI-----KTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred ----HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHH-----HHHHHHhhhccccCCCceEEEec
Confidence 7999999999999999998877 8999999999877766665554433 34577777889999999999999
Q ss_pred cCCCCCCCHhhhcccce-eecC
Q psy8969 504 ANVIDTIPEPLRDRMEM-IDVS 524 (1230)
Q Consensus 504 aN~~~~I~~~L~~R~~~-i~~~ 524 (1230)
||.+..+|.|+|+||+- |.++
T Consensus 276 TNiPw~LDsAIRRRFekRIYIP 297 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIP 297 (439)
T ss_pred CCCchhHHHHHHHHhhcceecc
Confidence 99999999999999995 4443
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=99.85 E-value=1.3e-20 Score=213.81 Aligned_cols=223 Identities=24% Similarity=0.365 Sum_probs=159.4
Q ss_pred cccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhh------cC---CCCCceEEEeCCCCCCchHHHHHHHHHhC--
Q psy8969 338 QSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQL------KG---TTQGKILCFYGPPGVGKTSIAKSIARALN-- 406 (1230)
Q Consensus 338 ~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~------~~---~~~~~~llL~GPPG~GKTslak~iA~~l~-- 406 (1230)
.+-+..|+..+.+.||++++||++||++|.+++++... .| ..+|..++|+||||||||++|+++|+.+.
T Consensus 7 ~~~~~~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 7 EEYEKTQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred hhccccCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 44567899999999999999999999999888754221 12 22455699999999999999999999863
Q ss_pred -----CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCC-----CCChhhHHHhhc
Q psy8969 407 -----REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGY-----SGDPASALLEML 476 (1230)
Q Consensus 407 -----~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~-----~~~~~~all~~l 476 (1230)
.+|+.++... +.+ .|+|..+..+...+..+ .+.||||||+|.+.+.. ..+..+.|+..+
T Consensus 87 g~~~~~~~~~v~~~~------l~~---~~~g~~~~~~~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~m 155 (287)
T CHL00181 87 GYIKKGHLLTVTRDD------LVG---QYIGHTAPKTKEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVM 155 (287)
T ss_pred CCCCCCceEEecHHH------HHH---HHhccchHHHHHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHH
Confidence 2566665322 211 47787777776677665 35799999999985422 122234455555
Q ss_pred ChhhhhhhhhhccCccccCCceEEEEecCCC-----CCCCHhhhcccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCC
Q psy8969 477 DPEQNANFLDHYLDVPVDLSRVLFICTANVI-----DTIPEPLRDRME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLS 550 (1230)
Q Consensus 477 d~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-----~~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~ 550 (1230)
+. ...++++|++++.. ..++|+|++||. +|.|++|+.+|...|+..++-. .
T Consensus 156 e~---------------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~-----~--- 212 (287)
T CHL00181 156 EN---------------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE-----Q--- 212 (287)
T ss_pred hc---------------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH-----h---
Confidence 42 12467788776532 245799999998 6899999999999999887632 1
Q ss_pred CCCcccCHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy8969 551 PEQITLEPSAIQVLIKNYCR------ESGVRNLQKHIEKVTRKVALTIVKKE 596 (1230)
Q Consensus 551 ~~~i~~~~~~~~~li~~~~~------e~gvR~l~~~i~~i~r~~~~~~~~~~ 596 (1230)
...++++++..+...+.+ .+++|.+++.++++....+..++...
T Consensus 213 --~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~ 262 (287)
T CHL00181 213 --QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESG 262 (287)
T ss_pred --cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344566666655544332 24499999999999999988888654
No 42
>KOG0731|consensus
Probab=99.85 E-value=2.3e-21 Score=236.06 Aligned_cols=217 Identities=23% Similarity=0.389 Sum_probs=159.8
Q ss_pred hcccccChHHHHHHHHHHHHHh------hhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhh
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVS------QLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKG 425 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~------~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g 425 (1230)
.=+|+.|++++|+.|.|++... ...|..-|+++||+||||||||.||||+|.+.|.||+.++.+...+
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE------ 382 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE------ 382 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH------
Confidence 3369999999999999998643 3347778899999999999999999999999999999998766555
Q ss_pred ccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCC------C--hhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 426 HRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSG------D--PASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 426 ~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~------~--~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
.++|..+.+|+..|..++.+.| ||||||||.+++.+.| + ..+.|.++|-. +|. ... .+
T Consensus 383 ---~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~e------mDg---f~~-~~ 449 (774)
T KOG0731|consen 383 ---MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVE------MDG---FET-SK 449 (774)
T ss_pred ---HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHH------hcC---CcC-CC
Confidence 4778779999999999999988 6779999999865522 1 11233333211 111 112 36
Q ss_pred ceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhhhhh
Q psy8969 497 RVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYCRES 572 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~~e~ 572 (1230)
.|+||++||+++.+|+||++ ||+ .|.+..++..+...|.+-|+-+.-+.....+..++ ..+++...+.|.+.|.|+
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEA 529 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHH
Confidence 89999999999999999998 998 57888888899999998887554442111111112 345556667777888888
Q ss_pred hHHHHHHHHHHHHHH
Q psy8969 573 GVRNLQKHIEKVTRK 587 (1230)
Q Consensus 573 gvR~l~~~i~~i~r~ 587 (1230)
.+...++....|..+
T Consensus 530 a~~a~r~~~~~i~~~ 544 (774)
T KOG0731|consen 530 ALLAARKGLREIGTK 544 (774)
T ss_pred HHHHHHhccCccchh
Confidence 777766544444433
No 43
>KOG0652|consensus
Probab=99.85 E-value=1.5e-21 Score=206.54 Aligned_cols=212 Identities=25% Similarity=0.394 Sum_probs=160.5
Q ss_pred ccccChHHHHHHHHHHHHHhh-------hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQ-------LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGH 426 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~-------~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~ 426 (1230)
+|++|+++-.+.+.|.+-... ..|..+|+++|+|||||||||.+||+.|...+..|..+....+..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ------- 243 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ------- 243 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh-------
Confidence 689999999999988874432 236788999999999999999999999999999998877544443
Q ss_pred cccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC-----CCCh--hhHHHhhcChhhhhhhhhhccCccccCCce
Q psy8969 427 RRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY-----SGDP--ASALLEMLDPEQNANFLDHYLDVPVDLSRV 498 (1230)
Q Consensus 427 ~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~-----~~~~--~~all~~ld~~q~~~f~d~~~~~~~d~s~v 498 (1230)
.|+|.....++.+|..++...| ||||||+|.||..+ .||- ...+||+|+. +|.| -...+|
T Consensus 244 --MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ------LDGF----ss~~~v 311 (424)
T KOG0652|consen 244 --MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ------LDGF----SSDDRV 311 (424)
T ss_pred --hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh------hcCC----CCccce
Confidence 6999999999999999999887 88899999998542 2332 3567777642 2221 233689
Q ss_pred EEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCccc-CHHHHHHHHHHhhhhhhH
Q psy8969 499 LFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITL-EPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 499 ~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~-~~~~~~~li~~~~~e~gv 574 (1230)
-+|++||+.+-++|||++ |++. |+|+-++.+-...|+ +....++-...+++.+++.- +++.-.+-.+..|-|+|+
T Consensus 312 KviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIl-QIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGM 390 (424)
T KOG0652|consen 312 KVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIL-QIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGM 390 (424)
T ss_pred EEEeecccccccCHHHhhcccccccccCCCCChHHHHHHH-HHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhH
Confidence 999999999999999997 7874 777777666665554 44445555455555555543 356667778899999999
Q ss_pred HHHHHHHHHHH
Q psy8969 575 RNLQKHIEKVT 585 (1230)
Q Consensus 575 R~l~~~i~~i~ 585 (1230)
-.|+|--..|.
T Consensus 391 iALRr~atev~ 401 (424)
T KOG0652|consen 391 IALRRGATEVT 401 (424)
T ss_pred HHHhccccccc
Confidence 99988544433
No 44
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.85 E-value=5.3e-21 Score=226.78 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=152.5
Q ss_pred hhhhcccccChHHHHHHHHHHHHHhhh-------cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhH
Q psy8969 349 AKILDDDHYGMEDVKKRILEFIAVSQL-------KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVA 421 (1230)
Q Consensus 349 ~~~l~~d~~G~~~vK~~i~e~l~~~~~-------~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~ 421 (1230)
...-.+|++|+++.++.|.+++..... .+...+.++||+||||||||++|++||..++.+|++++.+.+.+
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~-- 255 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ-- 255 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh--
Confidence 334557899999999999998865332 25667889999999999999999999999999999987654433
Q ss_pred HHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCC-----CCh--hhHHHhhcChhhhhhhhhhccCccc
Q psy8969 422 EIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYS-----GDP--ASALLEMLDPEQNANFLDHYLDVPV 493 (1230)
Q Consensus 422 ~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~-----~~~--~~all~~ld~~q~~~f~d~~~~~~~ 493 (1230)
.|+|+.+..+...|..+....| ||||||||.++..+. ++. ...++++|.. +|.+ .
T Consensus 256 -------k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~------Ldg~----~ 318 (438)
T PTZ00361 256 -------KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ------LDGF----D 318 (438)
T ss_pred -------hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH------Hhhh----c
Confidence 5889888889999988877666 788999999975432 111 2234433321 1111 1
Q ss_pred cCCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhh
Q psy8969 494 DLSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYC 569 (1230)
Q Consensus 494 d~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~ 569 (1230)
...++.||+|||+++.||++|++ ||+ .|.++.|+.+++..|+..++-...+ ..+++.+.+ ..+++...+.|+.+|
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-~~dvdl~~la~~t~g~sgAdI~~i~ 397 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-AEDVDLEEFIMAKDELSGADIKAIC 397 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-CcCcCHHHHHHhcCCCCHHHHHHHH
Confidence 23579999999999999999986 887 5899999999999999876532211 122222222 233444556667777
Q ss_pred hhhhHHHHHHHH
Q psy8969 570 RESGVRNLQKHI 581 (1230)
Q Consensus 570 ~e~gvR~l~~~i 581 (1230)
++||++++++.-
T Consensus 398 ~eA~~~Alr~~r 409 (438)
T PTZ00361 398 TEAGLLALRERR 409 (438)
T ss_pred HHHHHHHHHhcC
Confidence 788777776643
No 45
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.84 E-value=1.1e-20 Score=240.97 Aligned_cols=211 Identities=23% Similarity=0.336 Sum_probs=154.5
Q ss_pred hhhcccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHH
Q psy8969 350 KILDDDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAE 422 (1230)
Q Consensus 350 ~~l~~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~ 422 (1230)
.+-++|++|++++|+.|.+.+.+.... +...+.++|||||||||||++|++||.+++.+|+.++...+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~--- 525 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS--- 525 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh---
Confidence 456789999999999999988653322 5567788999999999999999999999999999988654433
Q ss_pred HhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChh--------hHHHhhcChhhhhhhhhhccCccc
Q psy8969 423 IKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPA--------SALLEMLDPEQNANFLDHYLDVPV 493 (1230)
Q Consensus 423 i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~--------~all~~ld~~q~~~f~d~~~~~~~ 493 (1230)
.|+|..+..+.+.|..+....| ||||||||.+...+.++.. +.||..||. -.
T Consensus 526 ------~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg-------------~~ 586 (733)
T TIGR01243 526 ------KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG-------------IQ 586 (733)
T ss_pred ------cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc-------------cc
Confidence 6999999999999999988766 8889999999765433221 223333332 12
Q ss_pred cCCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhh
Q psy8969 494 DLSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYC 569 (1230)
Q Consensus 494 d~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~ 569 (1230)
+.++|++|+|||+++.||+++++ ||+ +|.++.++.++...|++.++-. .-...+++.+.+ ..+++...+.|+..|
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~l~~la~~t~g~sgadi~~~~ 665 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVDLEELAEMTEGYTGADIEAVC 665 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCCHHHHHHHcCCCCHHHHHHHH
Confidence 35689999999999999999997 998 5788888889999998765421 111111111122 233344455667777
Q ss_pred hhhhHHHHHHHHHH
Q psy8969 570 RESGVRNLQKHIEK 583 (1230)
Q Consensus 570 ~e~gvR~l~~~i~~ 583 (1230)
+++++..+++.+..
T Consensus 666 ~~A~~~a~~~~~~~ 679 (733)
T TIGR01243 666 REAAMAALRESIGS 679 (733)
T ss_pred HHHHHHHHHHHhhh
Confidence 88888777776554
No 46
>KOG1074|consensus
Probab=99.84 E-value=3.5e-21 Score=229.05 Aligned_cols=86 Identities=34% Similarity=0.763 Sum_probs=78.3
Q ss_pred CCCCccCCCCCCCCCCchhhhccccccCCCCcccCCcccccccccCchhhhhhcccccCCCC----Eeeccc---ccCcc
Q psy8969 1133 SSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP----YRCAHE---FCSKS 1205 (1230)
Q Consensus 1133 ~~kpy~C~~CgK~F~s~s~Lk~H~R~HTGEKPykCpve~CgKsF~~ks~Lk~H~RtHTGEKP----y~C~~e---~CGKs 1205 (1230)
...|.+|=+|.|+...+++|+.|+|+|||||||+|. +||++|+++++|+.||.+|-..-| |.| + +|.+-
T Consensus 602 ~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCK--iCgRAFtTkGNLkaH~~vHka~p~~R~q~Sc--P~~~ic~~k 677 (958)
T KOG1074|consen 602 RTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCK--ICGRAFTTKGNLKAHMSVHKAKPPARVQFSC--PSTFICQKK 677 (958)
T ss_pred cCCccceeeeeecccchhhhhhhhhcccCcCccccc--cccchhccccchhhcccccccCccccccccC--Cchhhhccc
Confidence 456889999999999999999999999999999994 699999999999999999976544 678 5 79999
Q ss_pred ccchhhHHHHhhhccCc
Q psy8969 1206 FKTSGDLQKHVRTHTDE 1222 (1230)
Q Consensus 1206 F~~ks~LkrH~R~HtGE 1222 (1230)
|+..-.|..|+|+|.|.
T Consensus 678 ftn~V~lpQhIriH~~~ 694 (958)
T KOG1074|consen 678 FTNAVTLPQHIRIHLGG 694 (958)
T ss_pred ccccccccceEEeecCC
Confidence 99999999999999853
No 47
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.84 E-value=5.1e-20 Score=212.98 Aligned_cols=266 Identities=21% Similarity=0.318 Sum_probs=188.3
Q ss_pred cccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcC--------CCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 342 NLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKG--------TTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 342 ~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~--------~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
+++.......||+.++||+++|+.+...+...+.+. ...+..|||+||||||||++|++||+.++.||++++
T Consensus 3 ~~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CCCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 466788889999999999999999988886533221 123578999999999999999999999999999998
Q ss_pred cCCcc-------hh-HHHhhcc----------------------------------------------------------
Q psy8969 414 VGGMS-------DV-AEIKGHR---------------------------------------------------------- 427 (1230)
Q Consensus 414 ~~~~~-------d~-~~i~g~~---------------------------------------------------------- 427 (1230)
..... |. ..++...
T Consensus 83 ~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~ 162 (443)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKK 162 (443)
T ss_pred chhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHH
Confidence 53111 10 0000000
Q ss_pred ----------------c-cc-c--ccCch------hHHHHHH--------------------------------------
Q psy8969 428 ----------------R-TY-V--GAMPG------KVIQCMK-------------------------------------- 443 (1230)
Q Consensus 428 ----------------~-~~-~--g~~~g------~i~~~~~-------------------------------------- 443 (1230)
. .. + +..+| .+...|.
T Consensus 163 l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ 242 (443)
T PRK05201 163 LREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQE 242 (443)
T ss_pred HHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHH
Confidence 0 00 0 00111 0111111
Q ss_pred -hhc-CCCCEEEEecccccCCCC---CCC-----hhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecC----CCCC
Q psy8969 444 -KTK-TENPLVLIDEVDKIGKGY---SGD-----PASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN----VIDT 509 (1230)
Q Consensus 444 -~~~-~~~pvillDEIDk~~~~~---~~~-----~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN----~~~~ 509 (1230)
... .++.||||||||||+... ..| ...+||.+++...-.. .| .++|.++|+|||..- .++.
T Consensus 243 ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~---k~--~~i~T~~ILFI~~GAF~~~kp~D 317 (443)
T PRK05201 243 AIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST---KY--GMVKTDHILFIASGAFHVSKPSD 317 (443)
T ss_pred HHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee---cc--eeEECCceeEEecCCcCCCChhh
Confidence 111 257899999999998432 123 3468999988754321 23 579999999997543 3556
Q ss_pred CCHhhhcccce-eecCCCCHHHHHHHHH---HhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh------hhhhHHHHHH
Q psy8969 510 IPEPLRDRMEM-IDVSGYVAEEKVAIAA---QYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC------RESGVRNLQK 579 (1230)
Q Consensus 510 I~~~L~~R~~~-i~~~~~~~~e~~~i~~---~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~------~e~gvR~l~~ 579 (1230)
+.|.|.-||.+ +.+.+++.++...|+. ..|+.+...-.....-.+.++++++..|++.-. +.-|+|.|+.
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrt 397 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHT 397 (443)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHH
Confidence 78999999996 5999999999999983 446555554455566688999999999986643 5999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 580 HIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 580 ~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
.+++++..+...........++||.+.+.+-++
T Consensus 398 I~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 398 VMEKLLEDISFEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred HHHHHHHHHhccCCCCCCCEEEECHHHHHHHHH
Confidence 999999999888776655678999888876665
No 48
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.83 E-value=9.1e-20 Score=206.16 Aligned_cols=193 Identities=18% Similarity=0.257 Sum_probs=136.1
Q ss_pred ccccChHHHHHHHHHHHHHhh--hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQ--LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYV 431 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~--~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~ 431 (1230)
.+.|=....-+++.-.++..- +.+...|.+|+||||||||||.+|++||+++|.+|+.++.+.+.+ .|+
T Consensus 119 g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s---------k~v 189 (413)
T PLN00020 119 GGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES---------ENA 189 (413)
T ss_pred CccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc---------CcC
Confidence 334444444444444443322 246678899999999999999999999999999999999877766 799
Q ss_pred ccCchhHHHHHHhhcC------CCCEEEEecccccCCCCCCCh--------hhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 432 GAMPGKVIQCMKKTKT------ENPLVLIDEVDKIGKGYSGDP--------ASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 432 g~~~g~i~~~~~~~~~------~~pvillDEIDk~~~~~~~~~--------~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
|+.+..|++.|..|.. ...||||||||.+...+.++. .+.||.++|.-.+.. ++......-+..+
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~-l~G~w~~~~~~~~ 268 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVS-LGGDWREKEEIPR 268 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccc-ccccccccccCCC
Confidence 9999999999998864 345899999999986553221 134566666311110 0100001123568
Q ss_pred eEEEEecCCCCCCCHhhhc--ccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh
Q psy8969 498 VLFICTANVIDTIPEPLRD--RMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC 569 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~--R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~ 569 (1230)
|++|+|||+++.||+||++ ||+.+ +.-++.++...|++.++- ..+ ++...+..|++.+-
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r-----~~~-------l~~~dv~~Lv~~f~ 329 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFR-----DDG-------VSREDVVKLVDTFP 329 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhc-----cCC-------CCHHHHHHHHHcCC
Confidence 9999999999999999999 99975 356889999999876552 222 34466677776663
No 49
>KOG0651|consensus
Probab=99.83 E-value=5.2e-21 Score=208.11 Aligned_cols=219 Identities=23% Similarity=0.367 Sum_probs=153.2
Q ss_pred ccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGH 426 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~ 426 (1230)
+.+.|+-.....+++.+++...+ |...|.+++||||||+|||.+|++||..+|.+|+.++.+.+.|
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~------- 204 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD------- 204 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh-------
Confidence 56888888888888888765443 6778899999999999999999999999999999999988888
Q ss_pred cccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCC-----C--ChhhHHHhhcChhhhhhhhhhccCccccCCce
Q psy8969 427 RRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYS-----G--DPASALLEMLDPEQNANFLDHYLDVPVDLSRV 498 (1230)
Q Consensus 427 ~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~-----~--~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v 498 (1230)
+|+|+....|++.|+.|....| |||+||||.++..+. . .....|.++||. +|. .-.+.+|
T Consensus 205 --kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnq------mdg----fd~l~rV 272 (388)
T KOG0651|consen 205 --KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQ------MDG----FDTLHRV 272 (388)
T ss_pred --hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHh------hcc----chhcccc
Confidence 7999999999999999988766 788999999974331 1 123567777773 222 1246789
Q ss_pred EEEEecCCCCCCCHhhhc--ccceeecCCCCHHHH-HHHHHHhhcchhHHhcC-CCCCC-cccCHHHHHHHHHHhhhhhh
Q psy8969 499 LFICTANVIDTIPEPLRD--RMEMIDVSGYVAEEK-VAIAAQYLIPQAMKESG-LSPEQ-ITLEPSAIQVLIKNYCRESG 573 (1230)
Q Consensus 499 ~~I~TaN~~~~I~~~L~~--R~~~i~~~~~~~~e~-~~i~~~~l~~~~~~~~g-l~~~~-i~~~~~~~~~li~~~~~e~g 573 (1230)
-+|+|+|++++++|||++ ||+.+.-.+.+.+.. ..|.+-+ .+.+..+| ++.+. +.+.+++-.+.+++.|+|+|
T Consensus 273 k~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih--~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag 350 (388)
T KOG0651|consen 273 KTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIH--VQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAG 350 (388)
T ss_pred cEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeec--cccccccccccHHHHHHHHhccChHHHhhhccccc
Confidence 999999999999999997 887543333333332 2222111 11111222 11111 12333333344678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy8969 574 VRNLQKHIEKVTRKVALTIV 593 (1230)
Q Consensus 574 vR~l~~~i~~i~r~~~~~~~ 593 (1230)
+..++..-..++.....+.+
T Consensus 351 ~Fa~~~~~~~vl~Ed~~k~v 370 (388)
T KOG0651|consen 351 MFAIPEERDEVLHEDFMKLV 370 (388)
T ss_pred ccccchhhHHHhHHHHHHHH
Confidence 99888776666554444433
No 50
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.83 E-value=4.7e-18 Score=219.34 Aligned_cols=260 Identities=24% Similarity=0.367 Sum_probs=191.7
Q ss_pred hhHHHHhhcCCCCCccc-ccccHHHHhhhhcccccChHHHHHHHHHHHHHhh--hcCCCC-CceEEEeCCCCCCchHHHH
Q psy8969 324 RNYLDWLTSLPWGIQSE-ENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQ--LKGTTQ-GKILCFYGPPGVGKTSIAK 399 (1230)
Q Consensus 324 ~~yl~~~~~lpw~~~~~-~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~--~~~~~~-~~~llL~GPPG~GKTslak 399 (1230)
..-+...+.+|-..-.. +.-.+...++.|.+.++|++.+.+.|.+.+.... +....+ ...+||+||||||||++|+
T Consensus 534 ~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~ 613 (852)
T TIGR03346 534 AEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAK 613 (852)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 34444457899986544 4456888889999999999999999999886432 222223 3568999999999999999
Q ss_pred HHHHHh---CCCeEEEecCCcch---hHHHhhccccccccCc-hhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHH
Q psy8969 400 SIARAL---NREYFRFSVGGMSD---VAEIKGHRRTYVGAMP-GKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASAL 472 (1230)
Q Consensus 400 ~iA~~l---~~~~~~~~~~~~~d---~~~i~g~~~~~~g~~~-g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~al 472 (1230)
+||+.+ +.+|++++++...+ .+.+.|....|+|-.. |.+..+++. ....||||||||++ +.+..+.|
T Consensus 614 ~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~--~p~~vlllDeieka----~~~v~~~L 687 (852)
T TIGR03346 614 ALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRR--KPYSVVLFDEVEKA----HPDVFNVL 687 (852)
T ss_pred HHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHc--CCCcEEEEeccccC----CHHHHHHH
Confidence 999998 46899999876543 2334455555666543 334444332 23459999999997 45678999
Q ss_pred HhhcChhhhhhhhhhccCccccCCceEEEEecCCCC-------------------------CCCHhhhcccc-eeecCCC
Q psy8969 473 LEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID-------------------------TIPEPLRDRME-MIDVSGY 526 (1230)
Q Consensus 473 l~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~-------------------------~I~~~L~~R~~-~i~~~~~ 526 (1230)
|++||..+ +.|. .+..+|+++++||+|||.-. ...|.|+.|++ +|.+.++
T Consensus 688 l~~l~~g~---l~d~-~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL 763 (852)
T TIGR03346 688 LQVLDDGR---LTDG-QGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPL 763 (852)
T ss_pred HHHHhcCc---eecC-CCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCc
Confidence 99998643 3343 46778999999999999722 24578999996 6788899
Q ss_pred CHHHHHHHHHHhhc--chhHHhcCCCCCCcccCHHHHHHHHHH-hhhhhhHHHHHHHHHHHHH-HHHHHHhhcC
Q psy8969 527 VAEEKVAIAAQYLI--PQAMKESGLSPEQITLEPSAIQVLIKN-YCRESGVRNLQKHIEKVTR-KVALTIVKKE 596 (1230)
Q Consensus 527 ~~~e~~~i~~~~l~--~~~~~~~gl~~~~i~~~~~~~~~li~~-~~~e~gvR~l~~~i~~i~r-~~~~~~~~~~ 596 (1230)
+.++...|+...+- .+.+.+.|+ .+.++++++..|++. |....|+|.|++.|+..+. ..+..++.+.
T Consensus 764 ~~e~l~~I~~l~L~~l~~~l~~~~~---~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~~~ 834 (852)
T TIGR03346 764 GREQIARIVEIQLGRLRKRLAERKI---TLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILAGE 834 (852)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCC---eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999887763 233445555 378999999999987 7789999999999999774 4666666543
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.3e-20 Score=228.62 Aligned_cols=169 Identities=27% Similarity=0.392 Sum_probs=138.5
Q ss_pred hhhcccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHH
Q psy8969 350 KILDDDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAE 422 (1230)
Q Consensus 350 ~~l~~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~ 422 (1230)
.+-..|++|++++|+.+.+.+.+.... +...++++|||||||||||+||+++|..++.+|+.+..+++.+
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s--- 314 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS--- 314 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc---
Confidence 344589999999999999888664332 3466779999999999999999999999999999998776555
Q ss_pred HhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChh-------hHHHhhcChhhhhhhhhhccCcccc
Q psy8969 423 IKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPA-------SALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 423 i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~-------~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
+|+|+....|.+.|..|....| ||||||||++...+..+.. +.||..+|. --+
T Consensus 315 ------k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~-------------~e~ 375 (494)
T COG0464 315 ------KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDG-------------IEK 375 (494)
T ss_pred ------cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcC-------------CCc
Confidence 7999999999999999996655 8999999999876654332 233333332 234
Q ss_pred CCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhc
Q psy8969 495 LSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLI 540 (1230)
Q Consensus 495 ~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~ 540 (1230)
.++|++|+|||+++.||+|+++ ||+ +|.++.++.++...|++.++-
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999 998 578899999999999988874
No 52
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.82 E-value=1.2e-19 Score=209.80 Aligned_cols=262 Identities=21% Similarity=0.332 Sum_probs=186.4
Q ss_pred HHHhhhhcccccChHHHHHHHHHHHHHhhhc--------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc
Q psy8969 346 TQAAKILDDDHYGMEDVKKRILEFIAVSQLK--------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM 417 (1230)
Q Consensus 346 ~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~--------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~ 417 (1230)
......||+-++||+++|+.+...+...|.+ ....++.|||+||||||||++|++||+.++.||+.++....
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 4566789999999999999998777643322 23356789999999999999999999999999999884311
Q ss_pred c-------hhHH-Hhhccc-----------------------------------cccc----------------------
Q psy8969 418 S-------DVAE-IKGHRR-----------------------------------TYVG---------------------- 432 (1230)
Q Consensus 418 ~-------d~~~-i~g~~~-----------------------------------~~~g---------------------- 432 (1230)
. |..+ ++.... ...|
T Consensus 84 ~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g 163 (441)
T TIGR00390 84 TEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREG 163 (441)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcC
Confidence 1 1111 000000 0000
Q ss_pred ----------------------cCch------hHHHHHH----------------------------------------h
Q psy8969 433 ----------------------AMPG------KVIQCMK----------------------------------------K 444 (1230)
Q Consensus 433 ----------------------~~~g------~i~~~~~----------------------------------------~ 444 (1230)
.++| .+...+. .
T Consensus 164 ~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~ 243 (441)
T TIGR00390 164 ELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAID 243 (441)
T ss_pred CccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 0011 0111111 1
Q ss_pred hcCCCCEEEEecccccCCCC---CCC-----hhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecC----CCCCCCH
Q psy8969 445 TKTENPLVLIDEVDKIGKGY---SGD-----PASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN----VIDTIPE 512 (1230)
Q Consensus 445 ~~~~~pvillDEIDk~~~~~---~~~-----~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN----~~~~I~~ 512 (1230)
....+.||||||||||++.. ..| ...+||.+++...... .| .++|.++++|||..- .++.+.|
T Consensus 244 ~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~---k~--~~v~T~~ILFI~~GAF~~~kp~DlIP 318 (441)
T TIGR00390 244 AVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT---KY--GMVKTDHILFIAAGAFQLAKPSDLIP 318 (441)
T ss_pred HHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee---cc--eeEECCceeEEecCCcCCCChhhccH
Confidence 12356899999999998532 223 3578999998754332 33 578999999997543 3556889
Q ss_pred hhhcccce-eecCCCCHHHHHHHH---HHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh------hhhhHHHHHHHHH
Q psy8969 513 PLRDRMEM-IDVSGYVAEEKVAIA---AQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC------RESGVRNLQKHIE 582 (1230)
Q Consensus 513 ~L~~R~~~-i~~~~~~~~e~~~i~---~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~------~e~gvR~l~~~i~ 582 (1230)
.|.-||.+ +.+.+++.++...|+ ++.|+.+...-.....-++.++++++..|++.-. +.-|+|.|+..++
T Consensus 319 El~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE 398 (441)
T TIGR00390 319 ELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLE 398 (441)
T ss_pred HHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHH
Confidence 99999996 599999999999998 3456666655556666788999999999986643 6999999999999
Q ss_pred HHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 583 KVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 583 ~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
+++..+...........++|+.+.+.+-++
T Consensus 399 ~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~ 428 (441)
T TIGR00390 399 RLLEDISFEAPDLSGQNITIDADYVSKKLG 428 (441)
T ss_pred HHHHHHHhcCCCCCCCEEEECHHHHHhHHH
Confidence 999999988776555678899888876665
No 53
>KOG0729|consensus
Probab=99.82 E-value=1.4e-20 Score=199.92 Aligned_cols=224 Identities=23% Similarity=0.354 Sum_probs=159.8
Q ss_pred hhhcccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHH
Q psy8969 350 KILDDDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAE 422 (1230)
Q Consensus 350 ~~l~~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~ 422 (1230)
.+.-.|++|-.+-.+.|.|.+....++ |..+|+++|||||||+|||.+||++|+..++-|+|+-.+.+..
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq--- 249 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ--- 249 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH---
Confidence 344579999999999999988776654 6788999999999999999999999999999999987544443
Q ss_pred HhhccccccccCchhHHHHHHhhcCCC-CEEEEecccccCCCCC-----CC--hhhHHHhhcChhhhhhhhhhccCcccc
Q psy8969 423 IKGHRRTYVGAMPGKVIQCMKKTKTEN-PLVLIDEVDKIGKGYS-----GD--PASALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 423 i~g~~~~~~g~~~g~i~~~~~~~~~~~-pvillDEIDk~~~~~~-----~~--~~~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
+|+|+....+++.|..|++.. .+||+||||.++..+- || ....+||++.. +|.| -.
T Consensus 250 ------kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~q------ldgf----dp 313 (435)
T KOG0729|consen 250 ------KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ------LDGF----DP 313 (435)
T ss_pred ------HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHh------ccCC----CC
Confidence 899999999999999998864 5888999999986432 22 23456666532 2221 23
Q ss_pred CCceEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhhh
Q psy8969 495 LSRVLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYCR 570 (1230)
Q Consensus 495 ~s~v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~~ 570 (1230)
..|+-++++||++++++|||++ |++. ++|.-+..+-...|++- ....+-.+.++..+-+ .+-+....+-|++.|.
T Consensus 314 rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~ki-haksmsverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 314 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKI-HAKSMSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEE-eccccccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 4689999999999999999997 7764 56655555555444432 2222222333322222 2223444566899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q psy8969 571 ESGVRNLQKHIEKVTRKVALTIV 593 (1230)
Q Consensus 571 e~gvR~l~~~i~~i~r~~~~~~~ 593 (1230)
|+|+..++..-..+..|-.++.+
T Consensus 393 eagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 393 EAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred HhhHHHHHHHhhhhhHHHHHHHH
Confidence 99999987766666665544433
No 54
>KOG2462|consensus
Probab=99.82 E-value=5.4e-21 Score=205.28 Aligned_cols=107 Identities=37% Similarity=0.777 Sum_probs=98.4
Q ss_pred CCCCCCCCCCCCCCccChhHHHhhhhcccCCCceecCCCccCccccChhhHHHHHhhccCCCCccccccccccccCCchh
Q psy8969 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSS 868 (1230)
Q Consensus 789 ekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekpy~C~~~~Cgk~F~~~s~L~~H~r~Htgekpy~C~~~~C~k~F~~~~~ 868 (1230)
.+.+.|++ |+|.|.+...|+.|+|+|+ -+++|.. |||.|...+-|+-|+|+|||||||.|.. |+|+|..+++
T Consensus 159 ~ka~~C~~--C~K~YvSmpALkMHirTH~--l~c~C~i--CGKaFSRPWLLQGHiRTHTGEKPF~C~h--C~kAFADRSN 230 (279)
T KOG2462|consen 159 KKAFSCKY--CGKVYVSMPALKMHIRTHT--LPCECGI--CGKAFSRPWLLQGHIRTHTGEKPFSCPH--CGKAFADRSN 230 (279)
T ss_pred cccccCCC--CCceeeehHHHhhHhhccC--CCccccc--ccccccchHHhhcccccccCCCCccCCc--ccchhcchHH
Confidence 56788988 9999999999999999996 7899988 9999999999999999999999999975 9999999999
Q ss_pred HhhhhccccCCCCccCCCCCcccCChhhHHhHHhh
Q psy8969 869 LYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903 (1230)
Q Consensus 869 L~~H~~~H~~ekpy~C~~Cgk~F~~~~~L~~H~k~ 903 (1230)
|+-|+++|++.|+|+|..|+|+|..++.|.+|...
T Consensus 231 LRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 231 LRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred HHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999765
No 55
>KOG3608|consensus
Probab=99.81 E-value=1.3e-20 Score=204.99 Aligned_cols=199 Identities=25% Similarity=0.520 Sum_probs=168.9
Q ss_pred CCCC-CCCCCCCCCCCccChhHHHhhhhcccCCCceecCCCccCccccChhhHHHHHhhccC--CCCccccccccccccC
Q psy8969 788 SERP-FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG--EKPYVCQVRDCQKRFT 864 (1230)
Q Consensus 788 ~ekp-~~C~~~~C~k~F~~~~~L~~H~r~H~gekpy~C~~~~Cgk~F~~~s~L~~H~r~Htg--ekpy~C~~~~C~k~F~ 864 (1230)
.++| +.|.+..|.+.|.+++.|++|+|+|+++|...|+. ||.-|.++..|-.|.+.-+. ..+|.|.. |.|+|.
T Consensus 173 D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~--Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~--C~KrFa 248 (467)
T KOG3608|consen 173 DERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH--CGELFRTKTKLFDHLRRQTELNTNSFQCAQ--CFKRFA 248 (467)
T ss_pred CCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch--HHHHhccccHHHHHHHhhhhhcCCchHHHH--HHHHHh
Confidence 3444 77998889999999999999999999999999987 99999999999999887663 56899975 999999
Q ss_pred CchhHhhhhccccCCCCccCCCCCcccCChhhHHhHHhhhcCCCCCCCCCcccccchhhcccccccccccccccCcccee
Q psy8969 865 EYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSNRVSNQLISIQSSLTSYYSFVHFSGSTLFI 944 (1230)
Q Consensus 865 ~~~~L~~H~~~H~~ekpy~C~~Cgk~F~~~~~L~~H~k~hh~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 944 (1230)
+...|..|+..|-+ -|+|+.|..+-...+.|..|++.-|.
T Consensus 249 TeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~H~r~rHs-------------------------------------- 288 (467)
T KOG3608|consen 249 TEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTTHIRYRHS-------------------------------------- 288 (467)
T ss_pred HHHHHHHHHHHhhh--cccccccccCCCChHHHHHHHHhhhc--------------------------------------
Confidence 99999999998864 58999998888888888888765431
Q ss_pred eccccCCCCcCCCCCCccCCCCCccccccccchhhhccchhhhhhcccccccCCCcccccccccccccCCCcccCCCCCC
Q psy8969 945 ETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNFLSTIEPDNTFLNTRHLHLHVPEGAVKKDGPSA 1024 (1230)
Q Consensus 945 e~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~~~~tf~~~~hl~~H~~~~~~~~~~~s~ 1024 (1230)
T Consensus 289 -------------------------------------------------------------------------------- 288 (467)
T KOG3608|consen 289 -------------------------------------------------------------------------------- 288 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhhcccCCCccccccccccccccccccccCCccccccccchhhHhhhhhcccceeeecCCccchhhhhhhhhh
Q psy8969 1025 GITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIALKPLIQQQEQHKSKMFIIVDLDDVDREEDMIFELE 1104 (1230)
Q Consensus 1025 ~~~~~~~~~s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~h~~~~~~~~~~~~~~~~~~~~~e~~ 1104 (1230)
T Consensus 289 -------------------------------------------------------------------------------- 288 (467)
T KOG3608|consen 289 -------------------------------------------------------------------------------- 288 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhcCCCCCCCCCCCCCcccccCCCCCccCCCCCCCCCCchhhhccccccCCCCcccCCcccccccccCchhhhh
Q psy8969 1105 DEDLMEEEGGKQTGSSGGGGGGTVKKSTSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKA 1184 (1230)
Q Consensus 1105 ~~~~~~e~~~~~~~~s~~~~~~~~~~~t~~kpy~C~~CgK~F~s~s~Lk~H~R~HTGEKPykCpve~CgKsF~~ks~Lk~ 1184 (1230)
..+||+|+.|++.|.+-+.|.+|..+|+ +--|.|....|..+|++...+++
T Consensus 289 ----------------------------~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~ 339 (467)
T KOG3608|consen 289 ----------------------------KDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRR 339 (467)
T ss_pred ----------------------------cCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHH
Confidence 1357899999999999999999999999 77899966669999999999999
Q ss_pred hcc-cccCCC--CEeecccccCccccchhhHHHHhhhccC
Q psy8969 1185 HIR-THTGEK--PYRCAHEFCSKSFKTSGDLQKHVRTHTD 1221 (1230)
Q Consensus 1185 H~R-tHTGEK--Py~C~~e~CGKsF~~ks~LkrH~R~HtG 1221 (1230)
|++ +|.|.. ||.| ..|++.|++-.+|.+|++.-|+
T Consensus 340 H~~evhEg~np~~Y~C--H~Cdr~ft~G~~L~~HL~kkH~ 377 (467)
T KOG3608|consen 340 HFLEVHEGNNPILYAC--HCCDRFFTSGKSLSAHLMKKHG 377 (467)
T ss_pred HHHHhccCCCCCceee--ecchhhhccchhHHHHHHHhhc
Confidence 998 554644 5999 4699999999999999776544
No 56
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=2.4e-19 Score=191.49 Aligned_cols=188 Identities=23% Similarity=0.392 Sum_probs=118.1
Q ss_pred HhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcc
Q psy8969 348 AAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHR 427 (1230)
Q Consensus 348 ~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~ 427 (1230)
.+-.--+|++||+++++.+.-++.....++ ..-..++||||||+||||||+.||++++.+|..++...+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-------- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRG-EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-------- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--------
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcC-CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--------
Confidence 344455789999999999877775544433 33467899999999999999999999999998877533222
Q ss_pred ccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccC-------ccccCCceEE
Q psy8969 428 RTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLD-------VPVDLSRVLF 500 (1230)
Q Consensus 428 ~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~-------~~~d~s~v~~ 500 (1230)
++.+...+... ..+.|+|||||+++++ .....|+..++. ..+|-..+ +.+++.++.+
T Consensus 89 -------~~dl~~il~~l-~~~~ILFIDEIHRlnk----~~qe~LlpamEd----~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 89 -------AGDLAAILTNL-KEGDILFIDEIHRLNK----AQQEILLPAMED----GKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------CHHHHHHHHT---TT-EEEECTCCC--H----HHHHHHHHHHHC----SEEEEEBSSSSS-BEEEEE----EE
T ss_pred -------HHHHHHHHHhc-CCCcEEEEechhhccH----HHHHHHHHHhcc----CeEEEEeccccccceeeccCCCceE
Confidence 23333333322 3567999999999865 234555555443 23333332 4578889999
Q ss_pred EEecCCCCCCCHhhhccccee-ecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhh
Q psy8969 501 ICTANVIDTIPEPLRDRMEMI-DVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRE 571 (1230)
Q Consensus 501 I~TaN~~~~I~~~L~~R~~~i-~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e 571 (1230)
|.+|++...|++||+|||-++ .+.-|+.+|...|+++.- ..-.+.+++++...|.+ .+|+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a----------~~l~i~i~~~~~~~Ia~-rsrG 213 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA----------RILNIEIDEDAAEEIAR-RSRG 213 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC----------HCTT-EE-HHHHHHHHH-CTTT
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHH----------HHhCCCcCHHHHHHHHH-hcCC
Confidence 999999999999999999987 799999999999987632 12367888888887764 3444
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.81 E-value=9.4e-19 Score=196.99 Aligned_cols=206 Identities=25% Similarity=0.396 Sum_probs=145.1
Q ss_pred cccChHHHHHHHHHHHHHhhhc------C---CCCCceEEEeCCCCCCchHHHHHHHHHhC-------CCeEEEecCCcc
Q psy8969 355 DHYGMEDVKKRILEFIAVSQLK------G---TTQGKILCFYGPPGVGKTSIAKSIARALN-------REYFRFSVGGMS 418 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l~~~~~~------~---~~~~~~llL~GPPG~GKTslak~iA~~l~-------~~~~~~~~~~~~ 418 (1230)
+.+||++||++|.+++++.... | ...+..++|+||||||||++|+++|+.+. .+++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 4999999999999887664321 2 23446789999999999999999999863 234444332
Q ss_pred hhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCC----hhhHHHhhcChhhhhhhhhhccCcccc
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGD----PASALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~----~~~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
++.| .|+|+....+...|..+. +.||||||||.+..+...+ ....|+..++..
T Consensus 84 ---~l~~---~~~g~~~~~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~--------------- 140 (261)
T TIGR02881 84 ---DLVG---EYIGHTAQKTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN--------------- 140 (261)
T ss_pred ---Hhhh---hhccchHHHHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhcc---------------
Confidence 2222 588888888888887664 5799999999997532211 223344333321
Q ss_pred CCceEEEEecCC-----CCCCCHhhhcccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHh
Q psy8969 495 LSRVLFICTANV-----IDTIPEPLRDRME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568 (1230)
Q Consensus 495 ~s~v~~I~TaN~-----~~~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~ 568 (1230)
..++++|++++. +..++|+|++||. .|.++.|+.+|...|+++++- + ..+.++++++..+.+.+
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~-----~-----~~~~l~~~a~~~l~~~~ 210 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK-----E-----REYKLTEEAKWKLREHL 210 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH-----H-----cCCccCHHHHHHHHHHH
Confidence 145667766543 2358899999995 599999999999999987762 2 24567888887775433
Q ss_pred h--------hhhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy8969 569 C--------RESGVRNLQKHIEKVTRKVALTIVKKE 596 (1230)
Q Consensus 569 ~--------~e~gvR~l~~~i~~i~r~~~~~~~~~~ 596 (1230)
. ..+.+|.++..++.+++..+..++..+
T Consensus 211 ~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~~ 246 (261)
T TIGR02881 211 YKVDQLSSREFSNARYVRNIIEKAIRRQAVRLLDKS 246 (261)
T ss_pred HHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhccC
Confidence 2 146789999999999999888877554
No 58
>KOG0735|consensus
Probab=99.80 E-value=9.1e-19 Score=206.68 Aligned_cols=177 Identities=24% Similarity=0.330 Sum_probs=134.1
Q ss_pred cccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhh
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKG 425 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g 425 (1230)
++|++||.++|+.+.+.|.++... +.....+||||||||||||.||-++|...+..|+.+-.-.+-+
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~------ 739 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS------ 739 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH------
Confidence 389999999999999999775432 3445678999999999999999999999998887654333323
Q ss_pred ccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChh-------hHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 426 HRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPA-------SALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 426 ~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~-------~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
+|+|+.+..++..|.+|....| |+|+||+|.+++.+.-|.. +.||.-||. +.. +..
T Consensus 740 ---KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG------------~Eg-l~G 803 (952)
T KOG0735|consen 740 ---KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG------------AEG-LDG 803 (952)
T ss_pred ---HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc------------ccc-cce
Confidence 7999999999999999999877 6679999999876544433 334443333 222 678
Q ss_pred eEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCC
Q psy8969 498 VLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPE 552 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~ 552 (1230)
|.++++|.++|-|||||++ |++. +..+.++..|.+.|+.. |..+.+++...+.+
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~-ls~s~~~~~~vdl~ 860 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQV-LSNSLLKDTDVDLE 860 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHH-HhhccCCccccchH
Confidence 9999999999999999998 8885 55666677888887754 44434444444333
No 59
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.80 E-value=4.7e-19 Score=212.77 Aligned_cols=174 Identities=26% Similarity=0.391 Sum_probs=127.6
Q ss_pred HhhhhcccccChHHHHHHHHHHHHHhhh-------cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE--------EE
Q psy8969 348 AAKILDDDHYGMEDVKKRILEFIAVSQL-------KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF--------RF 412 (1230)
Q Consensus 348 ~~~~l~~d~~G~~~vK~~i~e~l~~~~~-------~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~--------~~ 412 (1230)
...+-.+|++|+++.++.|.+.+....+ .+...++++|||||||||||++|+++|+.++.+++ .+
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 3444557899999999999998865332 25667889999999999999999999999987622 22
Q ss_pred ecCCcchhHHHhhccccccccCchhHHHHHHhhcC-----CCCEEEEecccccCCCCCC----Chh----hHHHhhcChh
Q psy8969 413 SVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT-----ENPLVLIDEVDKIGKGYSG----DPA----SALLEMLDPE 479 (1230)
Q Consensus 413 ~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~-----~~pvillDEIDk~~~~~~~----~~~----~all~~ld~~ 479 (1230)
++.+ .++ ...|+|+....+...|..+.. ...||||||||.+...+.. +.. +.||..||.
T Consensus 256 ~v~~----~eL---l~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg- 327 (512)
T TIGR03689 256 NIKG----PEL---LNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG- 327 (512)
T ss_pred eccc----hhh---cccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc-
Confidence 2211 111 125888888888888876654 2448889999999754322 111 233333322
Q ss_pred hhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHHHhhcc
Q psy8969 480 QNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAAQYLIP 541 (1230)
Q Consensus 480 q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~~~l~~ 541 (1230)
..+.++|++|+|||+++.||+||++ ||+. |.++.|+.++...|++.|+-+
T Consensus 328 ------------l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 328 ------------VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ------------cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1234689999999999999999998 9985 899999999999999998743
No 60
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=9.7e-19 Score=191.01 Aligned_cols=260 Identities=24% Similarity=0.335 Sum_probs=184.6
Q ss_pred HHHHhhhhcccccChHHHHHHHHHHHHH--hhhcCC-------CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecC
Q psy8969 345 LTQAAKILDDDHYGMEDVKKRILEFIAV--SQLKGT-------TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVG 415 (1230)
Q Consensus 345 ~~~~~~~l~~d~~G~~~vK~~i~e~l~~--~~~~~~-------~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~ 415 (1230)
....+..||+-++||+.+|+.+.-.+.- ..++.. -....|||+||.|+|||.||+.+|+.|+.||.--++-
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT 131 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADAT 131 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence 6778899999999999999865322210 111111 1235689999999999999999999999999754443
Q ss_pred CcchhHHHhhccccccccCchhHHHHHHhh------cCCCCEEEEecccccCCCC---------CC-ChhhHHHhhcCh-
Q psy8969 416 GMSDVAEIKGHRRTYVGAMPGKVIQCMKKT------KTENPLVLIDEVDKIGKGY---------SG-DPASALLEMLDP- 478 (1230)
Q Consensus 416 ~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~------~~~~pvillDEIDk~~~~~---------~~-~~~~all~~ld~- 478 (1230)
.++ |. .|||+---.|+..+..+ +....||+|||||||++.. +| ....|||.+++.
T Consensus 132 tLT---EA-----GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 132 TLT---EA-----GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred chh---hc-----cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 333 32 59999777776665543 3456899999999998532 12 235799999973
Q ss_pred -----hhhhhhhhhccCccccCCceEEEEecC----------------------C----------------------CCC
Q psy8969 479 -----EQNANFLDHYLDVPVDLSRVLFICTAN----------------------V----------------------IDT 509 (1230)
Q Consensus 479 -----~q~~~f~d~~~~~~~d~s~v~~I~TaN----------------------~----------------------~~~ 509 (1230)
-|-.+-.++-.-+.+|.+|++|||-.- . -..
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFG 283 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFG 283 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcC
Confidence 233333333334568999999997211 0 013
Q ss_pred CCHhhhccccee-ecCCCCHHHHHHHH---HHhhcchhHHhcCCCCCCcccCHHHHHHHHHH-hhhhhhHHHHHHHHHHH
Q psy8969 510 IPEPLRDRMEMI-DVSGYVAEEKVAIA---AQYLIPQAMKESGLSPEQITLEPSAIQVLIKN-YCRESGVRNLQKHIEKV 584 (1230)
Q Consensus 510 I~~~L~~R~~~i-~~~~~~~~e~~~i~---~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~-~~~e~gvR~l~~~i~~i 584 (1230)
+.|.+.-|+.+| .+..++.++.+.|+ ++.|+.+-.+-.+++.-++.++++++..|.+. .-|.-|+|.||.+++.+
T Consensus 284 LIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred CcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 456666687765 66777777777776 45666655556667777889999999998754 67899999999999999
Q ss_pred HHHHHHHHhhcC-CCceEechhhhhhhcC
Q psy8969 585 TRKVALTIVKKE-SDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 585 ~r~~~~~~~~~~-~~~~~i~~~~~~~~~~ 612 (1230)
+...++++...+ ..+++|+.+.+.+...
T Consensus 364 lld~MfelPs~~~v~~v~I~~~~v~~~~~ 392 (408)
T COG1219 364 LLDVMFELPSLEDVEKVVITEEVVDGNAE 392 (408)
T ss_pred HHHHHhhCCCCCCceEEEEeHHHhCCCCC
Confidence 999999988655 4678888888775443
No 61
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.78 E-value=1.3e-18 Score=212.96 Aligned_cols=167 Identities=23% Similarity=0.340 Sum_probs=127.3
Q ss_pred hhcccccChHHHHHHHHHHHHHhh------hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHh
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQ------LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIK 424 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~------~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~ 424 (1230)
+--+|++|++++|+.+.+.+.... ..+...++++||+||||||||++|++||..++.+|+.++...+.+
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~----- 126 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE----- 126 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH-----
Confidence 344689999999999988775321 124566788999999999999999999999999999988654333
Q ss_pred hccccccccCchhHHHHHHhhcCCC-CEEEEecccccCCCCCCC-----h-----hhHHHhhcChhhhhhhhhhccCccc
Q psy8969 425 GHRRTYVGAMPGKVIQCMKKTKTEN-PLVLIDEVDKIGKGYSGD-----P-----ASALLEMLDPEQNANFLDHYLDVPV 493 (1230)
Q Consensus 425 g~~~~~~g~~~g~i~~~~~~~~~~~-pvillDEIDk~~~~~~~~-----~-----~~all~~ld~~q~~~f~d~~~~~~~ 493 (1230)
.|+|.....+...|..+.... .||||||||.++..+... . .+.||..+| ...
T Consensus 127 ----~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d-------------~~~ 189 (495)
T TIGR01241 127 ----MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD-------------GFG 189 (495)
T ss_pred ----HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhc-------------ccc
Confidence 477888888999999887655 489999999997543221 0 111222222 112
Q ss_pred cCCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhh
Q psy8969 494 DLSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 494 d~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l 539 (1230)
+..+|++|+|||+++.||++|++ ||+ .|.++.++.++...|++.++
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHA 238 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHH
Confidence 34579999999999999999997 887 57888889999999988776
No 62
>KOG3608|consensus
Probab=99.78 E-value=8.4e-20 Score=198.80 Aligned_cols=196 Identities=27% Similarity=0.531 Sum_probs=169.9
Q ss_pred CCCCCCCCCCCCccChhHHHhhhhccc------------CCC-ceecCCCccCccccChhhHHHHHhhccCCCCcccccc
Q psy8969 791 PFPCPVLGCDRSFTTSNIRKVHIRTHT------------GEK-PYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVR 857 (1230)
Q Consensus 791 p~~C~~~~C~k~F~~~~~L~~H~r~H~------------gek-py~C~~~~Cgk~F~~~s~L~~H~r~Htgekpy~C~~~ 857 (1230)
-|.|.+..|+..|.+...+.+|+..|. .++ .+.|.+.+|-+.|.++++|++|.|.|++||--.|+.
T Consensus 134 ~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~- 212 (467)
T KOG3608|consen 134 NFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPH- 212 (467)
T ss_pred hhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecch-
Confidence 378999999999999999999987763 122 388988889999999999999999999999999975
Q ss_pred ccccccCCchhHhhhhcccc--CCCCccCCCCCcccCChhhHHhHHhhhcCCCCCCCCCcccccchhhcccccccccccc
Q psy8969 858 DCQKRFTEYSSLYKHTLVHS--DIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSNRVSNQLISIQSSLTSYYSFV 935 (1230)
Q Consensus 858 ~C~k~F~~~~~L~~H~~~H~--~ekpy~C~~Cgk~F~~~~~L~~H~k~hh~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 935 (1230)
||..|+++..|--|.+.-+ ...+|.|..|.|.|.+...|..|+..|-.
T Consensus 213 -Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn----------------------------- 262 (467)
T KOG3608|consen 213 -CGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN----------------------------- 262 (467)
T ss_pred -HHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh-----------------------------
Confidence 9999999999999977544 45689999999999998888888766520
Q ss_pred cccCccceeeccccCCCCcCCCCCCccCCCCCccccccccchhhhccchhhhhhcccccccCCCcccccccccccccCCC
Q psy8969 936 HFSGSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNFLSTIEPDNTFLNTRHLHLHVPEG 1015 (1230)
Q Consensus 936 ~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~~~~tf~~~~hl~~H~~~~ 1015 (1230)
T Consensus 263 -------------------------------------------------------------------------------- 262 (467)
T KOG3608|consen 263 -------------------------------------------------------------------------------- 262 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCccchhhhhhhcccCCCccccccccccccccccccccCCccccccccchhhHhhhhhcccceeeecCCccch
Q psy8969 1016 AVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIALKPLIQQQEQHKSKMFIIVDLDDVDR 1095 (1230)
Q Consensus 1016 ~~~~~~~s~~~~~~~~~~s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~l~~~~~~h~~~~~~~~~~~~~~~ 1095 (1230)
T Consensus 263 -------------------------------------------------------------------------------- 262 (467)
T KOG3608|consen 263 -------------------------------------------------------------------------------- 262 (467)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCCCCCCCCCCcccccCCCCCccCCCCCCCCCCchhhhcccc-ccCCCCcccCCcccccc
Q psy8969 1096 EEDMIFELEDEDLMEEEGGKQTGSSGGGGGGTVKKSTSSENNVCPECKKTFSSAHHMKVHLR-IHSGIRPYKCPVEYCEK 1174 (1230)
Q Consensus 1096 ~~~~~~e~~~~~~~~e~~~~~~~~s~~~~~~~~~~~t~~kpy~C~~CgK~F~s~s~Lk~H~R-~HTGEKPykCpve~CgK 1174 (1230)
.|+|+.|+-+-+..++|..|+| .|+..|||+|+ .|.+
T Consensus 263 ----------------------------------------~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd--~Cd~ 300 (467)
T KOG3608|consen 263 ----------------------------------------CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCD--ECDT 300 (467)
T ss_pred ----------------------------------------cccccccccCCCChHHHHHHHHhhhccCCCcccc--chhh
Confidence 2568999999999999999999 89999999995 5999
Q ss_pred cccCchhhhhhcccccCCCCEeecccccCccccchhhHHHHhhhcc
Q psy8969 1175 AFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220 (1230)
Q Consensus 1175 sF~~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF~~ks~LkrH~R~Ht 1220 (1230)
+|.+.+.|.+|..+|+ +--|+|.++-|..+|++..++++|++.|+
T Consensus 301 ~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh 345 (467)
T KOG3608|consen 301 RCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH 345 (467)
T ss_pred hhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 66799987779999999999999999876
No 63
>KOG0740|consensus
Probab=99.78 E-value=1.3e-19 Score=209.99 Aligned_cols=181 Identities=25% Similarity=0.335 Sum_probs=136.4
Q ss_pred HHHHhhhhcccccChHHHHHHHHHHHHHhhhcC------CCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcc
Q psy8969 345 LTQAAKILDDDHYGMEDVKKRILEFIAVSQLKG------TTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS 418 (1230)
Q Consensus 345 ~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~------~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~ 418 (1230)
+...+++.++|+.|++++|+.+.+++.+.-+++ ....++|||+||||+|||+||++||.+.++.|+.++.+++.
T Consensus 144 ~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 144 GDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred hccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 445667788999999999999999987766642 23456899999999999999999999999999999987776
Q ss_pred hhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcc-ccCC
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVP-VDLS 496 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~-~d~s 496 (1230)
. +|+|+....|+..|+.|+...| ||||||||++...+....... .+.-...|+-.+.... .--+
T Consensus 224 s---------K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~-----srr~ktefLiq~~~~~s~~~d 289 (428)
T KOG0740|consen 224 S---------KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHES-----SRRLKTEFLLQFDGKNSAPDD 289 (428)
T ss_pred h---------hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCccccc-----chhhhhHHHhhhccccCCCCC
Confidence 6 8999999999999999999888 999999999875543322211 0111122333333222 2235
Q ss_pred ceEEEEecCCCCCCCHhhhcccce-eecCCCCHHHHHHHHHHhh
Q psy8969 497 RVLFICTANVIDTIPEPLRDRMEM-IDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~~R~~~-i~~~~~~~~e~~~i~~~~l 539 (1230)
+|++|+|||.+..||.++++||.- +.++.+..+....++.+.|
T Consensus 290 rvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll 333 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLL 333 (428)
T ss_pred eEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHH
Confidence 999999999999999999999985 4555555555555555443
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=7.5e-18 Score=191.48 Aligned_cols=218 Identities=21% Similarity=0.306 Sum_probs=155.5
Q ss_pred ccHHHHhhhhcccccChHHHHHHHHHHHHHhh---h---cCC---CCCceEEEeCCCCCCchHHHHHHHHHhC-------
Q psy8969 343 LDLTQAAKILDDDHYGMEDVKKRILEFIAVSQ---L---KGT---TQGKILCFYGPPGVGKTSIAKSIARALN------- 406 (1230)
Q Consensus 343 ~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~---~---~~~---~~~~~llL~GPPG~GKTslak~iA~~l~------- 406 (1230)
-.|+...+.||++++||++||+.|.+.+++.. . .|. .++..++|+||||||||++|+++|+.+.
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~ 90 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRK 90 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc
Confidence 45788889999999999999999988765421 1 122 2345799999999999999999999874
Q ss_pred CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCC-----ChhhHHHhhcChhhh
Q psy8969 407 REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSG-----DPASALLEMLDPEQN 481 (1230)
Q Consensus 407 ~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~-----~~~~all~~ld~~q~ 481 (1230)
.+|+.++... +.+ .|+|.....+...|..+ .+.||||||||.+...... ...+.|+++|+..
T Consensus 91 ~~~v~v~~~~------l~~---~~~g~~~~~~~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~-- 157 (284)
T TIGR02880 91 GHLVSVTRDD------LVG---QYIGHTAPKTKEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ-- 157 (284)
T ss_pred ceEEEecHHH------HhH---hhcccchHHHHHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC--
Confidence 2677776422 222 47777766777777765 3479999999998532211 1234555555421
Q ss_pred hhhhhhccCccccCCceEEEEecCC--C---CCCCHhhhcccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcc
Q psy8969 482 ANFLDHYLDVPVDLSRVLFICTANV--I---DTIPEPLRDRME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQIT 555 (1230)
Q Consensus 482 ~~f~d~~~~~~~d~s~v~~I~TaN~--~---~~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~ 555 (1230)
..++++|++++. . ..++|+|++||. .|.+++|+.+|...|+..++-. . ...
T Consensus 158 -------------~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~-----~-----~~~ 214 (284)
T TIGR02880 158 -------------RDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE-----Q-----QYR 214 (284)
T ss_pred -------------CCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH-----h-----ccc
Confidence 146777777653 2 245899999997 6999999999999999887632 2 234
Q ss_pred cCHHHHHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy8969 556 LEPSAIQVLIKNY------CRESGVRNLQKHIEKVTRKVALTIVKKE 596 (1230)
Q Consensus 556 ~~~~~~~~li~~~------~~e~gvR~l~~~i~~i~r~~~~~~~~~~ 596 (1230)
++++++..+.+.. ...+++|.|++.++.++...+..+....
T Consensus 215 l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~~ 261 (284)
T TIGR02880 215 FSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCDL 261 (284)
T ss_pred cCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6677777665421 3457799999999999998888887553
No 65
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=9e-18 Score=181.87 Aligned_cols=182 Identities=26% Similarity=0.417 Sum_probs=141.8
Q ss_pred hhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccc
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTY 430 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~ 430 (1230)
..-+|.+||+++|+.+.-||...+.++..- -.+|||||||.||||||..||++||.++-..+ |.+-
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~l-DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-Gp~l------------ 88 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEAL-DHVLLFGPPGLGKTTLAHIIANELGVNLKITS-GPAL------------ 88 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCc-CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-cccc------------
Confidence 344689999999999999998888877544 45779999999999999999999998864433 2222
Q ss_pred cccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccC-------ccccCCceEEEEe
Q psy8969 431 VGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLD-------VPVDLSRVLFICT 503 (1230)
Q Consensus 431 ~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~-------~~~d~s~v~~I~T 503 (1230)
+.||.+...+.. -..+.|+|||||+++++ +.-|+|.|...+..+|-.++ +.+|+..+.+|.+
T Consensus 89 --eK~gDlaaiLt~-Le~~DVLFIDEIHrl~~--------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 89 --EKPGDLAAILTN-LEEGDVLFIDEIHRLSP--------AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred --cChhhHHHHHhc-CCcCCeEEEehhhhcCh--------hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 246666555443 45688999999999865 45677777766666776664 4589999999999
Q ss_pred cCCCCCCCHhhhccccee-ecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHH
Q psy8969 504 ANVIDTIPEPLRDRMEMI-DVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKN 567 (1230)
Q Consensus 504 aN~~~~I~~~L~~R~~~i-~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~ 567 (1230)
|.+...|..||+|||-++ .+.-|+.+|...|+.+.- ++ -++.+++++...|.+.
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a--~~--------l~i~i~~~~a~eIA~r 212 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA--KI--------LGIEIDEEAALEIARR 212 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHH--HH--------hCCCCChHHHHHHHHh
Confidence 999999999999999975 889999999999987753 11 2567777877777643
No 66
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.4e-18 Score=205.84 Aligned_cols=187 Identities=25% Similarity=0.325 Sum_probs=137.7
Q ss_pred ccccHHHHhhhhcc-------cccChHHHHHHHHHHHHHhh------hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC
Q psy8969 341 ENLDLTQAAKILDD-------DHYGMEDVKKRILEFIAVSQ------LKGTTQGKILCFYGPPGVGKTSIAKSIARALNR 407 (1230)
Q Consensus 341 ~~~~~~~~~~~l~~-------d~~G~~~vK~~i~e~l~~~~------~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~ 407 (1230)
-.++..+|+....+ |+.|.+++|+.+.|.+.-.+ .-|..-|++++|+||||||||+|||++|.+.+.
T Consensus 130 ~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 130 FSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred cCCChHHHHHhcccccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 45566666665554 89999999999877664322 124466889999999999999999999999999
Q ss_pred CeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhh
Q psy8969 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLD 486 (1230)
Q Consensus 408 ~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d 486 (1230)
||+.+|.++... .|||-...++++.|..++.+.| ||||||||.+++.+...+...--+ .+|.-+.+-
T Consensus 210 PFf~iSGS~FVe---------mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gggnde---rEQTLNQlL 277 (596)
T COG0465 210 PFFSISGSDFVE---------MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDE---REQTLNQLL 277 (596)
T ss_pred Cceeccchhhhh---------hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchH---HHHHHHHHH
Confidence 999999876655 6999999999999999999877 889999999997653111100000 011111111
Q ss_pred hccCccccCCceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhh
Q psy8969 487 HYLDVPVDLSRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 487 ~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l 539 (1230)
--++..-..+.|++|++||+++-+|+||++ ||+ .|.+..|....+.+|.+-|+
T Consensus 278 vEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 278 VEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred hhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 112222244689999999999999999997 887 46777777788888888655
No 67
>CHL00176 ftsH cell division protein; Validated
Probab=99.74 E-value=1.8e-17 Score=205.44 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=147.5
Q ss_pred ccccChHHHHHHHHHHHHHhhh------cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQL------KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHR 427 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~------~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~ 427 (1230)
+|+.|++++|+.+.+.+..... .+...++++||+||||||||++|++||..++.||+.++.+.+.+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~-------- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE-------- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH--------
Confidence 6899999999999887654222 14456788999999999999999999999999999988655433
Q ss_pred ccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCC-----Ch--hhHHHhhcChhhhhhhhhhccCccccCCceE
Q psy8969 428 RTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSG-----DP--ASALLEMLDPEQNANFLDHYLDVPVDLSRVL 499 (1230)
Q Consensus 428 ~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~-----~~--~~all~~ld~~q~~~f~d~~~~~~~d~s~v~ 499 (1230)
.++|.....+...|..+....| ||||||||.++..+.. +. ...|.++|.. +|. ..+..+|+
T Consensus 255 -~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~------~dg----~~~~~~Vi 323 (638)
T CHL00176 255 -MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTE------MDG----FKGNKGVI 323 (638)
T ss_pred -HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhh------hcc----ccCCCCee
Confidence 3566666778888988877655 7889999999754311 11 1122222211 111 12345899
Q ss_pred EEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 500 FICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 500 ~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
+|+|||+++.||++|++ ||+ .|.+..|+.++...|++.++-.. .+ .++..+..+. ..|.+...+.
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----~~------~~d~~l~~lA-~~t~G~sgaD 391 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----KL------SPDVSLELIA-RRTPGFSGAD 391 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----cc------chhHHHHHHH-hcCCCCCHHH
Confidence 99999999999999997 786 58889999999999998876321 11 1233344444 3444444555
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhc
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
|+..+......++ ... ...|+.+++.+.+
T Consensus 392 L~~lvneAal~a~----r~~--~~~It~~dl~~Ai 420 (638)
T CHL00176 392 LANLLNEAAILTA----RRK--KATITMKEIDTAI 420 (638)
T ss_pred HHHHHHHHHHHHH----HhC--CCCcCHHHHHHHH
Confidence 5544443332222 222 2246767666554
No 68
>KOG2028|consensus
Probab=99.73 E-value=4e-17 Score=180.39 Aligned_cols=248 Identities=20% Similarity=0.272 Sum_probs=163.4
Q ss_pred hhhHHHHhhc-CCCCCcccccccHHHHhhhhcccccChHHHHHH---HHHHHHHhhhcCCCCCceEEEeCCCCCCchHHH
Q psy8969 323 TRNYLDWLTS-LPWGIQSEENLDLTQAAKILDDDHYGMEDVKKR---ILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIA 398 (1230)
Q Consensus 323 ~~~yl~~~~~-lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~---i~e~l~~~~~~~~~~~~~llL~GPPG~GKTsla 398 (1230)
.+.-..||++ +|.. ++++-.--+|++||+.+.-. |..+|. ...-+.|+|||||||||||||
T Consensus 115 ~~~e~R~~~qh~PLa---------ermRPktL~dyvGQ~hlv~q~gllrs~ie------q~~ipSmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 115 AAEEIRQMLQHKPLA---------ERMRPKTLDDYVGQSHLVGQDGLLRSLIE------QNRIPSMILWGPPGTGKTTLA 179 (554)
T ss_pred hhHHHHHHhccCChh---------hhcCcchHHHhcchhhhcCcchHHHHHHH------cCCCCceEEecCCCCchHHHH
Confidence 3334556654 5653 23333334578888877632 223332 233356889999999999999
Q ss_pred HHHHHHhCCC---eEEEecC--CcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHH
Q psy8969 399 KSIARALNRE---YFRFSVG--GMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALL 473 (1230)
Q Consensus 399 k~iA~~l~~~---~~~~~~~--~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all 473 (1230)
+.||.....+ |+.+|.- ++.|...|....+.+ ........|||||||+++++
T Consensus 180 rlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~------------~~l~krkTilFiDEiHRFNk----------- 236 (554)
T KOG2028|consen 180 RLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNE------------KSLTKRKTILFIDEIHRFNK----------- 236 (554)
T ss_pred HHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHH------------HhhhcceeEEEeHHhhhhhh-----------
Confidence 9999998877 5656542 333333322111111 11122356999999999866
Q ss_pred hhcChhhhhhhhhhccCccccCCceEEE--EecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhc---C
Q psy8969 474 EMLDPEQNANFLDHYLDVPVDLSRVLFI--CTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKES---G 548 (1230)
Q Consensus 474 ~~ld~~q~~~f~d~~~~~~~d~s~v~~I--~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~---g 548 (1230)
.|++.|+.+ ++...|++| +|.|+...+..||++||.||.+..++.++...|+.+.+..-.-.+. +
T Consensus 237 -----sQQD~fLP~-----VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~ 306 (554)
T KOG2028|consen 237 -----SQQDTFLPH-----VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDP 306 (554)
T ss_pred -----hhhhcccce-----eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCC
Confidence 578888888 566788899 6779999999999999999999999999999998886531111122 4
Q ss_pred CCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCCcccccccc
Q psy8969 549 LSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLF 622 (1230)
Q Consensus 549 l~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 622 (1230)
+....+.+++.+++.+... ..+..|.....++.++.-.. .-++....+.++.+++.+.|...-..||++-
T Consensus 307 l~n~s~~ve~siidyla~l--sdGDaR~aLN~Lems~~m~~--tr~g~~~~~~lSidDvke~lq~s~~~YDr~G 376 (554)
T KOG2028|consen 307 LPNSSMFVEDSIIDYLAYL--SDGDARAALNALEMSLSMFC--TRSGQSSRVLLSIDDVKEGLQRSHILYDRAG 376 (554)
T ss_pred CCCcchhhhHHHHHHHHHh--cCchHHHHHHHHHHHHHHHH--hhcCCcccceecHHHHHHHHhhccceecccc
Confidence 5454567888888887633 45566666666666533111 1133446678999999999987777777653
No 69
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.73 E-value=8e-18 Score=217.24 Aligned_cols=150 Identities=11% Similarity=0.170 Sum_probs=104.2
Q ss_pred CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhH-------HH-hhc----------------------
Q psy8969 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVA-------EI-KGH---------------------- 426 (1230)
Q Consensus 377 ~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~-------~i-~g~---------------------- 426 (1230)
|...+++|||+||||||||.||||||...++||+.++++.+.+.. .| .|.
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 345678999999999999999999999999999999975543210 00 000
Q ss_pred --cccccccCch--hHHHHHHhhcCCCC-EEEEecccccCCCCCCCh-hhHHHhhcChhhhhhhhhhccCccccCCceEE
Q psy8969 427 --RRTYVGAMPG--KVIQCMKKTKTENP-LVLIDEVDKIGKGYSGDP-ASALLEMLDPEQNANFLDHYLDVPVDLSRVLF 500 (1230)
Q Consensus 427 --~~~~~g~~~g--~i~~~~~~~~~~~p-villDEIDk~~~~~~~~~-~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~ 500 (1230)
...++|+..+ +|...|..|+.+.| ||+|||||.++....... .+.|+..||... + .....+|+|
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~---------~-~~s~~~VIV 1775 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC---------E-RCSTRNILV 1775 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc---------c-cCCCCCEEE
Confidence 0112333334 48889999999887 777999999986522222 344555444310 0 012468999
Q ss_pred EEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHH
Q psy8969 501 ICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 501 I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~ 536 (1230)
|||||+++.|||||++ ||+. |.+..+...+..+++.
T Consensus 1776 IAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1776 IASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred EEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHH
Confidence 9999999999999998 9984 6677666666555543
No 70
>KOG3623|consensus
Probab=99.72 E-value=9.9e-18 Score=196.09 Aligned_cols=84 Identities=37% Similarity=0.740 Sum_probs=78.9
Q ss_pred ccCCCCCccCCCCCCCCCCchhhhccccccCCCCcccCCcccccccccCchhhhhhcccccCCCCEeecccccCccccch
Q psy8969 1130 KSTSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTS 1209 (1230)
Q Consensus 1130 ~~t~~kpy~C~~CgK~F~s~s~Lk~H~R~HTGEKPykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF~~k 1209 (1230)
..+....|.|+.|+|.|..+|+|.||.--|||.|||+| .+|.|+|+.+..|..|+|.|+|||||+|+ .|+|+|+.+
T Consensus 888 ~kte~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC--~iCkKAFKHKHHLtEHkRLHSGEKPfQCd--KClKRFSHS 963 (1007)
T KOG3623|consen 888 AKTEDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQC--IICKKAFKHKHHLTEHKRLHSGEKPFQCD--KCLKRFSHS 963 (1007)
T ss_pred ccCccccchHHHHHHHHHhhHHHHHhhhhhcCCCCccc--chhhHhhhhhhhhhhhhhhccCCCcchhh--hhhhhcccc
Confidence 34556789999999999999999999999999999999 56999999999999999999999999995 699999999
Q ss_pred hhHHHHhh
Q psy8969 1210 GDLQKHVR 1217 (1230)
Q Consensus 1210 s~LkrH~R 1217 (1230)
+++..||.
T Consensus 964 GSYSQHMN 971 (1007)
T KOG3623|consen 964 GSYSQHMN 971 (1007)
T ss_pred cchHhhhc
Confidence 99999996
No 71
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.70 E-value=1.2e-17 Score=200.56 Aligned_cols=94 Identities=23% Similarity=0.437 Sum_probs=86.4
Q ss_pred CcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccccccccCchhhH
Q psy8969 685 AVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYI 764 (1230)
Q Consensus 685 ~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~v 764 (1230)
|+||+||++.++||+||+|++.++|++.+++|+|||+|.|.|.||+|+-.++++|++.|+++||+|.+|..+. .
T Consensus 351 ~~~k~g~~~DLaIa~ailsa~~~~~~~~~~~~~GEl~L~G~vr~v~g~~~~~~~a~~~g~~~~ivP~~n~~e~------~ 424 (446)
T PRK11823 351 GLKITEPAADLAVALAIASSLRDRPLPPDTVVFGEVGLTGEIRPVPRIERRLKEAAKLGFKRAIVPKGNLPKK------P 424 (446)
T ss_pred CcccCCccccHHHHHHHHHhccCCCCCCCeEEEEecCCCeeEeccCCHHHHHHHHHHCCCCEEEeCCcccccc------c
Confidence 5899999999999999999999999999999999999999999999999999999999999999999997542 2
Q ss_pred hhccceecccchhhhhhccc
Q psy8969 765 REGLNVHFVSEWRQVYDLVF 784 (1230)
Q Consensus 765 r~~l~i~fvs~~~eVl~ia~ 784 (1230)
..+++++.+++..++++..+
T Consensus 425 ~~~i~v~~v~~l~e~~~~l~ 444 (446)
T PRK11823 425 PKGIEVIGVKTLAEALELLF 444 (446)
T ss_pred cCCCEEEEeCCHHHHHHHHh
Confidence 24799999999999987654
No 72
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=6.6e-17 Score=206.60 Aligned_cols=165 Identities=24% Similarity=0.362 Sum_probs=127.0
Q ss_pred cccccChHHHHHHHHHHHHHhhh-------cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhh
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQL-------KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKG 425 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~-------~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g 425 (1230)
-+|++|++++++.|.+++..... .+...++++||+||||||||++|++||+.++.+|+.++...+..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~------ 250 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS------ 250 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc------
Confidence 46799999999999999865422 24567889999999999999999999999999999887543322
Q ss_pred ccccccccCchhHHHHHHhhcCCC-CEEEEecccccCCCCCCC-------hhhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 426 HRRTYVGAMPGKVIQCMKKTKTEN-PLVLIDEVDKIGKGYSGD-------PASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 426 ~~~~~~g~~~g~i~~~~~~~~~~~-pvillDEIDk~~~~~~~~-------~~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
.|.|.....+...|..+.... .||||||||.+...+... ..+.|+.++|.. .+...
T Consensus 251 ---~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l-------------~~~~~ 314 (733)
T TIGR01243 251 ---KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL-------------KGRGR 314 (733)
T ss_pred ---ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc-------------ccCCC
Confidence 477888888888888877665 489999999997543211 112344444321 23457
Q ss_pred eEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhh
Q psy8969 498 VLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l 539 (1230)
+++|+|||.++.||++|++ ||+ .|.+..++.++...|++.+.
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHT 359 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHh
Confidence 8999999999999999997 886 57888888899988887543
No 73
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.69 E-value=2e-16 Score=190.06 Aligned_cols=101 Identities=27% Similarity=0.487 Sum_probs=87.9
Q ss_pred cccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHH
Q psy8969 662 FSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKR 741 (1230)
Q Consensus 662 ~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r 741 (1230)
|...++++.+. | |++||||++.++||+||+|++.++|++++++|+|||+|.|.|.||+|+..++++|++
T Consensus 353 ~~~~di~vNl~-g----------gl~~~~~~~DLaia~ailss~~~~~~~~~~~~~GElgL~Gevr~v~g~~~~~~~a~~ 421 (454)
T TIGR00416 353 LADQDVFLNVA-G----------GVKVSEPAADLALLIAIVSSFRDRPLDPDLVFLGEVGLAGEIRPVPSLEERLKEAAK 421 (454)
T ss_pred CCCceEEEEcc-C----------CcccCCccccHHHHHHHHHhCCCCCCCCCEEEEEEecCCeEEEeeCCHHHHHHHHHH
Confidence 34455666665 3 489999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeecCccccccccCchhhHhhccceecccchhhh
Q psy8969 742 VGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQV 779 (1230)
Q Consensus 742 ~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eV 779 (1230)
.|+++||+|.+|.++ .. ..+++++.+++..++
T Consensus 422 ~G~~~~ivP~~n~~e-~~-----~~~i~i~~v~~l~e~ 453 (454)
T TIGR00416 422 LGFKRAIVPKANSPK-TA-----PEGIKVIGVKKVGDA 453 (454)
T ss_pred cCCCEEEeCcccccc-cc-----cCCcEEEEcCcHHHh
Confidence 999999999999764 11 257889988887765
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=2.8e-16 Score=186.40 Aligned_cols=216 Identities=20% Similarity=0.266 Sum_probs=143.8
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE--EecCC-----------cc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR--FSVGG-----------MS 418 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~--~~~~~-----------~~ 418 (1230)
-=+|++|++.+.+.|..++... ..+..+||+|||||||||+|+++|+.++..... ..++. ..
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~-----ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSG-----KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISS 90 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCc
Confidence 3367999999999988877532 234568999999999999999999999863100 00000 00
Q ss_pred hhHHHhhccccccccCchhHHHHHHh--hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKK--TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~--~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
|..++.+....-+.. -..++..+.. ......|+||||+|.+.. +..++||..|+. ...
T Consensus 91 dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~----~A~NALLKtLEE---------------Pp~ 150 (484)
T PRK14956 91 DVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTD----QSFNALLKTLEE---------------PPA 150 (484)
T ss_pred cceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCH----HHHHHHHHHhhc---------------CCC
Confidence 111111000000000 0011111111 122456999999999854 467888888753 125
Q ss_pred ceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 497 RVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
+++||++||.++.|++++++||.++.|..++.++....+++.+ .. +.+.++++++..|++. .++++|.
T Consensus 151 ~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~-----~~-----Egi~~e~eAL~~Ia~~--S~Gd~Rd 218 (484)
T PRK14956 151 HIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC-----KI-----ENVQYDQEGLFWIAKK--GDGSVRD 218 (484)
T ss_pred ceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCChHHH
Confidence 8999999999999999999999999999999988776655533 22 4578899999988865 5788999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
....++.++.. .. . .|+.+.+.+.+|..
T Consensus 219 AL~lLeq~i~~-------~~-~--~it~~~V~~~lg~~ 246 (484)
T PRK14956 219 MLSFMEQAIVF-------TD-S--KLTGVKIRKMIGYH 246 (484)
T ss_pred HHHHHHHHHHh-------CC-C--CcCHHHHHHHhCCC
Confidence 88888875521 11 1 37888888888643
No 75
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.66 E-value=2.6e-16 Score=197.27 Aligned_cols=166 Identities=23% Similarity=0.364 Sum_probs=125.6
Q ss_pred cccccChHHHHHHHHHHHHHhh------hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhc
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQ------LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGH 426 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~------~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~ 426 (1230)
-+|++|++.+++++.+.+.... ..+...+++++|+||||||||++|+++|..++.||+.++.+.+.+
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~------- 223 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE------- 223 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH-------
Confidence 3578999999999888764321 112344577999999999999999999999999999998755433
Q ss_pred cccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCCCC-----Ch-----hhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 427 RRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGYSG-----DP-----ASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 427 ~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~~~-----~~-----~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
.|+|.....+...|..+....| ||||||||.++..+.. +. .+.||..+|. + .+.
T Consensus 224 --~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg---------~----~~~ 288 (644)
T PRK10733 224 --MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG---------F----EGN 288 (644)
T ss_pred --hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc---------c----cCC
Confidence 4778778888999998887666 8889999999754321 11 1222222221 1 234
Q ss_pred CceEEEEecCCCCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhc
Q psy8969 496 SRVLFICTANVIDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLI 540 (1230)
Q Consensus 496 s~v~~I~TaN~~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~ 540 (1230)
..|+||+|||+++.||++|++ ||+ .|.++.++.++...|++.++-
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 679999999999999999997 997 578888888899999888763
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=4.6e-16 Score=190.06 Aligned_cols=217 Identities=21% Similarity=0.259 Sum_probs=142.7
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE--EecCCcchhHHHhh--cc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR--FSVGGMSDVAEIKG--HR 427 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~--~~~~~~~d~~~i~g--~~ 427 (1230)
.-+|++|++.+++.|..++... ..+..+||+|||||||||+|++||+.|+..--. ..++.......|.. |.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc
Confidence 4468999999999999987532 234567899999999999999999999753100 00110011111110 00
Q ss_pred cc-cccc----CchhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 428 RT-YVGA----MPGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 428 ~~-~~g~----~~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
.. .+.+ .-..|++.+..+ .....||||||+|.|.. ...++||+.|+.. -.+
T Consensus 89 DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~----~A~NALLKtLEEP---------------P~~ 149 (830)
T PRK07003 89 DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN----HAFNAMLKTLEEP---------------PPH 149 (830)
T ss_pred eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH----HHHHHHHHHHHhc---------------CCC
Confidence 00 0000 001223333322 12346999999999854 3467888887641 247
Q ss_pred eEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHH
Q psy8969 498 VLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNL 577 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l 577 (1230)
+.||++||..+.|+++|+|||..|.|..++.++...++.+.+ . .+.|.++++++..|++. .++++|..
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il-----~-----~EgI~id~eAL~lIA~~--A~GsmRdA 217 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERIL-----G-----EERIAFEPQALRLLARA--AQGSMRDA 217 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHH-----H-----HcCCCCCHHHHHHHHHH--cCCCHHHH
Confidence 899999999999999999999999999999999887776643 2 24678899999888865 46778887
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 578 QKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 578 ~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
...+...+... .. .|+.+.|.+.+|..
T Consensus 218 LsLLdQAia~~------~~----~It~~~V~~~LG~~ 244 (830)
T PRK07003 218 LSLTDQAIAYS------AN----EVTETAVSGMLGAL 244 (830)
T ss_pred HHHHHHHHHhc------cC----CcCHHHHHHHhCCC
Confidence 77766655321 11 26666666666643
No 77
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=9.6e-16 Score=185.40 Aligned_cols=213 Identities=21% Similarity=0.268 Sum_probs=144.3
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe----EE--------------Ee
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY----FR--------------FS 413 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~----~~--------------~~ 413 (1230)
--+|++|++.+++.|..++....+ +..+||+||+||||||+|+.||+.|+..- .. |.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRL-----pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRL-----HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEID 88 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHH
Confidence 346899999999999998864332 35689999999999999999999998510 00 00
Q ss_pred cCCcchhHHHhhccccccccCchhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhc
Q psy8969 414 VGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHY 488 (1230)
Q Consensus 414 ~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~ 488 (1230)
.|...|..++.+.....+ ..|++.+... .....||||||+|.|+. ...++||+.|+.
T Consensus 89 aG~hpDviEIdAas~~gV----DdIReLie~~~~~P~~gr~KViIIDEah~Ls~----~AaNALLKTLEE---------- 150 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGV----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----HAFNAMLKTLEE---------- 150 (700)
T ss_pred cCCCCcceEecccccCCH----HHHHHHHHHHHhchhcCCceEEEEEChHhcCH----HHHHHHHHhhcc----------
Confidence 111112112211111111 1233333221 12345999999999854 357888888764
Q ss_pred cCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHh
Q psy8969 489 LDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568 (1230)
Q Consensus 489 ~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~ 568 (1230)
.-.+++||++||.++.|++.++|||..+.|..++.++....+++.+ .. +.+.++++++..|++.
T Consensus 151 -----PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il-----~~-----Egi~~d~eAL~~IA~~- 214 (700)
T PRK12323 151 -----PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAIL-----GE-----EGIAHEVNALRLLAQA- 214 (700)
T ss_pred -----CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH-
Confidence 1257899999999999999999999999999999999877776654 22 3466788888887755
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 569 CRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 569 ~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
.++++|...+.++..+.. .. -.|+.+.+.+.+|..
T Consensus 215 -A~Gs~RdALsLLdQaia~-------~~---~~It~~~V~~~LG~~ 249 (700)
T PRK12323 215 -AQGSMRDALSLTDQAIAY-------SA---GNVSEEAVRGMLGAI 249 (700)
T ss_pred -cCCCHHHHHHHHHHHHHh-------cc---CCcCHHHHHHHhCCC
Confidence 567788877776654421 11 137788888877743
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=9.9e-16 Score=184.56 Aligned_cols=205 Identities=22% Similarity=0.376 Sum_probs=140.6
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC------------------------
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR------------------------ 407 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~------------------------ 407 (1230)
.-+|++|++.+++.|..++... ..+..+||+|||||||||+|+++|+.++.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 3467999999999888877532 23456899999999999999999999875
Q ss_pred CeEEEecCCcchhHHHhhccccccccCchhHHHHHHh--hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhh
Q psy8969 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKK--TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFL 485 (1230)
Q Consensus 408 ~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~--~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~ 485 (1230)
.++.++.+.-....+++ .+++.... ......||||||+|.+.. +..++||..|+.
T Consensus 87 dv~el~aa~~~gid~iR------------~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----~a~~~LLk~LE~------- 143 (472)
T PRK14962 87 DVIELDAASNRGIDEIR------------KIRDAVGYRPMEGKYKVYIIDEVHMLTK----EAFNALLKTLEE------- 143 (472)
T ss_pred ccEEEeCcccCCHHHHH------------HHHHHHhhChhcCCeEEEEEEChHHhHH----HHHHHHHHHHHh-------
Confidence 23344332111111111 11111110 112346999999998843 234566655542
Q ss_pred hhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHH
Q psy8969 486 DHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLI 565 (1230)
Q Consensus 486 d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li 565 (1230)
..++++||++||.+..|+++|++||.++.+.+++.++...++++.+ +. +.+.++++++..|+
T Consensus 144 --------p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~-----~~-----egi~i~~eal~~Ia 205 (472)
T PRK14962 144 --------PPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVA-----EA-----EGIEIDREALSFIA 205 (472)
T ss_pred --------CCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHH
Confidence 1246788877777789999999999999999999999877776644 22 35678999999998
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 566 KNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 566 ~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
+. ..+++|.+...++.++.. . + . .||.+.+.+.+|..
T Consensus 206 ~~--s~GdlR~aln~Le~l~~~-----~-~--~--~It~e~V~~~l~~~ 242 (472)
T PRK14962 206 KR--ASGGLRDALTMLEQVWKF-----S-E--G--KITLETVHEALGLI 242 (472)
T ss_pred HH--hCCCHHHHHHHHHHHHHh-----c-C--C--CCCHHHHHHHHcCC
Confidence 75 367899888888775532 1 1 1 28899998888754
No 79
>PLN03025 replication factor C subunit; Provisional
Probab=99.65 E-value=2e-15 Score=174.99 Aligned_cols=201 Identities=19% Similarity=0.306 Sum_probs=135.2
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC-----CeEEEecCCcchhHHHhhccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR-----EYFRFSVGGMSDVAEIKGHRR 428 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~-----~~~~~~~~~~~d~~~i~g~~~ 428 (1230)
+|++|++++.++|..++.. ...+.+||+||||||||++|+++|+++.. .++.++.++......++.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~--- 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRN--- 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHH---
Confidence 4788999999988877642 22346899999999999999999999832 244444332221111111
Q ss_pred cccccCchhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 429 TYVGAMPGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 429 ~~~g~~~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
++..+... .....||+|||+|.+.. +..++|+..++. + -..+.||++
T Consensus 84 ---------~i~~~~~~~~~~~~~~~kviiiDE~d~lt~----~aq~aL~~~lE~-------------~--~~~t~~il~ 135 (319)
T PLN03025 84 ---------KIKMFAQKKVTLPPGRHKIVILDEADSMTS----GAQQALRRTMEI-------------Y--SNTTRFALA 135 (319)
T ss_pred ---------HHHHHHhccccCCCCCeEEEEEechhhcCH----HHHHHHHHHHhc-------------c--cCCceEEEE
Confidence 11111111 11346999999999853 345666665532 1 124568888
Q ss_pred cCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8969 504 ANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEK 583 (1230)
Q Consensus 504 aN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~ 583 (1230)
+|....|.++|++|+.++.+..++.++...++.+.. ++ +.+.++++++..+++. .++++|.+-..++.
T Consensus 136 ~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~-----~~-----egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~ 203 (319)
T PLN03025 136 CNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVV-----EA-----EKVPYVPEGLEAIIFT--ADGDMRQALNNLQA 203 (319)
T ss_pred eCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 999999999999999999999999999887776543 22 4667889999999976 46778888777763
Q ss_pred HHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 584 VTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 584 i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
.. .+. -.|+.+.+.+..|.+
T Consensus 204 ~~--------~~~---~~i~~~~v~~~~~~~ 223 (319)
T PLN03025 204 TH--------SGF---GFVNQENVFKVCDQP 223 (319)
T ss_pred HH--------hcC---CCCCHHHHHHHcCCC
Confidence 22 111 147777777766644
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.64 E-value=2.5e-15 Score=173.06 Aligned_cols=220 Identities=20% Similarity=0.326 Sum_probs=144.9
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA 433 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~ 433 (1230)
+|++|++++++.|..++......+ ..+..++|+||||||||+||++||+.++.++..++......
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~-------------- 68 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK-------------- 68 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--------------
Confidence 579999999999999886443332 34556889999999999999999999998876554322111
Q ss_pred CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhc---cCccccCCceEEEEecCCCCCC
Q psy8969 434 MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHY---LDVPVDLSRVLFICTANVIDTI 510 (1230)
Q Consensus 434 ~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~---~~~~~d~s~v~~I~TaN~~~~I 510 (1230)
++.+...+.. .....||||||||.+.. +....|+.+++..+..-+++.- -.+..++..+.+|++||....|
T Consensus 69 -~~~l~~~l~~-~~~~~vl~iDEi~~l~~----~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 69 -PGDLAAILTN-LEEGDVLFIDEIHRLSP----AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGML 142 (305)
T ss_pred -chhHHHHHHh-cccCCEEEEehHhhhCH----HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcccc
Confidence 1223333322 22457999999999854 3445666666543322111110 0122345568899999999999
Q ss_pred CHhhhcccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy8969 511 PEPLRDRME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVA 589 (1230)
Q Consensus 511 ~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~ 589 (1230)
+++|++||. ++.+..|+.+|...++.+..- . ..+.++++++..|++. + ++..|.+.+.+..+...+.
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~-----~-----~~~~~~~~al~~ia~~-~-~G~pR~~~~ll~~~~~~a~ 210 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAG-----L-----LNVEIEPEAALEIARR-S-RGTPRIANRLLRRVRDFAQ 210 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHH-----H-----hCCCcCHHHHHHHHHH-h-CCCcchHHHHHHHHHHHHH
Confidence 999999996 468999999999888876441 1 3567899999998875 2 3345666666665443211
Q ss_pred HHHhhcCCCceEechhhhhhhcC
Q psy8969 590 LTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 590 ~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
. .+ . -.|+.+.+.+.+.
T Consensus 211 ~---~~--~-~~it~~~v~~~l~ 227 (305)
T TIGR00635 211 V---RG--Q-KIINRDIALKALE 227 (305)
T ss_pred H---cC--C-CCcCHHHHHHHHH
Confidence 1 11 1 2366666666554
No 81
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.1e-15 Score=182.89 Aligned_cols=212 Identities=21% Similarity=0.289 Sum_probs=145.5
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE-------------EEecCCcc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF-------------RFSVGGMS 418 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~-------------~~~~~~~~ 418 (1230)
--+|++|++.+++.|..++.. ...+..+||+|||||||||+|+++|+.++...- .+..|...
T Consensus 13 tFddVIGQe~vv~~L~~aI~~-----grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALER-----GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFI 87 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCC
Confidence 346899999999999888852 223467899999999999999999999985310 01111111
Q ss_pred hhHHHhhccccccccCchhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccc
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPV 493 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~ 493 (1230)
|..++.+..+.-+ ..|++.+..+ .....|+||||+|.+.. ...++||+.|+..
T Consensus 88 DviEIDAAs~~~V----ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~----~A~NALLKtLEEP-------------- 145 (702)
T PRK14960 88 DLIEIDAASRTKV----EDTRELLDNVPYAPTQGRFKVYLIDEVHMLST----HSFNALLKTLEEP-------------- 145 (702)
T ss_pred ceEEecccccCCH----HHHHHHHHHHhhhhhcCCcEEEEEechHhcCH----HHHHHHHHHHhcC--------------
Confidence 2222221111111 1222222221 12345999999999854 3567788877531
Q ss_pred cCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhh
Q psy8969 494 DLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESG 573 (1230)
Q Consensus 494 d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~g 573 (1230)
-.++.||++||....|++++++||.++.|..++.++....+.+.+ .+ +.+.++++++..|++. .+++
T Consensus 146 -P~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il-----~k-----EgI~id~eAL~~IA~~--S~Gd 212 (702)
T PRK14960 146 -PEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAIL-----EK-----EQIAADQDAIWQIAES--AQGS 212 (702)
T ss_pred -CCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCC
Confidence 146788988899999999999999999999999999877776644 22 4578899999999866 4678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 574 VRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 574 vR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
+|.+.+.++.++. + +. -.|+.+++.+.+|.
T Consensus 213 LRdALnLLDQaIa---y----g~---g~IT~edV~~lLG~ 242 (702)
T PRK14960 213 LRDALSLTDQAIA---Y----GQ---GAVHHQDVKEMLGL 242 (702)
T ss_pred HHHHHHHHHHHHH---h----cC---CCcCHHHHHHHhcc
Confidence 9998888876552 1 11 14888888888883
No 82
>KOG0745|consensus
Probab=99.64 E-value=2.6e-15 Score=169.78 Aligned_cols=219 Identities=23% Similarity=0.344 Sum_probs=164.2
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHh------hcCCCCEEEEe
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKK------TKTENPLVLID 455 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~------~~~~~pvillD 455 (1230)
..+||+||.|+|||.||+.||+.|+.||.--++-.++. -.|||+---.|++-+.. .+....|||||
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQ--------AGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflD 298 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQ--------AGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLD 298 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhh--------cccccccHHHHHHHHHHHccCCHHHHhcCeEEEe
Confidence 35889999999999999999999999998777655544 25999876666665433 23456899999
Q ss_pred cccccCCCC---------CC-ChhhHHHhhcCh------hhhhhhhhhccCccccCCceEEEEecCC-------------
Q psy8969 456 EVDKIGKGY---------SG-DPASALLEMLDP------EQNANFLDHYLDVPVDLSRVLFICTANV------------- 506 (1230)
Q Consensus 456 EIDk~~~~~---------~~-~~~~all~~ld~------~q~~~f~d~~~~~~~d~s~v~~I~TaN~------------- 506 (1230)
|||||++.. .| ....+||.+|+. +.+..-...-..+.+|.++|+|||..-.
T Consensus 299 EvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d 378 (564)
T KOG0745|consen 299 EVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDD 378 (564)
T ss_pred hhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcc
Confidence 999997322 22 235799999974 2222222233356799999999972110
Q ss_pred -------------------------------------------CCCCCHhhhccccee-ecCCCCHHHHHHHH---HHhh
Q psy8969 507 -------------------------------------------IDTIPEPLRDRMEMI-DVSGYVAEEKVAIA---AQYL 539 (1230)
Q Consensus 507 -------------------------------------------~~~I~~~L~~R~~~i-~~~~~~~~e~~~i~---~~~l 539 (1230)
...+.|.|.-||.|| .|..++....+.|+ ++.|
T Consensus 379 ~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL 458 (564)
T KOG0745|consen 379 KSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNAL 458 (564)
T ss_pred hhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhH
Confidence 013456777799975 88888888888887 6778
Q ss_pred cchhHHhcCCCCCCcccCHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhh
Q psy8969 540 IPQAMKESGLSPEQITLEPSAIQVLIKN-YCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLS 608 (1230)
Q Consensus 540 ~~~~~~~~gl~~~~i~~~~~~~~~li~~-~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~ 608 (1230)
+++.-+-.+++.-++.++++|++.|.+. ..|.-|+|.|+.++|+++-.+.+++....-..+.|+.+.+.
T Consensus 459 ~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevPGSdI~~V~Vdee~v~ 528 (564)
T KOG0745|consen 459 GKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVPGSDIKAVLVDEEAVK 528 (564)
T ss_pred HHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCCCCceEEEEecHHHhc
Confidence 8877777888888999999999998754 66899999999999999999888877555456778877765
No 83
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=3.7e-15 Score=173.37 Aligned_cols=221 Identities=19% Similarity=0.291 Sum_probs=144.3
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYV 431 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~ 431 (1230)
--++++|++++++.+..++......+ ..+..++|+||||||||++|+++|+.++..+..++......
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------------ 89 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------------ 89 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------------
Confidence 34679999999999998885443333 34567899999999999999999999999877655322111
Q ss_pred ccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhc---cCccccCCceEEEEecCCCC
Q psy8969 432 GAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHY---LDVPVDLSRVLFICTANVID 508 (1230)
Q Consensus 432 g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~---~~~~~d~s~v~~I~TaN~~~ 508 (1230)
++.+...+.. -....||||||||.+.. +....|+..++.....-.++.- ..+..++..+.+|++||+..
T Consensus 90 ---~~~l~~~l~~-l~~~~vl~IDEi~~l~~----~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~ 161 (328)
T PRK00080 90 ---PGDLAAILTN-LEEGDVLFIDEIHRLSP----VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG 161 (328)
T ss_pred ---hHHHHHHHHh-cccCCEEEEecHhhcch----HHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc
Confidence 1223333322 23467999999999853 2334444443321110001100 01123455688999999999
Q ss_pred CCCHhhhcccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 509 TIPEPLRDRME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 509 ~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
.++++|++||. ++.+..|+.+|...|+.+..- . ..+.++++++..|++.. ++..|.+.+.+..+...
T Consensus 162 ~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~-----~-----~~~~~~~~~~~~ia~~~--~G~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 162 LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR-----I-----LGVEIDEEGALEIARRS--RGTPRIANRLLRRVRDF 229 (328)
T ss_pred cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH-----H-----cCCCcCHHHHHHHHHHc--CCCchHHHHHHHHHHHH
Confidence 99999999996 589999999999988876542 2 35678999999988652 34457776666654432
Q ss_pred HHHHHhhcCCCceEechhhhhhhc
Q psy8969 588 VALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 588 ~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
... .+ .-.|+.+.+.+.+
T Consensus 230 a~~---~~---~~~I~~~~v~~~l 247 (328)
T PRK00080 230 AQV---KG---DGVITKEIADKAL 247 (328)
T ss_pred HHH---cC---CCCCCHHHHHHHH
Confidence 211 11 1146666666555
No 84
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.63 E-value=1.5e-16 Score=158.97 Aligned_cols=117 Identities=30% Similarity=0.460 Sum_probs=90.0
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCC--CEEEEecccccC
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTEN--PLVLIDEVDKIG 461 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~--pvillDEIDk~~ 461 (1230)
|||+||||||||++|+++|+.++.+|+.++.+.+.+ .+.+.....+...|..+...+ .||+|||||.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS---------SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF 71 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT---------SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccc---------ccccccccccccccccccccccceeeeeccchhcc
Confidence 689999999999999999999999999999765543 366777788888888877665 688899999997
Q ss_pred CCCC--CC-----hhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhh-ccccee
Q psy8969 462 KGYS--GD-----PASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLR-DRMEMI 521 (1230)
Q Consensus 462 ~~~~--~~-----~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~-~R~~~i 521 (1230)
.... .+ ..+.|+..++... ...++++||+|||..+.|+++|+ +||+..
T Consensus 72 ~~~~~~~~~~~~~~~~~L~~~l~~~~------------~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~ 127 (132)
T PF00004_consen 72 PKSQPSSSSFEQRLLNQLLSLLDNPS------------SKNSRVIVIATTNSPDKIDPALLRSRFDRR 127 (132)
T ss_dssp HHCSTSSSHHHHHHHHHHHHHHHTTT------------TTSSSEEEEEEESSGGGSCHHHHSTTSEEE
T ss_pred cccccccccccccccceeeecccccc------------cccccceeEEeeCChhhCCHhHHhCCCcEE
Confidence 5431 11 1233443333221 22467999999999999999999 999864
No 85
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.63 E-value=4.3e-15 Score=177.99 Aligned_cols=206 Identities=21% Similarity=0.333 Sum_probs=141.0
Q ss_pred ccccChHHHHHH---HHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccc
Q psy8969 354 DDHYGMEDVKKR---ILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTY 430 (1230)
Q Consensus 354 ~d~~G~~~vK~~---i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~ 430 (1230)
+|++|++++... |..++.. ...+.++|+||||||||++|++||+.++.+|+.++..... ..+++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~-~~~ir------ 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG-VKDLR------ 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-HHHHH------
Confidence 479999998554 7776632 2345788999999999999999999999999999864321 11111
Q ss_pred cccCchhHHHHHHh--hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe--cCC
Q psy8969 431 VGAMPGKVIQCMKK--TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT--ANV 506 (1230)
Q Consensus 431 ~g~~~g~i~~~~~~--~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T--aN~ 506 (1230)
.++..+.. ......||||||||++.. ...++|+..++. ..+++|++ .|.
T Consensus 79 ------~ii~~~~~~~~~g~~~vL~IDEi~~l~~----~~q~~LL~~le~-----------------~~iilI~att~n~ 131 (413)
T PRK13342 79 ------EVIEEARQRRSAGRRTILFIDEIHRFNK----AQQDALLPHVED-----------------GTITLIGATTENP 131 (413)
T ss_pred ------HHHHHHHHhhhcCCceEEEEechhhhCH----HHHHHHHHHhhc-----------------CcEEEEEeCCCCh
Confidence 11111111 112456999999998743 234455554432 34556643 466
Q ss_pred CCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8969 507 IDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 507 ~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r 586 (1230)
...++++|++||.++.+.+++.++...++.+.+... ..|+ +.++++++..+++. + .+++|.+...++.++.
T Consensus 132 ~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~---~~~~----i~i~~~al~~l~~~-s-~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 132 SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK---ERGL----VELDDEALDALARL-A-NGDARRALNLLELAAL 202 (413)
T ss_pred hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh---hcCC----CCCCHHHHHHHHHh-C-CCCHHHHHHHHHHHHH
Confidence 778999999999999999999999998888765321 1132 57889998888754 4 6788998888887654
Q ss_pred HHHHHHhhcCCCceEechhhhhhhcCCCccccc
Q psy8969 587 KVALTIVKKESDKVTVTNDNLSDFVGKPIFSHD 619 (1230)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 619 (1230)
. ...|+.+.+.++++...+.++
T Consensus 203 ~-----------~~~It~~~v~~~~~~~~~~~d 224 (413)
T PRK13342 203 G-----------VDSITLELLEEALQKRAARYD 224 (413)
T ss_pred c-----------cCCCCHHHHHHHHhhhhhccC
Confidence 2 124788888888876544443
No 86
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.5e-15 Score=182.83 Aligned_cols=214 Identities=22% Similarity=0.298 Sum_probs=144.7
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE-------------EEecCCcchh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF-------------RFSVGGMSDV 420 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~-------------~~~~~~~~d~ 420 (1230)
+|++|++.+++.|..++.... .+..+||+|||||||||+|+++|+.++..-- .+..|...|.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 579999999999999885432 2446899999999999999999999975310 1111111222
Q ss_pred HHHhhccccccccCchhHHHHHHhhc--CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCce
Q psy8969 421 AEIKGHRRTYVGAMPGKVIQCMKKTK--TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRV 498 (1230)
Q Consensus 421 ~~i~g~~~~~~g~~~g~i~~~~~~~~--~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v 498 (1230)
.++.+..+..+... ..++..+.... ....|+||||+|.+.. +..++||..|+.. -.++
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~p~~~~~kV~iIDE~~~ls~----~a~naLLk~LEep---------------p~~~ 150 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYAPTKGRFKVYLIDEVHMLSG----HSFNALLKTLEEP---------------PSHV 150 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhccccCCcEEEEEEChHhcCH----HHHHHHHHHHhcc---------------CCCe
Confidence 22222222222211 11122221111 2346999999999854 4577888877641 2468
Q ss_pred EEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHH
Q psy8969 499 LFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQ 578 (1230)
Q Consensus 499 ~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~ 578 (1230)
.||++||.+..|++++++||.++++..++.++....+...+ ++ +.+.++++++..|++. .++++|.+.
T Consensus 151 ~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il-----~~-----egi~~~~~al~~ia~~--s~GslR~al 218 (509)
T PRK14958 151 KFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLL-----KE-----ENVEFENAALDLLARA--ANGSVRDAL 218 (509)
T ss_pred EEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCcHHHHH
Confidence 89988899999999999999999999999988766655433 23 3567889999888866 367899998
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 579 KHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 579 ~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
+.+++++. + +. -.|+.++|.+.+|..
T Consensus 219 ~lLdq~ia---~----~~---~~It~~~V~~~lg~~ 244 (509)
T PRK14958 219 SLLDQSIA---Y----GN---GKVLIADVKTMLGTI 244 (509)
T ss_pred HHHHHHHh---c----CC---CCcCHHHHHHHHCCC
Confidence 88877542 1 11 148888888888743
No 87
>PRK04195 replication factor C large subunit; Provisional
Probab=99.62 E-value=5.5e-15 Score=180.34 Aligned_cols=191 Identities=26% Similarity=0.348 Sum_probs=134.0
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA 433 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~ 433 (1230)
+|++|++++++.+.+|+.... .+. .++.+||+||||||||++|++||+.++.+++.++.++......+.. +++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~-~g~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~----~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL-KGK-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER----VAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh-cCC-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH----HHHH
Confidence 469999999999999985433 332 3678999999999999999999999999999999876554322221 1111
Q ss_pred CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCH-
Q psy8969 434 MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPE- 512 (1230)
Q Consensus 434 ~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~- 512 (1230)
... .....+....||||||+|.+..........+|+.+++. .+..||+++|.+..++.
T Consensus 88 ~~~----~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-----------------~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 88 AAT----SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK-----------------AKQPIILTANDPYDPSLR 146 (482)
T ss_pred hhc----cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc-----------------CCCCEEEeccCccccchh
Confidence 000 00000123569999999998653222335666666542 24457888899888887
Q ss_pred hhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8969 513 PLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEK 583 (1230)
Q Consensus 513 ~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~ 583 (1230)
+|++|+..|.+..++.++...++++.+ .. +.+.++++++..|++.. .+.+|.+-..++.
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~-----~~-----egi~i~~eaL~~Ia~~s--~GDlR~ain~Lq~ 205 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRIC-----RK-----EGIECDDEALKEIAERS--GGDLRSAINDLQA 205 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 999999999999999998888776654 23 34568899999998763 4566665544443
No 88
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.61 E-value=4.1e-15 Score=186.71 Aligned_cols=217 Identities=21% Similarity=0.331 Sum_probs=145.8
Q ss_pred ccccChHHHHH---HHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecC--CcchhHHHhhccc
Q psy8969 354 DDHYGMEDVKK---RILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVG--GMSDVAEIKGHRR 428 (1230)
Q Consensus 354 ~d~~G~~~vK~---~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~--~~~d~~~i~g~~~ 428 (1230)
+|++|++.+.. .+..++.. ...+.++|+||||||||++|++||+.++.+|+.++.. ++.+..++
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~----- 96 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAE----- 96 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHH-----
Confidence 46889999874 44455431 2345789999999999999999999999999888753 22221111
Q ss_pred cccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEE--ecCC
Q psy8969 429 TYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC--TANV 506 (1230)
Q Consensus 429 ~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~--TaN~ 506 (1230)
+. .+...+.. .....||||||||.++. +...+|+..++ ...+++|+ |.|+
T Consensus 97 --i~----~a~~~l~~-~~~~~IL~IDEIh~Ln~----~qQdaLL~~lE-----------------~g~IiLI~aTTenp 148 (725)
T PRK13341 97 --VD----RAKERLER-HGKRTILFIDEVHRFNK----AQQDALLPWVE-----------------NGTITLIGATTENP 148 (725)
T ss_pred --HH----HHHHHhhh-cCCceEEEEeChhhCCH----HHHHHHHHHhc-----------------CceEEEEEecCCCh
Confidence 00 01111111 12345899999998753 23455554433 13466664 3467
Q ss_pred CCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8969 507 IDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 507 ~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r 586 (1230)
...|+++|++|+.++.+.+++.++...|+++++-. . ..++..+.+.++++++..|++. + .+++|.+...++.++.
T Consensus 149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~-~--~~~~g~~~v~I~deaL~~La~~-s-~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQD-K--ERGYGDRKVDLEPEAEKHLVDV-A-NGDARSLLNALELAVE 223 (725)
T ss_pred HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHH-H--HhhcCCcccCCCHHHHHHHHHh-C-CCCHHHHHHHHHHHHH
Confidence 77899999999999999999999999999887632 1 2344456789999999999865 4 7889999999988663
Q ss_pred HHHHHHhhcCCCceEechhhhhhhcCCCcccc
Q psy8969 587 KVALTIVKKESDKVTVTNDNLSDFVGKPIFSH 618 (1230)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 618 (1230)
.. .......+.|+.+.+++.++...+.+
T Consensus 224 ~~----~~~~~~~i~It~~~~~e~l~~~~~~y 251 (725)
T PRK13341 224 ST----PPDEDGLIDITLAIAEESIQQRAVLY 251 (725)
T ss_pred hc----ccCCCCceeccHHHHHHHHHHhhhhc
Confidence 21 11122335578888887776543333
No 89
>KOG0989|consensus
Probab=99.61 E-value=2.5e-15 Score=164.67 Aligned_cols=191 Identities=25% Similarity=0.307 Sum_probs=129.8
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe-EEEec--CCcchhHHHhhccccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-FRFSV--GGMSDVAEIKGHRRTY 430 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~-~~~~~--~~~~d~~~i~g~~~~~ 430 (1230)
+|+.|++.|...+...+.. .-.+.+||||||||||||.|+++|++|+-+- +.-.+ ...+|++-|. .
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-----v 104 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-----V 104 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-----c
Confidence 5789999999988887743 3356799999999999999999999998632 11100 0112211111 1
Q ss_pred cccCchhHHHHHHhh----c--C-CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 431 VGAMPGKVIQCMKKT----K--T-ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 431 ~g~~~g~i~~~~~~~----~--~-~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
+++.-....+..... + + ...||||||.|.+.+ |..+||+.++|.. ...+.||+-
T Consensus 105 vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts----daq~aLrr~mE~~---------------s~~trFiLI 165 (346)
T KOG0989|consen 105 VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS----DAQAALRRTMEDF---------------SRTTRFILI 165 (346)
T ss_pred hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH----HHHHHHHHHHhcc---------------ccceEEEEE
Confidence 111100111111100 0 0 113999999999854 5678888888752 246788888
Q ss_pred cCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8969 504 ANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEK 583 (1230)
Q Consensus 504 aN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~ 583 (1230)
+|+++.|++||.+||.-+.|..+.+++.+..++..- ..+.+.++++++..|++. .++.+|..+-.++.
T Consensus 166 cnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia----------~~E~v~~d~~al~~I~~~--S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 166 CNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIA----------SKEGVDIDDDALKLIAKI--SDGDLRRAITTLQS 233 (346)
T ss_pred cCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHH----------HHhCCCCCHHHHHHHHHH--cCCcHHHHHHHHHH
Confidence 999999999999999999999998888766654422 245778899999998875 67778877666666
Q ss_pred HHH
Q psy8969 584 VTR 586 (1230)
Q Consensus 584 i~r 586 (1230)
+.+
T Consensus 234 ls~ 236 (346)
T KOG0989|consen 234 LSL 236 (346)
T ss_pred hhc
Confidence 443
No 90
>KOG0730|consensus
Probab=99.59 E-value=3.9e-15 Score=177.07 Aligned_cols=199 Identities=21% Similarity=0.347 Sum_probs=147.5
Q ss_pred ccccChHHHHHHHHHHHHHhhh-------cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQL-------KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGH 426 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~-------~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~ 426 (1230)
.+++|+...-..|.+.+..... -+...|+++|+|||||||||.+++++|+..++.++.++...+..
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~------- 256 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELIS------- 256 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHH-------
Confidence 7899998888888777654322 26678899999999999999999999999999998887644332
Q ss_pred cccccccCchhHHHHHHhhcCCC-C-EEEEecccccCCCCCCCh------hhHHHhhcChhhhhhhhhhccCccccCCce
Q psy8969 427 RRTYVGAMPGKVIQCMKKTKTEN-P-LVLIDEVDKIGKGYSGDP------ASALLEMLDPEQNANFLDHYLDVPVDLSRV 498 (1230)
Q Consensus 427 ~~~~~g~~~g~i~~~~~~~~~~~-p-villDEIDk~~~~~~~~~------~~all~~ld~~q~~~f~d~~~~~~~d~s~v 498 (1230)
+|.|+....++.+|..+.... | +|||||||.+...+.+.. .+.|+.++|.. -..+++
T Consensus 257 --k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~-------------~~~~~v 321 (693)
T KOG0730|consen 257 --KFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGL-------------KPDAKV 321 (693)
T ss_pred --hcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhC-------------cCcCcE
Confidence 688999999999999998877 6 888999999986543322 24455555431 134799
Q ss_pred EEEEecCCCCCCCHhhhc-ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCC----CCCc-ccCHHHHHHHHHHhhhh
Q psy8969 499 LFICTANVIDTIPEPLRD-RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLS----PEQI-TLEPSAIQVLIKNYCRE 571 (1230)
Q Consensus 499 ~~I~TaN~~~~I~~~L~~-R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~----~~~i-~~~~~~~~~li~~~~~e 571 (1230)
++|+|+|+++.|+++|++ ||+ .+.+.-++..++..|++.+.. ..++. ..++ ..+-+...+.+...|++
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k-----~~~~~~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTK-----KMNLLSDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred EEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHH-----hcCCcchhhHHHHHHHccchhHHHHHHHHHH
Confidence 999999999999999997 998 477777888888888876542 22222 1111 12233444455667788
Q ss_pred hhHHHHHH
Q psy8969 572 SGVRNLQK 579 (1230)
Q Consensus 572 ~gvR~l~~ 579 (1230)
+....+++
T Consensus 397 a~~~~~r~ 404 (693)
T KOG0730|consen 397 ASLQATRR 404 (693)
T ss_pred HHHHHhhh
Confidence 87777777
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.9e-15 Score=183.47 Aligned_cols=212 Identities=23% Similarity=0.329 Sum_probs=146.3
Q ss_pred cccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-------------EecCCcch
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-------------FSVGGMSD 419 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-------------~~~~~~~d 419 (1230)
-+|++|++.+++.|..++... ..+..+||+||||||||++|+++|+.|+.+-.. +..+...|
T Consensus 15 FddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D 89 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD 89 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc
Confidence 368999999999999988632 234578999999999999999999998754210 11111112
Q ss_pred hHHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcccc
Q psy8969 420 VAEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 420 ~~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
..++.+.....+ ..|++.+..+. ....||||||+|++.. ...++||+.|+. .
T Consensus 90 vlEidaAs~~gV----d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~----~A~NALLKtLEE---------------P 146 (709)
T PRK08691 90 LLEIDAASNTGI----DNIREVLENAQYAPTAGKYKVYIIDEVHMLSK----SAFNAMLKTLEE---------------P 146 (709)
T ss_pred eEEEeccccCCH----HHHHHHHHHHHhhhhhCCcEEEEEECccccCH----HHHHHHHHHHHh---------------C
Confidence 111211111111 23334433221 2335999999998753 345677777753 1
Q ss_pred CCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhH
Q psy8969 495 LSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 495 ~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gv 574 (1230)
-+++.||++||....|++.+++||..|.|..++.++...++.+.+ .. +.+.++++++..|++. .++++
T Consensus 147 p~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il-----~k-----Egi~id~eAL~~Ia~~--A~Gsl 214 (709)
T PRK08691 147 PEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVL-----DS-----EKIAYEPPALQLLGRA--AAGSM 214 (709)
T ss_pred CCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHH-----HH-----cCCCcCHHHHHHHHHH--hCCCH
Confidence 246889999999999999999999999999999999887776543 23 3577899999999866 36889
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 575 RNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 575 R~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
|.+.+.+++++.. +. -.|+.+.|...+|..
T Consensus 215 RdAlnLLDqaia~-------g~---g~It~e~V~~lLG~~ 244 (709)
T PRK08691 215 RDALSLLDQAIAL-------GS---GKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHHHHh-------cC---CCcCHHHHHHHHccc
Confidence 9998888776532 11 147888888887754
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.4e-14 Score=174.01 Aligned_cols=210 Identities=20% Similarity=0.299 Sum_probs=143.2
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-------------EecCCcchh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-------------FSVGGMSDV 420 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-------------~~~~~~~d~ 420 (1230)
+|++|++.+++.+...+... .-+..+||+|||||||||+|+++|+.++...-. +.-+.-.|.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 67999999999888776532 234579999999999999999999988532100 000001111
Q ss_pred HHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 421 AEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 421 ~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
.++.+.+.+- -..|++.+..+. ....|+||||+|.+.. ...++||+.|+.. -
T Consensus 88 ~eidaas~~~----vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~----~A~NaLLK~LEeP---------------p 144 (491)
T PRK14964 88 IEIDAASNTS----VDDIKVILENSCYLPISSKFKVYIIDEVHMLSN----SAFNALLKTLEEP---------------A 144 (491)
T ss_pred EEEecccCCC----HHHHHHHHHHHHhccccCCceEEEEeChHhCCH----HHHHHHHHHHhCC---------------C
Confidence 1111111110 112333332222 2346999999998853 3467787777631 2
Q ss_pred CceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHH
Q psy8969 496 SRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVR 575 (1230)
Q Consensus 496 s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR 575 (1230)
..+.||++|+..+.|++.+++||.++++..++.++...++.+.+ + .+.+.++++++..|++. .++++|
T Consensus 145 ~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia-----~-----~Egi~i~~eAL~lIa~~--s~GslR 212 (491)
T PRK14964 145 PHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIA-----K-----KENIEHDEESLKLIAEN--SSGSMR 212 (491)
T ss_pred CCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHH-----H-----HcCCCCCHHHHHHHHHH--cCCCHH
Confidence 46889988899999999999999999999999999877766543 2 24678899999988876 368899
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 576 NLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 576 ~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
.+...+++++... + . .||.+.+.+.+|.
T Consensus 213 ~alslLdqli~y~------~--~--~It~e~V~~llg~ 240 (491)
T PRK14964 213 NALFLLEQAAIYS------N--N--KISEKSVRDLLGC 240 (491)
T ss_pred HHHHHHHHHHHhc------C--C--CCCHHHHHHHHcc
Confidence 9888888866421 1 1 4888888888874
No 93
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=1.5e-14 Score=167.32 Aligned_cols=190 Identities=22% Similarity=0.355 Sum_probs=128.6
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA 433 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~ 433 (1230)
+|+.|++++++.+..++.. + ..+..++|+||||+|||++|+++|+.++.+++.++.+. .....++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~----~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~~~~i~~-------- 86 (316)
T PHA02544 21 DECILPAADKETFKSIVKK----G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CRIDFVRN-------- 86 (316)
T ss_pred HHhcCcHHHHHHHHHHHhc----C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-ccHHHHHH--------
Confidence 5789999999999998852 2 23456777999999999999999999999998888654 11111111
Q ss_pred CchhHHHHHHhh--cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCC
Q psy8969 434 MPGKVIQCMKKT--KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIP 511 (1230)
Q Consensus 434 ~~g~i~~~~~~~--~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~ 511 (1230)
.+....... .....||||||+|.++.. +...+|...++. + .+++.||+|+|..+.++
T Consensus 87 ---~l~~~~~~~~~~~~~~vliiDe~d~l~~~---~~~~~L~~~le~---------~------~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 87 ---RLTRFASTVSLTGGGKVIIIDEFDRLGLA---DAQRHLRSFMEA---------Y------SKNCSFIITANNKNGII 145 (316)
T ss_pred ---HHHHHHHhhcccCCCeEEEEECcccccCH---HHHHHHHHHHHh---------c------CCCceEEEEcCChhhch
Confidence 111111111 123569999999987321 122333333321 1 14678999999999999
Q ss_pred HhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8969 512 EPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEK 583 (1230)
Q Consensus 512 ~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~ 583 (1230)
++|++||.++.+..++.++...++...+ .+.. .-+..+.+.++++++..+++... .++|.+...++.
T Consensus 146 ~~l~sR~~~i~~~~p~~~~~~~il~~~~-~~~~--~~~~~~~~~i~~~al~~l~~~~~--~d~r~~l~~l~~ 212 (316)
T PHA02544 146 EPLRSRCRVIDFGVPTKEEQIEMMKQMI-VRCK--GILEAEGVEVDMKVLAALVKKNF--PDFRRTINELQR 212 (316)
T ss_pred HHHHhhceEEEeCCCCHHHHHHHHHHHH-HHHH--HHHHhcCCCCCHHHHHHHHHhcC--CCHHHHHHHHHH
Confidence 9999999999999999999888776633 2221 12334567789999999987643 456666555543
No 94
>KOG0732|consensus
Probab=99.58 E-value=4.1e-15 Score=186.12 Aligned_cols=166 Identities=24% Similarity=0.351 Sum_probs=125.0
Q ss_pred ccccChHHHHHHHHHHHHHhhhc-------CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLK-------GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGH 426 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~-------~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~ 426 (1230)
++++||+.++..+.|.+....+. +..+|+++||+||||||||+.|+++|.++....-+++.- +++-+..
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisff-mrkgaD~--- 340 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFF-MRKGADC--- 340 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchh-hhcCchh---
Confidence 78999999999998887654443 467889999999999999999999999997766555531 1111111
Q ss_pred cccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC-------CCChhhHHHhhcChhhhhhhhhhccCccccCCce
Q psy8969 427 RRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY-------SGDPASALLEMLDPEQNANFLDHYLDVPVDLSRV 498 (1230)
Q Consensus 427 ~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~-------~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v 498 (1230)
-.+|||+........|..|+...| |||+||||.++.-+ +....+.||-+||.-- ..+.|
T Consensus 341 lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGld-------------sRgqV 407 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD-------------SRGQV 407 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCC-------------CCCce
Confidence 237999999999999999999988 77799999887533 2344577777777521 24789
Q ss_pred EEEEecCCCCCCCHhhhc--ccce-eecCCCCHHHHHHHHH
Q psy8969 499 LFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 499 ~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e~~~i~~ 536 (1230)
++|.+||+++.|+|||++ ||+. +.++-+..+...+|+.
T Consensus 408 vvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~ 448 (1080)
T KOG0732|consen 408 VVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILD 448 (1080)
T ss_pred EEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHH
Confidence 999999999999999987 6764 4555454555545543
No 95
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.5e-14 Score=178.25 Aligned_cols=196 Identities=22% Similarity=0.308 Sum_probs=131.2
Q ss_pred cccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE-EEe-cCCc-----------ch
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF-RFS-VGGM-----------SD 419 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~-~~~-~~~~-----------~d 419 (1230)
-+|++|++.+++.|..++.... -+..+||+|||||||||+|+++|+.|+.... .-. ++-. .|
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 3679999999999888875322 2445789999999999999999999986411 000 1100 11
Q ss_pred hHHHhhccccccccCchhHHHHHHh--hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 420 VAEIKGHRRTYVGAMPGKVIQCMKK--TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 420 ~~~i~g~~~~~~g~~~g~i~~~~~~--~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
..++.+..+.-+... ..++..+.. ......||||||+|+|.. +..++||..|+.. -.+
T Consensus 90 viEidAas~~kVDdI-ReLie~v~~~P~~gk~KViIIDEAh~LT~----eAqNALLKtLEEP---------------P~~ 149 (944)
T PRK14949 90 LIEVDAASRTKVDDT-RELLDNVQYRPSRGRFKVYLIDEVHMLSR----SSFNALLKTLEEP---------------PEH 149 (944)
T ss_pred EEEeccccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechHhcCH----HHHHHHHHHHhcc---------------CCC
Confidence 111111100000000 112222221 122346999999999853 4678888887641 246
Q ss_pred eEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHH
Q psy8969 498 VLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNL 577 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l 577 (1230)
+.||++||....|+++|++||.++.|.+++.++....+++.+ .. +.+.++++++..|++. ..+++|..
T Consensus 150 vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il-----~~-----EgI~~edeAL~lIA~~--S~Gd~R~A 217 (944)
T PRK14949 150 VKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL-----TQ-----EQLPFEAEALTLLAKA--ANGSMRDA 217 (944)
T ss_pred eEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHHHH
Confidence 888988999999999999999999999999999877765543 12 3578899999888855 56678887
Q ss_pred HHHHHHHH
Q psy8969 578 QKHIEKVT 585 (1230)
Q Consensus 578 ~~~i~~i~ 585 (1230)
...++..+
T Consensus 218 LnLLdQal 225 (944)
T PRK14949 218 LSLTDQAI 225 (944)
T ss_pred HHHHHHHH
Confidence 77776544
No 96
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=3.3e-14 Score=167.51 Aligned_cols=214 Identities=21% Similarity=0.260 Sum_probs=139.2
Q ss_pred hhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE--ecC-----------Cc
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF--SVG-----------GM 417 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~--~~~-----------~~ 417 (1230)
.--+|++|++.+++.+...+... .-+..++|+||||||||++|+++|+.++.+...- ..+ ..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLC 87 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34468999999999988877532 2345689999999999999999999997432100 000 00
Q ss_pred chhHHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcc
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVP 492 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~ 492 (1230)
.|..++.+..+..+ ..+.+.+.... ....||||||+|++.. ...++||..|+..
T Consensus 88 ~d~~~~~~~~~~~v----~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~----~a~naLLk~lEe~------------- 146 (363)
T PRK14961 88 LDLIEIDAASRTKV----EEMREILDNIYYSPSKSRFKVYLIDEVHMLSR----HSFNALLKTLEEP------------- 146 (363)
T ss_pred CceEEecccccCCH----HHHHHHHHHHhcCcccCCceEEEEEChhhcCH----HHHHHHHHHHhcC-------------
Confidence 11111111111111 12222222211 2245999999999843 3456777776531
Q ss_pred ccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhh
Q psy8969 493 VDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRES 572 (1230)
Q Consensus 493 ~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~ 572 (1230)
..++.||++||..+.|+++|++|+.++.+.+++.+|...++.+.+ +.. .+.++++++..+++. .++
T Consensus 147 --~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~-----~~~-----g~~i~~~al~~ia~~--s~G 212 (363)
T PRK14961 147 --PQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYIL-----IKE-----SIDTDEYALKLIAYH--AHG 212 (363)
T ss_pred --CCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHH--cCC
Confidence 236778888888999999999999999999999999887776543 222 467888999888764 345
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 573 GVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 573 gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
++|.+.+.++.++.. + .-.|+.+++.+.+|..
T Consensus 213 ~~R~al~~l~~~~~~-------~---~~~It~~~v~~~l~~~ 244 (363)
T PRK14961 213 SMRDALNLLEHAINL-------G---KGNINIKNVTDMLGLL 244 (363)
T ss_pred CHHHHHHHHHHHHHh-------c---CCCCCHHHHHHHHCCC
Confidence 688887777765421 1 1247777787777643
No 97
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=1.5e-14 Score=183.54 Aligned_cols=217 Identities=19% Similarity=0.244 Sum_probs=141.7
Q ss_pred cccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-E-ecCCcchhHHHh-h---c
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-F-SVGGMSDVAEIK-G---H 426 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-~-~~~~~~d~~~i~-g---~ 426 (1230)
-+|++|++.+++.|..++... ..+..+||+||+|||||++|++||+.|+...-. . .++...+-..+. | +
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~ 88 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGS 88 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCC
Confidence 358999999999999888532 233568999999999999999999999742100 0 011110000000 0 0
Q ss_pred cc-ccc-ccCc---hhHHHHH-----HhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 427 RR-TYV-GAMP---GKVIQCM-----KKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 427 ~~-~~~-g~~~---g~i~~~~-----~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
.. ..+ ++.. ..|++.. ........||||||+|+|.. ...++||+.|+.- -.
T Consensus 89 ~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~----~a~NaLLK~LEEp---------------P~ 149 (824)
T PRK07764 89 LDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP----QGFNALLKIVEEP---------------PE 149 (824)
T ss_pred CcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH----HHHHHHHHHHhCC---------------CC
Confidence 00 000 0000 1111111 11223456999999999954 4567888887641 14
Q ss_pred ceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 497 RVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
+++||++||..+.|.+.|++|+.++.|..++.++...++.+.+ ++ +.+.++++++..|++. .++.+|.
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il-----~~-----EGv~id~eal~lLa~~--sgGdlR~ 217 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC-----AQ-----EGVPVEPGVLPLVIRA--GGGSVRD 217 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHHH
Confidence 7889988899999999999999999999999998877776543 33 3467888999888876 3567999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
+...|++++.. . + .-.||.+.+.+++|..
T Consensus 218 Al~eLEKLia~-----~-~---~~~IT~e~V~allg~~ 246 (824)
T PRK07764 218 SLSVLDQLLAG-----A-G---PEGVTYERAVALLGVT 246 (824)
T ss_pred HHHHHHHHHhh-----c-C---CCCCCHHHHHHHhcCC
Confidence 99888887721 0 1 1137777777777643
No 98
>PHA02244 ATPase-like protein
Probab=99.57 E-value=7.5e-14 Score=160.12 Aligned_cols=136 Identities=21% Similarity=0.249 Sum_probs=92.4
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEeccccc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKI 460 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~ 460 (1230)
+..|||+||||||||++|++||..+++||++++ +..+...+.|.......-.+|.+..++ ....+++|||||.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In--~l~d~~~L~G~i~~~g~~~dgpLl~A~----~~GgvLiLDEId~a 192 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN--AIMDEFELKGFIDANGKFHETPFYEAF----KKGGLFFIDEIDAS 192 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe--cChHHHhhcccccccccccchHHHHHh----hcCCEEEEeCcCcC
Confidence 456899999999999999999999999999987 344544554422111111334554443 35679999999987
Q ss_pred CCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-----------CCCCHhhhcccceeecCCCCHH
Q psy8969 461 GKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-----------DTIPEPLRDRMEMIDVSGYVAE 529 (1230)
Q Consensus 461 ~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-----------~~I~~~L~~R~~~i~~~~~~~~ 529 (1230)
. .+....|+.+|+.. +++..-+....-.++.+|+|+|.. ..++++++|||-+|++.-++.-
T Consensus 193 ~----p~vq~~L~~lLd~r----~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~~ 264 (383)
T PHA02244 193 I----PEALIIINSAIANK----FFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEKI 264 (383)
T ss_pred C----HHHHHHHHHHhccC----eEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcHH
Confidence 4 34566777777642 222211111112478999999983 6889999999999988665533
Q ss_pred H
Q psy8969 530 E 530 (1230)
Q Consensus 530 e 530 (1230)
|
T Consensus 265 E 265 (383)
T PHA02244 265 E 265 (383)
T ss_pred H
Confidence 3
No 99
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.57 E-value=3.1e-14 Score=160.37 Aligned_cols=162 Identities=20% Similarity=0.247 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccc------
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVG------ 432 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g------ 432 (1230)
+.++.++++.++. .+..+||.||||||||++|++||+.+|.+|+++++..-.+.+++.|....|..
T Consensus 7 ~~~l~~~~l~~l~--------~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~ 78 (262)
T TIGR02640 7 VKRVTSRALRYLK--------SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQ 78 (262)
T ss_pred HHHHHHHHHHHHh--------cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHH
Confidence 4566677777663 34678899999999999999999999999999987665555555443211100
Q ss_pred ---------------cCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhcc--Cccc-c
Q psy8969 433 ---------------AMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYL--DVPV-D 494 (1230)
Q Consensus 433 ---------------~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~--~~~~-d 494 (1230)
-.+|.+..++. ...+++|||||++. .+..+.|+++|+..+- .+.... +..+ -
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~l~~A~~----~g~~lllDEi~r~~----~~~q~~Ll~~Le~~~~--~i~~~~~~~~~i~~ 148 (262)
T TIGR02640 79 FIHNVVKLEDIVRQNWVDNRLTLAVR----EGFTLVYDEFTRSK----PETNNVLLSVFEEGVL--ELPGKRGTSRYVDV 148 (262)
T ss_pred HHHHhhhhhcccceeecCchHHHHHH----cCCEEEEcchhhCC----HHHHHHHHHHhcCCeE--EccCCCCCCceEec
Confidence 01445554443 34599999999974 4567899999985321 111100 0001 1
Q ss_pred CCceEEEEecCCC-----CCCCHhhhcccceeecCCCCHHHHHHHHHHh
Q psy8969 495 LSRVLFICTANVI-----DTIPEPLRDRMEMIDVSGYVAEEKVAIAAQY 538 (1230)
Q Consensus 495 ~s~v~~I~TaN~~-----~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~ 538 (1230)
-.++.+|+|+|+. ..++++|++||..+.+.-+..++..+|+.++
T Consensus 149 ~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 149 HPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred CCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh
Confidence 1367799999976 3679999999999999888888888888764
No 100
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.7e-14 Score=155.62 Aligned_cols=261 Identities=23% Similarity=0.388 Sum_probs=171.0
Q ss_pred HHHHhhhhcccccChHHHHHHHHHHHHHhhh--------cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCC
Q psy8969 345 LTQAAKILDDDHYGMEDVKKRILEFIAVSQL--------KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGG 416 (1230)
Q Consensus 345 ~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~--------~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~ 416 (1230)
....-..||+-++||+++|+.+--.|--+|. +...-|+.||..||.|||||.+||-||+..|.||+.+-..-
T Consensus 6 PreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATK 85 (444)
T COG1220 6 PREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATK 85 (444)
T ss_pred HHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeee
Confidence 3445567999999999999988666643332 34567889999999999999999999999999999876311
Q ss_pred --------------cchhHH-----------------------------Hhhcccccc----------------------
Q psy8969 417 --------------MSDVAE-----------------------------IKGHRRTYV---------------------- 431 (1230)
Q Consensus 417 --------------~~d~~~-----------------------------i~g~~~~~~---------------------- 431 (1230)
++|..+ +.+..+...
T Consensus 86 fTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~ 165 (444)
T COG1220 86 FTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLRE 165 (444)
T ss_pred eeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHc
Confidence 111111 001110000
Q ss_pred cc----------------------Cchh------HHHHHHhh--------------------------------------
Q psy8969 432 GA----------------------MPGK------VIQCMKKT-------------------------------------- 445 (1230)
Q Consensus 432 g~----------------------~~g~------i~~~~~~~-------------------------------------- 445 (1230)
|. +||. +...|...
T Consensus 166 GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi 245 (444)
T COG1220 166 GELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAI 245 (444)
T ss_pred CCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 00 2333 22222211
Q ss_pred --cCCCCEEEEecccccCCCC-CC--Chh-----hHHHhhcChhhhhhhhhhccCccccCCceEEEEecC----CCCCCC
Q psy8969 446 --KTENPLVLIDEVDKIGKGY-SG--DPA-----SALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN----VIDTIP 511 (1230)
Q Consensus 446 --~~~~pvillDEIDk~~~~~-~~--~~~-----~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN----~~~~I~ 511 (1230)
-.++.||||||||||+... .| |++ .-||-+++... ....| .++..++++||++.- .++.+.
T Consensus 246 ~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGst---V~TKy--G~VkTdHILFIasGAFh~sKPSDLi 320 (444)
T COG1220 246 DAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGST---VSTKY--GPVKTDHILFIASGAFHVAKPSDLI 320 (444)
T ss_pred HHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCce---eeccc--cccccceEEEEecCceecCChhhcC
Confidence 1135799999999997432 22 332 23444444322 12222 356778999997543 466788
Q ss_pred Hhhhcccce-eecCCCCHHHHHHHHHH---hhcch---hHHhcCCCCCCcccCHHHHHHHHHH------hhhhhhHHHHH
Q psy8969 512 EPLRDRMEM-IDVSGYVAEEKVAIAAQ---YLIPQ---AMKESGLSPEQITLEPSAIQVLIKN------YCRESGVRNLQ 578 (1230)
Q Consensus 512 ~~L~~R~~~-i~~~~~~~~e~~~i~~~---~l~~~---~~~~~gl~~~~i~~~~~~~~~li~~------~~~e~gvR~l~ 578 (1230)
|.|.-||.+ +++..++.++-..|+.. .|+.+ .++-.| -.+.++++++..|.+- -+..-|+|.|-
T Consensus 321 PELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~---v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLh 397 (444)
T COG1220 321 PELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEG---VELEFTDDAIKRIAEIAYQVNEKTENIGARRLH 397 (444)
T ss_pred hhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcC---eeEEecHHHHHHHHHHHHHhcccccchhHHHHH
Confidence 999999996 89999999988776632 22221 222223 3678999999988643 23567999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 579 KHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 579 ~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
..+++++..+...........++|+.+-+.+-||.
T Consensus 398 TvlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~ 432 (444)
T COG1220 398 TVLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGD 432 (444)
T ss_pred HHHHHHHHHhCccCCcCCCCeEEEcHHHHHHHHHH
Confidence 99999998887766666667899999988877763
No 101
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.6e-14 Score=175.94 Aligned_cols=212 Identities=18% Similarity=0.271 Sum_probs=143.6
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE------------------EEe
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF------------------RFS 413 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~------------------~~~ 413 (1230)
--+|++|++.+++.|..++.... -+..+||+||+|||||++|+++|+.|+..-- .|.
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~ 88 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDID 88 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHH
Confidence 34678899999999999886432 3456899999999999999999999974210 000
Q ss_pred cCCcchhHHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhc
Q psy8969 414 VGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHY 488 (1230)
Q Consensus 414 ~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~ 488 (1230)
.|...|..++.+....- -..|++.+..+. ....|+||||+|.++. +..++||..|+..
T Consensus 89 ~g~h~D~~eldaas~~~----Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~----~a~NaLLKtLEEP--------- 151 (618)
T PRK14951 89 SGRFVDYTELDAASNRG----VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN----TAFNAMLKTLEEP--------- 151 (618)
T ss_pred cCCCCceeecCcccccC----HHHHHHHHHHHHhCcccCCceEEEEEChhhCCH----HHHHHHHHhcccC---------
Confidence 11111221221111100 012333333221 1235999999999854 4577888777631
Q ss_pred cCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHh
Q psy8969 489 LDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568 (1230)
Q Consensus 489 ~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~ 568 (1230)
-.++.||++|+.+..|++.+++||.+|.|..++.++....+.+.+ .. +.+.++++++..|++.
T Consensus 152 ------P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~-----~~-----egi~ie~~AL~~La~~- 214 (618)
T PRK14951 152 ------PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVL-----AA-----ENVPAEPQALRLLARA- 214 (618)
T ss_pred ------CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH-
Confidence 247889988889999999999999999999999999877776543 22 3567889999999875
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 569 CRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 569 ~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
.++++|.+...+++++.. +. -.|+.+.|.+.+|.
T Consensus 215 -s~GslR~al~lLdq~ia~-------~~---~~It~~~V~~~Lg~ 248 (618)
T PRK14951 215 -ARGSMRDALSLTDQAIAF-------GS---GQLQEAAVRQMLGS 248 (618)
T ss_pred -cCCCHHHHHHHHHHHHHh-------cC---CCcCHHHHHHHHcC
Confidence 467888888877664421 11 14888888888874
No 102
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3.4e-14 Score=174.36 Aligned_cols=217 Identities=16% Similarity=0.237 Sum_probs=142.6
Q ss_pred cccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE--EecCCcchhHHHh----hc
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR--FSVGGMSDVAEIK----GH 426 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~--~~~~~~~d~~~i~----g~ 426 (1230)
-+|++|++.+++.|..++.. ...+..+||+|||||||||+|+++|+.++...-. -.++....-..+. ++
T Consensus 12 f~eivGq~~i~~~L~~~i~~-----~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~ 86 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDA-----GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGS 86 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCC
Confidence 46899999999999998852 2234468999999999999999999998843100 0011000000110 00
Q ss_pred ccc-cc-ccCc---hhHHHHHHh-----hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 427 RRT-YV-GAMP---GKVIQCMKK-----TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 427 ~~~-~~-g~~~---g~i~~~~~~-----~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
... .+ ++.. ..|++.... ......|+||||+|.+.. +..++||..|+. .-.
T Consensus 87 ~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~----~A~NALLK~LEE---------------pp~ 147 (584)
T PRK14952 87 IDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT----AGFNALLKIVEE---------------PPE 147 (584)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH----HHHHHHHHHHhc---------------CCC
Confidence 000 00 1111 112211111 123456999999999854 357788877753 225
Q ss_pred ceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 497 RVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
+++||++|+.++.|+++|++|+.++.|..++.++....+.+.+ +.. .+.++++++..|++. .++++|.
T Consensus 148 ~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~-----~~e-----gi~i~~~al~~Ia~~--s~GdlR~ 215 (584)
T PRK14952 148 HLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARIC-----EQE-----GVVVDDAVYPLVIRA--GGGSPRD 215 (584)
T ss_pred CeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHH--cCCCHHH
Confidence 7899988888899999999999999999999998877765544 232 467888998888764 4677999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
+...+++++... + .-.||.+.+.+.+|..
T Consensus 216 aln~Ldql~~~~------~---~~~It~~~v~~llg~~ 244 (584)
T PRK14952 216 TLSVLDQLLAGA------A---DTHVTYQRALGLLGAT 244 (584)
T ss_pred HHHHHHHHHhcc------C---CCCcCHHHHHHHHCCC
Confidence 988888876321 1 1247777777777753
No 103
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=8.5e-15 Score=177.13 Aligned_cols=214 Identities=21% Similarity=0.308 Sum_probs=145.3
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-----------------EecCC
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-----------------FSVGG 416 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-----------------~~~~~ 416 (1230)
+|++|++.+.+.+...+.. ...+..+||+|||||||||+|+++|+.++..... +.-+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~-----~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILN-----DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 5789999999988776642 2335679999999999999999999999753210 00000
Q ss_pred cchhHHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCc
Q psy8969 417 MSDVAEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDV 491 (1230)
Q Consensus 417 ~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~ 491 (1230)
-.|..++.+...+.+ ..|...+..+. ....||||||+|.+.. ...++|+..|+.
T Consensus 96 h~Dv~eidaas~~~v----d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----~a~naLLk~LEe------------- 154 (507)
T PRK06645 96 HPDIIEIDAASKTSV----DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----GAFNALLKTLEE------------- 154 (507)
T ss_pred CCcEEEeeccCCCCH----HHHHHHHHHHHhccccCCcEEEEEEChhhcCH----HHHHHHHHHHhh-------------
Confidence 111111211111111 22333333332 2346999999998853 345677766653
Q ss_pred cccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhh
Q psy8969 492 PVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRE 571 (1230)
Q Consensus 492 ~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e 571 (1230)
....++||++|+..+.|+++|++|+.++++.+++.+|...++.+.+ +. +.+.++++++..|++. .+
T Consensus 155 --pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~-----~~-----egi~ie~eAL~~Ia~~--s~ 220 (507)
T PRK06645 155 --PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYIT-----KQ-----ENLKTDIEALRIIAYK--SE 220 (507)
T ss_pred --cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cC
Confidence 1247888888889999999999999999999999999988877655 22 3577899999998875 46
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 572 SGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 572 ~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
+++|.+.+.+++++... .+. .-.||.+.+.+.+|..
T Consensus 221 GslR~al~~Ldkai~~~-----~~~--~~~It~~~V~~llg~~ 256 (507)
T PRK06645 221 GSARDAVSILDQAASMS-----AKS--DNIISPQVINQMLGLV 256 (507)
T ss_pred CCHHHHHHHHHHHHHhh-----ccC--CCCcCHHHHHHHHCCC
Confidence 78999988888865321 111 1148888888888754
No 104
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.2e-14 Score=175.35 Aligned_cols=215 Identities=24% Similarity=0.346 Sum_probs=142.0
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE--EEecCC-----------cc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF--RFSVGG-----------MS 418 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~--~~~~~~-----------~~ 418 (1230)
--+|++|++.+++.|...+.... -+..+||+|||||||||+|+++|+.++.... ...+|. ..
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFV 88 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCC
Confidence 34679999999999988875322 3345899999999999999999999986421 000111 11
Q ss_pred hhHHHhhccccccccCchhHHHHHHhh--cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKKT--KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~~--~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
|..++.+..+.-+... ..++..+... .....|+||||+|+|+. ...++||..|+.- -.
T Consensus 89 D~ieidaas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~----~a~NALLKtLEEP---------------p~ 148 (647)
T PRK07994 89 DLIEIDAASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSR----HSFNALLKTLEEP---------------PE 148 (647)
T ss_pred CceeecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCH----HHHHHHHHHHHcC---------------CC
Confidence 2222222111111111 1122222211 22346999999999854 4578898888641 25
Q ss_pred ceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 497 RVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
++.||++|+.+..|++.++|||..|.|..++.++....+.+.+ .. +.+.++++++..|++. .++.+|.
T Consensus 149 ~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il-----~~-----e~i~~e~~aL~~Ia~~--s~Gs~R~ 216 (647)
T PRK07994 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHIL-----QA-----EQIPFEPRALQLLARA--ADGSMRD 216 (647)
T ss_pred CeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHHH
Confidence 7889988999999999999999999999999998877666544 22 2467788888888754 5667888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
....++..+.. +. . .|+.+.+.+.+|.
T Consensus 217 Al~lldqaia~-------~~-~--~it~~~v~~~lg~ 243 (647)
T PRK07994 217 ALSLTDQAIAS-------GN-G--QVTTDDVSAMLGT 243 (647)
T ss_pred HHHHHHHHHHh-------cC-C--CcCHHHHHHHHcc
Confidence 77776654321 11 1 3677777777764
No 105
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=3.4e-14 Score=172.84 Aligned_cols=213 Identities=18% Similarity=0.264 Sum_probs=139.9
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-------------EecCCcchh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-------------FSVGGMSDV 420 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-------------~~~~~~~d~ 420 (1230)
+|++|++.+++.+...+... ..+..+||+||||||||++|+++|+.++...-. +..+...|.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 57899999999988877422 223458999999999999999999998742100 000011111
Q ss_pred HHHhhccccccccCchhHHHHHHh--hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCce
Q psy8969 421 AEIKGHRRTYVGAMPGKVIQCMKK--TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRV 498 (1230)
Q Consensus 421 ~~i~g~~~~~~g~~~g~i~~~~~~--~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v 498 (1230)
.++.+....-+... ..++..+.. ......||||||+|++.. +..++||..|+.. -..+
T Consensus 91 ieidaas~~gvd~i-r~ii~~~~~~p~~g~~kViIIDEa~~ls~----~a~naLLK~LEep---------------p~~v 150 (546)
T PRK14957 91 IEIDAASRTGVEET-KEILDNIQYMPSQGRYKVYLIDEVHMLSK----QSFNALLKTLEEP---------------PEYV 150 (546)
T ss_pred EEeecccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechhhccH----HHHHHHHHHHhcC---------------CCCc
Confidence 11111000000000 112222221 112345999999999854 3567788777641 1467
Q ss_pred EEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHH
Q psy8969 499 LFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQ 578 (1230)
Q Consensus 499 ~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~ 578 (1230)
+||++|+....|+++|++||.+++|..++.++....+.+.+ +. +.+.++++++..|++. .++++|.+.
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il-----~~-----egi~~e~~Al~~Ia~~--s~GdlR~al 218 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIIL-----AK-----ENINSDEQSLEYIAYH--AKGSLRDAL 218 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHHHHH
Confidence 78877788999999999999999999999999877665533 22 3467889999998865 367799998
Q ss_pred HHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 579 KHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 579 ~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
..+++++... + -.|+.+.+.+.+|.
T Consensus 219 nlLek~i~~~------~----~~It~~~V~~~l~~ 243 (546)
T PRK14957 219 SLLDQAISFC------G----GELKQAQIKQMLGI 243 (546)
T ss_pred HHHHHHHHhc------c----CCCCHHHHHHHHcc
Confidence 8888866321 1 14788888887763
No 106
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=5.4e-14 Score=170.95 Aligned_cols=202 Identities=24% Similarity=0.357 Sum_probs=140.3
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC-----------------------
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE----------------------- 408 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~----------------------- 408 (1230)
-.+|++|++.+++.|..++... ..+..+||+|||||||||+|+++|+.+...
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~d 86 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPD 86 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCc
Confidence 3467999999999999988642 234557999999999999999999998631
Q ss_pred eEEEecCCcchhHHHhhccccccccCchhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhh
Q psy8969 409 YFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNAN 483 (1230)
Q Consensus 409 ~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~ 483 (1230)
++.++..+.... ..|++....+ .....||||||+|.+.. +..++|+..|+.
T Consensus 87 v~el~~~~~~~v---------------d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~----~a~naLLk~LEe----- 142 (504)
T PRK14963 87 VLEIDAASNNSV---------------EDVRDLREKVLLAPLRGGRKVYILDEAHMMSK----SAFNALLKTLEE----- 142 (504)
T ss_pred eEEecccccCCH---------------HHHHHHHHHHhhccccCCCeEEEEECccccCH----HHHHHHHHHHHh-----
Confidence 222221111100 1122211111 12345999999998743 335566655542
Q ss_pred hhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHH
Q psy8969 484 FLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQV 563 (1230)
Q Consensus 484 f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~ 563 (1230)
+..+++||+++|....|++++++|+.++.+..++.++....+.+.+ ++. .+.++++++..
T Consensus 143 ----------p~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~-----~~e-----gi~i~~~Al~~ 202 (504)
T PRK14963 143 ----------PPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL-----EAE-----GREAEPEALQL 202 (504)
T ss_pred ----------CCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHH
Confidence 1246788888899999999999999999999999999887776644 233 45678999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCCc
Q psy8969 564 LIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKPI 615 (1230)
Q Consensus 564 li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 615 (1230)
|++. .++.+|.+...+++++.. + . .||.+++.+.+|.+.
T Consensus 203 ia~~--s~GdlR~aln~Lekl~~~-------~--~--~It~~~V~~~l~~~~ 241 (504)
T PRK14963 203 VARL--ADGAMRDAESLLERLLAL-------G--T--PVTRKQVEEALGLPP 241 (504)
T ss_pred HHHH--cCCCHHHHHHHHHHHHhc-------C--C--CCCHHHHHHHHCCCc
Confidence 9866 467899888888876521 1 1 488888888887543
No 107
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=6.6e-14 Score=171.14 Aligned_cols=215 Identities=22% Similarity=0.296 Sum_probs=140.1
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-------------EecCCcc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-------------FSVGGMS 418 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-------------~~~~~~~ 418 (1230)
--+|++|++.+++.|..++... .-++.+||+||||||||++|+++|+.++..... +.-+.-.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-----ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-----RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCC
Confidence 3357899999999999888532 224679999999999999999999999853100 0001111
Q ss_pred hhHHHhhccccccccCchhHHHHHHh--hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKK--TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~--~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
|..+|.+.....+... ..+++.+.. ......||||||+|++.. +..++||..|+.. ..
T Consensus 89 Dv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~----~a~naLLk~LEEP---------------~~ 148 (624)
T PRK14959 89 DVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTR----EAFNALLKTLEEP---------------PA 148 (624)
T ss_pred ceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCH----HHHHHHHHHhhcc---------------CC
Confidence 1111211111111100 112222221 122345999999999853 3456676666421 24
Q ss_pred ceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 497 RVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
+++||++||..+.|++.|++||.+|.|..++.+|...++.+.+ +. +.+.++++++..|++. ..+++|.
T Consensus 149 ~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il-----~~-----egi~id~eal~lIA~~--s~GdlR~ 216 (624)
T PRK14959 149 RVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVL-----GR-----EGVDYDPAAVRLIARR--AAGSVRD 216 (624)
T ss_pred CEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHHH
Confidence 6889999999999999999999999999999999887776633 22 3466888999888864 3466888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
+...+++++. .+. . .|+.+.+.+++|.
T Consensus 217 Al~lLeqll~-------~g~--~-~It~d~V~~~lg~ 243 (624)
T PRK14959 217 SMSLLGQVLA-------LGE--S-RLTIDGARGVLGL 243 (624)
T ss_pred HHHHHHHHHH-------hcC--C-CcCHHHHHHHhCC
Confidence 8777776431 111 1 5888888888764
No 108
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.54 E-value=2.8e-14 Score=182.05 Aligned_cols=197 Identities=23% Similarity=0.314 Sum_probs=136.6
Q ss_pred HhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh----------CCCeEEEecCCc
Q psy8969 348 AAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL----------NREYFRFSVGGM 417 (1230)
Q Consensus 348 ~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l----------~~~~~~~~~~~~ 417 (1230)
|+.---++++|.++..+++++.|... ....++|+||||||||++|++||..+ +..++.++++.+
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l 249 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSL 249 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHH
Confidence 34333347999999999988877432 23357899999999999999999988 677777775433
Q ss_pred chhHHHhhccccccccCchhHHHHHHhhcCC-CCEEEEecccccCCCCC--CChhhHHHhhcChhhhhhhhhhccCcccc
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKTKTE-NPLVLIDEVDKIGKGYS--GDPASALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~-~pvillDEIDk~~~~~~--~~~~~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
.. | ..|.|....++...|..+... +.||||||||.+..... ++..+ ...+|.| ++ .
T Consensus 250 ~a-----~--~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~-~~~~L~~---------~l----~ 308 (731)
T TIGR02639 250 LA-----G--TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD-ASNLLKP---------AL----S 308 (731)
T ss_pred hh-----h--ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH-HHHHHHH---------HH----h
Confidence 32 1 247788888888888876543 45888999999864321 11111 1122222 11 2
Q ss_pred CCceEEEEecCC-----CCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh
Q psy8969 495 LSRVLFICTANV-----IDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC 569 (1230)
Q Consensus 495 ~s~v~~I~TaN~-----~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~ 569 (1230)
...+.+|++||. +..+++||++||.+|.+..++.++...|++... ++.. . ...+.++++++..+++.-.
T Consensus 309 ~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~-~~~e-~----~~~v~i~~~al~~~~~ls~ 382 (731)
T TIGR02639 309 SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK-EKYE-E----FHHVKYSDEALEAAVELSA 382 (731)
T ss_pred CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH-HHHH-h----ccCcccCHHHHHHHHHhhh
Confidence 357889988885 446899999999999999999999999998754 2221 1 1257899999999886654
Q ss_pred hhhhHHHH
Q psy8969 570 RESGVRNL 577 (1230)
Q Consensus 570 ~e~gvR~l 577 (1230)
+..+-|.|
T Consensus 383 ryi~~r~~ 390 (731)
T TIGR02639 383 RYINDRFL 390 (731)
T ss_pred cccccccC
Confidence 54444443
No 109
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=4.7e-14 Score=174.71 Aligned_cols=213 Identities=23% Similarity=0.343 Sum_probs=145.1
Q ss_pred hhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE-------------EEecCCc
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF-------------RFSVGGM 417 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~-------------~~~~~~~ 417 (1230)
.--+|++|++.+++.|..++... .-+..+||+||||+|||++|+++|++++.+-- .+..|..
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRS 87 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCC
Confidence 34468999999999999988532 23456899999999999999999999874310 1111111
Q ss_pred chhHHHhhccccccccCchhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcc
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVP 492 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~ 492 (1230)
.|..++.|.....+ ..|++....+ .....|+||||+|.++. ...++||+.|+.-
T Consensus 88 ~d~~eid~~s~~~v----~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~----~a~naLLk~LEep------------- 146 (576)
T PRK14965 88 VDVFEIDGASNTGV----DDIRELRENVKYLPSRSRYKIFIIDEVHMLST----NAFNALLKTLEEP------------- 146 (576)
T ss_pred CCeeeeeccCccCH----HHHHHHHHHHHhccccCCceEEEEEChhhCCH----HHHHHHHHHHHcC-------------
Confidence 22222221111111 1222222222 12345999999999854 3567888887631
Q ss_pred ccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhh
Q psy8969 493 VDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRES 572 (1230)
Q Consensus 493 ~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~ 572 (1230)
.++++||++||.++.|+++|++||.+++|..++.++....+...+ ++ +.+.++++++..|++. .++
T Consensus 147 --p~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~-----~~-----egi~i~~~al~~la~~--a~G 212 (576)
T PRK14965 147 --PPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIA-----DQ-----EGISISDAALALVARK--GDG 212 (576)
T ss_pred --CCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHH-----HH-----hCCCCCHHHHHHHHHH--cCC
Confidence 247889988899999999999999999999999988876665533 23 3567889999998876 467
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 573 GVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 573 gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
++|.+...+++++... ++ .|+.+++...+|.
T Consensus 213 ~lr~al~~Ldqliay~------g~----~It~edV~~llG~ 243 (576)
T PRK14965 213 SMRDSLSTLDQVLAFC------GD----AVGDDDVAELLGV 243 (576)
T ss_pred CHHHHHHHHHHHHHhc------cC----CCCHHHHHHHhCC
Confidence 8999888888766431 11 3788888887763
No 110
>KOG1051|consensus
Probab=99.53 E-value=2.4e-13 Score=170.04 Aligned_cols=236 Identities=24% Similarity=0.387 Sum_probs=160.9
Q ss_pred ccccHHHHhhhhcccccChHHHHHHHHHHHHHhhh--cCCCCCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecC
Q psy8969 341 ENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQL--KGTTQGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVG 415 (1230)
Q Consensus 341 ~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~--~~~~~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~ 415 (1230)
++..+....+.|.+.++||+++-..|-+.|..... ....+.--++|.||.|||||-||+++|..+. -.|++++++
T Consensus 549 e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDms 628 (898)
T KOG1051|consen 549 EAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMS 628 (898)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechh
Confidence 45689999999999999999999999998854332 2222445699999999999999999999985 358899888
Q ss_pred CcchhHHHhhccccccccCch-hHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcccc
Q psy8969 416 GMSDVAEIKGHRRTYVGAMPG-KVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 416 ~~~d~~~i~g~~~~~~g~~~g-~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
...+.+.+.|.-..|+|...| .+-.+++ +....|||||||||+ +.+....|+++||... +..-.+..+|
T Consensus 629 e~~evskligsp~gyvG~e~gg~Lteavr--rrP~sVVLfdeIEkA----h~~v~n~llq~lD~Gr----ltDs~Gr~Vd 698 (898)
T KOG1051|consen 629 EFQEVSKLIGSPPGYVGKEEGGQLTEAVK--RRPYSVVLFEEIEKA----HPDVLNILLQLLDRGR----LTDSHGREVD 698 (898)
T ss_pred hhhhhhhccCCCcccccchhHHHHHHHHh--cCCceEEEEechhhc----CHHHHHHHHHHHhcCc----cccCCCcEee
Confidence 766666777777789988776 4433332 234459999999996 6678899999999743 4445678899
Q ss_pred CCceEEEEecCCCCC----------------------------------------CCHhhhcccceeecCC-CCHHHHHH
Q psy8969 495 LSRVLFICTANVIDT----------------------------------------IPEPLRDRMEMIDVSG-YVAEEKVA 533 (1230)
Q Consensus 495 ~s~v~~I~TaN~~~~----------------------------------------I~~~L~~R~~~i~~~~-~~~~e~~~ 533 (1230)
++|++||+|+|.-.. ..+.++.|.+-|.++. ....+..+
T Consensus 699 ~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~ 778 (898)
T KOG1051|consen 699 FKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIE 778 (898)
T ss_pred ccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhh
Confidence 999999999995221 1233333444333332 33344333
Q ss_pred HHHHhhcc--hhHHhcCCCCCCcccCHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHH
Q psy8969 534 IAAQYLIP--QAMKESGLSPEQITLEPSAIQVLI-KNYCRESGVRNLQKHIEKVTRKVA 589 (1230)
Q Consensus 534 i~~~~l~~--~~~~~~gl~~~~i~~~~~~~~~li-~~~~~e~gvR~l~~~i~~i~r~~~ 589 (1230)
|+..-+.. +-+++.+ -...+++.+...+. +.|.-..|+|+++|.|..++.+..
T Consensus 779 i~~~~~~e~~~r~~~~~---~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~l 834 (898)
T KOG1051|consen 779 IVNKQLTEIEKRLEERE---LLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRL 834 (898)
T ss_pred hhhhHHHHHHHHhhhhH---HHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHH
Confidence 43322211 1111211 12245555555443 458889999999999998876643
No 111
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.1e-13 Score=170.87 Aligned_cols=212 Identities=25% Similarity=0.337 Sum_probs=141.4
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE-------------EEecCCcc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF-------------RFSVGGMS 418 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~-------------~~~~~~~~ 418 (1230)
.-+|++|++.+++.+...+.. ...+..+||+||||+|||++|+.+|++++.+-- .+.-+...
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~-----~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQ-----GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLM 88 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCC
Confidence 346899999999999888753 233567899999999999999999999874210 00000011
Q ss_pred hhHHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccc
Q psy8969 419 DVAEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPV 493 (1230)
Q Consensus 419 d~~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~ 493 (1230)
|..++.+.. +..-..|++....+. ....|+||||+|.+.. ...++||..|+..
T Consensus 89 dv~eidaas----~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~----~a~naLLKtLEep-------------- 146 (559)
T PRK05563 89 DVIEIDAAS----NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST----GAFNALLKTLEEP-------------- 146 (559)
T ss_pred CeEEeeccc----cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----HHHHHHHHHhcCC--------------
Confidence 111111100 001112222222222 2345999999999853 3567888776531
Q ss_pred cCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhh
Q psy8969 494 DLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESG 573 (1230)
Q Consensus 494 d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~g 573 (1230)
-.+++||++|+.++.|++.+++|+..++|..++.++...++...+ ++ +.+.++++++..|++. .+++
T Consensus 147 -p~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~-----~~-----egi~i~~~al~~ia~~--s~G~ 213 (559)
T PRK05563 147 -PAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYIL-----DK-----EGIEYEDEALRLIARA--AEGG 213 (559)
T ss_pred -CCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCC
Confidence 247888988888999999999999999999999998877765543 23 3567788999988875 4678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 574 VRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 574 vR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
+|.+...+++++.. . .. .|+.+++.+.+|.
T Consensus 214 ~R~al~~Ldq~~~~-------~-~~--~It~~~V~~vlg~ 243 (559)
T PRK05563 214 MRDALSILDQAISF-------G-DG--KVTYEDALEVTGS 243 (559)
T ss_pred HHHHHHHHHHHHHh-------c-cC--CCCHHHHHHHhCC
Confidence 99888887765432 1 11 3788888877764
No 112
>KOG3576|consensus
Probab=99.51 E-value=3.1e-15 Score=152.66 Aligned_cols=114 Identities=29% Similarity=0.612 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCCCCccChhHHHhhhhcccCCCceecCCCccCccccChhhHHHHHhhccCCCCccccccccccccCCchh
Q psy8969 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSS 868 (1230)
Q Consensus 789 ekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekpy~C~~~~Cgk~F~~~s~L~~H~r~Htgekpy~C~~~~C~k~F~~~~~ 868 (1230)
...|.|.+ |+|.|.-+..|.+|++-|...+.|-|.. |||.|...-.|++|+|+|||-+||+|.. |+|+|+++.+
T Consensus 115 ~d~ftCrv--CgK~F~lQRmlnrh~kch~~vkr~lct~--cgkgfndtfdlkrh~rthtgvrpykc~~--c~kaftqrcs 188 (267)
T KOG3576|consen 115 QDSFTCRV--CGKKFGLQRMLNRHLKCHSDVKRHLCTF--CGKGFNDTFDLKRHTRTHTGVRPYKCSL--CEKAFTQRCS 188 (267)
T ss_pred CCeeeeeh--hhhhhhHHHHHHHHhhhccHHHHHHHhh--ccCcccchhhhhhhhccccCccccchhh--hhHHHHhhcc
Confidence 45689999 9999999999999999999999999999 9999999999999999999999999987 9999999999
Q ss_pred HhhhhccccC-----------CCCccCCCCCcccCChhhHHhHHhhhcCCC
Q psy8969 869 LYKHTLVHSD-----------IRPFICDRCPRSYRQLCTLNVHKKTNHRES 908 (1230)
Q Consensus 869 L~~H~~~H~~-----------ekpy~C~~Cgk~F~~~~~L~~H~k~hh~~~ 908 (1230)
|..|.+.-+| .+-|.|+.||.+-.....+..|.+.||...
T Consensus 189 leshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S 239 (267)
T KOG3576|consen 189 LESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS 239 (267)
T ss_pred HHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence 9999875443 356999999999999999999999998654
No 113
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.51 E-value=1.9e-14 Score=151.50 Aligned_cols=117 Identities=31% Similarity=0.456 Sum_probs=82.7
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCC----CeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecc
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNR----EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEV 457 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~----~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEI 457 (1230)
..++|.||+|||||.+|++||+.++. ++++++++...+..+....-...+|+.++.+...- ..|||||||
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~------~gVVllDEi 77 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEE------GGVVLLDEI 77 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHH------HTEEEEETG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccc------hhhhhhHHH
Confidence 46899999999999999999999995 99999987776622221111234455555543221 239999999
Q ss_pred cccCCCCC--C-----ChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC
Q psy8969 458 DKIGKGYS--G-----DPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID 508 (1230)
Q Consensus 458 Dk~~~~~~--~-----~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~ 508 (1230)
||+..... . +..+.||++||... +.|.+ +..+|+++++||+|+|.-.
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g~---~~d~~-g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEGGT---LTDSY-GRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHHSE---EEETT-CCEEEGTTEEEEEEESSST
T ss_pred hhccccccccchhhHHHHHHHHHHHhcccc---eeccc-ceEEEeCCceEEEeccccc
Confidence 99865211 1 34678999998643 34443 4789999999999999765
No 114
>KOG0741|consensus
Probab=99.50 E-value=2.2e-14 Score=165.33 Aligned_cols=167 Identities=28% Similarity=0.430 Sum_probs=117.6
Q ss_pred CCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE-ecCCcchhHHHhhccccccccCchhHHHHHHhhcCC------C
Q psy8969 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF-SVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTE------N 449 (1230)
Q Consensus 377 ~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~-~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~------~ 449 (1230)
|...-++||||||||||||.+||-|.+.|++.-=.+ +.-.+-+ +|||+.+..|+..|+.|..+ +
T Consensus 252 Gi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~---------KYVGeSE~NvR~LFaDAEeE~r~~g~~ 322 (744)
T KOG0741|consen 252 GIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN---------KYVGESEENVRKLFADAEEEQRRLGAN 322 (744)
T ss_pred CccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH---------HhhcccHHHHHHHHHhHHHHHHhhCcc
Confidence 455567899999999999999999999998643222 2222222 79999999999999876532 2
Q ss_pred ---CEEEEecccccCCCCC--CC-------hhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhc-
Q psy8969 450 ---PLVLIDEVDKIGKGYS--GD-------PASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRD- 516 (1230)
Q Consensus 450 ---pvillDEIDk~~~~~~--~~-------~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~- 516 (1230)
-||++||||.|.+.+. ++ ..+.||.-+|.-. -+.||++|.-||+.|-||+||++
T Consensus 323 SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe-------------qLNNILVIGMTNR~DlIDEALLRP 389 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE-------------QLNNILVIGMTNRKDLIDEALLRP 389 (744)
T ss_pred CCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH-------------hhhcEEEEeccCchhhHHHHhcCC
Confidence 2899999999975331 11 1244555555421 25699999999999999999998
Q ss_pred -ccce-eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh
Q psy8969 517 -RMEM-IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC 569 (1230)
Q Consensus 517 -R~~~-i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~ 569 (1230)
|++| ++++-+.+.-.++|.+=+- +-++++++-..++.+ ..+..+-++|+
T Consensus 390 GRlEVqmEIsLPDE~gRlQIl~IHT--~rMre~~~l~~dVdl--~elA~lTKNfS 440 (744)
T KOG0741|consen 390 GRLEVQMEISLPDEKGRLQILKIHT--KRMRENNKLSADVDL--KELAALTKNFS 440 (744)
T ss_pred CceEEEEEEeCCCccCceEEEEhhh--hhhhhcCCCCCCcCH--HHHHHHhcCCc
Confidence 9997 6777777777777765432 445666654445443 44555666664
No 115
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=1.1e-13 Score=177.80 Aligned_cols=188 Identities=15% Similarity=0.223 Sum_probs=128.3
Q ss_pred HhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC----------CCeEEEecCCc
Q psy8969 348 AAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN----------REYFRFSVGGM 417 (1230)
Q Consensus 348 ~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~----------~~~~~~~~~~~ 417 (1230)
|+.---++++|.++..+++++.+..... ..++|+||||||||++|+.+|+.+. ..++.++++.+
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh
Confidence 4444456899999998888887743322 3477999999999999999999874 34556665543
Q ss_pred chhHHHhhccccccccCchhHHHHHHhhcC--CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKTKT--ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~--~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
.. | ..|.|+...++.+.+..+.. .+.||||||||.+.....++.....-.+|.| + +..
T Consensus 255 ~a-----g--~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp---------~----l~~ 314 (852)
T TIGR03345 255 QA-----G--ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP---------A----LAR 314 (852)
T ss_pred hc-----c--cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH---------H----hhC
Confidence 21 1 14678877888888886643 3568899999999753221111111112222 2 123
Q ss_pred CceEEEEecCC-----CCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHH
Q psy8969 496 SRVLFICTANV-----IDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKN 567 (1230)
Q Consensus 496 s~v~~I~TaN~-----~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~ 567 (1230)
+.+.+|+||+. +..+++||++||.+|.+..++.++...|++ .+.+..-..+ .+.++++++..+++.
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~-~~~~~~e~~~-----~v~i~d~al~~~~~l 385 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLR-GLAPVLEKHH-----GVLILDEAVVAAVEL 385 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHH-HHHHhhhhcC-----CCeeCHHHHHHHHHH
Confidence 57888977774 457999999999999999999999999973 3333222223 477888888887754
No 116
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.1e-13 Score=167.20 Aligned_cols=211 Identities=20% Similarity=0.292 Sum_probs=139.8
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE--ecCC-----------cchh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF--SVGG-----------MSDV 420 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~--~~~~-----------~~d~ 420 (1230)
+|++|++.+++.+..++... ..+..+||+|||||||||+|+++|+.++.+.-.- .+|. ..|.
T Consensus 16 ~divGq~~v~~~L~~~i~~~-----~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQ-----RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 57899999999988887532 2345689999999999999999999997532100 0111 1111
Q ss_pred HHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 421 AEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 421 ~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
.++.+....- -..|++.+..+. ....|+||||+|++.. ...++||..|+.. -
T Consensus 91 ~ei~~~~~~~----vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~----~a~naLLK~LEep---------------p 147 (527)
T PRK14969 91 IEVDAASNTQ----VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK----SAFNAMLKTLEEP---------------P 147 (527)
T ss_pred eEeeccccCC----HHHHHHHHHHHhhCcccCCceEEEEcCcccCCH----HHHHHHHHHHhCC---------------C
Confidence 1111100000 012222222221 2245999999999854 3467788777531 2
Q ss_pred CceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHH
Q psy8969 496 SRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVR 575 (1230)
Q Consensus 496 s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR 575 (1230)
.+++||++||.+..|++.+++||.++.|..++.++....+.+.+ ++. .+.++++++..|++. .++++|
T Consensus 148 ~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il-----~~e-----gi~~~~~al~~la~~--s~Gslr 215 (527)
T PRK14969 148 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHIL-----EQE-----NIPFDATALQLLARA--AAGSMR 215 (527)
T ss_pred CCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHH--cCCCHH
Confidence 46888888888999999999999999999999999877665543 232 466788999888865 456688
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 576 NLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 576 ~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
.+.+.+++++.. + . -.|+.+.+.+.+|..
T Consensus 216 ~al~lldqai~~-------~-~--~~I~~~~v~~~~~~~ 244 (527)
T PRK14969 216 DALSLLDQAIAY-------G-G--GTVNESEVRAMLGAI 244 (527)
T ss_pred HHHHHHHHHHHh-------c-C--CCcCHHHHHHHHCCC
Confidence 888888776532 1 1 137888888777643
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=2.5e-13 Score=164.51 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=140.4
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC-----------------------
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE----------------------- 408 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~----------------------- 408 (1230)
--+|++|++.+++.+..++... .-+..+||+||||+|||++|+++|+++..+
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~ 86 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI 86 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC
Confidence 3467999999999999887432 344567999999999999999999998421
Q ss_pred -eEEEecCCcchhHHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhh
Q psy8969 409 -YFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNA 482 (1230)
Q Consensus 409 -~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~ 482 (1230)
++.++...-.. -..|++.+.... ....|+||||+|.+.. +..++||..|+..
T Consensus 87 dv~eldaas~~g---------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~----~A~NALLK~LEEp--- 144 (535)
T PRK08451 87 DIIEMDAASNRG---------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK----EAFNALLKTLEEP--- 144 (535)
T ss_pred eEEEeccccccC---------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCH----HHHHHHHHHHhhc---
Confidence 11111110000 012333332211 2345999999999843 4567888877641
Q ss_pred hhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHH
Q psy8969 483 NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQ 562 (1230)
Q Consensus 483 ~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~ 562 (1230)
-+++.||++||.+..|+++|++|+.++++.+++.++....+.+.+ .+. .+.++++++.
T Consensus 145 ------------p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il-----~~E-----Gi~i~~~Al~ 202 (535)
T PRK08451 145 ------------PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTIL-----EKE-----GVSYEPEALE 202 (535)
T ss_pred ------------CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHH
Confidence 246788888888899999999999999999999988877665433 333 4678899999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 563 VLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 563 ~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
.|++. .++++|.+...+++++... . -.||.+.+.+.+|..
T Consensus 203 ~Ia~~--s~GdlR~alnlLdqai~~~------~----~~It~~~V~~~lg~~ 242 (535)
T PRK08451 203 ILARS--GNGSLRDTLTLLDQAIIYC------K----NAITESKVADMLGLL 242 (535)
T ss_pred HHHHH--cCCcHHHHHHHHHHHHHhc------C----CCCCHHHHHHHhCCC
Confidence 88875 4678898888887755321 1 136777777777643
No 118
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.48 E-value=1.7e-13 Score=164.05 Aligned_cols=211 Identities=28% Similarity=0.397 Sum_probs=161.6
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe-------------EEEecCCcchh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-------------FRFSVGGMSDV 420 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~-------------~~~~~~~~~d~ 420 (1230)
+|+.|++.|.+.|...+...++. ...||.||-||||||+||.+|++|+..- ..+.-|...|.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~-----hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~Dv 90 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIA-----HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDV 90 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcch-----hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccc
Confidence 56799999999999888654433 3578999999999999999999998652 13455667788
Q ss_pred HHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 421 AEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 421 ~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
-||.+.+.+-|. .|++...... ....|++|||++.+.+ ...+|||..|+. .-
T Consensus 91 iEiDaASn~gVd----diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~----~afNALLKTLEE---------------PP 147 (515)
T COG2812 91 IEIDAASNTGVD----DIREIIEKVNYAPSEGRYKVYIIDEVHMLSK----QAFNALLKTLEE---------------PP 147 (515)
T ss_pred hhhhhhhccChH----HHHHHHHHhccCCccccceEEEEecHHhhhH----HHHHHHhccccc---------------Cc
Confidence 888776666443 3444444433 3456999999999865 357899998864 23
Q ss_pred CceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHH
Q psy8969 496 SRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVR 575 (1230)
Q Consensus 496 s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR 575 (1230)
++|+||++|..++.||.-++|||..+.|...+.++....+... ++.++|.++++++..|.+. .++++|
T Consensus 148 ~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i----------~~~E~I~~e~~aL~~ia~~--a~Gs~R 215 (515)
T COG2812 148 SHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAI----------LDKEGINIEEDALSLIARA--AEGSLR 215 (515)
T ss_pred cCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHH----------HHhcCCccCHHHHHHHHHH--cCCChh
Confidence 6899999999999999999999999999999998765544433 3467999999999999876 789999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 576 NLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 576 ~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
.....+..+... +. -.|+.+.+.+.+|..
T Consensus 216 DalslLDq~i~~-------~~---~~It~~~v~~~lG~~ 244 (515)
T COG2812 216 DALSLLDQAIAF-------GE---GEITLESVRDMLGLT 244 (515)
T ss_pred hHHHHHHHHHHc-------cC---CcccHHHHHHHhCCC
Confidence 998888875532 11 247888888888744
No 119
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=4.1e-13 Score=163.47 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=137.8
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe-EEE-ecCCcchhHHHh-h-cc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-FRF-SVGGMSDVAEIK-G-HR 427 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~-~~~-~~~~~~d~~~i~-g-~~ 427 (1230)
--++++|++.+++.+...+.. ...+..+||+||||+|||++|+++|+.+...- ... .++.......+. + |.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~-----~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~ 88 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILN-----NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSV 88 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCC
Confidence 335789999999999887742 23346799999999999999999999986311 000 011111100000 0 00
Q ss_pred cc-cc-cc---CchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 428 RT-YV-GA---MPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 428 ~~-~~-g~---~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
.. .+ ++ .-+.|+.....+. ....|++|||+|.+.. ...++||..|+.. ...
T Consensus 89 DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~----~A~NaLLKtLEEP---------------p~~ 149 (605)
T PRK05896 89 DIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST----SAWNALLKTLEEP---------------PKH 149 (605)
T ss_pred ceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH----HHHHHHHHHHHhC---------------CCc
Confidence 00 00 00 0012222222211 1245999999999843 3467788777631 246
Q ss_pred eEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHH
Q psy8969 498 VLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNL 577 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l 577 (1230)
++||++|+.++.|+++|++||.++.+.+++.++...++.+.+ .+ +.+.++++++..+++. ..+++|.+
T Consensus 150 tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il-----~k-----egi~Is~eal~~La~l--S~GdlR~A 217 (605)
T PRK05896 150 VVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIA-----KK-----EKIKIEDNAIDKIADL--ADGSLRDG 217 (605)
T ss_pred EEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCcHHHH
Confidence 888888888999999999999999999999999877766544 22 3566888998888765 34668888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 578 QKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 578 ~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
.+.++.+.... + . .|+.+.+.+.+|
T Consensus 218 lnlLekL~~y~------~--~--~It~e~V~ellg 242 (605)
T PRK05896 218 LSILDQLSTFK------N--S--EIDIEDINKTFG 242 (605)
T ss_pred HHHHHHHHhhc------C--C--CCCHHHHHHHhc
Confidence 88888755321 1 1 266666666555
No 120
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=6.7e-13 Score=164.51 Aligned_cols=222 Identities=22% Similarity=0.280 Sum_probs=143.6
Q ss_pred HHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhh
Q psy8969 346 TQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKG 425 (1230)
Q Consensus 346 ~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g 425 (1230)
.+-|-..-+|++|++.+++.+...+... .-+..+||+||||||||++|+++|+.+..+-...............|
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~ 84 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN 84 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence 3334445578999999999988887532 23456899999999999999999999875421100000000000001
Q ss_pred -cccccccc-----CchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcccc
Q psy8969 426 -HRRTYVGA-----MPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 426 -~~~~~~g~-----~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
+...+.+. ....|++....+. ....|+||||+|.+.. ...++||..|+..
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~----~A~NALLKtLEEP--------------- 145 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK----SAFNALLKTLEEP--------------- 145 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH----HHHHHHHHHhhcC---------------
Confidence 00001010 0122333333322 2345999999999853 3567888777631
Q ss_pred CCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhH
Q psy8969 495 LSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 495 ~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gv 574 (1230)
-..++||++|+.++.|+++|++||.++.+.+++.++...++...+ +.. .+.++++++..+++. .++++
T Consensus 146 P~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il-----~ke-----gI~id~eAl~~LA~l--S~Gsl 213 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFIL-----EKE-----NISYEKNALKLIAKL--SSGSL 213 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHH--cCCCH
Confidence 247888888889999999999999999999999999877776533 233 467788888888765 35678
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 575 RNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 575 R~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
|.+.+.++++... +. . .|+.+.+.+.+|.
T Consensus 214 R~AlslLekl~~y-------~~-~--~It~e~V~ellg~ 242 (725)
T PRK07133 214 RDALSIAEQVSIF-------GN-N--KITLKNVEELFGL 242 (725)
T ss_pred HHHHHHHHHHHHh-------cc-C--CCCHHHHHHHHcC
Confidence 8888887775421 11 1 2777777766653
No 121
>KOG0744|consensus
Probab=99.47 E-value=2.3e-13 Score=149.59 Aligned_cols=172 Identities=28% Similarity=0.397 Sum_probs=112.7
Q ss_pred hcccccChHHHHHHHHHHHHHhhhc---C-----CCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc-chhHH
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLK---G-----TTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM-SDVAE 422 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~---~-----~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~-~d~~~ 422 (1230)
||+..|==..+|++++.|.+..-+- + ..-.+.|||+||||||||||+|++|..|.. |.+-.-- .-.-|
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSI---R~~~~y~~~~liE 216 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSI---RTNDRYYKGQLIE 216 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhhee---eecCccccceEEE
Confidence 5555555578999999998654331 1 122378999999999999999999999863 3221000 00112
Q ss_pred Hhhc--cccccccCchhHHHHHHhh----cCCCC--EEEEecccccCCCC-----CCCh------hhHHHhhcChhhhhh
Q psy8969 423 IKGH--RRTYVGAMPGKVIQCMKKT----KTENP--LVLIDEVDKIGKGY-----SGDP------ASALLEMLDPEQNAN 483 (1230)
Q Consensus 423 i~g~--~~~~~g~~~g~i~~~~~~~----~~~~p--villDEIDk~~~~~-----~~~~------~~all~~ld~~q~~~ 483 (1230)
|..| ..+|.++.-..|.+.|++. ...+. .+||||++.++..+ +..| .+|||.-||.-
T Consensus 217 inshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl---- 292 (423)
T KOG0744|consen 217 INSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL---- 292 (423)
T ss_pred EehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh----
Confidence 2222 2378888877777777653 33344 34589999986322 2233 35666655541
Q ss_pred hhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCC-CCHHHHHHHHHHhh
Q psy8969 484 FLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSG-YVAEEKVAIAAQYL 539 (1230)
Q Consensus 484 f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~-~~~~e~~~i~~~~l 539 (1230)
-.-.||++.+|+|..+.||.|+.||-+++..-| ++.+-...|.+..+
T Consensus 293 ---------K~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 293 ---------KRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred ---------ccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHH
Confidence 123699999999999999999999999865555 55555666666544
No 122
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.47 E-value=3e-13 Score=153.95 Aligned_cols=148 Identities=19% Similarity=0.222 Sum_probs=104.9
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccc--cc-----CchhHHHHHHhhcCCCCEEE
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYV--GA-----MPGKVIQCMKKTKTENPLVL 453 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~--g~-----~~g~i~~~~~~~~~~~pvil 453 (1230)
++.|||.||||||||++|+.||+.+|++++++++..-.+..++.|.....+ |. .+|.+..++ ..+-++|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~----~~g~ill 139 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL----QHNVALC 139 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH----hCCeEEE
Confidence 456999999999999999999999999999999988888788877643221 21 234443332 3455799
Q ss_pred EecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC-CceEEEEecCCCC------------CCCHhhhcccce
Q psy8969 454 IDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL-SRVLFICTANVID------------TIPEPLRDRMEM 520 (1230)
Q Consensus 454 lDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~-s~v~~I~TaN~~~------------~I~~~L~~R~~~ 520 (1230)
|||||.+ +.+..++|+.+||.+..- .++.. +..+.. ..+.+|+|+|+.+ .+++|++|||.+
T Consensus 140 lDEin~a----~p~~~~~L~~lLE~~~~l-~i~~~-~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 140 FDEYDAG----RPDVMFVIQRVLEAGGKL-TLLDQ-NRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred echhhcc----CHHHHHHHHHHhccCCeE-EECCC-ceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 9999986 456678888999852111 11111 122322 3788999999864 569999999986
Q ss_pred e-ecCCCCHHHHHHHHHHh
Q psy8969 521 I-DVSGYVAEEKVAIAAQY 538 (1230)
Q Consensus 521 i-~~~~~~~~e~~~i~~~~ 538 (1230)
+ .+.-++.++...|+.+.
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred EeeCCCCCHHHHHHHHHhh
Confidence 4 67766777777776553
No 123
>KOG0991|consensus
Probab=99.47 E-value=1.4e-13 Score=144.85 Aligned_cols=195 Identities=21% Similarity=0.366 Sum_probs=131.3
Q ss_pred hcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh-CCCe
Q psy8969 331 TSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL-NREY 409 (1230)
Q Consensus 331 ~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l-~~~~ 409 (1230)
.+||| +++-+-.--.|+.|.++..+|+.-+... |+ -|.|+|.|||||||||-+.++|++| |..+
T Consensus 13 ~~l~w---------VeKYrP~~l~dIVGNe~tv~rl~via~~----gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ 77 (333)
T KOG0991|consen 13 YQLPW---------VEKYRPSVLQDIVGNEDTVERLSVIAKE----GN--MPNLIISGPPGTGKTTSILCLARELLGDSY 77 (333)
T ss_pred ccchH---------HHhhCchHHHHhhCCHHHHHHHHHHHHc----CC--CCceEeeCCCCCchhhHHHHHHHHHhChhh
Confidence 36788 5555555567899999999988766532 22 2568899999999999999999986 4322
Q ss_pred ----EEEecCCcchhHHHhhccccccccCchhHHHHHHhhcC-----CCCEEEEecccccCCCCCCChhhHHHhhcChhh
Q psy8969 410 ----FRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT-----ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQ 480 (1230)
Q Consensus 410 ----~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~-----~~pvillDEIDk~~~~~~~~~~~all~~ld~~q 480 (1230)
..++.++-+ -|.-.| .-+..|.+.+. ...||+|||.|.+.. ....||...++-..
T Consensus 78 ke~vLELNASdeR---GIDvVR---------n~IK~FAQ~kv~lp~grhKIiILDEADSMT~----gAQQAlRRtMEiyS 141 (333)
T KOG0991|consen 78 KEAVLELNASDER---GIDVVR---------NKIKMFAQKKVTLPPGRHKIIILDEADSMTA----GAQQALRRTMEIYS 141 (333)
T ss_pred hhHhhhccCcccc---ccHHHH---------HHHHHHHHhhccCCCCceeEEEeeccchhhh----HHHHHHHHHHHHHc
Confidence 234443222 121111 11333443332 235999999998743 23455554443211
Q ss_pred hhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHH
Q psy8969 481 NANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSA 560 (1230)
Q Consensus 481 ~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~ 560 (1230)
+..-|++++|..+.|.+|+.+||.++.+..+++.+.+.-+... ...+.+..+++.
T Consensus 142 ---------------~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v----------~k~Ekv~yt~dg 196 (333)
T KOG0991|consen 142 ---------------NTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEV----------AKAEKVNYTDDG 196 (333)
T ss_pred ---------------ccchhhhhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHH----------HHHhCCCCCcch
Confidence 2345778889999999999999999999998887764433321 224678899999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHH
Q psy8969 561 IQVLIKNYCRESGVRNLQKHIEK 583 (1230)
Q Consensus 561 ~~~li~~~~~e~gvR~l~~~i~~ 583 (1230)
+++|| +|.++++|+.-..+..
T Consensus 197 Leaii--fta~GDMRQalNnLQs 217 (333)
T KOG0991|consen 197 LEAII--FTAQGDMRQALNNLQS 217 (333)
T ss_pred HHHhh--hhccchHHHHHHHHHH
Confidence 99998 6689999986555544
No 124
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=3.7e-13 Score=160.40 Aligned_cols=221 Identities=19% Similarity=0.289 Sum_probs=137.3
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe-------EE---EecCCcchhH
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-------FR---FSVGGMSDVA 421 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~-------~~---~~~~~~~d~~ 421 (1230)
--++++|++.+++.|..++.. ..-+..+||+|||||||||+|+++|+.+..+- .. -.+|......
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~-----~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~ 88 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRM-----GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR 88 (397)
T ss_pred cHhhccChHHHHHHHHHHHHh-----CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH
Confidence 346899999999988887752 22345699999999999999999999997631 00 0011000000
Q ss_pred HH-hhccc---cccccC---chhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhcc
Q psy8969 422 EI-KGHRR---TYVGAM---PGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYL 489 (1230)
Q Consensus 422 ~i-~g~~~---~~~g~~---~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~ 489 (1230)
.+ .|... .+-|+. -..|++..... .....||||||+|++.. ...++|++.|+.
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~----~~~~~LLk~LEe----------- 153 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI----AAFNAFLKTLEE----------- 153 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----HHHHHHHHHHhc-----------
Confidence 00 00000 011111 12233322222 12345999999999853 234556655542
Q ss_pred CccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh
Q psy8969 490 DVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC 569 (1230)
Q Consensus 490 ~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~ 569 (1230)
+ ...++||++++....|.++|++|+.++++..++.++....+.+.+ +. +.+.++++++..|++.
T Consensus 154 --p--~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~-----~~-----~g~~i~~~al~~l~~~-- 217 (397)
T PRK14955 154 --P--PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGIC-----EA-----EGISVDADALQLIGRK-- 217 (397)
T ss_pred --C--CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--
Confidence 1 135667766777889999999999999999999988877665543 22 3577899999998865
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 570 RESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 570 ~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
-.+.+|.+.+.+++++... ......-.|+.+.+.++++.
T Consensus 218 s~g~lr~a~~~L~kl~~~~-----~~~~~~~~It~~~v~~~v~~ 256 (397)
T PRK14955 218 AQGSMRDAQSILDQVIAFS-----VESEGEGSIRYDKVAELLNY 256 (397)
T ss_pred cCCCHHHHHHHHHHHHHhc-----cccCCCCccCHHHHHHHHCC
Confidence 3567888888888765321 11011225777777776653
No 125
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2e-13 Score=168.57 Aligned_cols=212 Identities=24% Similarity=0.322 Sum_probs=145.1
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe------cCCc--------
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFS------VGGM-------- 417 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~------~~~~-------- 417 (1230)
--+|++|++.+++.|..++... ..+..+||+||||||||++|+++|+.|+......+ .-|.
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~ 96 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIM 96 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHh
Confidence 3458999999999999988632 23457999999999999999999999986432111 0010
Q ss_pred ----chhHHHhhccccccccCchhHHHHHHhhcC-----CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhc
Q psy8969 418 ----SDVAEIKGHRRTYVGAMPGKVIQCMKKTKT-----ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHY 488 (1230)
Q Consensus 418 ----~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~-----~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~ 488 (1230)
.|..++...+.+-+ ..|++.+..+.. ...||||||+|.+.. ...++||..|+.-
T Consensus 97 ~g~h~Dv~e~~a~s~~gv----d~IReIie~~~~~P~~a~~KVvIIDEad~Ls~----~a~naLLKtLEeP--------- 159 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGV----DDIREIIESVRYRPVSARYKVYIIDEVHMLST----AAFNALLKTLEEP--------- 159 (598)
T ss_pred cCCCCceEEecccccCCH----HHHHHHHHHHHhchhcCCcEEEEEEChHhCCH----HHHHHHHHHHHhC---------
Confidence 01111111111111 223333333221 235999999999853 3467777776531
Q ss_pred cCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHh
Q psy8969 489 LDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568 (1230)
Q Consensus 489 ~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~ 568 (1230)
-..+.||++|+..+.|++.|++||.+|++..+..++...++.+.+ + .+.+.++++++..|++.
T Consensus 160 ------p~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~-----~-----kegi~i~~eAl~lIa~~- 222 (598)
T PRK09111 160 ------PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIA-----A-----KEGVEVEDEALALIARA- 222 (598)
T ss_pred ------CCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH-----H-----HcCCCCCHHHHHHHHHH-
Confidence 246788888888999999999999999999999999888776654 2 23567888999988865
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 569 CRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 569 ~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
.++++|.+...+++++.. +. . .||.++|.+++|.
T Consensus 223 -a~Gdlr~al~~Ldkli~~-------g~-g--~It~e~V~~llg~ 256 (598)
T PRK09111 223 -AEGSVRDGLSLLDQAIAH-------GA-G--EVTAEAVRDMLGL 256 (598)
T ss_pred -cCCCHHHHHHHHHHHHhh-------cC-C--CcCHHHHHHHhCC
Confidence 467899888888775422 11 1 4899999988874
No 126
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.46 E-value=2.5e-13 Score=158.15 Aligned_cols=164 Identities=27% Similarity=0.380 Sum_probs=114.8
Q ss_pred cHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHH
Q psy8969 344 DLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEI 423 (1230)
Q Consensus 344 ~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i 423 (1230)
.+...+..+...++|.++++..++..+. .+..++|.||||||||+||+++|+.++++|+++++..-...+++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~--------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL--------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDL 85 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH--------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHh
Confidence 3566677788889998888887766652 35678999999999999999999999999999998755555565
Q ss_pred hhccccc--------cccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcc-cc
Q psy8969 424 KGHRRTY--------VGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVP-VD 494 (1230)
Q Consensus 424 ~g~~~~~--------~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~-~d 494 (1230)
.|..--. .--.+|.+..+.. +|+|+|||++.. .+..++||++|+..|-.. . +.. +.
T Consensus 86 ~G~~~~~~~~~~~~~~~~~~gpl~~~~~------~ill~DEInra~----p~~q~aLl~~l~e~~vtv---~--~~~~~~ 150 (329)
T COG0714 86 LGTYAYAALLLEPGEFRFVPGPLFAAVR------VILLLDEINRAP----PEVQNALLEALEERQVTV---P--GLTTIR 150 (329)
T ss_pred cCchhHhhhhccCCeEEEecCCcccccc------eEEEEeccccCC----HHHHHHHHHHHhCcEEEE---C--CcCCcC
Confidence 5432111 1112333322211 589999999863 467899999998644211 1 111 33
Q ss_pred C-CceEEEEecC-----CCCCCCHhhhcccceeecCCCC-HHH
Q psy8969 495 L-SRVLFICTAN-----VIDTIPEPLRDRMEMIDVSGYV-AEE 530 (1230)
Q Consensus 495 ~-s~v~~I~TaN-----~~~~I~~~L~~R~~~i~~~~~~-~~e 530 (1230)
+ ..+++|+|.| ....+++|++|||.+...-+|+ .++
T Consensus 151 ~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 151 LPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred CCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchH
Confidence 3 3578889999 6678999999999665555666 443
No 127
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=1.3e-12 Score=152.41 Aligned_cols=212 Identities=17% Similarity=0.316 Sum_probs=134.0
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC-----CCeEEEecCCcchh--HHHhhc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN-----REYFRFSVGGMSDV--AEIKGH 426 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~-----~~~~~~~~~~~~d~--~~i~g~ 426 (1230)
++++|++.+++.+..++.. ...+.++|+||||||||++|+++|+.+. .+++.+++.+..+. ..+..+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 4688999999999888742 2234689999999999999999999984 34566665443211 011000
Q ss_pred cc--ccccc-------CchhHHHHHHhh------cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCc
Q psy8969 427 RR--TYVGA-------MPGKVIQCMKKT------KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDV 491 (1230)
Q Consensus 427 ~~--~~~g~-------~~g~i~~~~~~~------~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~ 491 (1230)
.. .+.+. ....+.+.++.. .....||||||+|.+.. +...+|+..|+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~----~~~~~L~~~le~~------------ 152 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE----DAQQALRRIMEQY------------ 152 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH----HHHHHHHHHHHhc------------
Confidence 00 01111 011122211111 12346999999998742 2344555544321
Q ss_pred cccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhh
Q psy8969 492 PVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRE 571 (1230)
Q Consensus 492 ~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e 571 (1230)
...+.||+|+|....+.++|++|+..+.+.+++.++...++.+.+ ...| +.++++++..+++.. .
T Consensus 153 ---~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~-----~~~~-----~~~~~~al~~l~~~~--~ 217 (337)
T PRK12402 153 ---SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIA-----EAEG-----VDYDDDGLELIAYYA--G 217 (337)
T ss_pred ---cCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHHHHc--C
Confidence 123456666766778889999999999999999999877776643 3333 458899999998764 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 572 SGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 572 ~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
+.+|.+...+...+ .. .. .||.+.+.+.++.
T Consensus 218 gdlr~l~~~l~~~~--------~~-~~--~It~~~v~~~~~~ 248 (337)
T PRK12402 218 GDLRKAILTLQTAA--------LA-AG--EITMEAAYEALGD 248 (337)
T ss_pred CCHHHHHHHHHHHH--------Hc-CC--CCCHHHHHHHhCC
Confidence 77888766665422 11 11 4788888877663
No 128
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.46 E-value=3.3e-14 Score=144.46 Aligned_cols=125 Identities=22% Similarity=0.390 Sum_probs=85.7
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccccc---CchhHHHHHHhhcCCCCEEEEecccc
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA---MPGKVIQCMKKTKTENPLVLIDEVDK 459 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~---~~g~i~~~~~~~~~~~pvillDEIDk 459 (1230)
.|||+||||||||++|+.+|+.++.+++.+++....+..++.|....--|. .+|.+.+++. .+.|++||||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~----~~~il~lDEin~ 76 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR----KGGILVLDEINR 76 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH----EEEEEEESSCGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc----ceeEEEECCccc
Confidence 478999999999999999999999999999999888888887765532111 2344433333 355889999998
Q ss_pred cCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC-------ceEEEEecCCCC----CCCHhhhccc
Q psy8969 460 IGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS-------RVLFICTANVID----TIPEPLRDRM 518 (1230)
Q Consensus 460 ~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s-------~v~~I~TaN~~~----~I~~~L~~R~ 518 (1230)
+. .+..+.|+.+||... +.-.......... ++.+|+|+|+.+ .+++||+|||
T Consensus 77 a~----~~v~~~L~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 77 AP----PEVLESLLSLLEERR---IQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ------HHHHHTTHHHHSSSE---EEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CC----HHHHHHHHHHHhhCc---ccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 73 345677788887532 2211111112111 489999999999 9999999998
No 129
>KOG3576|consensus
Probab=99.46 E-value=9.9e-15 Score=149.04 Aligned_cols=87 Identities=31% Similarity=0.734 Sum_probs=79.2
Q ss_pred CCCCCccCCCCCCCCCCchhhhccccccCCCCcccCCcccccccccCchhhhhhcccccCCCCEeecccccCccccchhh
Q psy8969 1132 TSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGD 1211 (1230)
Q Consensus 1132 t~~kpy~C~~CgK~F~s~s~Lk~H~R~HTGEKPykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF~~ks~ 1211 (1230)
.+...|.|.+|||.|..+.-|.+|++.|+..|.|-|. .|||.|-....|++|+|+|||-+||+|. .|+|+|+++-+
T Consensus 113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct--~cgkgfndtfdlkrh~rthtgvrpykc~--~c~kaftqrcs 188 (267)
T KOG3576|consen 113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCT--FCGKGFNDTFDLKRHTRTHTGVRPYKCS--LCEKAFTQRCS 188 (267)
T ss_pred CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHh--hccCcccchhhhhhhhccccCccccchh--hhhHHHHhhcc
Confidence 3455689999999999999999999999999999995 5999999999999999999999999994 79999999999
Q ss_pred HHHHhhhccCc
Q psy8969 1212 LQKHVRTHTDE 1222 (1230)
Q Consensus 1212 LkrH~R~HtGE 1222 (1230)
|..|.++-||.
T Consensus 189 leshl~kvhgv 199 (267)
T KOG3576|consen 189 LESHLKKVHGV 199 (267)
T ss_pred HHHHHHHHcCc
Confidence 99998865553
No 130
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.46 E-value=9.4e-13 Score=154.81 Aligned_cols=214 Identities=22% Similarity=0.322 Sum_probs=138.9
Q ss_pred hhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-E-ecC-----------
Q psy8969 349 AKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-F-SVG----------- 415 (1230)
Q Consensus 349 ~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-~-~~~----------- 415 (1230)
+...-+|+.|++++++.+.+.+.. ...+..+||+||||+|||++|+++|+.+..+-.. . .++
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~-----~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~ 83 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN-----GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSG 83 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Confidence 344456889999999999988742 2335678999999999999999999998643100 0 000
Q ss_pred CcchhHHHhhccccccccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccC
Q psy8969 416 GMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLD 490 (1230)
Q Consensus 416 ~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~ 490 (1230)
.-.+..++.+.. +.....+.+.+..+. ....||+|||+|.+.. +..++|++.|+.
T Consensus 84 ~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~----~~~~~Ll~~le~------------ 143 (355)
T TIGR02397 84 SSLDVIEIDAAS----NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK----SAFNALLKTLEE------------ 143 (355)
T ss_pred CCCCEEEeeccc----cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH----HHHHHHHHHHhC------------
Confidence 000000000000 001112223333222 2235999999998843 345666666542
Q ss_pred ccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhh
Q psy8969 491 VPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCR 570 (1230)
Q Consensus 491 ~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~ 570 (1230)
...+++||+++|.++.+.++|++|+.++.+.+++.++...++..++ ++. .+.++++++..+++..
T Consensus 144 ---~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~-----~~~-----g~~i~~~a~~~l~~~~-- 208 (355)
T TIGR02397 144 ---PPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKIL-----DKE-----GIKIEDEALELIARAA-- 208 (355)
T ss_pred ---CccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHc--
Confidence 1246788888898999999999999999999999999888877654 233 3567889998888653
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 571 ESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 571 e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
++++|.+.+.++++... .+ . .|+.+++.+.++
T Consensus 209 ~g~~~~a~~~lekl~~~------~~--~--~it~~~v~~~~~ 240 (355)
T TIGR02397 209 DGSLRDALSLLDQLISF------GN--G--NITYEDVNELLG 240 (355)
T ss_pred CCChHHHHHHHHHHHhh------cC--C--CCCHHHHHHHhC
Confidence 55678887777765532 11 1 278888877665
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.8e-13 Score=165.90 Aligned_cols=217 Identities=23% Similarity=0.297 Sum_probs=137.4
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe-EE-EecCCcchhHHHhh--cc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-FR-FSVGGMSDVAEIKG--HR 427 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~-~~-~~~~~~~d~~~i~g--~~ 427 (1230)
.-+|+.|++.+.+.+...+.. ..-+..+||+||||+|||++|+++|+.++..- .. -.++...+...+.+ +.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~-----~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~ 88 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKL-----QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFP 88 (486)
T ss_pred cHHHccChHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCC
Confidence 335789999999988888743 22345688999999999999999999987310 00 00110011111111 00
Q ss_pred ccc-c-ccC---chhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 428 RTY-V-GAM---PGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 428 ~~~-~-g~~---~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
.-+ + ++. -..++.....+. ....|+||||+|.+.. +..++||..|+.. ...
T Consensus 89 d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~----~a~naLLk~LEep---------------p~~ 149 (486)
T PRK14953 89 DLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK----EAFNALLKTLEEP---------------PPR 149 (486)
T ss_pred cEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH----HHHHHHHHHHhcC---------------CCC
Confidence 000 0 000 011222221111 2245999999998853 2456677666431 235
Q ss_pred eEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHH
Q psy8969 498 VLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNL 577 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l 577 (1230)
++||++||.++.|+++|++|+.++.+.+++.++...++.+.+ +..| +.++++++..|+.. .++++|.+
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~-----k~eg-----i~id~~al~~La~~--s~G~lr~a 217 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC-----NEEK-----IEYEEKALDLLAQA--SEGGMRDA 217 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHH-----HHcC-----CCCCHHHHHHHHHH--cCCCHHHH
Confidence 677777778889999999999999999999999877766543 3333 56788999888865 45778888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 578 QKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 578 ~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
...+++++.. +. -.||.+.+.+.+|..
T Consensus 218 l~~Ldkl~~~-------~~---~~It~~~V~~~lg~~ 244 (486)
T PRK14953 218 ASLLDQASTY-------GE---GKVTIKVVEEFLGIV 244 (486)
T ss_pred HHHHHHHHHh-------cC---CCcCHHHHHHHhCCC
Confidence 8887775421 11 147888888877743
No 132
>KOG0743|consensus
Probab=99.45 E-value=1.9e-12 Score=149.66 Aligned_cols=185 Identities=22% Similarity=0.312 Sum_probs=120.0
Q ss_pred hhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEE
Q psy8969 374 QLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL 453 (1230)
Q Consensus 374 ~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvil 453 (1230)
+..|.+--++-||||||||||||+..|+|+.|+...+-+++..+.+-++++ ...- +-.+..||+
T Consensus 228 krvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr----~LL~------------~t~~kSIiv 291 (457)
T KOG0743|consen 228 KRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLR----HLLL------------ATPNKSILL 291 (457)
T ss_pred HhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHH----HHHH------------hCCCCcEEE
Confidence 444666668899999999999999999999999999999998888866653 2222 223456999
Q ss_pred EecccccCC--CCCCC------------hhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhc--c
Q psy8969 454 IDEVDKIGK--GYSGD------------PASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRD--R 517 (1230)
Q Consensus 454 lDEIDk~~~--~~~~~------------~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~--R 517 (1230)
|..||.... ++... ..|.||..+|.- -- -.-+-=++|+|||..+.+||||++ |
T Consensus 292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl---------wS--scg~ERIivFTTNh~EkLDPALlRpGR 360 (457)
T KOG0743|consen 292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL---------WS--SCGDERIIVFTTNHKEKLDPALLRPGR 360 (457)
T ss_pred EeecccccccccccccccccccCCcceeehHHhhhhhccc---------cc--cCCCceEEEEecCChhhcCHhhcCCCc
Confidence 999997631 11111 135677666641 10 111234789999999999999999 9
Q ss_pred cce-eecCCCCHHHHHHHHHHhhcchh----HHhcCCCCCCcccCHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 518 MEM-IDVSGYVAEEKVAIAAQYLIPQA----MKESGLSPEQITLEPSAI-QVLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 518 ~~~-i~~~~~~~~e~~~i~~~~l~~~~----~~~~gl~~~~i~~~~~~~-~~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
|++ |.++-=+.+.-..++.+||--+. ..+-.--.+...+++..+ +.++.+ +......|++.++.+-++
T Consensus 361 mDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~--~~dad~~lk~Lv~~l~~~ 434 (457)
T KOG0743|consen 361 MDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKN--KNDADVALKGLVEALESK 434 (457)
T ss_pred ceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhc--cccHHHHHHHHHHHHHhh
Confidence 997 55555566777778888873321 111100123556666555 445544 214455666666654443
No 133
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.45 E-value=1.1e-12 Score=151.79 Aligned_cols=213 Identities=20% Similarity=0.325 Sum_probs=136.0
Q ss_pred hhcCCCC-CcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC
Q psy8969 330 LTSLPWG-IQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE 408 (1230)
Q Consensus 330 ~~~lpw~-~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~ 408 (1230)
+-++||- ++.+. --+|++|.+++++.+..++.. ...+.++|+||||+|||++|+++|+.+..+
T Consensus 2 ~~~~~w~~kyrP~----------~~~~~~g~~~~~~~l~~~i~~------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 2 MMEEIWVEKYRPR----------TLDEIVGQEEIVERLKSYVKE------KNMPHLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred CccCccchhhCCC----------cHHHhcCcHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3578994 44442 224688999999999998742 122458999999999999999999998432
Q ss_pred -----eEEEecCCcchhHHHhhccccccccCchhHHHHHHhh----cCCCCEEEEecccccCCCCCCChhhHHHhhcChh
Q psy8969 409 -----YFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKT----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPE 479 (1230)
Q Consensus 409 -----~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~ 479 (1230)
++.++.++......+. ..+..+... +....||+|||+|.+.. +...+|+..++..
T Consensus 66 ~~~~~~i~~~~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~~vviiDe~~~l~~----~~~~~L~~~le~~ 129 (319)
T PRK00440 66 DWRENFLELNASDERGIDVIR------------NKIKEFARTAPVGGAPFKIIFLDEADNLTS----DAQQALRRTMEMY 129 (319)
T ss_pred ccccceEEeccccccchHHHH------------HHHHHHHhcCCCCCCCceEEEEeCcccCCH----HHHHHHHHHHhcC
Confidence 3334322211100000 011111111 12245999999998742 2344555554321
Q ss_pred hhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHH
Q psy8969 480 QNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPS 559 (1230)
Q Consensus 480 q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~ 559 (1230)
..++.||+++|....+.+++.+|+.++.+.+++.++...++..++ .+. .+.++++
T Consensus 130 ---------------~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~-----~~~-----~~~i~~~ 184 (319)
T PRK00440 130 ---------------SQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIA-----ENE-----GIEITDD 184 (319)
T ss_pred ---------------CCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHH-----HHc-----CCCCCHH
Confidence 124567778888889999999999999999999999887776644 233 4568899
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 560 AIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 560 ~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
++..+++. ..+.+|.+...++..+ . . + -.||.+.+...++
T Consensus 185 al~~l~~~--~~gd~r~~~~~l~~~~----~--~-~----~~it~~~v~~~~~ 224 (319)
T PRK00440 185 ALEAIYYV--SEGDMRKAINALQAAA----A--T-G----KEVTEEAVYKITG 224 (319)
T ss_pred HHHHHHHH--cCCCHHHHHHHHHHHH----H--c-C----CCCCHHHHHHHhC
Confidence 99999875 3456777666665422 1 1 1 1467777766554
No 134
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=8.7e-13 Score=159.00 Aligned_cols=216 Identities=21% Similarity=0.277 Sum_probs=137.0
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe---cCCcchhHHHh-hcc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFS---VGGMSDVAEIK-GHR 427 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~---~~~~~d~~~i~-g~~ 427 (1230)
--+|++|++.+++.+..++... .-+..+||+||||+|||++|+++|+.+..+--.-+ .+...+...+. |..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~-----~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFN-----RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-----CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 3468999999999988887532 23467899999999999999999999864310000 00000000000 000
Q ss_pred cc---ccccCc---hhHHHHHH-----hhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 428 RT---YVGAMP---GKVIQCMK-----KTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 428 ~~---~~g~~~---g~i~~~~~-----~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
.. +-|+.. ..|++... .......||||||+|++.. ...++|+..|+. + ..
T Consensus 90 ~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----~~~n~LLk~lEe-------------p--~~ 150 (451)
T PRK06305 90 LDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----EAFNSLLKTLEE-------------P--PQ 150 (451)
T ss_pred CceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH----HHHHHHHHHhhc-------------C--CC
Confidence 00 001110 11211111 1123346999999999853 235566666543 1 13
Q ss_pred ceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 497 RVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
.++||+++|....|.++|++|+.++++..++.++...++.+.+ ++ +.+.++++++..|++. .++++|.
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~-----~~-----eg~~i~~~al~~L~~~--s~gdlr~ 218 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIA-----KQ-----EGIETSREALLPIARA--AQGSLRD 218 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHHH
Confidence 6788888888899999999999999999999999877765543 22 3566888999998865 3567888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
+...+++++.. .+ . .|+.+++.+.++.
T Consensus 219 a~~~Lekl~~~------~~--~--~It~~~V~~l~~~ 245 (451)
T PRK06305 219 AESLYDYVVGL------FP--K--SLDPDSVAKALGL 245 (451)
T ss_pred HHHHHHHHHHh------cc--C--CcCHHHHHHHHCC
Confidence 88887775421 11 1 2777777776654
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=8.4e-13 Score=162.39 Aligned_cols=216 Identities=21% Similarity=0.275 Sum_probs=142.0
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE--EEecCCcchhHHHh-h-cc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF--RFSVGGMSDVAEIK-G-HR 427 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~--~~~~~~~~d~~~i~-g-~~ 427 (1230)
--+|++|++.+++.+..++.. ..-+..+||+||||+|||++|+++|++++.+-- ...++...+...+. | +.
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~-----~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~ 88 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIES-----NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSL 88 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCC
Confidence 446899999999999888853 234567999999999999999999999975310 00011111111110 0 00
Q ss_pred c-c-ccccC---chhHHHHHHh-----hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 428 R-T-YVGAM---PGKVIQCMKK-----TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 428 ~-~-~~g~~---~g~i~~~~~~-----~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
. . +-|+. -..|++.... ......|+||||+|.+.. ...++||..|+. .-..
T Consensus 89 dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~----~a~naLLK~LEe---------------pp~~ 149 (563)
T PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN----SAFNALLKTIEE---------------PPPY 149 (563)
T ss_pred CeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH----HHHHHHHHhhcc---------------CCCC
Confidence 0 0 01111 1233333221 123456999999999853 245677776653 1247
Q ss_pred eEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHH
Q psy8969 498 VLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNL 577 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l 577 (1230)
++||++|+.+..|+++|++|+.++++..++.++...++.+.+ .+ +.+.++++++..|++. .++.+|.+
T Consensus 150 ~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~-----~~-----egi~id~eAl~lLa~~--s~GdlR~a 217 (563)
T PRK06647 150 IVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVC-----LE-----DQIKYEDEALKWIAYK--STGSVRDA 217 (563)
T ss_pred EEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHHHH
Confidence 888888888899999999999999999999998877765533 22 3567899999999876 35678988
Q ss_pred HHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 578 QKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 578 ~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
...+++++.. .+ . .|+.+.+.+.+|.
T Consensus 218 lslLdklis~------~~--~--~It~e~V~~llg~ 243 (563)
T PRK06647 218 YTLFDQVVSF------SD--S--DITLEQIRSKMGL 243 (563)
T ss_pred HHHHHHHHhh------cC--C--CCCHHHHHHHhCC
Confidence 8888876522 11 1 3777888877764
No 136
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.2e-12 Score=161.77 Aligned_cols=221 Identities=19% Similarity=0.297 Sum_probs=139.4
Q ss_pred hhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe-------EE---EecCCcchh
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-------FR---FSVGGMSDV 420 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~-------~~---~~~~~~~d~ 420 (1230)
.--++++|++.+++.|...+.. ..-+..+||+|||||||||+|+++|+.++..- .+ -.+|.....
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~-----~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC 87 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM-----DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESC 87 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHH
Confidence 3447899999999998887642 23345699999999999999999999997631 00 011111111
Q ss_pred HHH-hhcccc---ccccC---chhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhc
Q psy8969 421 AEI-KGHRRT---YVGAM---PGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHY 488 (1230)
Q Consensus 421 ~~i-~g~~~~---~~g~~---~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~ 488 (1230)
..+ .|...- +-|+. -..|++..... .....||||||+|++.. ...++||..|+.
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~----~a~naLLK~LEe---------- 153 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST----AAFNAFLKTLEE---------- 153 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----HHHHHHHHHHhC----------
Confidence 111 010000 11111 12333333222 22345999999999853 235667776653
Q ss_pred cCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHh
Q psy8969 489 LDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568 (1230)
Q Consensus 489 ~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~ 568 (1230)
+ -..++||++|+....|.++|++|+.+|++..+..++....+.+.+ +. +.+.++++++..|++.
T Consensus 154 ---P--p~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~-----~~-----egi~I~~eal~~La~~- 217 (620)
T PRK14954 154 ---P--PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMIC-----RA-----EGIQIDADALQLIARK- 217 (620)
T ss_pred ---C--CCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH-
Confidence 1 135677777777899999999999999999999988776665433 22 3566889999988865
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 569 CRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 569 ~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
-.+++|.+.+.+++++... .+....-.|+.+++.+.++
T Consensus 218 -s~Gdlr~al~eLeKL~~y~-----~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 218 -AQGSMRDAQSILDQVIAFS-----VGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred -hCCCHHHHHHHHHHHHHhc-----cccccCCccCHHHHHHHHc
Confidence 3567999988888766332 0111122467777766654
No 137
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.41 E-value=1e-12 Score=169.58 Aligned_cols=168 Identities=20% Similarity=0.314 Sum_probs=119.1
Q ss_pred HhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh----------CCCeEEEecCCc
Q psy8969 348 AAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL----------NREYFRFSVGGM 417 (1230)
Q Consensus 348 ~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l----------~~~~~~~~~~~~ 417 (1230)
|+.---++++|.++..+++++.|..+. ...++|+||||||||++|+.||..+ +.+++.++++.+
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l 245 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh
Confidence 444444579999999888888875432 2347799999999999999999998 678887777654
Q ss_pred chhHHHhhccccccccCchhHHHHHHhhc--CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKTK--TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~~--~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
.. | ..|.|....++...|.... ..++||||||||.+.....++.....-.+|-| + +..
T Consensus 246 ~a-----g--~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp---------~----l~~ 305 (857)
T PRK10865 246 VA-----G--AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKP---------A----LAR 305 (857)
T ss_pred hh-----c--cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcc---------h----hhc
Confidence 32 1 1467877778887776532 23568889999999643222211111122222 1 234
Q ss_pred CceEEEEecCCCC-----CCCHhhhcccceeecCCCCHHHHHHHHHHhhcch
Q psy8969 496 SRVLFICTANVID-----TIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQ 542 (1230)
Q Consensus 496 s~v~~I~TaN~~~-----~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~ 542 (1230)
+.+.+|+||+..+ .+++||.+||+.|.+..++.++...|++. +.++
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~-l~~~ 356 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRG-LKER 356 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHH-Hhhh
Confidence 6789998888765 58999999999999999999999998754 4443
No 138
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.40 E-value=1.9e-12 Score=149.49 Aligned_cols=234 Identities=17% Similarity=0.217 Sum_probs=132.2
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh-------CCCeEEEecCCcchhHHHhhc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL-------NREYFRFSVGGMSDVAEIKGH 426 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l-------~~~~~~~~~~~~~d~~~i~g~ 426 (1230)
.++.|++++|+.++-.+.. .....+||.||||+|||++|+++|..| +.++-..+..+..|..+..+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 4689999999987754311 112469999999999999999999999 443211111111111111000
Q ss_pred c-----c------------ccccc--------------CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhh
Q psy8969 427 R-----R------------TYVGA--------------MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEM 475 (1230)
Q Consensus 427 ~-----~------------~~~g~--------------~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ 475 (1230)
. + ..+|. .||.+ ....+.++|||||+.+. .+..++|++.
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l------~~A~~GiL~lDEInrl~----~~~q~~Lle~ 151 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLL------ARANRGYLYIDEVNLLE----DHIVDLLLDV 151 (334)
T ss_pred cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCce------EEcCCCeEEecChHhCC----HHHHHHHHHH
Confidence 0 0 01221 12322 23456799999999974 3457888988
Q ss_pred cChhhhhhhhhhccCccccCCceEEEEecCCCC-CCCHhhhcccce-eecCCCCH-HHHHHHHHHhhcch----h-----
Q psy8969 476 LDPEQNANFLDHYLDVPVDLSRVLFICTANVID-TIPEPLRDRMEM-IDVSGYVA-EEKVAIAAQYLIPQ----A----- 543 (1230)
Q Consensus 476 ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~-~I~~~L~~R~~~-i~~~~~~~-~e~~~i~~~~l~~~----~----- 543 (1230)
|+..+..--.+.. ....+ .++++|+|.|+.+ .++++|++||.+ |.+..+.. +|..+|+.+..... .
T Consensus 152 mee~~v~v~r~G~-~~~~p-~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~ 229 (334)
T PRK13407 152 AQSGENVVEREGL-SIRHP-ARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKW 229 (334)
T ss_pred HHcCCeEEEECCe-EEecC-CCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccc
Confidence 8754421001110 01122 4789999999866 699999999985 56655555 77778887643211 0
Q ss_pred ----------HHhcCCCCCCcccCHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhc
Q psy8969 544 ----------MKESGLSPEQITLEPSAIQVLIKNY--CRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 544 ----------~~~~gl~~~~i~~~~~~~~~li~~~--~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
+...--....+.++++++.++++-. ++..|.|...- +-+.++ |..++.+ .-.|+.++|....
T Consensus 230 ~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~--a~A~l~G---r~~V~~~Di~~~~ 303 (334)
T PRK13407 230 GAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAAR--ALAAFEG---AEAVGRSHLRSVA 303 (334)
T ss_pred cccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHH--HHHHHcC---CCeeCHHHHHHHH
Confidence 0000001246788888888776442 23335554433 222222 2223332 2358888886544
No 139
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=1.3e-12 Score=154.45 Aligned_cols=164 Identities=20% Similarity=0.294 Sum_probs=105.0
Q ss_pred ccccChHHHHHHHHHHHHHhhh----cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-EecCCcchhHHH-h-hc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQL----KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-FSVGGMSDVAEI-K-GH 426 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~----~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-~~~~~~~d~~~i-~-g~ 426 (1230)
++++|++++++.+...+..... .+...+..+||+||||+|||++|+++|+.+..+.-. -.+|....-..+ . .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 6799999999999999865321 112245779999999999999999999998654210 000100000000 0 01
Q ss_pred ccc-cc---ccC--chhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 427 RRT-YV---GAM--PGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 427 ~~~-~~---g~~--~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
..- ++ |.. -..|++.+..+. ....|+||||+|++.. ...++||+.|+.. -
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----~aanaLLk~LEep---------------~ 145 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----RAANALLKAVEEP---------------P 145 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH----HHHHHHHHHhhcC---------------C
Confidence 000 01 000 012333333322 1234999999999854 3467888887641 1
Q ss_pred CceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHH
Q psy8969 496 SRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 496 s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~ 536 (1230)
.+++||++|+.++.|+++++|||.++.|..++.++...++.
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHH
Confidence 35677777777999999999999999999999988765554
No 140
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=3.7e-12 Score=158.44 Aligned_cols=195 Identities=20% Similarity=0.327 Sum_probs=127.7
Q ss_pred cccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE----EecCCcchh-HHH-hhc
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR----FSVGGMSDV-AEI-KGH 426 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~----~~~~~~~d~-~~i-~g~ 426 (1230)
-++++|++.+++.|..++.... -++.+||+||||+|||++|+++|+.++..... -.+| ..+. ..+ .|.
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg-~C~~C~~i~~g~ 88 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG-KCELCRAIAAGN 88 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc-ccHHHHHHhcCC
Confidence 3579999999999988885322 24578999999999999999999999863210 0111 1110 011 010
Q ss_pred cccc--cc----cCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 427 RRTY--VG----AMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 427 ~~~~--~g----~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
...+ +. ..-..|++.+..+. ....||||||+|++.. ...++||..|+. .-
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~----~a~naLLK~LEe---------------Pp 149 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST----AAFNALLKTLEE---------------PP 149 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----HHHHHHHHHHhc---------------CC
Confidence 0000 11 11123444443332 2346999999999843 346777777663 12
Q ss_pred CceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHH
Q psy8969 496 SRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVR 575 (1230)
Q Consensus 496 s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR 575 (1230)
.+++||++||.++.|.+.|++||.+++|..++.++....+.+.. .+ +.+.++++++..|++. ..++.|
T Consensus 150 ~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia-----~k-----egi~is~~al~~La~~--s~G~lr 217 (620)
T PRK14948 150 PRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIA-----EK-----ESIEIEPEALTLVAQR--SQGGLR 217 (620)
T ss_pred cCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH-----HH-----hCCCCCHHHHHHHHHH--cCCCHH
Confidence 46788888888889999999999999999998888766554432 22 2456788888877755 356678
Q ss_pred HHHHHHHHH
Q psy8969 576 NLQKHIEKV 584 (1230)
Q Consensus 576 ~l~~~i~~i 584 (1230)
.+.+.++++
T Consensus 218 ~A~~lLekl 226 (620)
T PRK14948 218 DAESLLDQL 226 (620)
T ss_pred HHHHHHHHH
Confidence 887777764
No 141
>KOG0742|consensus
Probab=99.40 E-value=1.9e-12 Score=145.44 Aligned_cols=162 Identities=24% Similarity=0.344 Sum_probs=113.8
Q ss_pred cccChHHHHHHHHHHHHHhhh---cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccc
Q psy8969 355 DHYGMEDVKKRILEFIAVSQL---KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYV 431 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l~~~~~---~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~ 431 (1230)
+++=...+++||.... .... .+..+-+.||||||||||||++||.||+..|..|.-|..|++.- .
T Consensus 356 ~ViL~psLe~Rie~lA-~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-----------l 423 (630)
T KOG0742|consen 356 GVILHPSLEKRIEDLA-IATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-----------L 423 (630)
T ss_pred CeecCHHHHHHHHHHH-HHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-----------c
Confidence 3444566677776543 3222 23334477999999999999999999999999998888776643 1
Q ss_pred cc-CchhHHHHHHhhcCCCC--EEEEecccccCCCCC-----CChhhHHHhhcChhhhhhhhhhccCccccC-CceEEEE
Q psy8969 432 GA-MPGKVIQCMKKTKTENP--LVLIDEVDKIGKGYS-----GDPASALLEMLDPEQNANFLDHYLDVPVDL-SRVLFIC 502 (1230)
Q Consensus 432 g~-~~g~i~~~~~~~~~~~p--villDEIDk~~~~~~-----~~~~~all~~ld~~q~~~f~d~~~~~~~d~-s~v~~I~ 502 (1230)
|+ .-..|.+.|.-++..+. ++||||.|.+.-.+. .+.-++|-.+|-. .-|. ..+++++
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR-------------TGdqSrdivLvl 490 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-------------TGDQSRDIVLVL 490 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH-------------hcccccceEEEe
Confidence 22 22567888887776554 778999998863322 1222333322211 1222 3578889
Q ss_pred ecCCCCCCCHhhhcccc-eeecCCCCHHHHHHHHHHhhcc
Q psy8969 503 TANVIDTIPEPLRDRME-MIDVSGYVAEEKVAIAAQYLIP 541 (1230)
Q Consensus 503 TaN~~~~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~~l~~ 541 (1230)
+||++..+|.++-||++ +|+|+-+-.||...++..||-.
T Consensus 491 AtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 491 ATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred ccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 99999999999999997 7888888899999999888743
No 142
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=4.1e-12 Score=158.00 Aligned_cols=202 Identities=19% Similarity=0.288 Sum_probs=132.7
Q ss_pred hhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE---ecCCcchhHHHh-
Q psy8969 349 AKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF---SVGGMSDVAEIK- 424 (1230)
Q Consensus 349 ~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~---~~~~~~d~~~i~- 424 (1230)
+-..-+|++|++.+++.|..++.. ..-+..+||+||+|+|||++|+++|+.+......- .+|...+-..+.
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~-----~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~ 86 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT-----NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNE 86 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc-----CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhc
Confidence 334556899999999999988853 23456789999999999999999999986321000 001000000000
Q ss_pred h-ccc--cccccC---chhHHHHHHhhcC-----CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccc
Q psy8969 425 G-HRR--TYVGAM---PGKVIQCMKKTKT-----ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPV 493 (1230)
Q Consensus 425 g-~~~--~~~g~~---~g~i~~~~~~~~~-----~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~ 493 (1230)
+ |.. .+-|+. -..|++.+..+.. ...|+||||+|.+.. +..++||..|+.-
T Consensus 87 ~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~----~a~naLLK~LEep-------------- 148 (614)
T PRK14971 87 QRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ----AAFNAFLKTLEEP-------------- 148 (614)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH----HHHHHHHHHHhCC--------------
Confidence 0 000 000110 1123333333322 245999999999843 3466777776531
Q ss_pred cCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhh
Q psy8969 494 DLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESG 573 (1230)
Q Consensus 494 d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~g 573 (1230)
-.+++||++|+....|.++|++|+.++++..++.++...++.+.+ .+. .+.++++++..|+.. .+++
T Consensus 149 -p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia-----~~e-----gi~i~~~al~~La~~--s~gd 215 (614)
T PRK14971 149 -PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVA-----SKE-----GITAEPEALNVIAQK--ADGG 215 (614)
T ss_pred -CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHH--cCCC
Confidence 135778887888899999999999999999999999877766543 233 567888899888866 3678
Q ss_pred HHHHHHHHHHHHH
Q psy8969 574 VRNLQKHIEKVTR 586 (1230)
Q Consensus 574 vR~l~~~i~~i~r 586 (1230)
+|.+...+++++.
T Consensus 216 lr~al~~Lekl~~ 228 (614)
T PRK14971 216 MRDALSIFDQVVS 228 (614)
T ss_pred HHHHHHHHHHHHH
Confidence 8988888877653
No 143
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.39 E-value=1.3e-11 Score=136.19 Aligned_cols=195 Identities=16% Similarity=0.278 Sum_probs=126.6
Q ss_pred cChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhcccccccc
Q psy8969 357 YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGA 433 (1230)
Q Consensus 357 ~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~ 433 (1230)
.+-+.+...+.++.. +...+..++|+||||||||+||++|++.+ +.+++.++.....+. +
T Consensus 23 ~~~~~~~~~l~~~~~-----~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--~---------- 85 (227)
T PRK08903 23 GENAELVARLRELAA-----GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--F---------- 85 (227)
T ss_pred CCcHHHHHHHHHHHh-----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--H----------
Confidence 344566666666553 23445689999999999999999999976 556666665332221 0
Q ss_pred CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC---CC
Q psy8969 434 MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID---TI 510 (1230)
Q Consensus 434 ~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~---~I 510 (1230)
. ......+|+|||||.+.. +...+|+.+++..+ +....++|+|++... .+
T Consensus 86 ---------~-~~~~~~~liiDdi~~l~~----~~~~~L~~~~~~~~-------------~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 86 ---------D-FDPEAELYAVDDVERLDD----AQQIALFNLFNRVR-------------AHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred ---------h-hcccCCEEEEeChhhcCc----hHHHHHHHHHHHHH-------------HcCCcEEEEeCCCCHHhCCC
Confidence 0 112356899999998632 23445555554311 122334555555322 35
Q ss_pred CHhhhccc---ceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 511 PEPLRDRM---EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 511 ~~~L~~R~---~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
.+.|++|| ..|.++++..++...++.+. .... .+.++++++..|++. ..+.+|.|++.++.+-..
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~-----~~~~-----~v~l~~~al~~L~~~--~~gn~~~l~~~l~~l~~~ 206 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAA-----AAER-----GLQLADEVPDYLLTH--FRRDMPSLMALLDALDRY 206 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHH-----HHHc-----CCCCCHHHHHHHHHh--ccCCHHHHHHHHHHHHHH
Confidence 68899997 58899999998876666543 2232 477899999999984 577899999999986532
Q ss_pred HHHHHhhcCCCceEechhhhhhhcCCC
Q psy8969 588 VALTIVKKESDKVTVTNDNLSDFVGKP 614 (1230)
Q Consensus 588 ~~~~~~~~~~~~~~i~~~~~~~~~~~~ 614 (1230)
+.. . +..||...+.++++.|
T Consensus 207 -~~~---~---~~~i~~~~~~~~l~~~ 226 (227)
T PRK08903 207 -SLE---Q---KRPVTLPLLREMLAQP 226 (227)
T ss_pred -HHH---h---CCCCCHHHHHHHHhcc
Confidence 211 1 1257888888887654
No 144
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.4e-12 Score=148.65 Aligned_cols=211 Identities=18% Similarity=0.299 Sum_probs=135.2
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc-chhHHHhhccccc
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM-SDVAEIKGHRRTY 430 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~-~d~~~i~g~~~~~ 430 (1230)
--+|++|++.+++.+.+.+.. ...++.++|+||||+|||++|+++|+.++.+...-...+. .+..++.+ .
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~-----~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~----~ 85 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIEN-----NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA----A 85 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHc-----CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc----c
Confidence 446789999999999888753 2334689999999999999999999998753211000000 00000000 0
Q ss_pred cccCchhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecC
Q psy8969 431 VGAMPGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN 505 (1230)
Q Consensus 431 ~g~~~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN 505 (1230)
.......+.+.+..+. ....||+|||+|.+.. ...++|+..|+. ....++||+++|
T Consensus 86 ~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~----~~~~~ll~~le~---------------~~~~~~~Il~~~ 146 (367)
T PRK14970 86 SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS----AAFNAFLKTLEE---------------PPAHAIFILATT 146 (367)
T ss_pred cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH----HHHHHHHHHHhC---------------CCCceEEEEEeC
Confidence 0001123333333222 1235999999998743 224455554432 123567777788
Q ss_pred CCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 506 VIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 506 ~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
....|.+++++|+.++++.+++.++...++.+.+ .+. .+.++++++..++.. ..+++|.+...+++++
T Consensus 147 ~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~-----~~~-----g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~ 214 (367)
T PRK14970 147 EKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIA-----VKE-----GIKFEDDALHIIAQK--ADGALRDALSIFDRVV 214 (367)
T ss_pred CcccCCHHHHhcceeEecCCccHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 8899999999999999999999999877766544 233 456888999999875 3467888888888765
Q ss_pred HHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 586 RKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 586 r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
... +. . ||.+.+.+.++
T Consensus 215 ~y~------~~--~--it~~~v~~~~~ 231 (367)
T PRK14970 215 TFC------GK--N--ITRQAVTENLN 231 (367)
T ss_pred Hhc------CC--C--CCHHHHHHHhC
Confidence 321 11 1 67666666555
No 145
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.39 E-value=2.9e-13 Score=133.17 Aligned_cols=117 Identities=30% Similarity=0.432 Sum_probs=71.9
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccccc------CchhHHHHHHhhcCCCCEEEEecc
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA------MPGKVIQCMKKTKTENPLVLIDEV 457 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~------~~g~i~~~~~~~~~~~pvillDEI 457 (1230)
+||.|+||+|||++|+++|+.+|..|.||.+..-...++|.|..- |-.. .+|-| ...|+|+|||
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v-~~~~~~~f~~~~GPi---------f~~ill~DEi 71 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPV-YDQETGEFEFRPGPI---------FTNILLADEI 71 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEE-EETTTTEEEEEE-TT----------SSEEEEETG
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeee-eccCCCeeEeecChh---------hhceeeeccc
Confidence 789999999999999999999999999998764455788888732 2211 12322 2359999999
Q ss_pred cccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC-ceEEEEecCCCC-----CCCHhhhcccc
Q psy8969 458 DKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS-RVLFICTANVID-----TIPEPLRDRME 519 (1230)
Q Consensus 458 Dk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s-~v~~I~TaN~~~-----~I~~~L~~R~~ 519 (1230)
.++. ....+|||+++...|-. ..+..+.+. .+++|+|.|+.+ .+|+|++|||-
T Consensus 72 Nrap----pktQsAlLeam~Er~Vt-----~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 72 NRAP----PKTQSALLEAMEERQVT-----IDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp GGS-----HHHHHHHHHHHHHSEEE-----ETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred ccCC----HHHHHHHHHHHHcCeEE-----eCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 9864 34579999998654422 112234444 478899999987 89999999985
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.7e-12 Score=158.64 Aligned_cols=217 Identities=21% Similarity=0.312 Sum_probs=138.0
Q ss_pred hhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE--E-ecCCcchhHHHh-hc
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR--F-SVGGMSDVAEIK-GH 426 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~--~-~~~~~~d~~~i~-g~ 426 (1230)
..-+|++|++++++.|..++... ..+..+||+||||+|||++|+++|+.++...-. . .++.......+. |.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCC
Confidence 34468999999999998887532 234568999999999999999999998742210 0 011111111110 00
Q ss_pred cccc--ccc----CchhHHHHHHh-----hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 427 RRTY--VGA----MPGKVIQCMKK-----TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 427 ~~~~--~g~----~~g~i~~~~~~-----~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
...+ +.. .-..+++.... ......||||||+|.+.. +..++||..|+. + -
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----~a~naLLk~LEe-------------p--p 148 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----AAFNALLKTLEE-------------P--P 148 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH----HHHHHHHHHHhc-------------C--C
Confidence 0000 000 00112222211 112356999999998853 235566666543 1 1
Q ss_pred CceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHH
Q psy8969 496 SRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVR 575 (1230)
Q Consensus 496 s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR 575 (1230)
.+++||++++..+.|.+.|++|+.++.|..++..+...++.+.. .+ +.+.++++++..|++. .++.+|
T Consensus 149 ~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a-----~~-----egl~i~~eal~~La~~--s~Gdlr 216 (585)
T PRK14950 149 PHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIA-----AA-----EGINLEPGALEAIARA--ATGSMR 216 (585)
T ss_pred CCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHH-----HH-----cCCCCCHHHHHHHHHH--cCCCHH
Confidence 36788888888899999999999999999999998877765543 23 3456888999888865 346788
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCC
Q psy8969 576 NLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGK 613 (1230)
Q Consensus 576 ~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~ 613 (1230)
.+...|+++... .+ . .|+.+.+.++++.
T Consensus 217 ~al~~LekL~~y------~~--~--~It~e~V~~ll~~ 244 (585)
T PRK14950 217 DAENLLQQLATT------YG--G--EISLSQVQSLLGI 244 (585)
T ss_pred HHHHHHHHHHHh------cC--C--CCCHHHHHHHhcC
Confidence 888888875431 11 1 3788888777763
No 147
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.37 E-value=2.1e-11 Score=144.05 Aligned_cols=229 Identities=17% Similarity=0.219 Sum_probs=133.7
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---------CCeEEEecCCcchhHHHh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---------REYFRFSVGGMSDVAEIK 424 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---------~~~~~~~~~~~~d~~~i~ 424 (1230)
+++.|-++-.+.|..++.. .+.+ ..+..++++||||||||++++.+++.+. ..++.+++....+...+.
T Consensus 15 ~~l~gRe~e~~~l~~~l~~-~~~~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRP-ILRG-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHH-HHcC-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4688999999999998853 2233 3456789999999999999999998764 356777766554432211
Q ss_pred ----------hccccccccCchhHHHHH-Hhhc-CCCC-EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCc
Q psy8969 425 ----------GHRRTYVGAMPGKVIQCM-KKTK-TENP-LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDV 491 (1230)
Q Consensus 425 ----------g~~~~~~g~~~g~i~~~~-~~~~-~~~p-villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~ 491 (1230)
|......|.....+...+ .... ...+ ||+|||+|.+... ....|.++++-. ...
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----~~~~L~~l~~~~---------~~~ 159 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----DDDLLYQLSRAR---------SNG 159 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----CcHHHHhHhccc---------ccc
Confidence 110000011111122222 2211 2233 7889999998621 112333332210 001
Q ss_pred cccCCceEEEEecCCCC---CCCHhhhcccc--eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHH
Q psy8969 492 PVDLSRVLFICTANVID---TIPEPLRDRME--MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIK 566 (1230)
Q Consensus 492 ~~d~s~v~~I~TaN~~~---~I~~~L~~R~~--~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~ 566 (1230)
..+.+++.+|+++|.++ .+++.+.+||. .|.+.+|+.+|...|+...+ +.++. ...++++++..+.+
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~------~~~~~--~~~~~~~~l~~i~~ 231 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA------EKAFY--DGVLDDGVIPLCAA 231 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH------Hhhcc--CCCCChhHHHHHHH
Confidence 12336789999999875 68889999984 78999999999999998765 11222 23477787776654
Q ss_pred Hhhhh-hhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhc
Q psy8969 567 NYCRE-SGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 567 ~~~~e-~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
-..+. +.+|..... |+.++....... .-.|+.+++.+.+
T Consensus 232 ~~~~~~Gd~R~al~~----l~~a~~~a~~~~--~~~it~~~v~~a~ 271 (365)
T TIGR02928 232 LAAQEHGDARKAIDL----LRVAGEIAEREG--AERVTEDHVEKAQ 271 (365)
T ss_pred HHHHhcCCHHHHHHH----HHHHHHHHHHcC--CCCCCHHHHHHHH
Confidence 43332 445554443 333332111111 2247777776544
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.37 E-value=3.1e-12 Score=165.30 Aligned_cols=186 Identities=22% Similarity=0.287 Sum_probs=127.9
Q ss_pred HhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC----------CCeEEEecCCc
Q psy8969 348 AAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN----------REYFRFSVGGM 417 (1230)
Q Consensus 348 ~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~----------~~~~~~~~~~~ 417 (1230)
|++---+.++|-++..+++.+.|..+ ....++|+||||||||++|+.+|..+. .+++.++++.+
T Consensus 173 a~~~~~~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l 246 (821)
T CHL00095 173 AIDGNLDPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL 246 (821)
T ss_pred HHcCCCCCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH
Confidence 44444457999999999999988533 223578999999999999999999873 66777765433
Q ss_pred chhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEecccccCCCC--CCChhhHHHhhcChhhhhhhhhhccCcccc
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKGY--SGDPASALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~~--~~~~~~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
.. | -.|.|+...++...+..+....+ ||||||||.+.... .|+. .+..+|.| ++ .
T Consensus 247 ~a-----g--~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~--~~a~lLkp---------~l----~ 304 (821)
T CHL00095 247 LA-----G--TKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI--DAANILKP---------AL----A 304 (821)
T ss_pred hc-----c--CCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc--cHHHHhHH---------HH----h
Confidence 21 1 24677777788888877655444 77899999986432 2221 11222222 11 2
Q ss_pred CCceEEEEecCCC-----CCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHH
Q psy8969 495 LSRVLFICTANVI-----DTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKN 567 (1230)
Q Consensus 495 ~s~v~~I~TaN~~-----~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~ 567 (1230)
...+.+|++||.. ...+++|.+||+.|.+..++.+|...|++. +.++...-+++ .++++++..+++-
T Consensus 305 rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~-l~~~~e~~~~v-----~i~deal~~i~~l 376 (821)
T CHL00095 305 RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG-LRSRYEKHHNL-----SISDKALEAAAKL 376 (821)
T ss_pred CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH-HHHHHHHHcCC-----CCCHHHHHHHHHH
Confidence 3568888888864 357999999999999999999998887765 33433333433 3788888877643
No 149
>PRK06893 DNA replication initiation factor; Validated
Probab=99.37 E-value=5.4e-12 Score=139.48 Aligned_cols=181 Identities=14% Similarity=0.290 Sum_probs=115.9
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEec
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDE 456 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDE 456 (1230)
..+.++|+||||||||.|+.+||+++. .....+++..... .. ..++..+ ....+|+|||
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~-----------~~---~~~~~~~----~~~dlLilDD 99 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-----------FS---PAVLENL----EQQDLVCLDD 99 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh-----------hh---HHHHhhc----ccCCEEEEeC
Confidence 346789999999999999999999863 2222233211000 00 0111111 2346999999
Q ss_pred ccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecC-CCCCC---CHhhhcccc---eeecCCCCHH
Q psy8969 457 VDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN-VIDTI---PEPLRDRME---MIDVSGYVAE 529 (1230)
Q Consensus 457 IDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN-~~~~I---~~~L~~R~~---~i~~~~~~~~ 529 (1230)
||.+..+. .-..+|+.+++... +....++|+|+| .+..+ .+.|++|+. ++.+..+..+
T Consensus 100 i~~~~~~~--~~~~~l~~l~n~~~-------------~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 100 LQAVIGNE--EWELAIFDLFNRIK-------------EQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred hhhhcCCh--HHHHHHHHHHHHHH-------------HcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHH
Confidence 99874321 11234555554321 123344455555 45544 489999997 8899999999
Q ss_pred HHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhh
Q psy8969 530 EKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSD 609 (1230)
Q Consensus 530 e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~ 609 (1230)
++..|+++... . .++.++++++.+|++.+ +..+|.|...++.+.+ .+. ..+ -.||...+++
T Consensus 165 ~~~~iL~~~a~-----~-----~~l~l~~~v~~~L~~~~--~~d~r~l~~~l~~l~~-~~~---~~~---~~it~~~v~~ 225 (229)
T PRK06893 165 QKIIVLQRNAY-----Q-----RGIELSDEVANFLLKRL--DRDMHTLFDALDLLDK-ASL---QAQ---RKLTIPFVKE 225 (229)
T ss_pred HHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHhc--cCCHHHHHHHHHHHHH-HHH---hcC---CCCCHHHHHH
Confidence 99999877552 1 25889999999999885 4668999999998753 222 111 1377777777
Q ss_pred hcC
Q psy8969 610 FVG 612 (1230)
Q Consensus 610 ~~~ 612 (1230)
+++
T Consensus 226 ~L~ 228 (229)
T PRK06893 226 ILG 228 (229)
T ss_pred Hhc
Confidence 664
No 150
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.36 E-value=4.7e-12 Score=145.68 Aligned_cols=66 Identities=26% Similarity=0.542 Sum_probs=57.0
Q ss_pred hhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC-------CeEEEec
Q psy8969 349 AKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR-------EYFRFSV 414 (1230)
Q Consensus 349 ~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~-------~~~~~~~ 414 (1230)
...+++++||+++++++|.+|+.........+.++|+|+||||+||||||++||+.++. +++.+..
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 34567799999999999999997665544556789999999999999999999999998 8988876
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.35 E-value=4.8e-12 Score=159.99 Aligned_cols=191 Identities=20% Similarity=0.320 Sum_probs=128.4
Q ss_pred cHHH-HhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh----------CCCeEEE
Q psy8969 344 DLTQ-AAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL----------NREYFRF 412 (1230)
Q Consensus 344 ~~~~-~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l----------~~~~~~~ 412 (1230)
|++. |++---+.++|-++.-+++.+.|... ....+||+||||||||++|+.+|..+ +..++.+
T Consensus 175 ~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 175 NLNQLARVGGIDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred hHHHHHHcCCCCcCcCCCHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 4443 44444456999999999999877542 23446799999999999999999875 3333333
Q ss_pred ecCCcchhHHHhhccccccccCchhHHHHHHhhcC-CCCEEEEecccccCCCCCC-ChhhHHHhhcChhhhhhhhhhccC
Q psy8969 413 SVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT-ENPLVLIDEVDKIGKGYSG-DPASALLEMLDPEQNANFLDHYLD 490 (1230)
Q Consensus 413 ~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~-~~pvillDEIDk~~~~~~~-~~~~all~~ld~~q~~~f~d~~~~ 490 (1230)
+++. .+.| ..|.|..+.++...+..+.. .+.||||||||.+.....+ .....+..+|.| ++
T Consensus 249 ~~~~-----llaG--~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp---------~L- 311 (758)
T PRK11034 249 DIGS-----LLAG--TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP---------LL- 311 (758)
T ss_pred cHHH-----Hhcc--cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH---------HH-
Confidence 3211 1222 24778777777777765543 4568999999998643221 111122233333 11
Q ss_pred ccccCCceEEEEecCCCC-----CCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHH
Q psy8969 491 VPVDLSRVLFICTANVID-----TIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLI 565 (1230)
Q Consensus 491 ~~~d~s~v~~I~TaN~~~-----~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li 565 (1230)
....+.+|++||..+ .+|++|.+||+.|.+..++.++...|++.. .++.-.. ..+.++++++..++
T Consensus 312 ---~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~-~~~ye~~-----h~v~i~~~al~~a~ 382 (758)
T PRK11034 312 ---SSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL-KPKYEAH-----HDVRYTAKAVRAAV 382 (758)
T ss_pred ---hCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH-HHHhhhc-----cCCCcCHHHHHHHH
Confidence 235789999998753 689999999999999999999999998763 3333333 35778899988776
Q ss_pred H
Q psy8969 566 K 566 (1230)
Q Consensus 566 ~ 566 (1230)
+
T Consensus 383 ~ 383 (758)
T PRK11034 383 E 383 (758)
T ss_pred H
Confidence 4
No 152
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.35 E-value=2.1e-11 Score=134.08 Aligned_cols=195 Identities=15% Similarity=0.287 Sum_probs=125.8
Q ss_pred ChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcchhHHHhhccccccccC
Q psy8969 358 GMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSDVAEIKGHRRTYVGAM 434 (1230)
Q Consensus 358 G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d~~~i~g~~~~~~g~~ 434 (1230)
+.+.+.+++.+++. ...+..++|+||||||||++|+++++.+. .+++.+++..+.+..
T Consensus 21 ~~~~~~~~l~~~~~------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAA------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------------- 81 (226)
T ss_pred CcHHHHHHHHHHHh------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-------------
Confidence 56777777777753 23467899999999999999999999874 567777654443210
Q ss_pred chhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCC-CCCC--C
Q psy8969 435 PGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANV-IDTI--P 511 (1230)
Q Consensus 435 ~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~-~~~I--~ 511 (1230)
..+...+ ....+|+|||||.+... .+....|..+++... +... .+|+|+|. +..+ .
T Consensus 82 -~~~~~~~----~~~~lLvIDdi~~l~~~--~~~~~~L~~~l~~~~-------------~~~~-~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 82 -PEVLEGL----EQADLVCLDDVEAIAGQ--PEWQEALFHLYNRVR-------------EAGG-RLLIAGRAAPAQLPLR 140 (226)
T ss_pred -HHHHhhc----ccCCEEEEeChhhhcCC--hHHHHHHHHHHHHHH-------------HcCC-eEEEECCCChHHCCcc
Confidence 0111111 23469999999987431 111445555543211 1112 35555653 3332 2
Q ss_pred -Hhhhcccc---eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 512 -EPLRDRME---MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 512 -~~L~~R~~---~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
+.|++|+. .|.+++++.+|...+++.++ ... .+.++++++..|++ + -.+++|.|++.++.+-..
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~-----~~~-----~~~~~~~~l~~L~~-~-~~gn~r~L~~~l~~~~~~ 208 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRA-----ARR-----GLQLPDEVADYLLR-H-GSRDMGSLMALLDALDRA 208 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHH-h-ccCCHHHHHHHHHHHHHH
Confidence 78999985 78999999999988886643 122 46789999999988 4 577899999999886642
Q ss_pred HHHHHhhcCCCceEechhhhhhhc
Q psy8969 588 VALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 588 ~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
+.. .+ ..|+.+.+.+++
T Consensus 209 -~~~---~~---~~i~~~~~~~~~ 225 (226)
T TIGR03420 209 -SLA---AK---RKITIPFVKEVL 225 (226)
T ss_pred -HHH---hC---CCCCHHHHHHHh
Confidence 221 11 247777766654
No 153
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.35 E-value=2.8e-11 Score=148.71 Aligned_cols=231 Identities=18% Similarity=0.253 Sum_probs=142.6
Q ss_pred HHHHhhhhcccc-----cChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC----------CCe
Q psy8969 345 LTQAAKILDDDH-----YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN----------REY 409 (1230)
Q Consensus 345 ~~~~~~~l~~d~-----~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~----------~~~ 409 (1230)
...|+++|+.++ .|=++=.++|..+|.- .+.+...+.+|.++||||||||++++.+.+.|. ..+
T Consensus 741 ~~~A~rvL~~DYVPD~LPhREeEIeeLasfL~p-aIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~v 819 (1164)
T PTZ00112 741 TDKAIRMMQLDVVPKYLPCREKEIKEVHGFLES-GIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNV 819 (1164)
T ss_pred HHHHHHHcCcccCCCcCCChHHHHHHHHHHHHH-HHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceE
Confidence 567788887764 4667777778888743 344444556678999999999999999988762 345
Q ss_pred EEEecCCcchhHHHh-hccccccccCc------hhHHH-HHHhh---cCCCCEEEEecccccCCCCCCChhhHHHhhcCh
Q psy8969 410 FRFSVGGMSDVAEIK-GHRRTYVGAMP------GKVIQ-CMKKT---KTENPLVLIDEVDKIGKGYSGDPASALLEMLDP 478 (1230)
Q Consensus 410 ~~~~~~~~~d~~~i~-g~~~~~~g~~~------g~i~~-~~~~~---~~~~pvillDEIDk~~~~~~~~~~~all~~ld~ 478 (1230)
+.+++..+.+...+. -..+...|..| ..+.. .|... .....||+|||||.+... ...+|+.+++.
T Consensus 820 VYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK----~QDVLYnLFR~ 895 (1164)
T PTZ00112 820 FEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK----TQKVLFTLFDW 895 (1164)
T ss_pred EEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----HHHHHHHHHHH
Confidence 667765544432210 00011112222 12222 22222 112238889999998652 23556666542
Q ss_pred hhhhhhhhhccCccccCCceEEEEecCCC---CCCCHhhhcccce--eecCCCCHHHHHHHHHHhhcchhHHhcCCCCCC
Q psy8969 479 EQNANFLDHYLDVPVDLSRVLFICTANVI---DTIPEPLRDRMEM--IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQ 553 (1230)
Q Consensus 479 ~q~~~f~d~~~~~~~d~s~v~~I~TaN~~---~~I~~~L~~R~~~--i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~ 553 (1230)
.. ..-++++||+.+|.. +.+++.|++||.. |.|.+|+.+|...|+...+-. . .
T Consensus 896 ~~------------~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~-------A---~ 953 (1164)
T PTZ00112 896 PT------------KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN-------C---K 953 (1164)
T ss_pred hh------------ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh-------C---C
Confidence 11 123679999999964 4677889999864 899999999999999876521 1 2
Q ss_pred cccCHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhc
Q psy8969 554 ITLEPSAIQVLIKNYCRE-SGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 554 i~~~~~~~~~li~~~~~e-~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
..++++++..+++..++. +++|..-. +||.++. +. .. -.|+.+.+.+.+
T Consensus 954 gVLdDdAIELIArkVAq~SGDARKALD----ILRrAgE-ik--eg--skVT~eHVrkAl 1003 (1164)
T PTZ00112 954 EIIDHTAIQLCARKVANVSGDIRKALQ----ICRKAFE-NK--RG--QKIVPRDITEAT 1003 (1164)
T ss_pred CCCCHHHHHHHHHhhhhcCCHHHHHHH----HHHHHHh-hc--CC--CccCHHHHHHHH
Confidence 358999999888755543 55665543 3443332 21 11 156777776655
No 154
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.33 E-value=7.2e-12 Score=144.96 Aligned_cols=232 Identities=17% Similarity=0.260 Sum_probs=131.4
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC-------CeE----------------
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR-------EYF---------------- 410 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~-------~~~---------------- 410 (1230)
.++.||+++|..++-.+.. ++..+++|.||+|||||++||++++.+.. ||.
T Consensus 17 ~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~ 90 (350)
T CHL00081 17 TAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREA 90 (350)
T ss_pred HHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhh
Confidence 4789999999988776532 22346889999999999999999888742 221
Q ss_pred -----------------EEecCCcchhHHHhh---cccccccc----CchhHHHHHHhhcCCCCEEEEecccccCCCCCC
Q psy8969 411 -----------------RFSVGGMSDVAEIKG---HRRTYVGA----MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSG 466 (1230)
Q Consensus 411 -----------------~~~~~~~~d~~~i~g---~~~~~~g~----~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~ 466 (1230)
++-.+ +.+ ..+.| +...+-|. .+|.+ ....+.++|||||+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~lp~~-~te-d~l~G~iD~~~al~~g~~~~~~GlL------~~A~~GiL~lDEInrL~~---- 158 (350)
T CHL00081 91 IQNGETIETEKIKIPMVDLPLG-ATE-DRVCGTIDIEKALTEGVKAFEPGLL------AKANRGILYVDEVNLLDD---- 158 (350)
T ss_pred hcccccccceeccccceecCCC-Cch-hhccCcccHHHHhhcCcccccCCee------eecCCCEEEecChHhCCH----
Confidence 11110 010 01101 00000011 12322 234568999999999843
Q ss_pred ChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC-CCCHhhhccccee-ecCCCC-HHHHHHHHHHhhc---
Q psy8969 467 DPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID-TIPEPLRDRMEMI-DVSGYV-AEEKVAIAAQYLI--- 540 (1230)
Q Consensus 467 ~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~-~I~~~L~~R~~~i-~~~~~~-~~e~~~i~~~~l~--- 540 (1230)
...++|++.|+..++.--.+.. ....+ .++++|+|.|+.+ .++++|++||.+. .+..+. .++..+|+++.+.
T Consensus 159 ~~Q~~LLeam~e~~~~ier~G~-s~~~p-~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~ 236 (350)
T CHL00081 159 HLVDILLDSAASGWNTVEREGI-SIRHP-ARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDK 236 (350)
T ss_pred HHHHHHHHHHHhCCeEEeeCCe-eeecC-CCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhcccc
Confidence 4577888888754322111111 11222 3789999999876 7999999999964 555444 3666777776432
Q ss_pred -chh----------------HHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEec
Q psy8969 541 -PQA----------------MKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVT 603 (1230)
Q Consensus 541 -~~~----------------~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~ 603 (1230)
|.. +.... ....+.++++++.+|++ .+...|+-..|-.|.-+-...|...+.+. -.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~I~~ar~-~~~~V~v~~~~~~yi~~-l~~~~~~~s~Ra~i~l~raArA~Aal~GR---~~V~ 311 (350)
T CHL00081 237 NPQEFREKYEESQEELRSKIVAAQN-LLPKVEIDYDLRVKISQ-ICSELDVDGLRGDIVTNRAAKALAAFEGR---TEVT 311 (350)
T ss_pred ChhhhhhhhccccccCHHHHHHHHH-hcCCCccCHHHHHHHHH-HHHHHCCCCChHHHHHHHHHHHHHHHcCC---CCCC
Confidence 110 00000 12467888888877763 34444433333333332222333334333 2477
Q ss_pred hhhhhhh
Q psy8969 604 NDNLSDF 610 (1230)
Q Consensus 604 ~~~~~~~ 610 (1230)
+++|...
T Consensus 312 pdDv~~~ 318 (350)
T CHL00081 312 PKDIFKV 318 (350)
T ss_pred HHHHHHH
Confidence 7777653
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.33 E-value=8e-12 Score=161.96 Aligned_cols=186 Identities=19% Similarity=0.290 Sum_probs=124.1
Q ss_pred HhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh----------CCCeEEEecCCc
Q psy8969 348 AAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL----------NREYFRFSVGGM 417 (1230)
Q Consensus 348 ~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l----------~~~~~~~~~~~~ 417 (1230)
|+.---+.++|.++..+++++.|... ....++|+||||||||++|+.+|..+ +.+++.++++.+
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 44433347999999988888877532 22346799999999999999999986 566777765443
Q ss_pred chhHHHhhccccccccCchhHHHHHHhhcC--CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 418 SDVAEIKGHRRTYVGAMPGKVIQCMKKTKT--ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~--~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
.. | ..|.|....++...|..+.. .+.||||||||.+.....++......++|-|. ...
T Consensus 241 ~a-----~--~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~-------------l~~ 300 (852)
T TIGR03346 241 IA-----G--AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA-------------LAR 300 (852)
T ss_pred hh-----c--chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh-------------hhc
Confidence 22 1 14667777778888876543 35688899999986422221111122333331 123
Q ss_pred CceEEEEecCCC-----CCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHH
Q psy8969 496 SRVLFICTANVI-----DTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLI 565 (1230)
Q Consensus 496 s~v~~I~TaN~~-----~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li 565 (1230)
..+.+|++||.. ..+|++|.+||..|.+..++.++...|++. +.++.-..++ +.++++++..++
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~-~~~~~e~~~~-----v~~~d~~i~~~~ 369 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRG-LKERYEVHHG-----VRITDPAIVAAA 369 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHH-HHHHhccccC-----CCCCHHHHHHHH
Confidence 578889888865 468999999999999999999999988754 3344333333 444555555444
No 156
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.4e-12 Score=146.74 Aligned_cols=114 Identities=27% Similarity=0.419 Sum_probs=95.0
Q ss_pred cccccccCCCCcccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecC
Q psy8969 651 DNLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVG 730 (1230)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iG 730 (1230)
+.+++..+.+.+..|.+ ..+.. |+.-+.|+|-+|++.||+|.+.|+|++++.++-|||.|.|.|.||-
T Consensus 341 AVLek~~gl~l~~~Dvy-vnvaG-----------G~ki~EPAaDLAva~Al~SS~~~~~lp~~~v~~GEvgL~GeIR~V~ 408 (456)
T COG1066 341 AVLEKRLGLPLGDQDVY-VNVAG-----------GVKVTEPAADLAVALALVSSFRNRPLPQDTVVFGEVGLSGEIRPVP 408 (456)
T ss_pred HHHHHhcCCcccCccEE-EEccC-----------CEecCCchHHHHHHHHHHHHhcCCCCCCCeEEEEeeccCceeeecC
Confidence 55666666666655543 33333 4788999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHcCcceeecCccccccccCchhhHhhccceecccchhhhhhccc
Q psy8969 731 GIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVF 784 (1230)
Q Consensus 731 G~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ia~ 784 (1230)
.+.+.+-.|.+.|.+++|+|..|.. ...+++++.++...+.++.++
T Consensus 409 ~~~~RlkEA~klGFk~aivP~~~~~--------~~~~~~~~~v~~l~~a~~~~~ 454 (456)
T COG1066 409 RGERRLKEAAKLGFKRAIVPKGNIP--------LPEGIKVIGVSTLAEALEVVF 454 (456)
T ss_pred cHHHHHHHHHHcCCCEEEccCCcCC--------CCCCceEEEechHHHHHHHHh
Confidence 9999999999999999999999976 235677777888877776554
No 157
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=148.58 Aligned_cols=190 Identities=16% Similarity=0.279 Sum_probs=122.9
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEeccc
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVD 458 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEID 458 (1230)
..++||||||+|||.|+++||..+ +.+++.++...+.+ ++ +.+....-.+.|+..-...+|++||||+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~--~~-------~~~l~~~~~~~f~~~~~~~dvLiIDDiq 212 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE--HL-------VSAIRSGEMQRFRQFYRNVDALFIEDIE 212 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH--HH-------HHHHhcchHHHHHHHcccCCEEEEcchh
Confidence 468899999999999999999987 45666665433222 11 1111011123444444567899999999
Q ss_pred ccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCC-C---CCCCHhhhcccc---eeecCCCCHHHH
Q psy8969 459 KIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANV-I---DTIPEPLRDRME---MIDVSGYVAEEK 531 (1230)
Q Consensus 459 k~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~-~---~~I~~~L~~R~~---~i~~~~~~~~e~ 531 (1230)
.+.... .....|+.+++.- .+... .+|+|+|. + ..+++.|++||. ++.+.+++.++.
T Consensus 213 ~l~~k~--~~qeelf~l~N~l-------------~~~~k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r 276 (445)
T PRK12422 213 VFSGKG--ATQEEFFHTFNSL-------------HTEGK-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGL 276 (445)
T ss_pred hhcCCh--hhHHHHHHHHHHH-------------HHCCC-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHH
Confidence 874311 1122333332210 11223 34455554 3 467899999994 789999999999
Q ss_pred HHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhc
Q psy8969 532 VAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 532 ~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
..|+++..- . ..+.++++++..|+.++. .++|.|+..+..++...|..-+.+. .||.+.+++++
T Consensus 277 ~~iL~~k~~-----~-----~~~~l~~evl~~la~~~~--~dir~L~g~l~~l~~~~a~~~~~~~----~i~~~~~~~~l 340 (445)
T PRK12422 277 RSFLERKAE-----A-----LSIRIEETALDFLIEALS--SNVKSLLHALTLLAKRVAYKKLSHQ----LLYVDDIKALL 340 (445)
T ss_pred HHHHHHHHH-----H-----cCCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhCC----CCCHHHHHHHH
Confidence 998877552 2 247899999999999865 6899999999999766555444332 25666666655
Q ss_pred C
Q psy8969 612 G 612 (1230)
Q Consensus 612 ~ 612 (1230)
+
T Consensus 341 ~ 341 (445)
T PRK12422 341 H 341 (445)
T ss_pred H
Confidence 4
No 158
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=6.3e-11 Score=141.49 Aligned_cols=230 Identities=18% Similarity=0.245 Sum_probs=136.6
Q ss_pred cccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh-----CCCeEEEecCCcchhHH-----
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL-----NREYFRFSVGGMSDVAE----- 422 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l-----~~~~~~~~~~~~~d~~~----- 422 (1230)
-+..+|=++-.+.|..++.- ...+ ..+..++++||||+|||++++.+++.+ +..++.+++....+...
T Consensus 29 P~~l~~Re~e~~~l~~~l~~-~~~~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 29 PENLPHREEQIEELAFALRP-ALRG-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHH-HhCC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 35677888888888888743 2222 345678999999999999999999987 46678887765443222
Q ss_pred ---HhhccccccccCchhHHHHHHhh-c--CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 423 ---IKGHRRTYVGAMPGKVIQCMKKT-K--TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 423 ---i~g~~~~~~g~~~g~i~~~~~~~-~--~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
+.+......|.....+.+.+... . ....||+|||+|.+......+....|+..++. .+.+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~--------------~~~~ 172 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE--------------YPGA 172 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc--------------cCCC
Confidence 11111111121122233333222 1 12347889999998622222222333322211 1224
Q ss_pred ceEEEEecCCCC---CCCHhhhccc--ceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhh
Q psy8969 497 RVLFICTANVID---TIPEPLRDRM--EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRE 571 (1230)
Q Consensus 497 ~v~~I~TaN~~~---~I~~~L~~R~--~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e 571 (1230)
++.+|+++|..+ .+++.+.+|+ ..|.+.+|+.++...|+...+ +.++. ...++++++..+.+...++
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~------~~~~~--~~~~~~~~l~~i~~~~~~~ 244 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV------EEGFY--PGVVDDEVLDLIADLTARE 244 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH------Hhhcc--cCCCCHhHHHHHHHHHHHh
Confidence 788898888764 5778888887 478999999999999988765 22332 2347889988887766553
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 572 -SGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 572 -~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
+++|.+-. +++.++. .+... ..-.|+.+++...+.
T Consensus 245 ~Gd~r~a~~----ll~~a~~-~a~~~-~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 245 HGDARVAID----LLRRAGL-IAERE-GSRKVTEEDVRKAYE 280 (394)
T ss_pred cCcHHHHHH----HHHHHHH-HHHHc-CCCCcCHHHHHHHHH
Confidence 33444433 3333322 22211 123577777766554
No 159
>PRK06620 hypothetical protein; Validated
Probab=99.30 E-value=3.1e-11 Score=131.94 Aligned_cols=204 Identities=14% Similarity=0.157 Sum_probs=124.6
Q ss_pred hhcCCCC-CcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC
Q psy8969 330 LTSLPWG-IQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE 408 (1230)
Q Consensus 330 ~~~lpw~-~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~ 408 (1230)
++++||+ .++-|++-...+ .+.+...+.++... + ......+.++||||||+|||+|++++|+..+..
T Consensus 4 ~l~~~~~~~~tfd~Fvvg~~----------N~~a~~~~~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 71 (214)
T PRK06620 4 IFRFTTSSKYHPDEFIVSSS----------NDQAYNIIKNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAY 71 (214)
T ss_pred ccCCCCCCCCCchhhEeccc----------HHHHHHHHHHHHHc-c-ccCCCcceEEEECCCCCCHHHHHHHHHhccCCE
Confidence 4678887 345555543332 13344444444321 1 111112568999999999999999999998764
Q ss_pred eEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhc
Q psy8969 409 YFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHY 488 (1230)
Q Consensus 409 ~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~ 488 (1230)
|+. ..... . +.+ ....+++|||||.+. ..+|..+++
T Consensus 72 ~~~--~~~~~----------------~----~~~----~~~d~lliDdi~~~~-------~~~lf~l~N----------- 107 (214)
T PRK06620 72 IIK--DIFFN----------------E----EIL----EKYNAFIIEDIENWQ-------EPALLHIFN----------- 107 (214)
T ss_pred Ecc--hhhhc----------------h----hHH----hcCCEEEEeccccch-------HHHHHHHHH-----------
Confidence 422 00000 0 000 124689999999531 123333332
Q ss_pred cCccccCCceEEEEecCCCC--CCCHhhhcccc---eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHH
Q psy8969 489 LDVPVDLSRVLFICTANVID--TIPEPLRDRME---MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQV 563 (1230)
Q Consensus 489 ~~~~~d~s~v~~I~TaN~~~--~I~~~L~~R~~---~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~ 563 (1230)
.-.+....++|+++..+. .+ +.|++|+. ++.+..+..+++..++++... + .++.++++++.+
T Consensus 108 --~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~-----~-----~~l~l~~ev~~~ 174 (214)
T PRK06620 108 --IINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFS-----I-----SSVTISRQIIDF 174 (214)
T ss_pred --HHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH-----H-----cCCCCCHHHHHH
Confidence 222334556665544333 36 89999999 899999999998888777542 2 357899999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhc
Q psy8969 564 LIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 564 li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
|++.. ...+|.|+..++.+.+. +.. .+ ..||...+.+++
T Consensus 175 L~~~~--~~d~r~l~~~l~~l~~~-~~~--~~----~~it~~~~~~~l 213 (214)
T PRK06620 175 LLVNL--PREYSKIIEILENINYF-ALI--SK----RKITISLVKEVL 213 (214)
T ss_pred HHHHc--cCCHHHHHHHHHHHHHH-HHH--cC----CCCCHHHHHHHh
Confidence 99985 56689999999986432 221 11 136666666544
No 160
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.30 E-value=1.9e-11 Score=145.13 Aligned_cols=175 Identities=18% Similarity=0.231 Sum_probs=104.6
Q ss_pred HHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC--CeEEEecCCcchhHH
Q psy8969 345 LTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR--EYFRFSVGGMSDVAE 422 (1230)
Q Consensus 345 ~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~--~~~~~~~~~~~d~~~ 422 (1230)
+.+....|.+.++|.+++.+.++..+ ..+..+||+||||||||++|++||..++. +|..+...- ....+
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aa--------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~f-ttp~D 81 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAA--------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEE 81 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHH--------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeee-cCcHH
Confidence 67788889999999999999887766 24567889999999999999999999865 444333221 11235
Q ss_pred HhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEE
Q psy8969 423 IKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502 (1230)
Q Consensus 423 i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~ 502 (1230)
+.|.-..+.....|.........-....++|||||.++++ ...++||++|+..+ |.. -+....+..-+|++
T Consensus 82 LfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp----~~QsaLLeam~Er~---~t~--g~~~~~lp~rfiv~ 152 (498)
T PRK13531 82 VFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP----AILNTLLTAINERR---FRN--GAHEEKIPMRLLVT 152 (498)
T ss_pred hcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCH----HHHHHHHHHHHhCe---Eec--CCeEEeCCCcEEEE
Confidence 5443211110001111100000001234899999997643 46789999986543 222 12333444445555
Q ss_pred ecCCCCC---CCHhhhcccce-eecCCCCH-HHHHHHHHH
Q psy8969 503 TANVIDT---IPEPLRDRMEM-IDVSGYVA-EEKVAIAAQ 537 (1230)
Q Consensus 503 TaN~~~~---I~~~L~~R~~~-i~~~~~~~-~e~~~i~~~ 537 (1230)
|+|.+.. ..++|+|||.+ |.++.+.. ++-..++..
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 5685432 22499999964 45555543 443556544
No 161
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=3.2e-11 Score=133.86 Aligned_cols=180 Identities=15% Similarity=0.230 Sum_probs=114.2
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCC---eEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNRE---YFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEV 457 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~---~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEI 457 (1230)
++.++|+||||||||.|+.++|+.+... ...+++..... +. ..+++.+. ..++|+||||
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~----------~~----~~~~~~~~----~~dlliiDdi 106 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW----------FV----PEVLEGME----QLSLVCIDNI 106 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh----------hh----HHHHHHhh----hCCEEEEeCh
Confidence 3579999999999999999999987532 22233211000 00 12222222 2368999999
Q ss_pred cccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCce-EEEEecCCCCC---CCHhhhccc---ceeecCCCCHHH
Q psy8969 458 DKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRV-LFICTANVIDT---IPEPLRDRM---EMIDVSGYVAEE 530 (1230)
Q Consensus 458 Dk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v-~~I~TaN~~~~---I~~~L~~R~---~~i~~~~~~~~e 530 (1230)
+.+..+ .....+|..+++.. .+..++ +++++.+.+.. +.+.|++|+ -++.+.+++.++
T Consensus 107 ~~~~~~--~~~~~~lf~l~n~~-------------~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 107 ECIAGD--ELWEMAIFDLYNRI-------------LESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEE 171 (235)
T ss_pred hhhcCC--HHHHHHHHHHHHHH-------------HHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHH
Confidence 987432 11233444444331 222343 44555556554 689999999 689999999999
Q ss_pred HHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhh
Q psy8969 531 KVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDF 610 (1230)
Q Consensus 531 ~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~ 610 (1230)
+..++++.. ... .+.++++++.+|++++ +..+|.|+..++.+.+ .+. ..+ ..||...+.++
T Consensus 172 ~~~~l~~~a-----~~~-----~~~l~~~v~~~L~~~~--~~d~r~l~~~l~~l~~-~~l--~~~----~~it~~~~k~~ 232 (235)
T PRK08084 172 KLQALQLRA-----RLR-----GFELPEDVGRFLLKRL--DREMRTLFMTLDQLDR-ASI--TAQ----RKLTIPFVKEI 232 (235)
T ss_pred HHHHHHHHH-----HHc-----CCCCCHHHHHHHHHhh--cCCHHHHHHHHHHHHH-HHH--hcC----CCCCHHHHHHH
Confidence 999886633 122 4789999999999985 5568999999888642 221 111 13777777666
Q ss_pred cC
Q psy8969 611 VG 612 (1230)
Q Consensus 611 ~~ 612 (1230)
++
T Consensus 233 l~ 234 (235)
T PRK08084 233 LK 234 (235)
T ss_pred Hc
Confidence 53
No 162
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.30 E-value=1.7e-11 Score=141.98 Aligned_cols=231 Identities=16% Similarity=0.221 Sum_probs=128.1
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh-------CCCeEE--EecCCcchhHHHh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL-------NREYFR--FSVGGMSDVAEIK 424 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l-------~~~~~~--~~~~~~~d~~~i~ 424 (1230)
..+.|++++|..++-.+. .+....++|.||||+|||+|+++||..+ +.+|-- -.--.+.+...++
T Consensus 4 ~~ivgq~~~~~al~~~~~------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 77 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVI------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIR 77 (337)
T ss_pred cccccHHHHHHHHHHHhc------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhh
Confidence 358999999998765442 1234568899999999999999999988 333320 0000000000000
Q ss_pred hc----------------------ccccccc--------------CchhHHHHHHhhcCCCCEEEEecccccCCCCCCCh
Q psy8969 425 GH----------------------RRTYVGA--------------MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDP 468 (1230)
Q Consensus 425 g~----------------------~~~~~g~--------------~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~ 468 (1230)
.- ...++|. .+|.+ ....+.++|||||+.+.. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL------~~A~~GvL~lDEi~~L~~----~~ 147 (337)
T TIGR02030 78 VDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLL------ARANRGILYIDEVNLLED----HL 147 (337)
T ss_pred hhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcc------eeccCCEEEecChHhCCH----HH
Confidence 00 0001111 12211 234568999999999743 45
Q ss_pred hhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC-CCCHhhhccccee-ecCCCCH-HHHHHHHHHhhc-----
Q psy8969 469 ASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID-TIPEPLRDRMEMI-DVSGYVA-EEKVAIAAQYLI----- 540 (1230)
Q Consensus 469 ~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~-~I~~~L~~R~~~i-~~~~~~~-~e~~~i~~~~l~----- 540 (1230)
.++|+++|+..+..-..+.. ....+ .++++|+|.|..+ .++++|++||.+. .+..+.. ++..+|+++...
T Consensus 148 Q~~Ll~~l~~g~~~v~r~G~-~~~~~-~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~ 225 (337)
T TIGR02030 148 VDVLLDVAASGWNVVEREGI-SIRHP-ARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADP 225 (337)
T ss_pred HHHHHHHHHhCCeEEEECCE-EEEcC-CCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCc
Confidence 78899988754321111111 11223 4789999999866 7999999999974 4544443 677777776321
Q ss_pred --------------chh-HHhcCCCCCCcccCHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEec
Q psy8969 541 --------------PQA-MKESGLSPEQITLEPSAIQVLIKNYC--RESGVRNLQKHIEKVTRKVALTIVKKESDKVTVT 603 (1230)
Q Consensus 541 --------------~~~-~~~~gl~~~~i~~~~~~~~~li~~~~--~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~ 603 (1230)
++. +.... ....+.++++++.++++-.. +..|-|.. |.-+-...|...+.+. -.|+
T Consensus 226 ~~~~~~~~~e~~~~~~~I~~a~~-~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~---i~l~raArA~Aal~GR---~~V~ 298 (337)
T TIGR02030 226 HAFCEKWQTEQEALQAKIVNAQN-LLPQVTIPYDVLVKVAELCAELDVDGLRGE---LTLNRAAKALAAFEGR---TEVT 298 (337)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHH-HhccCcCCHHHHHHHHHHHHHHCCCCCcHH---HHHHHHHHHHHHHcCC---CCCC
Confidence 011 11111 12467788888888775432 22234443 2222222233333332 3577
Q ss_pred hhhhhh
Q psy8969 604 NDNLSD 609 (1230)
Q Consensus 604 ~~~~~~ 609 (1230)
.++|..
T Consensus 299 ~dDv~~ 304 (337)
T TIGR02030 299 VDDIRR 304 (337)
T ss_pred HHHHHH
Confidence 777764
No 163
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.27 E-value=1.4e-11 Score=142.83 Aligned_cols=147 Identities=27% Similarity=0.379 Sum_probs=102.3
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC------------------------CCe
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN------------------------REY 409 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~------------------------~~~ 409 (1230)
++++|.+.+..++..++.... .-+..+||+||||+|||++|.++|+.++ -.|
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 76 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDF 76 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCce
Confidence 468899999999988874222 1223599999999999999999999998 456
Q ss_pred EEEecCCcchhHHHhhccccccccCchhHHHHHHhhc--CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhh
Q psy8969 410 FRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK--TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDH 487 (1230)
Q Consensus 410 ~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~--~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~ 487 (1230)
+.++.++.....- +-+.-+.+.+.+.... ....||||||+|++.. |..+||+..++.
T Consensus 77 lel~~s~~~~~~i--------~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~----~A~nallk~lEe--------- 135 (325)
T COG0470 77 LELNPSDLRKIDI--------IVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE----DAANALLKTLEE--------- 135 (325)
T ss_pred EEecccccCCCcc--------hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH----HHHHHHHHHhcc---------
Confidence 6666555443110 0000011111111111 2345999999999854 678888887753
Q ss_pred ccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHH
Q psy8969 488 YLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEK 531 (1230)
Q Consensus 488 ~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~ 531 (1230)
...+..||++||.+..|.+++++||.+|.|.+....+.
T Consensus 136 ------p~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 136 ------PPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred ------CCCCeEEEEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 23578999999999999999999999999988444443
No 164
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.27 E-value=3.1e-11 Score=151.62 Aligned_cols=231 Identities=22% Similarity=0.292 Sum_probs=132.4
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh----------------------------
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---------------------------- 405 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---------------------------- 405 (1230)
.+++|++.+|..++-.+. .+ ...+|||.||||||||++|++|+..+
T Consensus 4 ~~ivGq~~~~~al~~~av----~~--~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~ 77 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAV----DP--RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRK 77 (633)
T ss_pred chhcChHHHHHHHHHHhh----CC--CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhc
Confidence 479999999977654432 11 22359999999999999999999998
Q ss_pred -------CCCeEEEecCCcchhHHHhhcc---ccc-cc---cCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhH
Q psy8969 406 -------NREYFRFSVGGMSDVAEIKGHR---RTY-VG---AMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASA 471 (1230)
Q Consensus 406 -------~~~~~~~~~~~~~d~~~i~g~~---~~~-~g---~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~a 471 (1230)
..||+.+.++...+ .+.|.- ... .| ..+|.+ ....+.|+|||||+++.. +..++
T Consensus 78 ~~~~~~~~~pfv~~p~~~t~~--~l~G~~d~~~~l~~g~~~~~~G~L------~~A~~GiL~lDEi~~l~~----~~q~~ 145 (633)
T TIGR02442 78 YRPSEQRPVPFVNLPLGATED--RVVGSLDIERALREGEKAFQPGLL------AEAHRGILYIDEVNLLDD----HLVDV 145 (633)
T ss_pred ccccccCCCCeeeCCCCCcHH--HcCCcccHHHHhhcCCeeecCcce------eecCCCeEEeChhhhCCH----HHHHH
Confidence 36787766543211 222210 000 01 123433 344567999999999853 45788
Q ss_pred HHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-CCCCHhhhcccce-eecCCCC-HHHHHHHHHHhhc--------
Q psy8969 472 LLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-DTIPEPLRDRMEM-IDVSGYV-AEEKVAIAAQYLI-------- 540 (1230)
Q Consensus 472 ll~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-~~I~~~L~~R~~~-i~~~~~~-~~e~~~i~~~~l~-------- 540 (1230)
||+.|+..+..-..+.. ..... .++++|+|+|.. ..++++|++||.+ |.+.... .++..+|+.+.+.
T Consensus 146 Ll~~le~g~~~v~r~g~-~~~~~-~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~ 223 (633)
T TIGR02442 146 LLDAAAMGVNRVEREGL-SVSHP-ARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAF 223 (633)
T ss_pred HHHHHhcCCEEEEECCc-eeeec-CCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHH
Confidence 88888753221111111 11112 578999999975 3689999999986 4555443 3555666654221
Q ss_pred ------------chhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhh
Q psy8969 541 ------------PQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLS 608 (1230)
Q Consensus 541 ------------~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~ 608 (1230)
..+.....+ ...+.++++++..++..+ ...|+..++..+..+--..|...+.+ .-.|+.++|.
T Consensus 224 ~~~~~~~~~~l~~~i~~ar~~-~~~V~is~~~~~~l~~~~-~~~~i~s~Ra~i~~~r~Ara~AaL~g---r~~V~~~Dv~ 298 (633)
T TIGR02442 224 AARWAAEQEELRNRIARARSL-LPSVRISDSLIRFISELC-IEFGVDGHRADIVMARAARALAALDG---RRRVTAEDVR 298 (633)
T ss_pred HHHhhhhHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHH-HHhCCCCccHHHHHHHHHHHHHHHcC---CCcCCHHHHH
Confidence 111111112 346788999887776554 44444434333321111112222322 2357777775
Q ss_pred h
Q psy8969 609 D 609 (1230)
Q Consensus 609 ~ 609 (1230)
.
T Consensus 299 ~ 299 (633)
T TIGR02442 299 E 299 (633)
T ss_pred H
Confidence 4
No 165
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.25 E-value=5.1e-12 Score=153.29 Aligned_cols=109 Identities=20% Similarity=0.310 Sum_probs=94.1
Q ss_pred CcccccccccCCCcceeeeeccccCcCCCCCchhHHHHHHHHHh--hhCCCCCcCceeeeeEEEeeeEeecCCchHHHHH
Q psy8969 661 IFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITITTALVSL--ATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIA 738 (1230)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~~a~~s~--~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~a 738 (1230)
.|...++++++.+|. +||+||+++++||+||+|+ ..++++..+++|+|||+|+|.|.||+|+..++++
T Consensus 54 ~~p~~~I~VNlaPgg----------l~k~g~~~DLaIA~ailsa~~~~~~~~~~~~~~~GElgL~G~vr~V~gi~~~~~~ 123 (499)
T TIGR00368 54 HFPAKRITINLAPAD----------LPKEGGRFDLPIAIGILAASEQLDAKNLGEYLFLGELALDGKLRGIKGVLPAIAL 123 (499)
T ss_pred CCCCeeEEEEecCCC----------eeccCccccHHHHHHHHHhccCCCCCcccCEEEEEEecCCceeccCcCHHHHHHH
Confidence 345567777776553 8999999999999999999 7778888999999999999999999999999999
Q ss_pred HHHcCcceeecCccccccccCchhhHhhccceecccchhhhhhccc
Q psy8969 739 AKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVF 784 (1230)
Q Consensus 739 a~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~~~eVl~ia~ 784 (1230)
|.+.|+++||+|.+|.++... ..+++++.+++..++++...
T Consensus 124 A~~~G~~~~ivP~~n~~e~~~-----~~~i~v~~v~~L~e~~~~l~ 164 (499)
T TIGR00368 124 AQKSGRKFIIVPKENAEEASL-----IDGLNIYGADHLKEVVKFLE 164 (499)
T ss_pred HHHcCCCEEEechhhhhhhcc-----CCCcEEEEchhHHHHHHHhc
Confidence 999999999999999764322 24889999999999988653
No 166
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.24 E-value=7.5e-11 Score=139.04 Aligned_cols=161 Identities=24% Similarity=0.307 Sum_probs=102.1
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC--eEEEe---cCCcc-hhHHHhhcc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE--YFRFS---VGGMS-DVAEIKGHR 427 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~--~~~~~---~~~~~-d~~~i~g~~ 427 (1230)
+++++-++..+.++..+. .++.++|+||||||||++|+.+|..++.. +.++. +..-. -...|.|.+
T Consensus 175 ~d~~i~e~~le~l~~~L~--------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLT--------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHh--------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 346777777777766653 35678899999999999999999998642 23332 22111 223355666
Q ss_pred ccccccC--chhHHHHHHhhcCC---CCEEEEecccccCCCCCCChhhHHHhhcChhhhh---hhhhhccC----ccccC
Q psy8969 428 RTYVGAM--PGKVIQCMKKTKTE---NPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNA---NFLDHYLD----VPVDL 495 (1230)
Q Consensus 428 ~~~~g~~--~g~i~~~~~~~~~~---~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~---~f~d~~~~----~~~d~ 495 (1230)
..++|-. +|.+.+++..|... +-|||||||++...+ ...+.|+.+||..... ...-.|.+ .-.-.
T Consensus 247 P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~---kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 247 PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS---KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH---HhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 6555543 46666676666543 348899999975321 1234556666642111 00001110 11123
Q ss_pred CceEEEEecCCCC----CCCHhhhcccceeecCC
Q psy8969 496 SRVLFICTANVID----TIPEPLRDRMEMIDVSG 525 (1230)
Q Consensus 496 s~v~~I~TaN~~~----~I~~~L~~R~~~i~~~~ 525 (1230)
+|+.||+|.|..| .+|.||++||..|++.+
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhheEEecC
Confidence 7999999999988 89999999999998876
No 167
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.23 E-value=6.4e-11 Score=145.47 Aligned_cols=174 Identities=24% Similarity=0.376 Sum_probs=104.7
Q ss_pred HHhhhhcccccChHHHHHHHHHHHHHhhhc----C-C-CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE----ecCC
Q psy8969 347 QAAKILDDDHYGMEDVKKRILEFIAVSQLK----G-T-TQGKILCFYGPPGVGKTSIAKSIARALNREYFRF----SVGG 416 (1230)
Q Consensus 347 ~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~----~-~-~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~----~~~~ 416 (1230)
....-+-.+++|++.+|..|+-.+.-.... + . .....|||+|+||+|||++|+++++.+.+..+.. +..|
T Consensus 196 ~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~ 275 (509)
T smart00350 196 RLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVG 275 (509)
T ss_pred HHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCC
Confidence 344556788999999999887665322111 0 0 1113599999999999999999999987643221 1122
Q ss_pred cchhHHHhhcccccccc---CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccc
Q psy8969 417 MSDVAEIKGHRRTYVGA---MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPV 493 (1230)
Q Consensus 417 ~~d~~~i~g~~~~~~g~---~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~ 493 (1230)
+.. ..++ ....|+ .+|.+ ....+.+++|||||++.. +..++|++.|+..+. .+.. .+...
T Consensus 276 l~~-~~~~---~~~~g~~~~~~G~l------~~A~~Gil~iDEi~~l~~----~~q~~L~e~me~~~i-~i~k--~G~~~ 338 (509)
T smart00350 276 LTA-AVTR---DPETREFTLEGGAL------VLADNGVCCIDEFDKMDD----SDRTAIHEAMEQQTI-SIAK--AGITT 338 (509)
T ss_pred ccc-cceE---ccCcceEEecCccE------EecCCCEEEEechhhCCH----HHHHHHHHHHhcCEE-EEEe--CCEEE
Confidence 211 0110 001111 12322 234567999999999843 457889998864321 1000 01111
Q ss_pred c-CCceEEEEecCCCC-------------CCCHhhhccccee-ecCCCCHHHH-HHHHHH
Q psy8969 494 D-LSRVLFICTANVID-------------TIPEPLRDRMEMI-DVSGYVAEEK-VAIAAQ 537 (1230)
Q Consensus 494 d-~s~v~~I~TaN~~~-------------~I~~~L~~R~~~i-~~~~~~~~e~-~~i~~~ 537 (1230)
. ..++.+|+|+|+.+ .+|++|+|||+.| .+.++..++. ..|+..
T Consensus 339 ~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 339 TLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred EecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 1 14788999999864 5999999999864 5555555544 455544
No 168
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.23 E-value=4.6e-11 Score=145.03 Aligned_cols=188 Identities=19% Similarity=0.309 Sum_probs=119.3
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhC-----CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEec
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALN-----REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDE 456 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~-----~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDE 456 (1230)
..++|+||||+|||.|+++||+.+. ..++.++...+.. ++ +++........|...-...+||+|||
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~dlLiiDD 219 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN--DF-------VNALRNNTMEEFKEKYRSVDVLLIDD 219 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH--HH-------HHHHHcCcHHHHHHHHhcCCEEEEeh
Confidence 5689999999999999999999983 4455555433322 11 11110011223332223467999999
Q ss_pred ccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCC---CCHhhhcccc---eeecCCCCHHH
Q psy8969 457 VDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDT---IPEPLRDRME---MIDVSGYVAEE 530 (1230)
Q Consensus 457 IDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~---I~~~L~~R~~---~i~~~~~~~~e 530 (1230)
||.+.... .....|+.+++.- .+....++|++.+.+.. +++.|++||. ++.+.+|+.++
T Consensus 220 i~~l~~~~--~~~~~l~~~~n~l-------------~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 220 IQFLAGKE--RTQEEFFHTFNAL-------------HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLET 284 (450)
T ss_pred hhhhcCCH--HHHHHHHHHHHHH-------------HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHH
Confidence 99874321 1123444444331 11223345544444443 7789999995 79999999999
Q ss_pred HHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhh
Q psy8969 531 KVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDF 610 (1230)
Q Consensus 531 ~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~ 610 (1230)
+..|+++.+- . ..+.++++++..|++++ .+.+|.|+..|..+.+.... .+. .||.+.+.++
T Consensus 285 r~~il~~~~~-----~-----~~~~l~~e~l~~ia~~~--~~~~R~l~~~l~~l~~~~~~---~~~----~it~~~~~~~ 345 (450)
T PRK00149 285 RIAILKKKAE-----E-----EGIDLPDEVLEFIAKNI--TSNVRELEGALNRLIAYASL---TGK----PITLELAKEA 345 (450)
T ss_pred HHHHHHHHHH-----H-----cCCCCCHHHHHHHHcCc--CCCHHHHHHHHHHHHHHHHh---hCC----CCCHHHHHHH
Confidence 9999887652 1 25789999999999885 55689999888887654322 111 2566666666
Q ss_pred cC
Q psy8969 611 VG 612 (1230)
Q Consensus 611 ~~ 612 (1230)
++
T Consensus 346 l~ 347 (450)
T PRK00149 346 LK 347 (450)
T ss_pred HH
Confidence 65
No 169
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.21 E-value=6.7e-11 Score=141.83 Aligned_cols=189 Identities=19% Similarity=0.294 Sum_probs=118.7
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHh-----CCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEe
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARAL-----NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLID 455 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l-----~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillD 455 (1230)
...++|+||||+|||.|+++||+.+ +..++.++...... ++.... .. +. ...|...-....||+||
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~--~~~~~~----~~--~~-~~~~~~~~~~~dlLiiD 206 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN--DFVNAL----RN--NK-MEEFKEKYRSVDLLLID 206 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH--HHHHHH----Hc--CC-HHHHHHHHHhCCEEEEe
Confidence 4568999999999999999999987 56667776533221 111110 00 11 12222222235699999
Q ss_pred cccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC---CCCCHhhhcccc---eeecCCCCHH
Q psy8969 456 EVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI---DTIPEPLRDRME---MIDVSGYVAE 529 (1230)
Q Consensus 456 EIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~---~~I~~~L~~R~~---~i~~~~~~~~ 529 (1230)
|||.+.... .....|+.+++... +....++|++.+.+ +.+++.|++||. ++.+.+|+.+
T Consensus 207 Di~~l~~~~--~~~~~l~~~~n~~~-------------~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 207 DIQFLAGKE--RTQEEFFHTFNALH-------------ENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLE 271 (405)
T ss_pred hhhhhcCCH--HHHHHHHHHHHHHH-------------HCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHH
Confidence 999875321 12234555544311 11233444443333 356789999996 6899999999
Q ss_pred HHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhh
Q psy8969 530 EKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSD 609 (1230)
Q Consensus 530 e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~ 609 (1230)
++..|+++.+- . ..+.++++++..|++.+ ...+|.|+..|..+.+.+.. .+ -.||.+.+.+
T Consensus 272 ~r~~il~~~~~-----~-----~~~~l~~e~l~~ia~~~--~~~~r~l~~~l~~l~~~a~~---~~----~~it~~~~~~ 332 (405)
T TIGR00362 272 TRLAILQKKAE-----E-----EGLELPDEVLEFIAKNI--RSNVRELEGALNRLLAYASL---TG----KPITLELAKE 332 (405)
T ss_pred HHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHH---hC----CCCCHHHHHH
Confidence 99999877542 2 35778999999999875 45689999999988765322 11 1256666665
Q ss_pred hcC
Q psy8969 610 FVG 612 (1230)
Q Consensus 610 ~~~ 612 (1230)
.|+
T Consensus 333 ~L~ 335 (405)
T TIGR00362 333 ALK 335 (405)
T ss_pred HHH
Confidence 554
No 170
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.21 E-value=1.3e-11 Score=131.74 Aligned_cols=153 Identities=24% Similarity=0.391 Sum_probs=71.8
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE-------EE-ecCCcchhHHHhh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF-------RF-SVGGMSDVAEIKG 425 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~-------~~-~~~~~~d~~~i~g 425 (1230)
+|+.||+.+|+.+.-..+ -+..|||+||||||||++|++++..|-.--. .+ ++.|......+..
T Consensus 3 ~dI~GQe~aKrAL~iAAa--------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~ 74 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA--------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIR 74 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH--------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE
T ss_pred hhhcCcHHHHHHHHHHHc--------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceec
Confidence 589999999998876654 1457999999999999999999988642110 00 0111000000000
Q ss_pred c-----------ccccccc----CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccC
Q psy8969 426 H-----------RRTYVGA----MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLD 490 (1230)
Q Consensus 426 ~-----------~~~~~g~----~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~ 490 (1230)
. ....+|. .||.| +...+.|+||||+--+ ..+...+|++.|+.....-.... ..
T Consensus 75 ~~Pfr~phhs~s~~~liGgg~~~~PGei------slAh~GVLflDE~~ef----~~~vld~Lr~ple~g~v~i~R~~-~~ 143 (206)
T PF01078_consen 75 QRPFRAPHHSASEAALIGGGRPPRPGEI------SLAHRGVLFLDELNEF----DRSVLDALRQPLEDGEVTISRAG-GS 143 (206)
T ss_dssp ---EEEE-TT--HHHHHEEGGGEEE-CG------GGGTTSEEEECETTTS-----HHHHHHHHHHHHHSBEEEEETT-EE
T ss_pred CCCcccCCCCcCHHHHhCCCcCCCcCHH------HHhcCCEEEechhhhc----CHHHHHHHHHHHHCCeEEEEECC-ce
Confidence 0 0011222 45655 5678899999999765 34566777777765433211111 11
Q ss_pred ccccCCceEEEEecC-----------------------CCCCCCHhhhcccce-eecCCC
Q psy8969 491 VPVDLSRVLFICTAN-----------------------VIDTIPEPLRDRMEM-IDVSGY 526 (1230)
Q Consensus 491 ~~~d~s~v~~I~TaN-----------------------~~~~I~~~L~~R~~~-i~~~~~ 526 (1230)
+.+. .++++|+|+| +...|..||+|||++ +.++..
T Consensus 144 ~~~P-a~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~ 202 (206)
T PF01078_consen 144 VTYP-ARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRV 202 (206)
T ss_dssp EEEB---EEEEEEE-S--------------------------------------------
T ss_pred EEEe-cccEEEEEecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2222 4789999999 556899999999997 455443
No 171
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=3.3e-11 Score=129.08 Aligned_cols=140 Identities=23% Similarity=0.374 Sum_probs=93.0
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCC------------------------eEEEecCCcchhHHHhhccccccccC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNRE------------------------YFRFSVGGMSDVAEIKGHRRTYVGAM 434 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~------------------------~~~~~~~~~~d~~~i~g~~~~~~g~~ 434 (1230)
.-+..+||+||||+|||++|+.+|+.+..+ |..+...+. .++
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~------------~~~-- 77 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ------------SIK-- 77 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC------------cCC--
Confidence 345679999999999999999999998542 111111100 000
Q ss_pred chhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCC
Q psy8969 435 PGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDT 509 (1230)
Q Consensus 435 ~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~ 509 (1230)
-..|.+.+..+. ....||||||+|++.. +..++||..|+. + -++++||+++|....
T Consensus 78 ~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~----~~~~~Ll~~le~-------------~--~~~~~~il~~~~~~~ 138 (188)
T TIGR00678 78 VDQVRELVEFLSRTPQESGRRVVIIEDAERMNE----AAANALLKTLEE-------------P--PPNTLFILITPSPEK 138 (188)
T ss_pred HHHHHHHHHHHccCcccCCeEEEEEechhhhCH----HHHHHHHHHhcC-------------C--CCCeEEEEEECChHh
Confidence 012322222222 2345999999999843 235566666542 1 135778877888899
Q ss_pred CCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHH
Q psy8969 510 IPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKN 567 (1230)
Q Consensus 510 I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~ 567 (1230)
|.+++++|+.++.+.+++.+|...++.+. | ++++++..+++.
T Consensus 139 l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---------g-------i~~~~~~~i~~~ 180 (188)
T TIGR00678 139 LLPTIRSRCQVLPFPPLSEEALLQWLIRQ---------G-------ISEEAAELLLAL 180 (188)
T ss_pred ChHHHHhhcEEeeCCCCCHHHHHHHHHHc---------C-------CCHHHHHHHHHH
Confidence 99999999999999999999987766553 3 456777777654
No 172
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.20 E-value=1.1e-10 Score=117.24 Aligned_cols=144 Identities=24% Similarity=0.390 Sum_probs=89.0
Q ss_pred cChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhcccccccc
Q psy8969 357 YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGA 433 (1230)
Q Consensus 357 ~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~ 433 (1230)
+|.+.+...|..++.. ..+..++++||||+|||++++.+++.+ +.+++.++............. .+.
T Consensus 1 ~~~~~~~~~i~~~~~~------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~ 70 (151)
T cd00009 1 VGQEEAIEALREALEL------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAEL----FGH 70 (151)
T ss_pred CchHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHH----hhh
Confidence 4667777777777632 245679999999999999999999999 888888876554432222110 000
Q ss_pred CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC--CCC
Q psy8969 434 MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID--TIP 511 (1230)
Q Consensus 434 ~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~--~I~ 511 (1230)
. ...............+|+|||++.+.. +....+++++..... ......++.+|+|+|... .++
T Consensus 71 ~-~~~~~~~~~~~~~~~~lilDe~~~~~~----~~~~~~~~~i~~~~~---------~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 71 F-LVRLLFELAEKAKPGVLFIDEIDSLSR----GAQNALLRVLETLND---------LRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred h-hHhHHHHhhccCCCeEEEEeChhhhhH----HHHHHHHHHHHhcCc---------eeccCCCeEEEEecCccccCCcC
Confidence 0 000111112233456999999998621 223344444432111 002236788999999887 789
Q ss_pred Hhhhccc-ceeecC
Q psy8969 512 EPLRDRM-EMIDVS 524 (1230)
Q Consensus 512 ~~L~~R~-~~i~~~ 524 (1230)
+.+++|+ ..|.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 9999999 455543
No 173
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.19 E-value=1.6e-10 Score=131.62 Aligned_cols=64 Identities=27% Similarity=0.446 Sum_probs=46.2
Q ss_pred cccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC--CCeEEEecCCc
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN--REYFRFSVGGM 417 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~--~~~~~~~~~~~ 417 (1230)
.+...||.++++...-.+. ....+...|+.|||.||||||||.||-+||++|| .||+.++.+.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~-mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVD-MIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp ETTEES-HHHHHHHHHHHH-HHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred cccccChHHHHHHHHHHHH-HHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 3578999999998654432 2234556789999999999999999999999998 78998886544
No 174
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=6.3e-11 Score=138.36 Aligned_cols=190 Identities=18% Similarity=0.275 Sum_probs=118.5
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC----eEEEecC----CcchhHHH--
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE----YFRFSVG----GMSDVAEI-- 423 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~----~~~~~~~----~~~d~~~i-- 423 (1230)
++++|++++++.+...+... .-+..+||+||+|+|||++|+.+|+.+... +.....+ .......+
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHc
Confidence 57899999999999987532 223469999999999999999999998651 1111111 11111111
Q ss_pred hhccccc-cc----cC---------chhHH---HHHHhh--cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhh
Q psy8969 424 KGHRRTY-VG----AM---------PGKVI---QCMKKT--KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANF 484 (1230)
Q Consensus 424 ~g~~~~~-~g----~~---------~g~i~---~~~~~~--~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f 484 (1230)
..|-.-+ +. .. -..|+ +.+... .....||||||+|.+.. ...++||..|+..
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~----~aanaLLk~LEEp----- 168 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR----NAANAILKTLEEP----- 168 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH----HHHHHHHHHHhcC-----
Confidence 0111100 10 00 01122 222221 22346999999999843 4567888887531
Q ss_pred hhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHH
Q psy8969 485 LDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVL 564 (1230)
Q Consensus 485 ~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~l 564 (1230)
-++++||+.|+.++.+.+++++||..+.+.+++.++...++... |.... ++++++..+
T Consensus 169 ----------p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~---------~~~~~---~~~~~~~~i 226 (351)
T PRK09112 169 ----------PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL---------GSSQG---SDGEITEAL 226 (351)
T ss_pred ----------CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh---------hcccC---CCHHHHHHH
Confidence 14677787788899999999999999999999999988777652 22211 566766666
Q ss_pred HHHhhhhhhHHHHHHHH
Q psy8969 565 IKNYCRESGVRNLQKHI 581 (1230)
Q Consensus 565 i~~~~~e~gvR~l~~~i 581 (1230)
++ ++ ++..|...+.+
T Consensus 227 ~~-~s-~G~pr~Al~ll 241 (351)
T PRK09112 227 LQ-RS-KGSVRKALLLL 241 (351)
T ss_pred HH-Hc-CCCHHHHHHHH
Confidence 54 33 34455444444
No 175
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.17 E-value=5.3e-10 Score=125.02 Aligned_cols=63 Identities=29% Similarity=0.463 Sum_probs=49.0
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC--CCeEEEecCCc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN--REYFRFSVGGM 417 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~--~~~~~~~~~~~ 417 (1230)
+-..||.++++.---.+. ....+...|+++|++||||||||.||-+||++|| .||+.++.+.+
T Consensus 39 dG~VGQ~~AReAaGvIv~-mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVK-MIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHH-HHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 458999999986322211 1234556789999999999999999999999998 79999886654
No 176
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=3.5e-10 Score=130.99 Aligned_cols=156 Identities=18% Similarity=0.288 Sum_probs=103.6
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA 433 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~ 433 (1230)
++++|++++++.+...+.. ..-+..+||+||+|+|||++|+++|+.+..... .+.-.|...+......-++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~-----~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~---~~~h~D~~~~~~~~~~~i~- 74 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK-----NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQ---QREYVDIIEFKPINKKSIG- 74 (313)
T ss_pred hhccCcHHHHHHHHHHHHc-----CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCC---CCCCCCeEEeccccCCCCC-
Confidence 5788999999999888742 234457899999999999999999998743210 0000111011000000000
Q ss_pred CchhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC
Q psy8969 434 MPGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID 508 (1230)
Q Consensus 434 ~~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~ 508 (1230)
-..|++..... .....|++||++|+++. ...++||..|+.. -++++||++|+.++
T Consensus 75 -v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~----~a~naLLK~LEep---------------p~~t~~il~~~~~~ 134 (313)
T PRK05564 75 -VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE----QAQNAFLKTIEEP---------------PKGVFIILLCENLE 134 (313)
T ss_pred -HHHHHHHHHHHhcCcccCCceEEEEechhhcCH----HHHHHHHHHhcCC---------------CCCeEEEEEeCChH
Confidence 11233333321 12345999999999843 3577888887641 24678887778889
Q ss_pred CCCHhhhcccceeecCCCCHHHHHHHHHHh
Q psy8969 509 TIPEPLRDRMEMIDVSGYVAEEKVAIAAQY 538 (1230)
Q Consensus 509 ~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~ 538 (1230)
.|.+.+++|+.++.+..++.++...++.+.
T Consensus 135 ~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 135 QILDTIKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred hCcHHHHhhceeeeCCCcCHHHHHHHHHHH
Confidence 999999999999999999999987666543
No 177
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.13 E-value=2.3e-10 Score=137.99 Aligned_cols=171 Identities=19% Similarity=0.273 Sum_probs=107.6
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhC-----CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEec
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALN-----REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDE 456 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~-----~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDE 456 (1230)
..|+||||||+|||.|+++||+.+. ..++.++...+.. ++.. .+ . .+.+...........+||||||
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~--~~~~---~~-~--~~~~~~f~~~~~~~~dvLlIDD 202 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN--DLVD---SM-K--EGKLNEFREKYRKKVDVLLIDD 202 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH--HHHH---HH-h--cccHHHHHHHHHhcCCEEEEec
Confidence 4599999999999999999999863 3445555432211 1110 00 0 0112222222223467999999
Q ss_pred ccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC---CCCHhhhcccc---eeecCCCCHHH
Q psy8969 457 VDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID---TIPEPLRDRME---MIDVSGYVAEE 530 (1230)
Q Consensus 457 IDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~---~I~~~L~~R~~---~i~~~~~~~~e 530 (1230)
||.+.... .....|+.+++.. .+....++|+|.+.+. .+.+.|++||. ++.+..|..+.
T Consensus 203 i~~l~~~~--~~q~elf~~~n~l-------------~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 203 VQFLIGKT--GVQTELFHTFNEL-------------HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred hhhhcCcH--HHHHHHHHHHHHH-------------HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 99863210 1122344333221 1223344444444444 46688999998 88999999999
Q ss_pred HHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 531 KVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 531 ~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
+..|+++..- . ..+.++++++..|++++ ...+|.|+..+.++...
T Consensus 268 r~~IL~~~~~-----~-----~~~~l~~ev~~~Ia~~~--~~~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 268 RKKIARKMLE-----I-----EHGELPEEVLNFVAENV--DDNLRRLRGAIIKLLVY 312 (440)
T ss_pred HHHHHHHHHH-----h-----cCCCCCHHHHHHHHhcc--ccCHHHHHHHHHHHHHH
Confidence 9999877541 2 35778999999999885 45789999999887654
No 178
>PRK04132 replication factor C small subunit; Provisional
Probab=99.13 E-value=4.1e-10 Score=142.60 Aligned_cols=162 Identities=19% Similarity=0.292 Sum_probs=115.1
Q ss_pred EEeC--CCCCCchHHHHHHHHHh-----CCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecc
Q psy8969 385 CFYG--PPGVGKTSIAKSIARAL-----NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEV 457 (1230)
Q Consensus 385 lL~G--PPG~GKTslak~iA~~l-----~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEI 457 (1230)
+..| |++.||||+|++||+.+ +.+|+.++.++.+....++..-..+....|- .+....||||||+
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~--------~~~~~KVvIIDEa 639 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPI--------GGASFKIIFLDEA 639 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCc--------CCCCCEEEEEECc
Confidence 3458 99999999999999998 5678999987654333333111111000000 0112359999999
Q ss_pred cccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHH
Q psy8969 458 DKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQ 537 (1230)
Q Consensus 458 Dk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~ 537 (1230)
|++.. +.+++|+..|+.. -.++.||++||.++.|.++|+|||.++.|.+++.++....+.+
T Consensus 640 D~Lt~----~AQnALLk~lEep---------------~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 640 DALTQ----DAQQALRRTMEMF---------------SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ccCCH----HHHHHHHHHhhCC---------------CCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHH
Confidence 99854 4678888887631 1478999999999999999999999999999999988776655
Q ss_pred hhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 538 YLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 538 ~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
.. +. +.+.++++++..|++. ..+++|..-..++.+.
T Consensus 701 I~-----~~-----Egi~i~~e~L~~Ia~~--s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 701 IA-----EN-----EGLELTEEGLQAILYI--AEGDMRRAINILQAAA 736 (846)
T ss_pred HH-----Hh-----cCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 32 22 2466788999988865 4666787777776543
No 179
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=8.1e-10 Score=136.85 Aligned_cols=219 Identities=11% Similarity=0.178 Sum_probs=123.2
Q ss_pred HHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE-ecCCc---chh
Q psy8969 345 LTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF-SVGGM---SDV 420 (1230)
Q Consensus 345 ~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~-~~~~~---~d~ 420 (1230)
..+-+-.--+|+.|+++..+.+..++... ..+...+.+++|+||||+|||+++++||+.++..++.+ +..+. .+.
T Consensus 75 ~eKyrP~~ldel~~~~~ki~~l~~~l~~~-~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~ 153 (637)
T TIGR00602 75 VEKYKPETQHELAVHKKKIEEVETWLKAQ-VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKND 153 (637)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccc
Confidence 33444444467999999999888887532 33345667899999999999999999999999776442 11000 000
Q ss_pred ----HHHhhccccccccCchhHHHHHHhh-----------cCCCCEEEEecccccCCCCCCChhhHHHhhcC-hhhhhhh
Q psy8969 421 ----AEIKGHRRTYVGAMPGKVIQCMKKT-----------KTENPLVLIDEVDKIGKGYSGDPASALLEMLD-PEQNANF 484 (1230)
Q Consensus 421 ----~~i~g~~~~~~g~~~g~i~~~~~~~-----------~~~~pvillDEIDk~~~~~~~~~~~all~~ld-~~q~~~f 484 (1230)
..+......+ .+.-..+...+..+ .....||||||||.+... + ..++..+|. .
T Consensus 154 ~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---~-~~~lq~lLr~~------ 222 (637)
T TIGR00602 154 HKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---D-TRALHEILRWK------ 222 (637)
T ss_pred cccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---h-HHHHHHHHHHH------
Confidence 0000000000 00001111111111 123459999999976431 1 123333332 1
Q ss_pred hhhccCccccCCceEEEEecCCC---------CC----CCHhhhc--ccceeecCCCCHHHHHHHHHHhhcchhHHhcCC
Q psy8969 485 LDHYLDVPVDLSRVLFICTANVI---------DT----IPEPLRD--RMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGL 549 (1230)
Q Consensus 485 ~d~~~~~~~d~s~v~~I~TaN~~---------~~----I~~~L~~--R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl 549 (1230)
|.+ .-.-.+++|+|.|.. .. |.++|++ |+.+|.|.+|...+....+.+.+-.+ ....
T Consensus 223 ---~~e--~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E---~~~~ 294 (637)
T TIGR00602 223 ---YVS--IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIE---AKKN 294 (637)
T ss_pred ---hhc--CCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhh---hhcc
Confidence 111 011234555554433 12 4489987 77789999999999877777765321 1112
Q ss_pred CCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 550 SPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 550 ~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
..+....+++++..|+.. ..+++|..-..++-++
T Consensus 295 ~~~~~~p~~~~l~~I~~~--s~GDiRsAIn~LQf~~ 328 (637)
T TIGR00602 295 GEKIKVPKKTSVELLCQG--CSGDIRSAINSLQFSS 328 (637)
T ss_pred ccccccCCHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 222223357888888763 6777888777776655
No 180
>PRK08727 hypothetical protein; Validated
Probab=99.11 E-value=1.1e-09 Score=121.46 Aligned_cols=179 Identities=19% Similarity=0.264 Sum_probs=112.7
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCC---CeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEeccc
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNR---EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVD 458 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~---~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEID 458 (1230)
..|+|+||+|||||.|+.+++.++-. ....+++.... ..+...+... ....+|+|||||
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~-----------------~~~~~~~~~l-~~~dlLiIDDi~ 103 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA-----------------GRLRDALEAL-EGRSLVALDGLE 103 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh-----------------hhHHHHHHHH-hcCCEEEEeCcc
Confidence 45999999999999999999877543 22333321110 1112222222 234699999999
Q ss_pred ccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecC-CCCC---CCHhhhcc---cceeecCCCCHHHH
Q psy8969 459 KIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN-VIDT---IPEPLRDR---MEMIDVSGYVAEEK 531 (1230)
Q Consensus 459 k~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN-~~~~---I~~~L~~R---~~~i~~~~~~~~e~ 531 (1230)
.+.... .-..+|+.+++.. .+. +.-+|+|+| .+.. +++.|++| +.++.+.+|..+++
T Consensus 104 ~l~~~~--~~~~~lf~l~n~~-------------~~~-~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~ 167 (233)
T PRK08727 104 SIAGQR--EDEVALFDFHNRA-------------RAA-GITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVAR 167 (233)
T ss_pred cccCCh--HHHHHHHHHHHHH-------------HHc-CCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHH
Confidence 875321 1123344333221 111 333555555 4554 47999999 56889999999999
Q ss_pred HHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhc
Q psy8969 532 VAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 532 ~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
..|+++.... .++.++++++.+|++... ..+|.+...++.+.+.... .+ -.||...+.+++
T Consensus 168 ~~iL~~~a~~----------~~l~l~~e~~~~La~~~~--rd~r~~l~~L~~l~~~~~~---~~----~~it~~~~~~~l 228 (233)
T PRK08727 168 AAVLRERAQR----------RGLALDEAAIDWLLTHGE--RELAGLVALLDRLDRESLA---AK----RRVTVPFLRRVL 228 (233)
T ss_pred HHHHHHHHHH----------cCCCCCHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHH---hC----CCCCHHHHHHHH
Confidence 9998874422 257899999999998854 5567777777776543221 11 147888888877
Q ss_pred CC
Q psy8969 612 GK 613 (1230)
Q Consensus 612 ~~ 613 (1230)
+.
T Consensus 229 ~~ 230 (233)
T PRK08727 229 EE 230 (233)
T ss_pred hh
Confidence 54
No 181
>KOG0990|consensus
Probab=99.09 E-value=4.9e-10 Score=124.24 Aligned_cols=202 Identities=18% Similarity=0.227 Sum_probs=127.8
Q ss_pred cCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE
Q psy8969 332 SLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR 411 (1230)
Q Consensus 332 ~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~ 411 (1230)
.+||-. +-+.-.++|+++++++-..+.+|..+ .+-+.+|||||||+|||+...+.|+.+-.|. .
T Consensus 28 ~~pwve---------kyrP~~l~dv~~~~ei~st~~~~~~~------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~-~ 91 (360)
T KOG0990|consen 28 PQPWVE---------KYRPPFLGIVIKQEPIWSTENRYSGM------PGLPHLLFYGPPGTGKTSTILANARDFYSPH-P 91 (360)
T ss_pred CCCCcc---------CCCCchhhhHhcCCchhhHHHHhccC------CCCCcccccCCCCCCCCCchhhhhhhhcCCC-C
Confidence 489953 33444567899999998888888533 3334799999999999999999999987641 1
Q ss_pred EecCCcchhHHHhhccccccccCchhHHHHHHhhcC--------CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhh
Q psy8969 412 FSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT--------ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNAN 483 (1230)
Q Consensus 412 ~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~--------~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~ 483 (1230)
.+ .+ ..++......-++- +..-++.|..+.. .-..|||||.|.+.. |..+||..+.+..+
T Consensus 92 ~~--~m--~lelnaSd~rgid~-vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----~AQnALRRviek~t--- 159 (360)
T KOG0990|consen 92 TT--SM--LLELNASDDRGIDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----DAQNALRRVIEKYT--- 159 (360)
T ss_pred ch--hH--HHHhhccCccCCcc-hHHHHHHHHhhccceeccccCceeEEEecchhHhhH----HHHHHHHHHHHHhc---
Confidence 11 00 11111111111111 1222344444432 234899999999855 45677776544321
Q ss_pred hhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHH
Q psy8969 484 FLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQV 563 (1230)
Q Consensus 484 f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~ 563 (1230)
.++-|+.-+|++..|.||+++||..+.+.+.+.+....+.... +.-+++.++++...+
T Consensus 160 ------------~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi----------~e~e~~~~~~~~~~a 217 (360)
T KOG0990|consen 160 ------------ANTRFATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHI----------RESEQKETNPEGYSA 217 (360)
T ss_pred ------------cceEEEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHH----------HhcchhhcCHHHHHH
Confidence 3566777789999999999999999999988877665544332 334667777777666
Q ss_pred HHHHhhhhhhHHHHHHHHHHHH
Q psy8969 564 LIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 564 li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
+++. .-+++|..-..|..+.
T Consensus 218 ~~r~--s~gDmr~a~n~Lqs~~ 237 (360)
T KOG0990|consen 218 LGRL--SVGDMRVALNYLQSIL 237 (360)
T ss_pred HHHH--hHHHHHHHHHHHHHHH
Confidence 5544 2344555444444433
No 182
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.08 E-value=5.4e-10 Score=136.63 Aligned_cols=168 Identities=18% Similarity=0.322 Sum_probs=110.3
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhC-----CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecc
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALN-----REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEV 457 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~-----~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEI 457 (1230)
.|+||||+|+|||.|+.+||+.+. ...+.++...+.. + ++.+......+.|...-....|||||+|
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~--e-------l~~al~~~~~~~f~~~y~~~DLLlIDDI 386 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN--E-------FINSIRDGKGDSFRRRYREMDILLVDDI 386 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH--H-------HHHHHHhccHHHHHHHhhcCCEEEEehh
Confidence 489999999999999999999873 4455555433221 1 1111111112233333334579999999
Q ss_pred cccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC----CCCCHhhhcccc---eeecCCCCHHH
Q psy8969 458 DKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI----DTIPEPLRDRME---MIDVSGYVAEE 530 (1230)
Q Consensus 458 Dk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~----~~I~~~L~~R~~---~i~~~~~~~~e 530 (1230)
+.+.... .-...|+.+++.- .+...- +|+|+|.. ..+++.|++||. ++.+..+..+.
T Consensus 387 q~l~gke--~tqeeLF~l~N~l-------------~e~gk~-IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 387 QFLEDKE--STQEEFFHTFNTL-------------HNANKQ-IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELET 450 (617)
T ss_pred ccccCCH--HHHHHHHHHHHHH-------------HhcCCC-EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHH
Confidence 9875321 1123444444331 122222 44566653 468899999996 57999999999
Q ss_pred HHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 531 KVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 531 ~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
++.|+++.. .. ..+.++++++.+|++++. ..+|.|+..|.++...
T Consensus 451 R~aIL~kka-----~~-----r~l~l~~eVi~yLa~r~~--rnvR~LegaL~rL~a~ 495 (617)
T PRK14086 451 RIAILRKKA-----VQ-----EQLNAPPEVLEFIASRIS--RNIRELEGALIRVTAF 495 (617)
T ss_pred HHHHHHHHH-----Hh-----cCCCCCHHHHHHHHHhcc--CCHHHHHHHHHHHHHH
Confidence 999987754 22 357889999999999864 4689999998887653
No 183
>PRK05642 DNA replication initiation factor; Validated
Probab=99.08 E-value=8.8e-10 Score=122.28 Aligned_cols=179 Identities=16% Similarity=0.272 Sum_probs=115.0
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEeccc
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVD 458 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEID 458 (1230)
..++|+||+|+|||.|++++|+++ +...+.++...+.. .. ..+++.+. ..++++||+|+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~-------------~~-~~~~~~~~----~~d~LiiDDi~ 107 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD-------------RG-PELLDNLE----QYELVCLDDLD 107 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh-------------hh-HHHHHhhh----hCCEEEEechh
Confidence 568899999999999999999865 34444454422211 00 12222222 34699999999
Q ss_pred ccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC---CCCCHhhhccc---ceeecCCCCHHHHH
Q psy8969 459 KIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI---DTIPEPLRDRM---EMIDVSGYVAEEKV 532 (1230)
Q Consensus 459 k~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~---~~I~~~L~~R~---~~i~~~~~~~~e~~ 532 (1230)
.+... .+-...|+.+++.. .+....++|+++..+ ..+.+.|++|| -++.+.+++.+++.
T Consensus 108 ~~~~~--~~~~~~Lf~l~n~~-------------~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 108 VIAGK--ADWEEALFHLFNRL-------------RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred hhcCC--hHHHHHHHHHHHHH-------------HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHH
Confidence 87432 11234456555431 222344555444333 34479999999 78899999999999
Q ss_pred HHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 533 AIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 533 ~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
.++++... .. .+.++++++.+|++.+ +..+|.|+..++.+-+ .+. ..+ -.||...+.++|+
T Consensus 173 ~il~~ka~-----~~-----~~~l~~ev~~~L~~~~--~~d~r~l~~~l~~l~~-~~l--~~~----~~it~~~~~~~L~ 233 (234)
T PRK05642 173 RALQLRAS-----RR-----GLHLTDEVGHFILTRG--TRSMSALFDLLERLDQ-ASL--QAQ----RKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHH-----Hc-----CCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHH-HHH--HcC----CcCCHHHHHHHhc
Confidence 99875431 22 3788999999999985 4557999999998864 222 111 1366666666654
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.07 E-value=9.2e-11 Score=122.72 Aligned_cols=145 Identities=23% Similarity=0.331 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE-ecCCcchhHHH--hhcccc-cccc
Q psy8969 358 GMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF-SVGGMSDVAEI--KGHRRT-YVGA 433 (1230)
Q Consensus 358 G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~-~~~~~~d~~~i--~g~~~~-~~g~ 433 (1230)
|++++++.+...+... .-+..+||+||+|+||+++|+++|+.+--.-..- ..+.......+ ..|..- ++..
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 7899999888877532 3455789999999999999999999875332110 01111111111 011111 1111
Q ss_pred C-------chhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEE
Q psy8969 434 M-------PGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFI 501 (1230)
Q Consensus 434 ~-------~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I 501 (1230)
. -..|++...... ....|++|||+|++.. +.++|||..|+.- -.++.||
T Consensus 76 ~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~----~a~NaLLK~LEep---------------p~~~~fi 136 (162)
T PF13177_consen 76 DKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE----EAQNALLKTLEEP---------------PENTYFI 136 (162)
T ss_dssp TTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H----HHHHHHHHHHHST---------------TTTEEEE
T ss_pred ccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH----HHHHHHHHHhcCC---------------CCCEEEE
Confidence 0 122332222221 1234999999999854 5678999988641 2589999
Q ss_pred EecCCCCCCCHhhhcccceeecCCC
Q psy8969 502 CTANVIDTIPEPLRDRMEMIDVSGY 526 (1230)
Q Consensus 502 ~TaN~~~~I~~~L~~R~~~i~~~~~ 526 (1230)
++|+.++.|.++++||+.+|.+.+.
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE---
T ss_pred EEECChHHChHHHHhhceEEecCCC
Confidence 9999999999999999999988653
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.2e-09 Score=126.06 Aligned_cols=161 Identities=18% Similarity=0.246 Sum_probs=106.0
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe-------EEEecCCcchh------
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-------FRFSVGGMSDV------ 420 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~-------~~~~~~~~~d~------ 420 (1230)
++++|++.+++.+...+... .-++.+||+||+|+||+++|+++|+.+...- -++.-+.-.|.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-----rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-----RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 68999999999999988542 2346899999999999999999999974321 00100111110
Q ss_pred ------------HHHhhccccccccCc-hhHHHH---HHhh--cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhh
Q psy8969 421 ------------AEIKGHRRTYVGAMP-GKVIQC---MKKT--KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNA 482 (1230)
Q Consensus 421 ------------~~i~g~~~~~~g~~~-g~i~~~---~~~~--~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~ 482 (1230)
.+..|..+...+... ..|++. +... .....|++||++|+++. ..+++||..|+.-
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----~aaNaLLK~LEEP--- 151 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----AAANALLKTLEEP--- 151 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----HHHHHHHHHHhCC---
Confidence 000010000000000 122222 2221 12345999999999843 4578899888641
Q ss_pred hhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhh
Q psy8969 483 NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 483 ~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l 539 (1230)
.+.+||++|+.++.|.+.++|||.++.+.+++.++...++.+..
T Consensus 152 -------------p~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 152 -------------GNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred -------------CCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 14578888889999999999999999999999999988776643
No 186
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.06 E-value=4.6e-10 Score=139.68 Aligned_cols=210 Identities=18% Similarity=0.261 Sum_probs=126.4
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCC--CeEEEecCCcchhHHHhhccc---cc-cc---cCchhHHHHHHhhcCCCCEE
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNR--EYFRFSVGGMSDVAEIKGHRR---TY-VG---AMPGKVIQCMKKTKTENPLV 452 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~--~~~~~~~~~~~d~~~i~g~~~---~~-~g---~~~g~i~~~~~~~~~~~pvi 452 (1230)
.+|||.|+||||||++|++|+..+.+ ||+++..+...| .+-|.-. .+ -| -.||.+ ....+.++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d--~L~G~idl~~~~~~g~~~~~~G~L------~~A~~GvL 88 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTED--RLIGGIDVEESLAGGQRVTQPGLL------DEAPRGVL 88 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchh--hcccchhhhhhhhcCcccCCCCCe------eeCCCCcE
Confidence 46899999999999999999999875 699888532211 1212110 00 01 123433 23456799
Q ss_pred EEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC---CCCHhhhccccee-ecCC-CC
Q psy8969 453 LIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID---TIPEPLRDRMEMI-DVSG-YV 527 (1230)
Q Consensus 453 llDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~---~I~~~L~~R~~~i-~~~~-~~ 527 (1230)
|||||+.+.. ...+.|++.|+..+..--.+. ..... -.++.+|+|+|..+ .++++|++||.+. .+.. ..
T Consensus 89 ~lDEi~rl~~----~~q~~Ll~al~~g~v~i~r~G-~~~~~-p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~ 162 (589)
T TIGR02031 89 YVDMANLLDD----GLSNRLLQALDEGVVIVEREG-ISVVH-PAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS 162 (589)
T ss_pred eccchhhCCH----HHHHHHHHHHHcCCeEEEECC-Cceee-cCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC
Confidence 9999999843 467889998875442110000 00111 13688999999876 8999999999973 3332 34
Q ss_pred HHHHHHHHHHhhcc--------------hhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy8969 528 AEEKVAIAAQYLIP--------------QAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIV 593 (1230)
Q Consensus 528 ~~e~~~i~~~~l~~--------------~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~ 593 (1230)
.++..+|+++.+.. ++.....+ ...|.++++++.+|+..+ .+.|+-.++..|..+--..|...+
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~-~~~V~i~~~~~~~l~~~~-~~~gv~s~Ra~i~~~r~ArA~Aal 240 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAAREL-LPQVTISAEQVKELVLTA-ASLGISGHRADLFAVRAAKAHAAL 240 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHh-cCCccCCHHHHHHHHHHH-HHcCCCCccHHHHHHHHHHHHHHH
Confidence 56667877765410 11122222 346889999988887654 566666555555433222233333
Q ss_pred hcCCCceEechhhhhhh
Q psy8969 594 KKESDKVTVTNDNLSDF 610 (1230)
Q Consensus 594 ~~~~~~~~i~~~~~~~~ 610 (1230)
.+. -.|+.++|...
T Consensus 241 ~gr---~~V~~~Dv~~a 254 (589)
T TIGR02031 241 HGR---TEVTEEDLKLA 254 (589)
T ss_pred hCC---CCCCHHHHHHH
Confidence 332 25777777553
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.4e-10 Score=133.03 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=102.7
Q ss_pred ccccC-hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe--EEEecCCcchhHHHh--hccc
Q psy8969 354 DDHYG-MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY--FRFSVGGMSDVAEIK--GHRR 428 (1230)
Q Consensus 354 ~d~~G-~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~--~~~~~~~~~d~~~i~--g~~~ 428 (1230)
+.++| ++.+++.+...+.. ..-+..+||+||+|+|||++|+++|+.+..+- -...+|...+-..+. .|..
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~-----~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD 79 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAK-----NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD 79 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHc-----CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC
Confidence 45666 99999988887642 23446789999999999999999999975321 000111111111110 0100
Q ss_pred -ccc---ccCc--hhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 429 -TYV---GAMP--GKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 429 -~~~---g~~~--g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
.++ |... ..|++..... .....|+||||+|++.. ...++||..|+.- -++
T Consensus 80 ~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~----~a~NaLLK~LEEP---------------p~~ 140 (329)
T PRK08058 80 VHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA----SAANSLLKFLEEP---------------SGG 140 (329)
T ss_pred EEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH----HHHHHHHHHhcCC---------------CCC
Confidence 011 1111 1233332221 12346999999999853 4578889888741 247
Q ss_pred eEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHH
Q psy8969 498 VLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~ 536 (1230)
++||++|+.+..|.++++||+.++.+..++.++...++.
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 788888989999999999999999999999988755543
No 188
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=4.9e-10 Score=131.58 Aligned_cols=161 Identities=18% Similarity=0.258 Sum_probs=105.0
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe-----------EEEecCCc-chhH
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-----------FRFSVGGM-SDVA 421 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~-----------~~~~~~~~-~d~~ 421 (1230)
++++|++++++.|...+... .-+..+||+||+|+||+++|.++|+.+-..- ..+..-|. ....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 57999999999999887542 3345699999999999999999999984311 00000010 0000
Q ss_pred HH--hhcccc-cc-----cc--------CchhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhh
Q psy8969 422 EI--KGHRRT-YV-----GA--------MPGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQ 480 (1230)
Q Consensus 422 ~i--~g~~~~-~~-----g~--------~~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q 480 (1230)
.+ ..|-.- ++ +. .-..|++..... .....||+|||+|.+.. ...++||..|+..
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~----~aanaLLK~LEep- 168 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA----NAANALLKVLEEP- 168 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH----HHHHHHHHHHhcC-
Confidence 01 011110 00 00 001222222211 12234999999999843 4567888887631
Q ss_pred hhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHh
Q psy8969 481 NANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQY 538 (1230)
Q Consensus 481 ~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~ 538 (1230)
-.+++||++|+.++.+.+.+++||..|.+.+++.++...++.+.
T Consensus 169 --------------p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 169 --------------PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred --------------CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh
Confidence 14678898999999999999999999999999999998777654
No 189
>PRK09087 hypothetical protein; Validated
Probab=99.05 E-value=1.2e-09 Score=120.32 Aligned_cols=171 Identities=14% Similarity=0.243 Sum_probs=111.2
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEeccccc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKI 460 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~ 460 (1230)
.+.++|+||+|+|||+|++++++..+..|+... .+.. .++..+ .+.+|+||+||.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~~-----------------~~~~~~-----~~~~l~iDDi~~~ 99 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIGS-----------------DAANAA-----AEGPVLIEDIDAG 99 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcch-----------------HHHHhh-----hcCeEEEECCCCC
Confidence 466899999999999999999998776554321 1111 011111 1247999999976
Q ss_pred CCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC---CCCCHhhhccc---ceeecCCCCHHHHHHH
Q psy8969 461 GKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI---DTIPEPLRDRM---EMIDVSGYVAEEKVAI 534 (1230)
Q Consensus 461 ~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~---~~I~~~L~~R~---~~i~~~~~~~~e~~~i 534 (1230)
. .+ ..+|+++++.- .+....++|+++..+ ....+.|++|+ .++++.+++.+++..|
T Consensus 100 ~----~~-~~~lf~l~n~~-------------~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 100 G----FD-ETGLFHLINSV-------------RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred C----CC-HHHHHHHHHHH-------------HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 3 12 34455554432 222344444433322 33478999999 7899999999999999
Q ss_pred HHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 535 AAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 535 ~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
+++..- . .++.++++++.+|+++.. ..+|.|...+..+-+... ..+ ..||...++++++
T Consensus 162 L~~~~~-----~-----~~~~l~~ev~~~La~~~~--r~~~~l~~~l~~L~~~~~---~~~----~~it~~~~~~~l~ 220 (226)
T PRK09087 162 IFKLFA-----D-----RQLYVDPHVVYYLVSRME--RSLFAAQTIVDRLDRLAL---ERK----SRITRALAAEVLN 220 (226)
T ss_pred HHHHHH-----H-----cCCCCCHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH---HhC----CCCCHHHHHHHHH
Confidence 988662 1 367899999999999876 456777777766654321 111 1367777776664
No 190
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.05 E-value=1.7e-09 Score=134.27 Aligned_cols=209 Identities=22% Similarity=0.357 Sum_probs=136.6
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchh---HHHhhcc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDV---AEIKGHR 427 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~---~~i~g~~ 427 (1230)
++++|...+-+++.+.+.... .....|||+|+||||||++|++|.... +.||+.++++.+.+. .++.|+.
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~ 271 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHE 271 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCC
Confidence 567787777777776663322 234568899999999999999999885 469999999988652 3455655
Q ss_pred cc-ccccC---chhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 428 RT-YVGAM---PGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 428 ~~-~~g~~---~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
+. +.|+. +|.+ ....+.+|||||||.+.. +....|+.+|+..+ |... -+......++-+|+|
T Consensus 272 ~~~~~~~~~~~~g~~------~~a~~GtL~ldei~~L~~----~~Q~~Ll~~l~~~~---~~~~-~~~~~~~~~~riI~~ 337 (534)
T TIGR01817 272 KGAFTGAIAQRKGRF------ELADGGTLFLDEIGEISP----AFQAKLLRVLQEGE---FERV-GGNRTLKVDVRLVAA 337 (534)
T ss_pred CCccCCCCcCCCCcc------cccCCCeEEEechhhCCH----HHHHHHHHHHhcCc---EEEC-CCCceEeecEEEEEe
Confidence 42 22321 2322 123467999999999843 35667777775422 1110 000001125778888
Q ss_pred cCCC-------CCCCHhhhcccce--eecCCCC--HHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhh
Q psy8969 504 ANVI-------DTIPEPLRDRMEM--IDVSGYV--AEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRES 572 (1230)
Q Consensus 504 aN~~-------~~I~~~L~~R~~~--i~~~~~~--~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~ 572 (1230)
||.. ..+.+.|..|+.+ |.++++- .+|...++..+ +.+.-.+.|.. +.++++++..|. .|..-+
T Consensus 338 s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~-l~~~~~~~~~~---~~~s~~a~~~L~-~~~WPG 412 (534)
T TIGR01817 338 TNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAF-LEKFNRENGRP---LTITPSAIRVLM-SCKWPG 412 (534)
T ss_pred CCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHH-HHHHHHHcCCC---CCCCHHHHHHHH-hCCCCC
Confidence 8753 3567788889875 5566665 35555666554 45555455542 689999998876 566788
Q ss_pred hHHHHHHHHHHHH
Q psy8969 573 GVRNLQKHIEKVT 585 (1230)
Q Consensus 573 gvR~l~~~i~~i~ 585 (1230)
+||.|++.|+.++
T Consensus 413 NvrEL~~v~~~a~ 425 (534)
T TIGR01817 413 NVRELENCLERTA 425 (534)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999988755
No 191
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.02 E-value=4.7e-09 Score=122.15 Aligned_cols=189 Identities=20% Similarity=0.326 Sum_probs=123.0
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcchh---HHHhhcccc-ccccC---chhHHHHHHhhcCCCC
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSDV---AEIKGHRRT-YVGAM---PGKVIQCMKKTKTENP 450 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d~---~~i~g~~~~-~~g~~---~g~i~~~~~~~~~~~p 450 (1230)
...|||.|+|||||+++|++|-.... .||+.++++.+.+. .++.|+.+. |.|+. +|.+ ....+.
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~------~~a~gG 95 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRF------ERADGG 95 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCch------hhCCCC
Confidence 45688999999999999999987654 69999999887652 345555432 22332 2322 123467
Q ss_pred EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-------CCCCHhhhcccce--e
Q psy8969 451 LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------DTIPEPLRDRMEM--I 521 (1230)
Q Consensus 451 villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------~~I~~~L~~R~~~--i 521 (1230)
.|||||||.+.. +....|+.+|+... |... -+...-..+|-+|+|||.. ..+.+.|+.|+.+ |
T Consensus 96 tL~Ldei~~L~~----~~Q~~Ll~~l~~~~---~~~~-g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i 167 (329)
T TIGR02974 96 TLFLDELATASL----LVQEKLLRVIEYGE---FERV-GGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVI 167 (329)
T ss_pred EEEeCChHhCCH----HHHHHHHHHHHcCc---EEec-CCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhc
Confidence 999999999843 44567777775422 1110 0001112357888888853 3566889999964 6
Q ss_pred ecCCCC--HHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8969 522 DVSGYV--AEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 522 ~~~~~~--~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r 586 (1230)
.++++- .+|...++..++ .+...+.|... ...++++++..|. .|..-++||.|++.|+.++.
T Consensus 168 ~lPpLReR~eDI~~L~~~fl-~~~~~~~~~~~-~~~ls~~a~~~L~-~y~WPGNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 168 TLPPLRERQEDIMLLAEHFA-IRMARELGLPL-FPGFTPQAREQLL-EYHWPGNVRELKNVVERSVY 231 (329)
T ss_pred CCCchhhhhhhHHHHHHHHH-HHHHHHhCCCC-CCCcCHHHHHHHH-hCCCCchHHHHHHHHHHHHH
Confidence 666665 356655555444 44444444421 1468999988876 66778899999999987664
No 192
>COG1750 Archaeal serine proteases [General function prediction only]
Probab=99.01 E-value=3.3e-10 Score=134.01 Aligned_cols=100 Identities=35% Similarity=0.444 Sum_probs=89.1
Q ss_pred CCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccccccccCchhhH-hhc
Q psy8969 689 DGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYI-REG 767 (1230)
Q Consensus 689 dgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elPe~v-r~~ 767 (1230)
-|||||.+|+.|++++++|..+|.|++|||-|.=.|.+-|||||+||+-||+++|++..+||..++. ..|+-++- +.+
T Consensus 113 GgPSagg~mtva~~~~~~~~~~~~~v~mTG~I~PDgsigpVGGi~~K~~AA~~~g~kifLIP~Gq~~-~~d~~~Y~k~~g 191 (579)
T COG1750 113 GGPSAGGYMTVAIYAALMGWSIRKDVMMTGMINPDGSIGPVGGILEKLEAAAKAGAKIFLIPVGQRI-VVDLVEYGKSLG 191 (579)
T ss_pred cCcccchHhHHHHHHHHhCCCcccCeeeeeeecCCCccccccchHHHHHHHHhCCCeEEEeeccccc-cccHHHHHhhcc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999 77777776 677
Q ss_pred cceecccchhhhhhcccccCCC
Q psy8969 768 LNVHFVSEWRQVYDLVFEHTSE 789 (1230)
Q Consensus 768 l~i~fvs~~~eVl~ia~~ht~e 789 (1230)
+...-|..+.+..-....|..+
T Consensus 192 l~vieV~~~~~aiyy~tg~~~e 213 (579)
T COG1750 192 LKVIEVGTLEDAAYYLTGPQIE 213 (579)
T ss_pred eEEEEEechhhhhhhhccccCC
Confidence 8888888887776655545444
No 193
>KOG0736|consensus
Probab=99.01 E-value=2.9e-09 Score=128.74 Aligned_cols=179 Identities=16% Similarity=0.291 Sum_probs=130.4
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEEEeccc
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVD 458 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-villDEID 458 (1230)
.-+.+||.|+||||||++.+++|..+|++++.++...+.+... +..+-++...|.+++...| ||||=-+|
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~---------~~~etkl~~~f~~a~~~~pavifl~~~d 500 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESA---------SHTETKLQAIFSRARRCSPAVLFLRNLD 500 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhccc---------chhHHHHHHHHHHHhhcCceEEEEeccc
Confidence 4467999999999999999999999999999998765554211 2234566777888877666 78899999
Q ss_pred ccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccc-eeecCCCCHHHHHHHHHH
Q psy8969 459 KIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRME-MIDVSGYVAEEKVAIAAQ 537 (1230)
Q Consensus 459 k~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~-~i~~~~~~~~e~~~i~~~ 537 (1230)
-++.+..|...--++.++...-. ..+..++...++||+|++..+.||+.+++-|- .|.++.+..+|..+|++-
T Consensus 501 vl~id~dgged~rl~~~i~~~ls------~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~ 574 (953)
T KOG0736|consen 501 VLGIDQDGGEDARLLKVIRHLLS------NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQW 574 (953)
T ss_pred eeeecCCCchhHHHHHHHHHHHh------cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHH
Confidence 88866666444344444322111 12345677899999999999999999999775 688999999999999988
Q ss_pred hhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 538 YLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 538 ~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
|+-.. .+.++.-..-+-.+|.....++|+..+..+-
T Consensus 575 y~~~~------------~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s 610 (953)
T KOG0736|consen 575 YLNHL------------PLNQDVNLKQLARKTSGFSFGDLEALVAHSS 610 (953)
T ss_pred HHhcc------------ccchHHHHHHHHHhcCCCCHHHHHHHhcCch
Confidence 87332 2444444444456677777888888777663
No 194
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=1.3e-09 Score=126.35 Aligned_cols=140 Identities=19% Similarity=0.256 Sum_probs=91.3
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE--EecCCcchhHHH--hhccccc-c---cc----CchhHHHHHHhh-
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFR--FSVGGMSDVAEI--KGHRRTY-V---GA----MPGKVIQCMKKT- 445 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~--~~~~~~~d~~~i--~g~~~~~-~---g~----~~g~i~~~~~~~- 445 (1230)
..+..+||+||+|+|||++|+++|+.+...--. -.+|...+-..+ ..|..-+ + ++ .-..|++....+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999999998642100 001111111111 0111110 1 00 001233322221
Q ss_pred ----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhccccee
Q psy8969 446 ----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMI 521 (1230)
Q Consensus 446 ----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i 521 (1230)
.....|++|||+|++.. ..+++||..|+.- -.+++||++|+.++.|+|.++|||..+
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~----~aaNaLLK~LEEP---------------p~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNR----NAANALLKSLEEP---------------SGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred hccccCCCeEEEECChhhCCH----HHHHHHHHHHhCC---------------CCCeEEEEEECChhhCcHHHHhhceee
Confidence 12345999999999854 5678999988742 257899999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHH
Q psy8969 522 DVSGYVAEEKVAIAAQ 537 (1230)
Q Consensus 522 ~~~~~~~~e~~~i~~~ 537 (1230)
.|..++.++....+.+
T Consensus 161 ~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 161 ACPLPSNEESLQWLQQ 176 (328)
T ss_pred eCCCcCHHHHHHHHHH
Confidence 9999999988766654
No 195
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.99 E-value=2.8e-09 Score=129.68 Aligned_cols=156 Identities=21% Similarity=0.373 Sum_probs=91.5
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe--EEEecCCcchhHH-------H-
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY--FRFSVGGMSDVAE-------I- 423 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~--~~~~~~~~~d~~~-------i- 423 (1230)
+|++|++.+++.+.-.+ ..+..++|+||||+|||++|++|+..+-.-- ..+....+.+.+- +
T Consensus 192 ~dv~Gq~~~~~al~~aa--------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~ 263 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAA--------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIK 263 (499)
T ss_pred HHhcCcHHHHhhhhhhc--------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccc
Confidence 57899999987654433 3456899999999999999999997652110 0111111110000 0
Q ss_pred ----h--hc---cccccc----cCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccC
Q psy8969 424 ----K--GH---RRTYVG----AMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLD 490 (1230)
Q Consensus 424 ----~--g~---~~~~~g----~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~ 490 (1230)
+ .| ....+| ..||.+ ....+.|+|||||+.+.. +....|++.|+..+.. +...-..
T Consensus 264 ~~Pf~~p~~s~s~~~~~ggg~~~~pG~i------~lA~~GvLfLDEi~e~~~----~~~~~L~~~LE~~~v~-i~r~g~~ 332 (499)
T TIGR00368 264 QRPFRSPHHSASKPALVGGGPIPLPGEI------SLAHNGVLFLDELPEFKR----SVLDALREPIEDGSIS-ISRASAK 332 (499)
T ss_pred cCCccccccccchhhhhCCccccchhhh------hccCCCeEecCChhhCCH----HHHHHHHHHHHcCcEE-EEecCcc
Confidence 0 00 000112 124443 344678999999998743 4567788877653311 0000001
Q ss_pred ccccCCceEEEEecCCC-----C------------------CCCHhhhcccce-eecCCCCHH
Q psy8969 491 VPVDLSRVLFICTANVI-----D------------------TIPEPLRDRMEM-IDVSGYVAE 529 (1230)
Q Consensus 491 ~~~d~s~v~~I~TaN~~-----~------------------~I~~~L~~R~~~-i~~~~~~~~ 529 (1230)
..+. .++.+|+|+|+- . .|+.||+|||++ +.+..+..+
T Consensus 333 ~~~p-a~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 333 IFYP-ARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred eecc-CCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 1122 478999999963 2 599999999997 466665444
No 196
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.6e-08 Score=118.70 Aligned_cols=223 Identities=20% Similarity=0.325 Sum_probs=137.9
Q ss_pred ccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC-----eEEEecCCcchhHHHhhcc-c-
Q psy8969 356 HYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE-----YFRFSVGGMSDVAEIKGHR-R- 428 (1230)
Q Consensus 356 ~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~-----~~~~~~~~~~d~~~i~g~~-~- 428 (1230)
.-+=+.-.+.+..++. ..+++. .|..+++|||||||||.+++-+++++..+ ++.+++-.......+...- +
T Consensus 19 l~~Re~ei~~l~~~l~-~~~~~~-~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 19 LPHREEEINQLASFLA-PALRGE-RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccHHHHHHHHHHHH-HHhcCC-CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 4444555555666653 334443 34458899999999999999999998765 7888876555433321110 0
Q ss_pred ----cccccCchhHHHHHHhhcC---CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEE
Q psy8969 429 ----TYVGAMPGKVIQCMKKTKT---ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFI 501 (1230)
Q Consensus 429 ----~~~g~~~g~i~~~~~~~~~---~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I 501 (1230)
-..|..-..+.+.+...-. ...||+|||||.+..... ..|++++.-.... -++|.+|
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----~~LY~L~r~~~~~------------~~~v~vi 160 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----EVLYSLLRAPGEN------------KVKVSII 160 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----hHHHHHHhhcccc------------ceeEEEE
Confidence 1123333344444433222 234777999999975422 5566554322111 4689999
Q ss_pred EecCCC---CCCCHhhhcccc--eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 502 CTANVI---DTIPEPLRDRME--MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 502 ~TaN~~---~~I~~~L~~R~~--~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
+.+|.. +.+++-+.+|+. .|.|++|+.+|...|+.... +.|+. .-.++++++..+.....++.| .
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~------~~~~~--~~~~~~~vl~lia~~~a~~~G--D 230 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV------EEGFS--AGVIDDDVLKLIAALVAAESG--D 230 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH------Hhhcc--CCCcCccHHHHHHHHHHHcCc--c
Confidence 999977 478888888875 47799999999999987754 44443 345788888888877777774 4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhh
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSD 609 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~ 609 (1230)
+|+.|. +||.+ .++++.... -.++.+.+..
T Consensus 231 AR~aid-ilr~A-~eiAe~~~~-~~v~~~~v~~ 260 (366)
T COG1474 231 ARKAID-ILRRA-GEIAEREGS-RKVSEDHVRE 260 (366)
T ss_pred HHHHHH-HHHHH-HHHHHhhCC-CCcCHHHHHH
Confidence 444443 34443 344443322 2355555543
No 197
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.96 E-value=7.6e-09 Score=113.63 Aligned_cols=171 Identities=19% Similarity=0.323 Sum_probs=103.5
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhC-----CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEe
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALN-----REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLID 455 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~-----~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillD 455 (1230)
...+.||||+|+|||.|..+|++++. ...+.++.....+ .++.+....-+..|...-...++|+||
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~---------~~~~~~~~~~~~~~~~~~~~~DlL~iD 104 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR---------EFADALRDGEIEEFKDRLRSADLLIID 104 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH---------HHHHHHHTTSHHHHHHHHCTSSEEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH---------HHHHHHHcccchhhhhhhhcCCEEEEe
Confidence 34588999999999999999998753 3444454322211 111111111223343334467899999
Q ss_pred cccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC---CCCHhhhcccc---eeecCCCCHH
Q psy8969 456 EVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID---TIPEPLRDRME---MIDVSGYVAE 529 (1230)
Q Consensus 456 EIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~---~I~~~L~~R~~---~i~~~~~~~~ 529 (1230)
.||.+... ..-..+|..+++.-. +....++|++...+. .+++.|++||. ++.+..+..+
T Consensus 105 Di~~l~~~--~~~q~~lf~l~n~~~-------------~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 105 DIQFLAGK--QRTQEELFHLFNRLI-------------ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp TGGGGTTH--HHHHHHHHHHHHHHH-------------HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred cchhhcCc--hHHHHHHHHHHHHHH-------------hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 99998531 112445555554321 223444444434433 56788999997 6899999999
Q ss_pred HHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 530 EKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 530 e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
++..|+++... +. .+.++++++.+|.+.+. ..+|.|+..|.++...
T Consensus 170 ~r~~il~~~a~-----~~-----~~~l~~~v~~~l~~~~~--~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 170 DRRRILQKKAK-----ER-----GIELPEEVIEYLARRFR--RDVRELEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHHHHH-----HT-----T--S-HHHHHHHHHHTT--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----Hh-----CCCCcHHHHHHHHHhhc--CCHHHHHHHHHHHHHH
Confidence 99999877652 33 44599999999998864 4689999888887643
No 198
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=98.95 E-value=7e-10 Score=109.54 Aligned_cols=68 Identities=34% Similarity=0.645 Sum_probs=67.2
Q ss_pred cCCCCCchhHHHHHHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccc
Q psy8969 686 VKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEEN 753 (1230)
Q Consensus 686 ~pkdgpsag~~~~~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N 753 (1230)
++|+||+.-.+|+.||+|+..++|+..+.++-|||.|.|.|.||-|+-..+++|++.|+++||+|++|
T Consensus 54 l~k~g~~~DLaIA~ailsa~~~~~~~~~~~~~GEl~L~G~ir~v~~~~~~~~~A~~~G~~~vivP~~N 121 (121)
T PF13541_consen 54 LKKEGPAFDLAIAIAILSAFGQIPIPEDTVFIGELGLDGEIRPVPGILPRIIEAKKLGFKRVIVPKAN 121 (121)
T ss_pred EEEeeeeehHHHHHHHHHhCCCcccCCCEEEEEEecCCccEEecCcHHHHHHHHHHCCCCEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999987
No 199
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.95 E-value=1.2e-08 Score=125.93 Aligned_cols=211 Identities=20% Similarity=0.316 Sum_probs=137.3
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcch---hHHHhhcc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSD---VAEIKGHR 427 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d---~~~i~g~~ 427 (1230)
++++|....-+++.+.+.... ..+..|||+|++|||||++|++|.... +.||+.++++.+.+ .+++.|+.
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~ 262 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHV 262 (509)
T ss_pred CceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcc
Confidence 457777777777777664321 224568899999999999999999875 47999999998875 24556654
Q ss_pred cc-ccccC---chhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 428 RT-YVGAM---PGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 428 ~~-~~g~~---~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
+. +.|+. +|.+ ....+..|||||||.+.. +....|+.+|+... |.. .-+......++-+|+|
T Consensus 263 ~g~~~ga~~~~~g~~------~~a~gGtL~ldeI~~L~~----~~Q~~Ll~~l~~~~---~~~-~g~~~~~~~~~RiI~~ 328 (509)
T PRK05022 263 KGAFTGAISNRSGKF------ELADGGTLFLDEIGELPL----ALQAKLLRVLQYGE---IQR-VGSDRSLRVDVRVIAA 328 (509)
T ss_pred ccccCCCcccCCcch------hhcCCCEEEecChhhCCH----HHHHHHHHHHhcCC---Eee-CCCCcceecceEEEEe
Confidence 42 22322 2322 123467899999999843 34566777765321 110 0000111135788888
Q ss_pred cCCC-------CCCCHhhhcccce--eecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhh
Q psy8969 504 ANVI-------DTIPEPLRDRMEM--IDVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRES 572 (1230)
Q Consensus 504 aN~~-------~~I~~~L~~R~~~--i~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~ 572 (1230)
||.. ..+.+.|..|+.+ |.++++-. +|... +.++++.+...+.|. ..+.++++++..|. .|..-+
T Consensus 329 t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~-L~~~fl~~~~~~~~~--~~~~~s~~a~~~L~-~y~WPG 404 (509)
T PRK05022 329 TNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLL-LAGYFLEQNRARLGL--RSLRLSPAAQAALL-AYDWPG 404 (509)
T ss_pred cCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHH-HHHHHHHHHHHHcCC--CCCCCCHHHHHHHH-hCCCCC
Confidence 8853 3577888889876 45555443 34333 445555665555554 34679999988875 677788
Q ss_pred hHHHHHHHHHHHHH
Q psy8969 573 GVRNLQKHIEKVTR 586 (1230)
Q Consensus 573 gvR~l~~~i~~i~r 586 (1230)
+||.|++.|+..+.
T Consensus 405 NvrEL~~~i~ra~~ 418 (509)
T PRK05022 405 NVRELEHVISRAAL 418 (509)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988664
No 200
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.92 E-value=2e-08 Score=123.15 Aligned_cols=208 Identities=18% Similarity=0.302 Sum_probs=129.3
Q ss_pred cccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHH-----------hCCCeEEEecCCcch---h
Q psy8969 355 DHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARA-----------LNREYFRFSVGGMSD---V 420 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~-----------l~~~~~~~~~~~~~d---~ 420 (1230)
+++|...+-+++.+.+...- ..+..+|+.|+|||||+.+|++|-.. -+.||+.++++.+.+ +
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 57888777766666653211 22356889999999999999999877 457999999998865 3
Q ss_pred HHHhhcccc-cccc----CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 421 AEIKGHRRT-YVGA----MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 421 ~~i~g~~~~-~~g~----~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
+++.|+... +.|+ .+|.+ ....+..|||||||.+.. .....|+.+|+..+-.. +.....++
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~------e~A~gGTLfLdeI~~Lp~----~~Q~kLl~~L~e~~~~r-~G~~~~~~--- 361 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLF------EIAHGGTLFLDEIGEMPL----PLQTRLLRVLEEKEVTR-VGGHQPVP--- 361 (538)
T ss_pred HHhcCCccccccCccccccCCch------hccCCCEEEEcChHhCCH----HHHHHHHhhhhcCeEEe-cCCCceec---
Confidence 556665442 2333 23432 123567999999999843 34567777775422110 00001112
Q ss_pred CceEEEEecCCC-------CCCCHhhhccccee--ecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHH--
Q psy8969 496 SRVLFICTANVI-------DTIPEPLRDRMEMI--DVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQ-- 562 (1230)
Q Consensus 496 s~v~~I~TaN~~-------~~I~~~L~~R~~~i--~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~-- 562 (1230)
.+|-+|+|||.. ....+.|..|+.++ .++++-+ +|...++..+| .+.....+. .++++++.
T Consensus 362 ~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl-~~~~~~~~~-----~~~~~a~~~~ 435 (538)
T PRK15424 362 VDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFL-KQSLAALSA-----PFSAALRQGL 435 (538)
T ss_pred cceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHH-HHHHHHcCC-----CCCHHHHHhh
Confidence 246788887743 12445677888764 5554433 34445554444 443333333 25555553
Q ss_pred ----HHHHHhhhhhhHHHHHHHHHHHHH
Q psy8969 563 ----VLIKNYCRESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 563 ----~li~~~~~e~gvR~l~~~i~~i~r 586 (1230)
.++..|..-++||.|++.++.++-
T Consensus 436 ~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 436 QQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 456788889999999999998664
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=8.6e-09 Score=119.66 Aligned_cols=153 Identities=19% Similarity=0.228 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE---EecCCcchhHHH--hhcccc-cc-
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR---FSVGGMSDVAEI--KGHRRT-YV- 431 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~---~~~~~~~d~~~i--~g~~~~-~~- 431 (1230)
++..+++|... .+ .-+..+||+||+|+||+++|+.+|+.+....-. -.+|...+-..+ ..|..- ++
T Consensus 6 ~~~~~~~l~~~------~~-rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~ 78 (342)
T PRK06964 6 QTDDWNRLQAL------RA-RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVR 78 (342)
T ss_pred cHHHHHHHHHh------cC-CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe
Confidence 45666665552 22 556789999999999999999999999653310 011111110000 001000 00
Q ss_pred -----------------------c--------cC-chhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHh
Q psy8969 432 -----------------------G--------AM-PGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLE 474 (1230)
Q Consensus 432 -----------------------g--------~~-~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~ 474 (1230)
| .. -..|++..... .....|+|||++|+++. ..+++||.
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~----~AaNaLLK 154 (342)
T PRK06964 79 PEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV----AAANALLK 154 (342)
T ss_pred cccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH----HHHHHHHH
Confidence 0 00 01233222221 12245999999999853 46789999
Q ss_pred hcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHH
Q psy8969 475 MLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQ 537 (1230)
Q Consensus 475 ~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~ 537 (1230)
.|+.- -.+++||++|+.++.|+|.++|||..|.+..++.++....+..
T Consensus 155 tLEEP---------------p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 155 TLEEP---------------PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred HhcCC---------------CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 98742 3578999999999999999999999999999999888766654
No 202
>PHA00733 hypothetical protein
Probab=98.91 E-value=4.8e-10 Score=112.09 Aligned_cols=83 Identities=25% Similarity=0.479 Sum_probs=70.1
Q ss_pred CCCCccCCCCCCCCCCchhhhcc--cc---ccCCCCcccCCcccccccccCchhhhhhcccccCCCCEeecccccCcccc
Q psy8969 1133 SSENNVCPECKKTFSSAHHMKVH--LR---IHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFK 1207 (1230)
Q Consensus 1133 ~~kpy~C~~CgK~F~s~s~Lk~H--~R---~HTGEKPykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF~ 1207 (1230)
..+++.|.+|++.|.....|..| ++ .+.+++||.|+ .|++.|.+.+.|..|+++| +.+|.|. .|++.|.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~--~Cgk~Fss~s~L~~H~r~h--~~~~~C~--~CgK~F~ 110 (128)
T PHA00733 37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCP--LCLMPFSSSVSLKQHIRYT--EHSKVCP--VCGKEFR 110 (128)
T ss_pred hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCC--CCCCcCCCHHHHHHHHhcC--CcCccCC--CCCCccC
Confidence 35678999999999887776665 11 33458999995 6999999999999999988 4689994 7999999
Q ss_pred chhhHHHHhhhccC
Q psy8969 1208 TSGDLQKHVRTHTD 1221 (1230)
Q Consensus 1208 ~ks~LkrH~R~HtG 1221 (1230)
...+|.+|++.+|+
T Consensus 111 ~~~sL~~H~~~~h~ 124 (128)
T PHA00733 111 NTDSTLDHVCKKHN 124 (128)
T ss_pred CHHHHHHHHHHhcC
Confidence 99999999998776
No 203
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=3.4e-09 Score=122.14 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE--EecCCcchhHHH--hhccccc-c--
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR--FSVGGMSDVAEI--KGHRRTY-V-- 431 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~--~~~~~~~d~~~i--~g~~~~~-~-- 431 (1230)
+..+.+.|...+... .-+..+||.||+|+||+++|+++|+.+...--. -.+|...+-..+ ..|..-+ +
T Consensus 7 ~~~~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 7 LQPTYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred hHHHHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc
Confidence 455566666655322 334579999999999999999999998642110 011111111111 1111111 1
Q ss_pred --ccC--chhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEE
Q psy8969 432 --GAM--PGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502 (1230)
Q Consensus 432 --g~~--~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~ 502 (1230)
|.. -..|++..... .....|++||++|++.. ..+++||..|+.- -.+++||+
T Consensus 82 ~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~----~AaNaLLKtLEEP---------------p~~~~fiL 142 (325)
T PRK06871 82 IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE----AAANALLKTLEEP---------------RPNTYFLL 142 (325)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCH----HHHHHHHHHhcCC---------------CCCeEEEE
Confidence 100 11233322221 12345999999999853 4678999998752 35789999
Q ss_pred ecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHH
Q psy8969 503 TANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQ 537 (1230)
Q Consensus 503 TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~ 537 (1230)
+|+.++.|.|.++|||..+.+..++.++....+.+
T Consensus 143 ~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 143 QADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred EECChHhCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999987665544
No 204
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.90 E-value=4.6e-09 Score=132.40 Aligned_cols=172 Identities=15% Similarity=0.214 Sum_probs=99.0
Q ss_pred hhcccccChHHHHHHHHHHHHHhhhc--------------CCCCC-ceEEEeCCCCCCchHHHHHHHHHhCC-------C
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQLK--------------GTTQG-KILCFYGPPGVGKTSIAKSIARALNR-------E 408 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~~~--------------~~~~~-~~llL~GPPG~GKTslak~iA~~l~~-------~ 408 (1230)
-+-..+||+++||+.|+=.|--.... ...+| ..|||+|+||||||.+|++|++...+ +
T Consensus 447 SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~ 526 (915)
T PTZ00111 447 SFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKS 526 (915)
T ss_pred HhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCC
Confidence 35567999999999886544221110 01122 36999999999999999999997543 2
Q ss_pred eEEEecCCcchhHHHhhc-cccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhh
Q psy8969 409 YFRFSVGGMSDVAEIKGH-RRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDH 487 (1230)
Q Consensus 409 ~~~~~~~~~~d~~~i~g~-~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~ 487 (1230)
+..+.+.+. ....+. ...|. -.+|.+ ....+.+++|||||++.. +..++|+++|+..+. .+-.
T Consensus 527 ~s~vgLTa~---~~~~d~~tG~~~-le~GaL------vlAdgGtL~IDEidkms~----~~Q~aLlEaMEqqtI-sI~K- 590 (915)
T PTZ00111 527 SSSVGLTAS---IKFNESDNGRAM-IQPGAV------VLANGGVCCIDELDKCHN----ESRLSLYEVMEQQTV-TIAK- 590 (915)
T ss_pred Cccccccch---hhhcccccCccc-ccCCcE------EEcCCCeEEecchhhCCH----HHHHHHHHHHhCCEE-EEec-
Confidence 332222111 110100 00010 112221 234567999999999843 346789998864321 0000
Q ss_pred ccCcccc-CCceEEEEecCCCC-------------CCCHhhhccccee-ecCCCCHHHHHHHHHHhh
Q psy8969 488 YLDVPVD-LSRVLFICTANVID-------------TIPEPLRDRMEMI-DVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 488 ~~~~~~d-~s~v~~I~TaN~~~-------------~I~~~L~~R~~~i-~~~~~~~~e~~~i~~~~l 539 (1230)
.++... ..++-+|+|+|+.. .+|++|+|||+.| .+-.+..++.-..+..|+
T Consensus 591 -aGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 591 -AGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred -CCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHH
Confidence 011111 24789999999852 6789999999865 444555554433333333
No 205
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.90 E-value=6.8e-09 Score=125.48 Aligned_cols=193 Identities=15% Similarity=0.240 Sum_probs=118.4
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhC-----CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEec
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALN-----REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDE 456 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~-----~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDE 456 (1230)
..|+|+||+|+|||.|+++|++.+. ...+.++...+.. ++.. . ++...+ .++.+...-...+|++|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~--~~~~---~-l~~~~~-~~~~~~~~~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR--KAVD---I-LQKTHK-EIEQFKNEICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH--HHHH---H-HHHhhh-HHHHHHHHhccCCEEEEec
Confidence 4688999999999999999999763 3444444322211 1110 0 111001 2233333333567999999
Q ss_pred ccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC----CCCCHhhhcccc---eeecCCCCHH
Q psy8969 457 VDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI----DTIPEPLRDRME---MIDVSGYVAE 529 (1230)
Q Consensus 457 IDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~----~~I~~~L~~R~~---~i~~~~~~~~ 529 (1230)
|+.+... ......|..+++.. .+... .+|+|+|.. ..+++.|++||. ++.+.++..+
T Consensus 215 iq~l~~k--~~~~e~lf~l~N~~-------------~~~~k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e 278 (450)
T PRK14087 215 VQFLSYK--EKTNEIFFTIFNNF-------------IENDK-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNK 278 (450)
T ss_pred cccccCC--HHHHHHHHHHHHHH-------------HHcCC-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHH
Confidence 9987431 11123444444331 22223 356666643 356789999997 7899999999
Q ss_pred HHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhh
Q psy8969 530 EKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSD 609 (1230)
Q Consensus 530 e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~ 609 (1230)
++.+|+++.+- ..|+. +.++++++..|++.. .+.+|.|+..+.++..... .... ...||.+.+.+
T Consensus 279 ~r~~iL~~~~~-----~~gl~---~~l~~evl~~Ia~~~--~gd~R~L~gaL~~l~~~a~---~~~~--~~~it~~~v~~ 343 (450)
T PRK14087 279 TATAIIKKEIK-----NQNIK---QEVTEEAINFISNYY--SDDVRKIKGSVSRLNFWSQ---QNPE--EKIITIEIVSD 343 (450)
T ss_pred HHHHHHHHHHH-----hcCCC---CCCCHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHh---cccC--CCCCCHHHHHH
Confidence 99999988652 34542 479999999999875 4678999888888763221 1110 11366666666
Q ss_pred hcC
Q psy8969 610 FVG 612 (1230)
Q Consensus 610 ~~~ 612 (1230)
.++
T Consensus 344 ~l~ 346 (450)
T PRK14087 344 LFR 346 (450)
T ss_pred HHh
Confidence 664
No 206
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.90 E-value=7.8e-09 Score=120.78 Aligned_cols=191 Identities=20% Similarity=0.361 Sum_probs=125.5
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh----CCCeEEEecCCcch---hHHHhhcccc-cccc---CchhHHHHHHhhcC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL----NREYFRFSVGGMSD---VAEIKGHRRT-YVGA---MPGKVIQCMKKTKT 447 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l----~~~~~~~~~~~~~d---~~~i~g~~~~-~~g~---~~g~i~~~~~~~~~ 447 (1230)
+.+..+|+.|++||||+.+|+.|...- +.||+.+|++.... ++++-||... |.|+ .+|.+ ...
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glf------e~A 172 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLF------EQA 172 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchh------eec
Confidence 456779999999999999999887543 55999999887765 4567777654 3453 34543 234
Q ss_pred CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCC--CCCCCH--hhhcccc--ee
Q psy8969 448 ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANV--IDTIPE--PLRDRME--MI 521 (1230)
Q Consensus 448 ~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~--~~~I~~--~L~~R~~--~i 521 (1230)
+...+|||||..+.. .....|+.+||...-.. .-+-.....+|.+|++||. .+.+-. -|.+|.. +|
T Consensus 173 ~GGtLfLDEI~~LP~----~~Q~kLl~~le~g~~~r----vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I 244 (403)
T COG1221 173 NGGTLFLDEIHRLPP----EGQEKLLRVLEEGEYRR----VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTI 244 (403)
T ss_pred CCCEEehhhhhhCCH----hHHHHHHHHHHcCceEe----cCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCcee
Confidence 567999999998743 34567888887632111 1111123457888877763 233333 4555554 35
Q ss_pred ecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q psy8969 522 DVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRK 587 (1230)
Q Consensus 522 ~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~ 587 (1230)
.++++-. +|+... ..|.+.....+.+++... .+++++..++ .|.-.++||.|++.++.+|-.
T Consensus 245 ~LPpLrER~~Di~~L-~e~Fl~~~~~~l~~~~~~--~~~~a~~~L~-~y~~pGNirELkN~Ve~~~~~ 308 (403)
T COG1221 245 TLPPLRERKEDILLL-AEHFLKSEARRLGLPLSV--DSPEALRALL-AYDWPGNIRELKNLVERAVAQ 308 (403)
T ss_pred cCCChhhchhhHHHH-HHHHHHHHHHHcCCCCCC--CCHHHHHHHH-hCCCCCcHHHHHHHHHHHHHH
Confidence 6665543 333333 455666677777775433 3377887776 677899999999999998854
No 207
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.89 E-value=2.8e-08 Score=115.67 Aligned_cols=212 Identities=19% Similarity=0.326 Sum_probs=134.9
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcchh---HHHhhcc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSDV---AEIKGHR 427 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d~---~~i~g~~ 427 (1230)
++++|....-+++.+.+.... ..+..|++.|+|||||+++|++|-.... .||+.++++.+.+. .++.|+.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~ 81 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHE 81 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHcccc
Confidence 457787777777777764322 2235688999999999999999987654 69999999987652 2344554
Q ss_pred cc-ccccC---chhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 428 RT-YVGAM---PGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 428 ~~-~~g~~---~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
.. +.|+. +|.+ ....+..+||||||.+.. .....|+.+|+..+ |...--..+.. .++.+|+|
T Consensus 82 ~~~~~g~~~~~~g~l------~~a~gGtL~l~~i~~L~~----~~Q~~L~~~l~~~~---~~~~g~~~~~~-~~~RiI~~ 147 (326)
T PRK11608 82 AGAFTGAQKRHPGRF------ERADGGTLFLDELATAPM----LVQEKLLRVIEYGE---LERVGGSQPLQ-VNVRLVCA 147 (326)
T ss_pred ccccCCcccccCCch------hccCCCeEEeCChhhCCH----HHHHHHHHHHhcCc---EEeCCCCceee-ccEEEEEe
Confidence 32 22322 2322 233467999999999843 34566777765422 11000000111 25788888
Q ss_pred cCCC-------CCCCHhhhcccce--eecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhh
Q psy8969 504 ANVI-------DTIPEPLRDRMEM--IDVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRES 572 (1230)
Q Consensus 504 aN~~-------~~I~~~L~~R~~~--i~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~ 572 (1230)
+|.. ..+.+.|+.|+.+ |.++++-. +|...++..+ +.+...+.|... ...++++++..+. .|..-+
T Consensus 148 s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~f-l~~~~~~~~~~~-~~~~s~~al~~L~-~y~WPG 224 (326)
T PRK11608 148 TNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHF-AIQMCRELGLPL-FPGFTERARETLL-NYRWPG 224 (326)
T ss_pred CchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHH-HHHHHHHhCCCC-CCCCCHHHHHHHH-hCCCCc
Confidence 8753 4677899999964 66666554 4555555444 444444444321 1368899988876 566778
Q ss_pred hHHHHHHHHHHHHH
Q psy8969 573 GVRNLQKHIEKVTR 586 (1230)
Q Consensus 573 gvR~l~~~i~~i~r 586 (1230)
+||.|++.++.++.
T Consensus 225 NvrEL~~vl~~a~~ 238 (326)
T PRK11608 225 NIRELKNVVERSVY 238 (326)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888653
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.89 E-value=4.6e-09 Score=104.39 Aligned_cols=129 Identities=22% Similarity=0.291 Sum_probs=73.0
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCC---eEEEecCCcchhHHH-----hhccccccccCchhHHHHHHhhcCCC-CE
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNRE---YFRFSVGGMSDVAEI-----KGHRRTYVGAMPGKVIQCMKKTKTEN-PL 451 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~---~~~~~~~~~~d~~~i-----~g~~~~~~g~~~g~i~~~~~~~~~~~-pv 451 (1230)
+..++|+||||+|||++++.||..++.. ++.++.......... ..............+...+..+.... .|
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5679999999999999999999999986 666665433321110 00011111112223344455555555 79
Q ss_pred EEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCC-CCCCCHhhhcccce
Q psy8969 452 VLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANV-IDTIPEPLRDRMEM 520 (1230)
Q Consensus 452 illDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~-~~~I~~~L~~R~~~ 520 (1230)
|||||++.+... ....++..... ...........+..+|+|+|. ...++..++.|++.
T Consensus 82 iiiDei~~~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (148)
T smart00382 82 LILDEITSLLDA----EQEALLLLLEE-------LRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDR 140 (148)
T ss_pred EEEECCcccCCH----HHHHHHHhhhh-------hHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccce
Confidence 999999987542 12221111100 000001122356788888886 55566777766653
No 209
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.88 E-value=2.5e-08 Score=126.54 Aligned_cols=225 Identities=19% Similarity=0.238 Sum_probs=137.9
Q ss_pred cccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcch---hHHHhhccc
Q psy8969 355 DHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSD---VAEIKGHRR 428 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d---~~~i~g~~~ 428 (1230)
+++|....-+++++.+...- ..+..|||+|+|||||+++|++|..... .||+.++++.+.+ .+++.|+..
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~ 401 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR 401 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC
Confidence 45666666666666553221 1234588999999999999999998764 6999999998865 244555431
Q ss_pred cc-cccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC
Q psy8969 429 TY-VGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI 507 (1230)
Q Consensus 429 ~~-~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~ 507 (1230)
.. -+..+|.+ ....+..|||||||.+.. +....|+.+|+...... +..-..+++ ++-+|+|||..
T Consensus 402 ~~~~~~~~g~~------~~a~~GtL~ldei~~l~~----~~Q~~Ll~~l~~~~~~~-~~~~~~~~~---~~riI~~t~~~ 467 (638)
T PRK11388 402 TDSENGRLSKF------ELAHGGTLFLEKVEYLSP----ELQSALLQVLKTGVITR-LDSRRLIPV---DVRVIATTTAD 467 (638)
T ss_pred cCccCCCCCce------eECCCCEEEEcChhhCCH----HHHHHHHHHHhcCcEEe-CCCCceEEe---eEEEEEeccCC
Confidence 00 01122322 123467999999999843 45677888875422100 000001111 46788888853
Q ss_pred -------CCCCHhhhccccee--ecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 508 -------DTIPEPLRDRMEMI--DVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 508 -------~~I~~~L~~R~~~i--~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
..+.+.|..|+..+ .++++-. +|...++..++ .+...+.+- .+.++++++..|. .|..-++||.
T Consensus 468 l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l-~~~~~~~~~---~~~~s~~a~~~L~-~y~WPGNvre 542 (638)
T PRK11388 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKL-RSLEKRFST---RLKIDDDALARLV-SYRWPGNDFE 542 (638)
T ss_pred HHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHH-HHHHHHhCC---CCCcCHHHHHHHH-cCCCCChHHH
Confidence 35667778888764 5555543 35555555544 444334443 3578999988876 6777899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhc
Q psy8969 577 LQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFV 611 (1230)
Q Consensus 577 l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~ 611 (1230)
|++.|+.++.. . ..-.|+.+++...+
T Consensus 543 L~~~l~~~~~~-------~--~~~~i~~~~lp~~~ 568 (638)
T PRK11388 543 LRSVIENLALS-------S--DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHHHHHh-------C--CCCeecHHHCchhh
Confidence 99998875531 1 11246767766544
No 210
>KOG1942|consensus
Probab=98.86 E-value=2.2e-08 Score=109.11 Aligned_cols=61 Identities=25% Similarity=0.489 Sum_probs=47.4
Q ss_pred cccccChHHHHHH---HHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC--CCeEEEecCCc
Q psy8969 353 DDDHYGMEDVKKR---ILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN--REYFRFSVGGM 417 (1230)
Q Consensus 353 ~~d~~G~~~vK~~---i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~--~~~~~~~~~~~ 417 (1230)
-.-..||+++++. |.+.+.. ....|+.+||.||||+|||.||-+||.+|| .||..+..+.+
T Consensus 37 ~~g~vGQ~~AReAagiivdlik~----KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv 102 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVDLIKS----KKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV 102 (456)
T ss_pred ccccccchhhhhhhhHHHHHHHh----hhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhh
Confidence 3568899999976 4444433 335568899999999999999999999997 57887765544
No 211
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.84 E-value=2.8e-08 Score=118.10 Aligned_cols=216 Identities=19% Similarity=0.327 Sum_probs=145.6
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC---CeEEEecCCcch---hHHHhh
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR---EYFRFSVGGMSD---VAEIKG 425 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~---~~~~~~~~~~~d---~~~i~g 425 (1230)
...+.+|...+-+.+.+.+..- .. ....+|+.|++||||-.+||+|-+...| ||+.++++.+.. ++|+-|
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv--A~--s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG 214 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV--AP--SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG 214 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH--hC--CCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc
Confidence 4567778777777777666422 21 2245889999999999999999998776 999999998876 577888
Q ss_pred cccc-ccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEec
Q psy8969 426 HRRT-YVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTA 504 (1230)
Q Consensus 426 ~~~~-~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~Ta 504 (1230)
|-+. +-|+...++. .| .......+|||||..+.- +...-||.+|... .|..---..++. -+|-||++|
T Consensus 215 hekGAFTGA~~~r~G-~f--E~A~GGTLfLDEI~~mpl----~~Q~kLLRvLqe~---~~~rvG~~~~i~-vdvRiIaaT 283 (464)
T COG2204 215 HEKGAFTGAITRRIG-RF--EQANGGTLFLDEIGEMPL----ELQVKLLRVLQER---EFERVGGNKPIK-VDVRIIAAT 283 (464)
T ss_pred ccccCcCCcccccCc-ce--eEcCCceEEeeccccCCH----HHHHHHHHHHHcC---eeEecCCCcccc-eeeEEEeec
Confidence 8763 3455432111 01 223456999999998732 3456788887542 222111111122 257899999
Q ss_pred CCC-------CCCCHhhhcccceeecCCCCHHHH---HHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhH
Q psy8969 505 NVI-------DTIPEPLRDRMEMIDVSGYVAEEK---VAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 505 N~~-------~~I~~~L~~R~~~i~~~~~~~~e~---~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gv 574 (1230)
|.- ...-+.|.-|+.|+.+.=++..|. +..+.+|++.+..++.|. ....++++++..+. .|..-++|
T Consensus 284 ~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~--~~~~~s~~a~~~L~-~y~WPGNV 360 (464)
T COG2204 284 NRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR--PPKGFSPEALAALL-AYDWPGNV 360 (464)
T ss_pred CcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCC--CCCCCCHHHHHHHH-hCCCChHH
Confidence 943 245566777888876555554332 455567777888888874 45678899988876 67778899
Q ss_pred HHHHHHHHHHH
Q psy8969 575 RNLQKHIEKVT 585 (1230)
Q Consensus 575 R~l~~~i~~i~ 585 (1230)
|.|+..++..+
T Consensus 361 REL~N~ver~~ 371 (464)
T COG2204 361 RELENVVERAV 371 (464)
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 212
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.82 E-value=6.3e-08 Score=119.56 Aligned_cols=210 Identities=19% Similarity=0.302 Sum_probs=130.8
Q ss_pred cccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcch---hHHHhhccc
Q psy8969 355 DHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSD---VAEIKGHRR 428 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d---~~~i~g~~~ 428 (1230)
+++|....-+++++.+...-. .+..|+|+|++||||+.+|++|-... +.||+.+++..+.+ +.++-|+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~ 280 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAP 280 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCC
Confidence 567766665666665532111 23458899999999999999997654 36899999998876 234555443
Q ss_pred -cccccC---chhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEec
Q psy8969 429 -TYVGAM---PGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTA 504 (1230)
Q Consensus 429 -~~~g~~---~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~Ta 504 (1230)
.|.|+. +|.+ . ...+..|||||||.+.. .....|+.+|+.. .|...--.-.. ..+|-+|+||
T Consensus 281 ~~~~~~~~~~~g~~----e--~a~~GtL~LdeI~~L~~----~~Q~~Ll~~l~~~---~~~~~g~~~~~-~~~vRiI~st 346 (520)
T PRK10820 281 GAYPNALEGKKGFF----E--QANGGSVLLDEIGEMSP----RMQAKLLRFLNDG---TFRRVGEDHEV-HVDVRVICAT 346 (520)
T ss_pred CCcCCcccCCCChh----h--hcCCCEEEEeChhhCCH----HHHHHHHHHHhcC---CcccCCCCcce-eeeeEEEEec
Confidence 222222 2222 1 23467899999999843 3456677776532 12110000001 1356788877
Q ss_pred CCC-------CCCCHhhhcccce--eecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhh
Q psy8969 505 NVI-------DTIPEPLRDRMEM--IDVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESG 573 (1230)
Q Consensus 505 N~~-------~~I~~~L~~R~~~--i~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~g 573 (1230)
+.. ....+.|..|+.+ |.++++-+ ++...+ .++++.+...+.|.. ...++++++..|. .|..-++
T Consensus 347 ~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L-~~~fl~~~~~~~g~~--~~~ls~~a~~~L~-~y~WPGN 422 (520)
T PRK10820 347 QKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPL-TELFVARFADEQGVP--RPKLAADLNTVLT-RYGWPGN 422 (520)
T ss_pred CCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHH-HHHHHHHHHHHcCCC--CCCcCHHHHHHHh-cCCCCCH
Confidence 643 2456778999875 56666554 343333 455556666666653 3468999988775 6666889
Q ss_pred HHHHHHHHHHHHH
Q psy8969 574 VRNLQKHIEKVTR 586 (1230)
Q Consensus 574 vR~l~~~i~~i~r 586 (1230)
||.|++.|+.++.
T Consensus 423 vreL~nvl~~a~~ 435 (520)
T PRK10820 423 VRQLKNAIYRALT 435 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887553
No 213
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.82 E-value=7.4e-09 Score=125.03 Aligned_cols=74 Identities=19% Similarity=0.414 Sum_probs=60.6
Q ss_pred ccCCCCCCCCCCchhhhccccccCCCCcccCCccccccccc----------CchhhhhhcccccCCCCEeecccccCccc
Q psy8969 1137 NVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFS----------TQYSRKAHIRTHTGEKPYRCAHEFCSKSF 1206 (1230)
Q Consensus 1137 y~C~~CgK~F~s~s~Lk~H~R~HTGEKPykCpve~CgKsF~----------~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF 1206 (1230)
+.|+ ||+.| .+..|..|+++|+++||+.|+ +|++.|. ..+.|+.|+.++ |.+++.|. .||+.|
T Consensus 479 v~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~--fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~--~Cgk~V 551 (567)
T PLN03086 479 LQCP-CGVVL-EKEQMVQHQASTCPLRLITCR--FCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCD--SCGRSV 551 (567)
T ss_pred ccCC-CCCCc-chhHHHhhhhccCCCCceeCC--CCCCccccCccccchhhhhhhHHHHHHhc-CCcceEcc--ccCCee
Confidence 4588 99766 568999999999999999995 6999995 245899999997 99999994 799999
Q ss_pred cchhhHHHHhhh
Q psy8969 1207 KTSGDLQKHVRT 1218 (1230)
Q Consensus 1207 ~~ks~LkrH~R~ 1218 (1230)
..+ +|..|+-.
T Consensus 552 rlr-dm~~H~~~ 562 (567)
T PLN03086 552 MLK-EMDIHQIA 562 (567)
T ss_pred eeh-hHHHHHHH
Confidence 654 67888653
No 214
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.81 E-value=8.7e-08 Score=122.48 Aligned_cols=213 Identities=18% Similarity=0.280 Sum_probs=133.9
Q ss_pred cccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcch---hHHHhhccc
Q psy8969 355 DHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSD---VAEIKGHRR 428 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d---~~~i~g~~~ 428 (1230)
+++|...+.+++++.+.... .....|++.|+||||||++|++|.... +.||+.+++..+.+ ..++.||.+
T Consensus 377 ~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~ 452 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHER 452 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccc
Confidence 68888888888777664321 223568899999999999999998865 46999999988764 234556644
Q ss_pred c-ccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC
Q psy8969 429 T-YVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI 507 (1230)
Q Consensus 429 ~-~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~ 507 (1230)
. +.|+...... .+ ....+.++||||||.+.. +....|+.+|+... |... -+...-..+|-+|+|||..
T Consensus 453 ~~~~g~~~~~~g-~l--e~a~~GtL~Ldei~~L~~----~~Q~~L~~~l~~~~---~~~~-g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 453 GAFTGASAQRIG-RF--ELADKSSLFLDEVGDMPL----ELQPKLLRVLQEQE---FERL-GSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred ccccccccchhh-HH--HhcCCCeEEEechhhCCH----HHHHHHHHHHHhCC---EEeC-CCCCcccceEEEEEeCCCC
Confidence 2 2233221111 12 233467999999999743 44567777765421 1110 0001112467888888753
Q ss_pred -------CCCCHhhhcccce--eecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHH
Q psy8969 508 -------DTIPEPLRDRMEM--IDVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN 576 (1230)
Q Consensus 508 -------~~I~~~L~~R~~~--i~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~ 576 (1230)
..+.+.|..|+.+ |.++++-. +|...++.. ++.+...+.|-.. ..++++++..|. .|..-++||.
T Consensus 522 l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~-~l~~~~~~~~~~~--~~~s~~al~~L~-~y~WPGNvrE 597 (686)
T PRK15429 522 LKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKA-FTFKIARRMGRNI--DSIPAETLRTLS-NMEWPGNVRE 597 (686)
T ss_pred HHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHH-HHHHHHHHcCCCC--CCcCHHHHHHHH-hCCCCCcHHH
Confidence 2455667778775 45555443 344444444 4455555554422 358899988875 6677889999
Q ss_pred HHHHHHHHHH
Q psy8969 577 LQKHIEKVTR 586 (1230)
Q Consensus 577 l~~~i~~i~r 586 (1230)
|++.|+.++.
T Consensus 598 L~~~i~~a~~ 607 (686)
T PRK15429 598 LENVIERAVL 607 (686)
T ss_pred HHHHHHHHHH
Confidence 9999988663
No 215
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.80 E-value=5.7e-08 Score=119.21 Aligned_cols=208 Identities=19% Similarity=0.314 Sum_probs=130.6
Q ss_pred cccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcch---hHHHhhccc
Q psy8969 355 DHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSD---VAEIKGHRR 428 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d---~~~i~g~~~ 428 (1230)
+++|....-+++.+.+...- .....+|+.|++||||+++|++|-... +.||+.++++.+.+ .+++.|+..
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~ 288 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEE 288 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcc
Confidence 57888777777766653211 123568899999999999999998764 46999999988865 345666644
Q ss_pred c-ccccC----chhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 429 T-YVGAM----PGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 429 ~-~~g~~----~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
. +.|+. +|.+ . ...+..|||||||.+.. +....|+.+|+..+ |..---..+. ..+|-+|+|
T Consensus 289 gaftga~~~~~~Gl~----e--~A~gGTLfLdeI~~Lp~----~~Q~~Ll~~L~~~~---~~r~g~~~~~-~~dvRiIaa 354 (526)
T TIGR02329 289 GAFTGARRGGRTGLI----E--AAHRGTLFLDEIGEMPL----PLQTRLLRVLEERE---VVRVGGTEPV-PVDVRVVAA 354 (526)
T ss_pred cccccccccccccch----h--hcCCceEEecChHhCCH----HHHHHHHHHHhcCc---EEecCCCcee-eecceEEec
Confidence 2 23332 2322 1 23467899999999843 34567777775422 1110000011 124567877
Q ss_pred cCCC-------CCCCHhhhcccce--eecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHH------HHH
Q psy8969 504 ANVI-------DTIPEPLRDRMEM--IDVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQV------LIK 566 (1230)
Q Consensus 504 aN~~-------~~I~~~L~~R~~~--i~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~------li~ 566 (1230)
||.. ..+.+.|..|+.+ |.++++-. +|...++..+| .+.....+ +.++++++.. .+.
T Consensus 355 t~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl-~~~~~~~~-----~~~~~~a~~~~~~~~~~L~ 428 (526)
T TIGR02329 355 THCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYL-VQAAAALR-----LPDSEAAAQVLAGVADPLQ 428 (526)
T ss_pred cCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHH-HHHHHHcC-----CCCCHHHHHHhHHHHHHHH
Confidence 7743 2455577778864 56665543 45555555544 44433333 3477777665 256
Q ss_pred HhhhhhhHHHHHHHHHHHHH
Q psy8969 567 NYCRESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 567 ~~~~e~gvR~l~~~i~~i~r 586 (1230)
.|..-++||.|++.++.++.
T Consensus 429 ~y~WPGNvrEL~nvier~~i 448 (526)
T TIGR02329 429 RYPWPGNVRELRNLVERLAL 448 (526)
T ss_pred hCCCCchHHHHHHHHHHHHH
Confidence 88889999999999988664
No 216
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=4.4e-08 Score=112.79 Aligned_cols=154 Identities=15% Similarity=0.183 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-EecCCcchhHHH--hhccccc-cc--
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-FSVGGMSDVAEI--KGHRRTY-VG-- 432 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-~~~~~~~d~~~i--~g~~~~~-~g-- 432 (1230)
+..+.+++...+.. ..-+..+||.||.|+||+++|+++|+.+...--. -.+|...+-..+ ..|..-+ +.
T Consensus 8 l~~~~~~l~~~~~~-----~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 8 LVPVWQNWKAGLDA-----GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 45666666665532 2344579999999999999999999998532100 011111111111 1121111 11
Q ss_pred ---c-C-chhHHHHHHhh-----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEE
Q psy8969 433 ---A-M-PGKVIQCMKKT-----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502 (1230)
Q Consensus 433 ---~-~-~g~i~~~~~~~-----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~ 502 (1230)
. . -..|++..... .....|++||++|+++. ..+++||+.|+.- -.+++||+
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~----~AaNaLLKtLEEP---------------p~~t~fiL 143 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE----SASNALLKTLEEP---------------APNCLFLL 143 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCH----HHHHHHHHHhcCC---------------CCCeEEEE
Confidence 0 0 01222222211 11245999999999853 4678999998752 25789999
Q ss_pred ecCCCCCCCHhhhcccceeecCCCCHHHHHHHHH
Q psy8969 503 TANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 503 TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~ 536 (1230)
+|+.++.|.|.++|||..+.+..++.++....+.
T Consensus 144 ~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 144 VTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred EECChhhChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 9999999999999999999999999888766554
No 217
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.3e-08 Score=117.09 Aligned_cols=153 Identities=18% Similarity=0.231 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcch--hHHHhhcccc-ccccCc
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSD--VAEIKGHRRT-YVGAMP 435 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d--~~~i~g~~~~-~~g~~~ 435 (1230)
++.+.+.+...+.. ..-+..+||+||+|+||+++|.++|+.+...-- -..+.... ...-..|-.- ++...|
T Consensus 9 ~~~~~~~l~~~~~~-----~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~-~~~~~c~~c~~~~~g~HPD~~~i~~~p 82 (319)
T PRK08769 9 QQRAYDQTVAALDA-----GRLGHGLLICGPEGLGKRAVALALAEHVLASGP-DPAAAQRTRQLIAAGTHPDLQLVSFIP 82 (319)
T ss_pred HHHHHHHHHHHHHc-----CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC-CCCCcchHHHHHhcCCCCCEEEEecCC
Confidence 56667776666532 233456999999999999999999998864210 00000000 0000111111 111001
Q ss_pred -------------hhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCc
Q psy8969 436 -------------GKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSR 497 (1230)
Q Consensus 436 -------------g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~ 497 (1230)
..|++...... ....|++||++|+++. ..+++||+.|+.- -.+
T Consensus 83 ~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEP---------------p~~ 143 (319)
T PRK08769 83 NRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR----AACNALLKTLEEP---------------SPG 143 (319)
T ss_pred CcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH----HHHHHHHHHhhCC---------------CCC
Confidence 12222222111 1235999999999853 4678999998742 257
Q ss_pred eEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHH
Q psy8969 498 VLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 498 v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~ 536 (1230)
++||++|+.++.|.|.++|||.++.+..++.++....+.
T Consensus 144 ~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 144 RYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLL 182 (319)
T ss_pred CeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHH
Confidence 899999999999999999999999999999888765554
No 218
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.76 E-value=5.9e-08 Score=112.43 Aligned_cols=168 Identities=23% Similarity=0.276 Sum_probs=101.3
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEec---------CCcchhHHHh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV---------GGMSDVAEIK 424 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~---------~~~~d~~~i~ 424 (1230)
.-+.|++..|..++-- ++ +++=.++|+-|+.|+|||+++|+||..|.---+.... ..+.+....+
T Consensus 17 ~aivGqd~lk~aL~l~-av-----~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k 90 (423)
T COG1239 17 TAIVGQDPLKLALGLN-AV-----DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAK 90 (423)
T ss_pred hhhcCchHHHHHHhhh-hc-----ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhh
Confidence 5688999999987644 22 1222458889999999999999999998521110000 0000000000
Q ss_pred ----------------------hcccccccc--------------CchhHHHHHHhhcCCCCEEEEecccccCCCCCCCh
Q psy8969 425 ----------------------GHRRTYVGA--------------MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDP 468 (1230)
Q Consensus 425 ----------------------g~~~~~~g~--------------~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~ 468 (1230)
......+|+ .||.+ ++.+..|+++|||--+. ...
T Consensus 91 ~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlL------a~AnRGIlYvDEvnlL~----d~l 160 (423)
T COG1239 91 GDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLL------ARANRGILYVDEVNLLD----DHL 160 (423)
T ss_pred ccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcch------hhccCCEEEEecccccc----HHH
Confidence 000012222 24443 55677899999998662 235
Q ss_pred hhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-CCCCHhhhcccce-eecCCCC-HHHHHHHHHHhh
Q psy8969 469 ASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-DTIPEPLRDRMEM-IDVSGYV-AEEKVAIAAQYL 539 (1230)
Q Consensus 469 ~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-~~I~~~L~~R~~~-i~~~~~~-~~e~~~i~~~~l 539 (1230)
..+||.++....|.--.+.| .+..+ .++++|+|+|+- ..|-++|+|||-. |.+.+.+ .++.+.|+.+.+
T Consensus 161 vd~LLd~aaeG~n~vereGi-si~hp-a~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 161 VDALLDVAAEGVNDVEREGI-SIRHP-ARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred HHHHHHHHHhCCceeeeCce-eeccC-ccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 67888887654333222221 11122 479999999986 4899999999864 6655554 466677776654
No 219
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.76 E-value=9.3e-08 Score=104.56 Aligned_cols=184 Identities=20% Similarity=0.319 Sum_probs=115.7
Q ss_pred hhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC---CeEEEecCCcchhHHHhhc
Q psy8969 350 KILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR---EYFRFSVGGMSDVAEIKGH 426 (1230)
Q Consensus 350 ~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~---~~~~~~~~~~~d~~~i~g~ 426 (1230)
.+--++.+|++.-|+.|.+... .-+.| .+.-.+||+|+.||||||++|++...... ..+.+.-.++.+..+|
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~-~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l--- 97 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTE-QFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPEL--- 97 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHH-HHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHH---
Confidence 3445789999999999988763 22334 34566889999999999999999998754 3444444344433222
Q ss_pred cccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCC
Q psy8969 427 RRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANV 506 (1230)
Q Consensus 427 ~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~ 506 (1230)
+..++. ....=|||+|.+. -........+|-.+||.. +.---+||++.+|+|+
T Consensus 98 ------------~~~l~~-~~~kFIlf~DDLs---Fe~~d~~yk~LKs~LeGg-----------le~~P~NvliyATSNR 150 (249)
T PF05673_consen 98 ------------LDLLRD-RPYKFILFCDDLS---FEEGDTEYKALKSVLEGG-----------LEARPDNVLIYATSNR 150 (249)
T ss_pred ------------HHHHhc-CCCCEEEEecCCC---CCCCcHHHHHHHHHhcCc-----------cccCCCcEEEEEecch
Confidence 222221 1122388899643 222223345566666642 1223479999999999
Q ss_pred CCCCCHhhhcccc---eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhH
Q psy8969 507 IDTIPEPLRDRME---MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 507 ~~~I~~~L~~R~~---~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gv 574 (1230)
-+-|++-..+|-. -=.....+.+||+.++.| .||......++.+.--.|++.|+...|+
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDR---------FGL~l~F~~~~q~~YL~IV~~~~~~~g~ 212 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDR---------FGLWLSFYPPDQEEYLAIVRHYAERYGL 212 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHh---------CCcEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 9999888888765 112234567777777655 4554444456666666777777755554
No 220
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2e-07 Score=116.33 Aligned_cols=231 Identities=20% Similarity=0.283 Sum_probs=146.6
Q ss_pred HHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccH-HHHhhhhcccccChHHHHHHHH
Q psy8969 289 RIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDL-TQAAKILDDDHYGMEDVKKRIL 367 (1230)
Q Consensus 289 ~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~-~~~~~~l~~d~~G~~~vK~~i~ 367 (1230)
.+....+.....+.+.+++..-....+..+|.+- ..|+ .-..|+ ..|+.---+-++|=++-.+|++
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~L~-----------~y~~dlt~~Ar~gklDPvIGRd~EI~r~i 183 (786)
T COG0542 117 ILKKLGVTRKDVEELIEELRGGNEVDSKNAEEDQ--DALE-----------KYTRDLTELAREGKLDPVIGRDEEIRRTI 183 (786)
T ss_pred HHHhccCCHHHHHHHHHHHhcccccCCcccccch--hhHH-----------HHhhhhHHHHhcCCCCCCcChHHHHHHHH
Confidence 3556666666556666666665555555444432 1121 112333 3455556667999999999999
Q ss_pred HHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC----------CCeEEEecCCcchhHHHhhccccccccCchh
Q psy8969 368 EFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN----------REYFRFSVGGMSDVAEIKGHRRTYVGAMPGK 437 (1230)
Q Consensus 368 e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~----------~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~ 437 (1230)
+.|..+..++ -+|+|+||||||.++..+|...- ...+.+++|.+..- .+|-|.-+.+
T Consensus 184 qIL~RR~KNN------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAG-------akyRGeFEeR 250 (786)
T COG0542 184 QILSRRTKNN------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAG-------AKYRGEFEER 250 (786)
T ss_pred HHHhccCCCC------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcc-------ccccCcHHHH
Confidence 9986555444 24899999999999999998753 34455555444331 2467777777
Q ss_pred HHHHHHhhcCC-CCEEEEecccccCCC-C-CCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCC-----CCC
Q psy8969 438 VIQCMKKTKTE-NPLVLIDEVDKIGKG-Y-SGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANV-----IDT 509 (1230)
Q Consensus 438 i~~~~~~~~~~-~pvillDEIDk~~~~-~-~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~-----~~~ 509 (1230)
+...++..... +.|+|||||+.+-.. . .|+ +--.-.+|-|.-. ...+-+|.+|.. +-.
T Consensus 251 lk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~-a~DAaNiLKPaLA-------------RGeL~~IGATT~~EYRk~iE 316 (786)
T COG0542 251 LKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG-AMDAANLLKPALA-------------RGELRCIGATTLDEYRKYIE 316 (786)
T ss_pred HHHHHHHHhcCCCeEEEEechhhhcCCCccccc-ccchhhhhHHHHh-------------cCCeEEEEeccHHHHHHHhh
Confidence 77777766554 457779999998432 1 122 1111233334211 134456654442 336
Q ss_pred CCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHH
Q psy8969 510 IPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLI 565 (1230)
Q Consensus 510 I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li 565 (1230)
-|+||-+||..|.+..|+.++.+.|++- |-++-..-| .+.++|+++.+.+
T Consensus 317 KD~AL~RRFQ~V~V~EPs~e~ti~ILrG-lk~~yE~hH-----~V~i~D~Al~aAv 366 (786)
T COG0542 317 KDAALERRFQKVLVDEPSVEDTIAILRG-LKERYEAHH-----GVRITDEALVAAV 366 (786)
T ss_pred hchHHHhcCceeeCCCCCHHHHHHHHHH-HHHHHHHcc-----CceecHHHHHHHH
Confidence 7999999999999999999999998855 444444444 4678888887665
No 221
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=6e-08 Score=112.91 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=89.3
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCC--eEEEecCCcchhHHH--hhcccc-cc---cc----CchhHHHHHHhh-
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNRE--YFRFSVGGMSDVAEI--KGHRRT-YV---GA----MPGKVIQCMKKT- 445 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~--~~~~~~~~~~d~~~i--~g~~~~-~~---g~----~~g~i~~~~~~~- 445 (1230)
.-+..+||.||+|+||+++|+++|+.+--. --.-.+|...+-..+ ..|-.- ++ +. .-..|++.....
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 345679999999999999999999998531 000012111111111 001110 11 00 001233322221
Q ss_pred ----cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhccccee
Q psy8969 446 ----KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMI 521 (1230)
Q Consensus 446 ----~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i 521 (1230)
.....|+|||++|++.. ..+++||+.|+.- -.+++||++|+.++.|.|.++|||..+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEP---------------p~~t~fiL~t~~~~~lLpTIrSRCq~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTD----AAANALLKTLEEP---------------PENTWFFLACREPARLLATLRSRCRLH 162 (334)
T ss_pred hccccCCceEEEEcchHhhCH----HHHHHHHHHhcCC---------------CCCeEEEEEECChhhChHHHHhccccc
Confidence 12345999999999853 4688999999752 257899999999999999999999999
Q ss_pred ecCCCCHHHHHHHH
Q psy8969 522 DVSGYVAEEKVAIA 535 (1230)
Q Consensus 522 ~~~~~~~~e~~~i~ 535 (1230)
.+..++.++....+
T Consensus 163 ~~~~~~~~~~~~~L 176 (334)
T PRK07993 163 YLAPPPEQYALTWL 176 (334)
T ss_pred cCCCCCHHHHHHHH
Confidence 99998888776554
No 222
>PHA02768 hypothetical protein; Provisional
Probab=98.75 E-value=2.2e-09 Score=89.44 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=34.6
Q ss_pred CccCCCCCCCCCCchhhhccccccCCCCcccCCcccccccccCchhhh
Q psy8969 1136 NNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRK 1183 (1230)
Q Consensus 1136 py~C~~CgK~F~s~s~Lk~H~R~HTGEKPykCpve~CgKsF~~ks~Lk 1183 (1230)
.|.|++|||.|...++|..|||+|+ +||+|. .|+|.|.+++.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~--~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLS--NCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCC--cccceecccceeE
Confidence 3678888888888888888888888 788884 5888888777764
No 223
>KOG0478|consensus
Probab=98.73 E-value=5e-08 Score=117.02 Aligned_cols=159 Identities=26% Similarity=0.357 Sum_probs=94.4
Q ss_pred hcccccChHHHHHHHHHHHHHhhhc-----CCCCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhh
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLK-----GTTQG-KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKG 425 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~-----~~~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g 425 (1230)
+-..+||+|+||+-|+=.|--.... +.-++ -.|||+|-||||||-|-+.+++.+-+-.+ .|.-|.+...--
T Consensus 427 iAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSavGLT-- 503 (804)
T KOG0478|consen 427 IAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSAVGLT-- 503 (804)
T ss_pred hchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccchhcce--
Confidence 5567999999999987555221111 11222 35999999999999999999999876543 232222211100
Q ss_pred cccccccc---CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEE
Q psy8969 426 HRRTYVGA---MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502 (1230)
Q Consensus 426 ~~~~~~g~---~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~ 502 (1230)
.||-- .-..|.+.=......+.|--|||+||++. ..-+.|+|+++...-. .-..-+=..++ .+.-+|+
T Consensus 504 ---ayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~d----StrSvLhEvMEQQTvS-IAKAGII~sLN-AR~SVLA 574 (804)
T KOG0478|consen 504 ---AYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSD----STRSVLHEVMEQQTLS-IAKAGIIASLN-ARCSVLA 574 (804)
T ss_pred ---eeEEecCccceeeeecCcEEEcCCceEEchhhhhhhH----HHHHHHHHHHHHhhhh-Hhhcceeeecc-ccceeee
Confidence 11111 00111111112334577889999999953 2458899999753211 10000000122 3667899
Q ss_pred ecCCCC-------------CCCHhhhcccceee
Q psy8969 503 TANVID-------------TIPEPLRDRMEMID 522 (1230)
Q Consensus 503 TaN~~~-------------~I~~~L~~R~~~i~ 522 (1230)
+||+.. .|||+|++||++|-
T Consensus 575 aANP~~skynp~k~i~eNI~LpptLLSRFDLIy 607 (804)
T KOG0478|consen 575 AANPIRSKYNPNKSIIENINLPPTLLSRFDLIF 607 (804)
T ss_pred eeccccccCCCCCchhhccCCChhhhhhhcEEE
Confidence 999654 68999999999763
No 224
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=1e-07 Score=113.14 Aligned_cols=188 Identities=21% Similarity=0.338 Sum_probs=125.3
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcch---hHHHhhcccc-ccccC----chhHHHHHHhhcCC
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSD---VAEIKGHRRT-YVGAM----PGKVIQCMKKTKTE 448 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d---~~~i~g~~~~-~~g~~----~g~i~~~~~~~~~~ 448 (1230)
....+|+.|.+||||-.+|++|-+... .||+.++++-+.+ ++++-|+-+. |.||. ||.+ ...+
T Consensus 267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK~Glf------E~A~ 340 (560)
T COG3829 267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGKPGLF------ELAN 340 (560)
T ss_pred CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCCCcce------eecc
Confidence 345688999999999999999988765 5999999998876 5777775443 44554 3433 2234
Q ss_pred CCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-------CCCCHhhhccccee
Q psy8969 449 NPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------DTIPEPLRDRMEMI 521 (1230)
Q Consensus 449 ~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------~~I~~~L~~R~~~i 521 (1230)
..-||||||-.+.. .-.+-||.+|.. ..|..- -+...-..+|-+|++||.. .+.=..|.=|+.|+
T Consensus 341 gGTLFLDEIgempl----~LQaKLLRVLQE---kei~rv-G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~ 412 (560)
T COG3829 341 GGTLFLDEIGEMPL----PLQAKLLRVLQE---KEIERV-GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVI 412 (560)
T ss_pred CCeEEehhhccCCH----HHHHHHHHHHhh---ceEEec-CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeecee
Confidence 56899999998743 235678888754 333221 1111112357899999953 23444555588876
Q ss_pred ecCCCCHHHH---HHHHHHhhcchhHHhcCCCCCCc-ccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 522 DVSGYVAEEK---VAIAAQYLIPQAMKESGLSPEQI-TLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 522 ~~~~~~~~e~---~~i~~~~l~~~~~~~~gl~~~~i-~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
.+.=++..|. +.++..|++.+.-...+- .+ .++++++..+. .|..-++||.|+..|+.++
T Consensus 413 ~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~---~v~~ls~~a~~~L~-~y~WPGNVRELeNviER~v 476 (560)
T COG3829 413 PITIPPLRERKEDIPLLAEYFLDKFSRRYGR---NVKGLSPDALALLL-RYDWPGNVRELENVIERAV 476 (560)
T ss_pred eecCCCcccCcchHHHHHHHHHHHHHHHcCC---CcccCCHHHHHHHH-hCCCCchHHHHHHHHHHHH
Confidence 5544443222 445566666665555432 34 38899888765 6777889999999999865
No 225
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.73 E-value=8.2e-08 Score=112.49 Aligned_cols=213 Identities=18% Similarity=0.299 Sum_probs=144.0
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcch---hHHHhhcc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSD---VAEIKGHR 427 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d---~~~i~g~~ 427 (1230)
..++|.-.+-..+++-+.+--.+ ...+||.|..||||-.+||+|-.... .||+.++++-+.. ++|+-||.
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~S----d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe 298 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKS----DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE 298 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcC----CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc
Confidence 46888888888777776543222 24689999999999999999988765 6999999887764 68899987
Q ss_pred ccc-ccc---CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 428 RTY-VGA---MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 428 ~~~-~g~---~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
+.. .|+ .+|+. .-..+.-+|||||..+.- .....||.+|.. ..|-.---+.++. -.|-+|++
T Consensus 299 KGAFTGA~~~r~GrF------ElAdGGTLFLDEIGelPL----~lQaKLLRvLQe---gEieRvG~~r~ik-VDVRiIAA 364 (550)
T COG3604 299 KGAFTGAINTRRGRF------ELADGGTLFLDEIGELPL----ALQAKLLRVLQE---GEIERVGGDRTIK-VDVRVIAA 364 (550)
T ss_pred ccccccchhccCcce------eecCCCeEechhhccCCH----HHHHHHHHHHhh---cceeecCCCceeE-EEEEEEec
Confidence 742 233 23332 122456899999988743 235678888743 3322111111111 14789999
Q ss_pred cCCC-------CCCCHhhhcccceeecCCCCHHHH---HHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhh
Q psy8969 504 ANVI-------DTIPEPLRDRMEMIDVSGYVAEEK---VAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESG 573 (1230)
Q Consensus 504 aN~~-------~~I~~~L~~R~~~i~~~~~~~~e~---~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~g 573 (1230)
||+- ...-..|.=|+.|+.+.-++..|. +-++..|.+.+..++.|. ..+.++.++++.+. +|..-++
T Consensus 365 TNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr--~~l~ls~~Al~~L~-~y~wPGN 441 (550)
T COG3604 365 TNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGR--AILSLSAEALELLS-SYEWPGN 441 (550)
T ss_pred cchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCC--cccccCHHHHHHHH-cCCCCCc
Confidence 9942 233344455788776555554333 556677788888888876 46788999998886 6677889
Q ss_pred HHHHHHHHHHHHHH
Q psy8969 574 VRNLQKHIEKVTRK 587 (1230)
Q Consensus 574 vR~l~~~i~~i~r~ 587 (1230)
||.|+..|+...-+
T Consensus 442 VRELen~veRavll 455 (550)
T COG3604 442 VRELENVVERAVLL 455 (550)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988875543
No 226
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.72 E-value=1.4e-08 Score=122.72 Aligned_cols=107 Identities=18% Similarity=0.428 Sum_probs=87.9
Q ss_pred CCCCCCCCCCCCCCCCccChhHHHhhhhcccCCCceecCCCccCccccChhhHHHHHhhccCCCCccccccccccccC--
Q psy8969 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFT-- 864 (1230)
Q Consensus 787 t~ekp~~C~~~~C~k~F~~~~~L~~H~r~H~gekpy~C~~~~Cgk~F~~~s~L~~H~r~Htgekpy~C~~~~C~k~F~-- 864 (1230)
..++.+.|+. |++.|. ...|..|+++|+ ++|.|+ ||+.| .+..|..|+++|.+++|+.|.+ |++.|.
T Consensus 449 el~~H~~C~~--Cgk~f~-~s~LekH~~~~H--kpv~Cp---Cg~~~-~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g 517 (567)
T PLN03086 449 EAKNHVHCEK--CGQAFQ-QGEMEKHMKVFH--EPLQCP---CGVVL-EKEQMVQHQASTCPLRLITCRF--CGDMVQAG 517 (567)
T ss_pred ccccCccCCC--CCCccc-hHHHHHHHHhcC--CCccCC---CCCCc-chhHHHhhhhccCCCCceeCCC--CCCccccC
Confidence 3456688987 999996 677999999985 889995 88755 6789999999999999999986 999984
Q ss_pred --------CchhHhhhhccccCCCCccCCCCCcccCChhhHHhHHhhhcC
Q psy8969 865 --------EYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHR 906 (1230)
Q Consensus 865 --------~~~~L~~H~~~H~~ekpy~C~~Cgk~F~~~~~L~~H~k~hh~ 906 (1230)
..+.|..|+..+ |.+++.|..||+.|+.+ .+..|+-..|.
T Consensus 518 ~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~ 565 (567)
T PLN03086 518 GSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVHQ 565 (567)
T ss_pred ccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence 245899999886 89999999999998876 57788776654
No 227
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.71 E-value=7.1e-08 Score=121.92 Aligned_cols=155 Identities=21% Similarity=0.393 Sum_probs=107.7
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHH-HHHhhcCCCCEEEEeccc
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQ-CMKKTKTENPLVLIDEVD 458 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~-~~~~~~~~~pvillDEID 458 (1230)
-++++||-|.||||||||..++|+.+|..++||+++.-+|..++-|..-..-.+..-++.. -|..|-....-||||||.
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiN 1621 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEIN 1621 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhh
Confidence 4677999999999999999999999999999999999999888766433211001111111 122333456689999997
Q ss_pred ccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC-CceEEEEecCCCC------CCCHhhhcccceeecCCCCHHHH
Q psy8969 459 KIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL-SRVLFICTANVID------TIPEPLRDRMEMIDVSGYVAEEK 531 (1230)
Q Consensus 459 k~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~-s~v~~I~TaN~~~------~I~~~L~~R~~~i~~~~~~~~e~ 531 (1230)
-.+. .....|-..||. .+..|+.. ++..+|. .+..+.+|-|+-+ .+|..+++||-+|.+.+|+..+.
T Consensus 1622 LaSQ----SVlEGLNacLDh-R~eayIPE-ld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi 1695 (4600)
T COG5271 1622 LASQ----SVLEGLNACLDH-RREAYIPE-LDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDI 1695 (4600)
T ss_pred hhHH----HHHHHHHHHHhh-cccccccc-ccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchH
Confidence 5422 223344445664 33344433 2334443 3667778888765 79999999999999999999999
Q ss_pred HHHHHHhhcc
Q psy8969 532 VAIAAQYLIP 541 (1230)
Q Consensus 532 ~~i~~~~l~~ 541 (1230)
..||.. +.|
T Consensus 1696 ~~Ia~~-~yp 1704 (4600)
T COG5271 1696 THIANK-MYP 1704 (4600)
T ss_pred HHHHHh-hCC
Confidence 998865 445
No 228
>KOG0735|consensus
Probab=98.69 E-value=1.4e-07 Score=113.44 Aligned_cols=229 Identities=14% Similarity=0.212 Sum_probs=136.1
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE----EEecCCcchhHHHhhcccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF----RFSVGGMSDVAEIKGHRRT 429 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~----~~~~~~~~d~~~i~g~~~~ 429 (1230)
.|.+-+..+|+...++. +....+...|+|.||+|+|||.||++|++.+..+.+ +++++ .++|.+
T Consensus 408 ~d~i~~~s~kke~~n~~----~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs------~l~~~~-- 475 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQE----LSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS------TLDGSS-- 475 (952)
T ss_pred Cceeecchhhhhhhhhh----cccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEech------hccchh--
Confidence 45555666777655532 334566678999999999999999999999876542 23332 222221
Q ss_pred ccccCchhHHHHHHhhcCCCC-EEEEecccccCCC--CCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCC
Q psy8969 430 YVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGKG--YSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANV 506 (1230)
Q Consensus 430 ~~g~~~g~i~~~~~~~~~~~p-villDEIDk~~~~--~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~ 506 (1230)
+...-.-+...|..+--..| ||+||.+|-+... ..+.+.+.-.++|...-| ..++.|. -+.+.+.||+|.+.
T Consensus 476 -~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~fln-qvi~~y~---~~~~~ia~Iat~qe 550 (952)
T KOG0735|consen 476 -LEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLN-QVIKIYL---KRNRKIAVIATGQE 550 (952)
T ss_pred -HHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHH-HHHHHHH---ccCcEEEEEEechh
Confidence 11111233444555555555 8899999998652 222233322232221110 1122222 34466899999999
Q ss_pred CCCCCHhhhc--ccc-eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8969 507 IDTIPEPLRD--RME-MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEK 583 (1230)
Q Consensus 507 ~~~I~~~L~~--R~~-~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~ 583 (1230)
..+|++-|.+ +|. ++.++.+...++.+|+...+ .+.+ +....+.+.. +..-|-+.-++.|.-.+++
T Consensus 551 ~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~-s~~~---------~~~~~~dLd~-ls~~TEGy~~~DL~ifVeR 619 (952)
T KOG0735|consen 551 LQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIF-SKNL---------SDITMDDLDF-LSVKTEGYLATDLVIFVER 619 (952)
T ss_pred hhhcChhhcCccceEEEEecCCcchhHHHHHHHHHH-Hhhh---------hhhhhHHHHH-HHHhcCCccchhHHHHHHH
Confidence 9999988876 566 57888888888777765543 3322 1122233333 5556677777888888887
Q ss_pred HHHHHHHHHhhcCCCceEechhhhhhhcC
Q psy8969 584 VTRKVALTIVKKESDKVTVTNDNLSDFVG 612 (1230)
Q Consensus 584 i~r~~~~~~~~~~~~~~~i~~~~~~~~~~ 612 (1230)
++-.+.++..... .+ .+|.+++++.|.
T Consensus 620 ai~~a~leris~~-~k-lltke~f~ksL~ 646 (952)
T KOG0735|consen 620 AIHEAFLERISNG-PK-LLTKELFEKSLK 646 (952)
T ss_pred HHHHHHHHHhccC-cc-cchHHHHHHHHH
Confidence 7765543333222 23 688888776653
No 229
>PHA00733 hypothetical protein
Probab=98.69 E-value=1.2e-08 Score=102.12 Aligned_cols=83 Identities=18% Similarity=0.320 Sum_probs=53.9
Q ss_pred CCCceecCCCccCccccChhhHHHH--H---hhccCCCCccccccccccccCCchhHhhhhccccCCCCccCCCCCcccC
Q psy8969 818 GEKPYVCGEAGCDKSFASATNYKNH--M---RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYR 892 (1230)
Q Consensus 818 gekpy~C~~~~Cgk~F~~~s~L~~H--~---r~Htgekpy~C~~~~C~k~F~~~~~L~~H~~~H~~ekpy~C~~Cgk~F~ 892 (1230)
..+++.|.. |.+.|.....|..| . ..+++.+||.|.. |++.|.+...|..|++.| ..+|.|+.|++.|.
T Consensus 37 ~~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~--Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~ 110 (128)
T PHA00733 37 EQKRLIRAV--VKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPL--CLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFR 110 (128)
T ss_pred hhhhHHHHH--HhhhccChhhhcchHHHHhhcccCCCCCccCCC--CCCcCCCHHHHHHHHhcC--CcCccCCCCCCccC
Confidence 345566666 66666655555444 1 1233466777764 777777777777777765 34677777777777
Q ss_pred ChhhHHhHHhhhcC
Q psy8969 893 QLCTLNVHKKTNHR 906 (1230)
Q Consensus 893 ~~~~L~~H~k~hh~ 906 (1230)
....|..|+...|+
T Consensus 111 ~~~sL~~H~~~~h~ 124 (128)
T PHA00733 111 NTDSTLDHVCKKHN 124 (128)
T ss_pred CHHHHHHHHHHhcC
Confidence 77777777777664
No 230
>KOG2170|consensus
Probab=98.69 E-value=5.6e-08 Score=107.34 Aligned_cols=156 Identities=27% Similarity=0.409 Sum_probs=106.3
Q ss_pred cccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCC-CCCceEEEeCCCCCCchHHHHHHHHHhCC-----CeEEEecC
Q psy8969 342 NLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGT-TQGKILCFYGPPGVGKTSIAKSIARALNR-----EYFRFSVG 415 (1230)
Q Consensus 342 ~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~-~~~~~llL~GPPG~GKTslak~iA~~l~~-----~~~~~~~~ 415 (1230)
..|+...++.|++.++||--+++.|...+-..+-++. .+|-.|=|+|+|||||.-.++.||+.+-+ +|+..-++
T Consensus 70 ~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fva 149 (344)
T KOG2170|consen 70 RNDLDGLEKDLARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVA 149 (344)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhh
Confidence 4578889999999999999999999998866665544 44555669999999999999999999753 22221111
Q ss_pred --CcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcc-
Q psy8969 416 --GMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVP- 492 (1230)
Q Consensus 416 --~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~- 492 (1230)
.......|.. |--..-..|+... ..+.++++++||+||+.+ .|+++|-| |+|.|-.+.
T Consensus 150 t~hFP~~~~ie~----Yk~eL~~~v~~~v--~~C~rslFIFDE~DKmp~--------gLld~lkp-----fLdyyp~v~g 210 (344)
T KOG2170|consen 150 TLHFPHASKIED----YKEELKNRVRGTV--QACQRSLFIFDEVDKLPP--------GLLDVLKP-----FLDYYPQVSG 210 (344)
T ss_pred hccCCChHHHHH----HHHHHHHHHHHHH--HhcCCceEEechhhhcCH--------hHHHHHhh-----hhcccccccc
Confidence 1112222211 2112222333333 356788999999999843 56776655 788777666
Q ss_pred ccCCceEEEEecCCCC-CCCHhhhc
Q psy8969 493 VDLSRVLFICTANVID-TIPEPLRD 516 (1230)
Q Consensus 493 ~d~s~v~~I~TaN~~~-~I~~~L~~ 516 (1230)
+|..+.+||.-+|.-. .|..-.++
T Consensus 211 v~frkaIFIfLSN~gg~eI~~~aL~ 235 (344)
T KOG2170|consen 211 VDFRKAIFIFLSNAGGSEIARIALE 235 (344)
T ss_pred ccccceEEEEEcCCcchHHHHHHHH
Confidence 8999999999999765 44333333
No 231
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.2e-08 Score=117.28 Aligned_cols=151 Identities=25% Similarity=0.395 Sum_probs=87.2
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC----CCeEEEe----cCC-cc------
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN----REYFRFS----VGG-MS------ 418 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~----~~~~~~~----~~~-~~------ 418 (1230)
.|+.||+.+|+.+....+ -|..|+|+||||||||+||+-+...|= .+++.++ +.| ..
T Consensus 179 ~DV~GQ~~AKrAleiAAA--------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~ 250 (490)
T COG0606 179 KDVKGQEQAKRALEIAAA--------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLK 250 (490)
T ss_pred hhhcCcHHHHHHHHHHHh--------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccc
Confidence 589999999998866553 467899999999999999998776653 0000000 111 00
Q ss_pred ------------hhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhh
Q psy8969 419 ------------DVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLD 486 (1230)
Q Consensus 419 ------------d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d 486 (1230)
+...+.| .+--..||.| +...|.|+||||.-.+.+ +..++|.+=|+...-. ...
T Consensus 251 ~~rPFr~PHHsaS~~aLvG---GG~~p~PGeI------sLAH~GVLFLDElpef~~----~iLe~LR~PLE~g~i~-IsR 316 (490)
T COG0606 251 IHRPFRAPHHSASLAALVG---GGGVPRPGEI------SLAHNGVLFLDELPEFKR----SILEALREPLENGKII-ISR 316 (490)
T ss_pred eeCCccCCCccchHHHHhC---CCCCCCCCce------eeecCCEEEeeccchhhH----HHHHHHhCccccCcEE-EEE
Confidence 1111111 1111245665 456789999999876522 3334444333321100 000
Q ss_pred hccCccccCCceEEEEecC-----------------------CCCCCCHhhhcccce-eecCCCC
Q psy8969 487 HYLDVPVDLSRVLFICTAN-----------------------VIDTIPEPLRDRMEM-IDVSGYV 527 (1230)
Q Consensus 487 ~~~~~~~d~s~v~~I~TaN-----------------------~~~~I~~~L~~R~~~-i~~~~~~ 527 (1230)
.-..+.+. .++.+|+++| +.+.|..||+||++. ++++..+
T Consensus 317 a~~~v~yp-a~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~ 380 (490)
T COG0606 317 AGSKVTYP-ARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLS 380 (490)
T ss_pred cCCeeEEe-eeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCC
Confidence 00112222 3567778888 445789999999995 5666654
No 232
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.66 E-value=3.3e-08 Score=119.89 Aligned_cols=150 Identities=23% Similarity=0.360 Sum_probs=91.4
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE--EEe------cCCcchh-HHHh
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF--RFS------VGGMSDV-AEIK 424 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~--~~~------~~~~~d~-~~i~ 424 (1230)
.+++|+..+++.+.-.+ ..+..++|+||||+|||+|++.|+..+-..-. .+. +.|..+. ..+
T Consensus 191 ~~v~Gq~~~~~al~laa--------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~- 261 (506)
T PRK09862 191 SDVIGQEQGKRGLEITA--------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQW- 261 (506)
T ss_pred EEEECcHHHHhhhheec--------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCc-
Confidence 36889988887653221 35688999999999999999999987642111 111 1121110 001
Q ss_pred hcccc------------cccc----CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhh-
Q psy8969 425 GHRRT------------YVGA----MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDH- 487 (1230)
Q Consensus 425 g~~~~------------~~g~----~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~- 487 (1230)
..|- .+|. .||.+ +...+.++|||||+.+. ....++|++.|+..+.. +..
T Consensus 262 -~~rPfr~ph~~~s~~~l~GGg~~~~pG~l------~~A~gGvLfLDEi~e~~----~~~~~~L~~~LE~g~v~--I~r~ 328 (506)
T PRK09862 262 -RQRPFRSPHHSASLTAMVGGGAIPGPGEI------SLAHNGVLFLDELPEFE----RRTLDALREPIESGQIH--LSRT 328 (506)
T ss_pred -CCCCccCCCccchHHHHhCCCceehhhHh------hhccCCEEecCCchhCC----HHHHHHHHHHHHcCcEE--EecC
Confidence 0011 2232 23433 45567899999999863 34567888887653311 011
Q ss_pred ccCccccCCceEEEEecCCCC---------------------CCCHhhhcccce-eecCCC
Q psy8969 488 YLDVPVDLSRVLFICTANVID---------------------TIPEPLRDRMEM-IDVSGY 526 (1230)
Q Consensus 488 ~~~~~~d~s~v~~I~TaN~~~---------------------~I~~~L~~R~~~-i~~~~~ 526 (1230)
-....+ -.++.+|+|+|+.. .|+.||+|||++ +.+...
T Consensus 329 g~~~~~-pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~ 388 (506)
T PRK09862 329 RAKITY-PARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLP 388 (506)
T ss_pred Ccceec-cCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCC
Confidence 011111 24789999999753 589999999997 566544
No 233
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.66 E-value=5.8e-08 Score=120.07 Aligned_cols=155 Identities=26% Similarity=0.362 Sum_probs=93.5
Q ss_pred hhcccccChHHHHHHHHHHHHHhhhcCC-----CCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEec-----CCcch
Q psy8969 351 ILDDDHYGMEDVKKRILEFIAVSQLKGT-----TQG-KILCFYGPPGVGKTSIAKSIARALNREYFRFSV-----GGMSD 419 (1230)
Q Consensus 351 ~l~~d~~G~~~vK~~i~e~l~~~~~~~~-----~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~-----~~~~d 419 (1230)
.+=..+||+++||+.|+=.|--...+.. .+| -.+||+|-||||||.|-+.+++.+-+..+. +. .|++.
T Consensus 283 SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkgss~~GLTA 361 (682)
T COG1241 283 SIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKGSSAAGLTA 361 (682)
T ss_pred HhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccccccccCcee
Confidence 3456799999999988654421111111 122 349999999999999999999988765432 22 12221
Q ss_pred hHHHhhcccccccc---CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC-
Q psy8969 420 VAEIKGHRRTYVGA---MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL- 495 (1230)
Q Consensus 420 ~~~i~g~~~~~~g~---~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~- 495 (1230)
...+....|. ..|. .....+.|..|||+|||.. .-.+||+|.++...-.-.- -++..-|
T Consensus 362 ----av~rd~~tge~~LeaGA------LVlAD~Gv~cIDEfdKm~~----~dr~aihEaMEQQtIsIaK---AGI~atLn 424 (682)
T COG1241 362 ----AVVRDKVTGEWVLEAGA------LVLADGGVCCIDEFDKMNE----EDRVAIHEAMEQQTISIAK---AGITATLN 424 (682)
T ss_pred ----EEEEccCCCeEEEeCCE------EEEecCCEEEEEeccCCCh----HHHHHHHHHHHhcEeeecc---cceeeecc
Confidence 0011111111 1121 1334577999999999853 3467899988652211100 0111112
Q ss_pred CceEEEEecCCCC-------------CCCHhhhcccceeec
Q psy8969 496 SRVLFICTANVID-------------TIPEPLRDRMEMIDV 523 (1230)
Q Consensus 496 s~v~~I~TaN~~~-------------~I~~~L~~R~~~i~~ 523 (1230)
.+.-+++++|+.. .+|++|++||++|-+
T Consensus 425 ARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifv 465 (682)
T COG1241 425 ARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFV 465 (682)
T ss_pred hhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEE
Confidence 5677889999765 689999999997633
No 234
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.64 E-value=3.1e-07 Score=112.44 Aligned_cols=210 Identities=20% Similarity=0.325 Sum_probs=131.7
Q ss_pred cccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcch---hHHHhhccc
Q psy8969 355 DHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSD---VAEIKGHRR 428 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d---~~~i~g~~~ 428 (1230)
+.+|-...-+++.+.+.. .. .....+++.|++|||||++|++|..... .||+.++++.+.+ ..++.||..
T Consensus 139 ~lig~s~~~~~l~~~~~~--~~--~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~ 214 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGR--LS--RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEK 214 (469)
T ss_pred cceecCHHHHHHHHHHHH--Hh--ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCC
Confidence 355555554555544421 11 2345689999999999999999999864 6999999988865 244556654
Q ss_pred c-ccccCc---hhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEec
Q psy8969 429 T-YVGAMP---GKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTA 504 (1230)
Q Consensus 429 ~-~~g~~~---g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~Ta 504 (1230)
. |.|+.. |.+ ....+..+||||||.+.. +....|+.+|+..+ |... -+......++-+|+||
T Consensus 215 g~~~~~~~~~~g~~------~~a~~Gtl~l~~i~~l~~----~~q~~L~~~l~~~~---~~~~-~~~~~~~~~~rii~~~ 280 (469)
T PRK10923 215 GAFTGANTIRQGRF------EQADGGTLFLDEIGDMPL----DVQTRLLRVLADGQ---FYRV-GGYAPVKVDVRIIAAT 280 (469)
T ss_pred CCCCCCCcCCCCCe------eECCCCEEEEeccccCCH----HHHHHHHHHHhcCc---EEeC-CCCCeEEeeEEEEEeC
Confidence 2 333321 211 123466899999999843 34567777776432 1110 0000111357888888
Q ss_pred CCC-------CCCCHhhhcccce--eecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhh
Q psy8969 505 NVI-------DTIPEPLRDRMEM--IDVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESG 573 (1230)
Q Consensus 505 N~~-------~~I~~~L~~R~~~--i~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~g 573 (1230)
|.. ..+.+.|+.|+.. |.++++-. +|...++..++ .+...+.|. .-..++++++..|. .|..-++
T Consensus 281 ~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l-~~~~~~~~~--~~~~~~~~a~~~L~-~~~wpgN 356 (469)
T PRK10923 281 HQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFL-QVAARELGV--EAKLLHPETEAALT-RLAWPGN 356 (469)
T ss_pred CCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHH-HHHHHHcCC--CCCCcCHHHHHHHH-hCCCCCh
Confidence 753 3567889999964 55555443 45555655554 444444443 33468899988775 6777889
Q ss_pred HHHHHHHHHHHHH
Q psy8969 574 VRNLQKHIEKVTR 586 (1230)
Q Consensus 574 vR~l~~~i~~i~r 586 (1230)
||.|++.|+.++.
T Consensus 357 v~eL~~~i~~~~~ 369 (469)
T PRK10923 357 VRQLENTCRWLTV 369 (469)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 235
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.63 E-value=1.9e-07 Score=98.32 Aligned_cols=148 Identities=20% Similarity=0.346 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcchh---HHHhhcccc-c
Q psy8969 358 GMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSDV---AEIKGHRRT-Y 430 (1230)
Q Consensus 358 G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d~---~~i~g~~~~-~ 430 (1230)
|-...-+++++.+.... ..+..||++|++||||+.+|++|-+... .||+.++++.+.+. .++-|+... +
T Consensus 3 G~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~ 78 (168)
T PF00158_consen 3 GESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAF 78 (168)
T ss_dssp --SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSS
T ss_pred eCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccc
Confidence 44444455555443221 2235688999999999999999998764 58999999998753 456666543 2
Q ss_pred ccc---CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC
Q psy8969 431 VGA---MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI 507 (1230)
Q Consensus 431 ~g~---~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~ 507 (1230)
.|+ .+|.+ ....+..+||||||.+.. +....|+.+|+.. .|...--..++. .+|-+|+|||..
T Consensus 79 ~~~~~~~~G~l------~~A~~GtL~Ld~I~~L~~----~~Q~~Ll~~l~~~---~~~~~g~~~~~~-~~~RiI~st~~~ 144 (168)
T PF00158_consen 79 TGARSDKKGLL------EQANGGTLFLDEIEDLPP----ELQAKLLRVLEEG---KFTRLGSDKPVP-VDVRIIASTSKD 144 (168)
T ss_dssp TTTSSEBEHHH------HHTTTSEEEEETGGGS-H----HHHHHHHHHHHHS---EEECCTSSSEEE---EEEEEEESS-
T ss_pred cccccccCCce------eeccceEEeecchhhhHH----HHHHHHHHHHhhc---hhcccccccccc-ccceEEeecCcC
Confidence 233 23543 234678999999999843 3566788887642 222111111222 478899988853
Q ss_pred -------CCCCHhhhcccceeec
Q psy8969 508 -------DTIPEPLRDRMEMIDV 523 (1230)
Q Consensus 508 -------~~I~~~L~~R~~~i~~ 523 (1230)
..+.+.|.-|+.++.+
T Consensus 145 l~~~v~~g~fr~dLy~rL~~~~i 167 (168)
T PF00158_consen 145 LEELVEQGRFREDLYYRLNVFTI 167 (168)
T ss_dssp HHHHHHTTSS-HHHHHHHTTEEE
T ss_pred HHHHHHcCCChHHHHHHhceEec
Confidence 3566777777776643
No 236
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.62 E-value=5.2e-07 Score=109.73 Aligned_cols=187 Identities=17% Similarity=0.283 Sum_probs=117.4
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcchh---HHHhhcccc-cccc---CchhHHHHHHhhcCCCCE
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSDV---AEIKGHRRT-YVGA---MPGKVIQCMKKTKTENPL 451 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d~---~~i~g~~~~-~~g~---~~g~i~~~~~~~~~~~pv 451 (1230)
..+++.|++||||+++|++|..... .||+.++++.+.+. +++.|+.+. |.|+ .+|.+ ....+..
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~------~~a~~gt 236 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKI------EYAHGGT 236 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCce------eECCCCE
Confidence 4577999999999999999988764 68999999988652 334554432 2222 12322 1234679
Q ss_pred EEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-------CCCCHhhhcccce--ee
Q psy8969 452 VLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------DTIPEPLRDRMEM--ID 522 (1230)
Q Consensus 452 illDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------~~I~~~L~~R~~~--i~ 522 (1230)
|||||||.+.. +....|+.+|+... +.. .-+....-.++-+|+|||.. ..+.+.|..|+.. |.
T Consensus 237 l~l~~i~~l~~----~~q~~l~~~l~~~~---~~~-~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~ 308 (445)
T TIGR02915 237 LFLDEIGDLPL----NLQAKLLRFLQERV---IER-LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISIT 308 (445)
T ss_pred EEEechhhCCH----HHHHHHHHHHhhCe---EEe-CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceec
Confidence 99999999843 44567777775422 100 00000011257788888754 4566778888875 45
Q ss_pred cCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8969 523 VSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 523 ~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r 586 (1230)
++++-. +|...++. +++.+...+.| .....++++++..+. .|..-+++|.|++.|+.++.
T Consensus 309 lPpLr~R~~Di~~l~~-~~l~~~~~~~~--~~~~~~~~~a~~~L~-~~~wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 309 IPPLRSRDGDAVLLAN-AFLERFARELK--RKTKGFTDDALRALE-AHAWPGNVRELENKVKRAVI 370 (445)
T ss_pred CCCchhchhhHHHHHH-HHHHHHHHHhC--CCCCCCCHHHHHHHH-hCCCCChHHHHHHHHHHHHH
Confidence 555433 34444444 44444444333 234568999998876 55567889999999987653
No 237
>KOG2035|consensus
Probab=98.60 E-value=3.6e-07 Score=99.73 Aligned_cols=187 Identities=25% Similarity=0.345 Sum_probs=114.8
Q ss_pred ccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh-C--CCeEEEecCCcchhH----HHhhcc-
Q psy8969 356 HYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL-N--REYFRFSVGGMSDVA----EIKGHR- 427 (1230)
Q Consensus 356 ~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l-~--~~~~~~~~~~~~d~~----~i~g~~- 427 (1230)
..+.++....+..+.. ...-+.++||||.|.||-|.+.+|-+++ | .+=.++....+...+ |+....
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 4455555555554432 1223679999999999999999999887 3 232333211111100 010000
Q ss_pred -------ccccccCchhHHHHHHh--hcC---------CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhcc
Q psy8969 428 -------RTYVGAMPGKVIQCMKK--TKT---------ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYL 489 (1230)
Q Consensus 428 -------~~~~g~~~g~i~~~~~~--~~~---------~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~ 489 (1230)
..-.|..-.-|+|.+.+ |.+ .-.|++|-|+|++.+ |...||..-++- |
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~----dAQ~aLRRTMEk---------Y- 154 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR----DAQHALRRTMEK---------Y- 154 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH----HHHHHHHHHHHH---------H-
Confidence 11123333444444432 111 124899999999865 455566554432 2
Q ss_pred CccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh
Q psy8969 490 DVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC 569 (1230)
Q Consensus 490 ~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~ 569 (1230)
.+++-+|+.+|....|.+|+++||-.|.+++++++|...++.+.+ ++ +.+.++.+.+..|++.
T Consensus 155 -----s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~-----~k-----E~l~lp~~~l~rIa~k-- 217 (351)
T KOG2035|consen 155 -----SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVL-----KK-----EGLQLPKELLKRIAEK-- 217 (351)
T ss_pred -----hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHH-----HH-----hcccCcHHHHHHHHHH--
Confidence 146677778899999999999999999999999999988776543 33 4566777777777644
Q ss_pred hhhhHHHHHHHHH
Q psy8969 570 RESGVRNLQKHIE 582 (1230)
Q Consensus 570 ~e~gvR~l~~~i~ 582 (1230)
.-|+|||.|-
T Consensus 218 ---S~~nLRrAll 227 (351)
T KOG2035|consen 218 ---SNRNLRRALL 227 (351)
T ss_pred ---hcccHHHHHH
Confidence 2366766553
No 238
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=4.2e-07 Score=102.72 Aligned_cols=103 Identities=24% Similarity=0.394 Sum_probs=88.0
Q ss_pred CcccccccccCCCcceeeeeccccCcCCCCCchhHHHH--HHHHHhhhCCCCCcCceeeeeEEEeeeEeecCCchHHHHH
Q psy8969 661 IFSHDRLFEITPPGVVMGLAWTAMAVKKDGPSAGITIT--TALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIA 738 (1230)
Q Consensus 661 ~~~~~~~~~~~~~g~~~~~~~~~~~~pkdgpsag~~~~--~a~~s~~~~~~v~~~~amtgeitl~g~v~~iGG~kek~~a 738 (1230)
.|...++|.|+-+= ---|||-..+++ .||.|.++.+||....+.-|-+||-|-|-|+-.+---+.-
T Consensus 567 ~~~e~~y~lhv~~l------------~~~g~s~~~sl~a~ialcs~~l~k~~qeq~~vlgsmtlgg~i~~~~~la~~lq~ 634 (683)
T COG4930 567 KFSEHEYHLHVVEL------------HNTGPSTATSLAALIALCSVLLAKPVQEQMVVLGSMTLGGVINPVQDLAASLQL 634 (683)
T ss_pred eeccceeeEEeeee------------ccCCcchhhhHHHHHHHHHHHhhccHHhhhhhheeeecccccchHHHHHHHHHH
Confidence 45556677776432 236898776654 6889999999999999999999999999999999999999
Q ss_pred HHHcCcceeecCccccccccCchhhHhhccceecccc
Q psy8969 739 AKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSE 775 (1230)
Q Consensus 739 a~r~gi~~vi~p~~N~kDl~elPe~vr~~l~i~fvs~ 775 (1230)
|..+|.|+|++|....-|+..+|.+......+.|.+.
T Consensus 635 ~~dsgakkv~lp~ssa~~i~tvp~~lftkfqvsfy~~ 671 (683)
T COG4930 635 AFDSGAKKVLLPMSSAVDIPTVPAELFTKFQVSFYSE 671 (683)
T ss_pred HHhcCCceEEEeccccCCcCCCCHHHhhhheeeeecC
Confidence 9999999999999999999999999988888877554
No 239
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.60 E-value=3.3e-07 Score=107.67 Aligned_cols=176 Identities=16% Similarity=0.250 Sum_probs=108.9
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEeccccc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKI 460 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~ 460 (1230)
...|.||||.|.|||-|+.|++...........+-.+..+... ..++-+.-..-.+.|+..= .-.+++||.|+.+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~----~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l 187 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT----NDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFL 187 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH----HHHHHHHHhhhHHHHHHhh-ccCeeeechHhHh
Confidence 4568899999999999999999987543221111111111110 0122221112233444433 5679999999988
Q ss_pred CCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC---CCCHhhhcccc---eeecCCCCHHHHHHH
Q psy8969 461 GKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID---TIPEPLRDRME---MIDVSGYVAEEKVAI 534 (1230)
Q Consensus 461 ~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~---~I~~~L~~R~~---~i~~~~~~~~e~~~i 534 (1230)
+.... ....+... ++.-.+..+-++++.-..+. .+.+-|++||+ ++.+.++..+.+..|
T Consensus 188 ~gk~~--~qeefFh~-------------FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 188 AGKER--TQEEFFHT-------------FNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred cCChh--HHHHHHHH-------------HHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 54311 12222222 22223334434444334444 45599999998 589999999999999
Q ss_pred HHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q psy8969 535 AAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKV 588 (1230)
Q Consensus 535 ~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~ 588 (1230)
+.+.. ....+.++++++..+++++. ..||.|+..+.++...+
T Consensus 253 L~kka----------~~~~~~i~~ev~~~la~~~~--~nvReLegaL~~l~~~a 294 (408)
T COG0593 253 LRKKA----------EDRGIEIPDEVLEFLAKRLD--RNVRELEGALNRLDAFA 294 (408)
T ss_pred HHHHH----------HhcCCCCCHHHHHHHHHHhh--ccHHHHHHHHHHHHHHH
Confidence 87722 13578899999999999864 45899999998887654
No 240
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.59 E-value=5.2e-08 Score=117.25 Aligned_cols=57 Identities=28% Similarity=0.589 Sum_probs=48.7
Q ss_pred cccChHHHHHHHHHHH--HHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC-CCeEEEe
Q psy8969 355 DHYGMEDVKKRILEFI--AVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN-REYFRFS 413 (1230)
Q Consensus 355 d~~G~~~vK~~i~e~l--~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~-~~~~~~~ 413 (1230)
|||||++++++|.+|+ |+..+. .+.++|||+||||+||||||++||+.|. .|++.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~k 136 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLK 136 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeec
Confidence 7999999999999999 666663 4678999999999999999999999985 3555553
No 241
>PRK12377 putative replication protein; Provisional
Probab=98.58 E-value=1.6e-07 Score=104.63 Aligned_cols=132 Identities=20% Similarity=0.241 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcchhHHHhhcccccccc-
Q psy8969 358 GMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSDVAEIKGHRRTYVGA- 433 (1230)
Q Consensus 358 G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d~~~i~g~~~~~~g~- 433 (1230)
|+..+.....+|+.... . ....|+|+||||||||.||.+||+.+. ...+.+++..+.+ .+. ..|...
T Consensus 82 ~~~~a~~~a~~~a~~~~-~---~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~--~l~---~~~~~~~ 152 (248)
T PRK12377 82 GQRYALSQAKSIADELM-T---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS--RLH---ESYDNGQ 152 (248)
T ss_pred hHHHHHHHHHHHHHHHH-h---cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH--HHH---HHHhccc
Confidence 55556666666653221 1 235799999999999999999999984 4444444433222 121 122211
Q ss_pred CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-----C
Q psy8969 434 MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-----D 508 (1230)
Q Consensus 434 ~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-----~ 508 (1230)
....+++. -...+||+||||+.... .......|.+++|...+ .+.-.|.|||.. .
T Consensus 153 ~~~~~l~~----l~~~dLLiIDDlg~~~~--s~~~~~~l~~ii~~R~~--------------~~~ptiitSNl~~~~l~~ 212 (248)
T PRK12377 153 SGEKFLQE----LCKVDLLVLDEIGIQRE--TKNEQVVLNQIIDRRTA--------------SMRSVGMLTNLNHEAMST 212 (248)
T ss_pred hHHHHHHH----hcCCCEEEEcCCCCCCC--CHHHHHHHHHHHHHHHh--------------cCCCEEEEcCCCHHHHHH
Confidence 11122222 24578999999976532 11234566666664321 123457788954 2
Q ss_pred CCCHhhhccc
Q psy8969 509 TIPEPLRDRM 518 (1230)
Q Consensus 509 ~I~~~L~~R~ 518 (1230)
.+...++||+
T Consensus 213 ~~~~ri~dRl 222 (248)
T PRK12377 213 LLGERVMDRM 222 (248)
T ss_pred HhhHHHHHHH
Confidence 3455666665
No 242
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.1e-07 Score=108.07 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=84.1
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCCeE---EEecCCcchhHHH--hhccc-ccccc--------------CchhH
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYF---RFSVGGMSDVAEI--KGHRR-TYVGA--------------MPGKV 438 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~~~---~~~~~~~~d~~~i--~g~~~-~~~g~--------------~~g~i 438 (1230)
.-+..+||+||+|+|||++|+.+|+.+...-- ...+|...+-..+ ..|.. .++.. .-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44567999999999999999999999853100 0011111110000 00100 00100 01123
Q ss_pred HHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHh
Q psy8969 439 IQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEP 513 (1230)
Q Consensus 439 ~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~ 513 (1230)
++....+. ....|+|||++|.+.. ...++|+++|+.- . .++.||++|+.++.|++.
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~----~a~naLLk~LEep-------------~--~~~~~Ilvth~~~~ll~t 159 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL----QAANSLLKVLEEP-------------P--PQVVFLLVSHAADKVLPT 159 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH----HHHHHHHHHHHhC-------------c--CCCEEEEEeCChHhChHH
Confidence 33322221 2345999999998732 3456667666531 1 346788889999999999
Q ss_pred hhcccceeecCCCCHHHHHHHHH
Q psy8969 514 LRDRMEMIDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 514 L~~R~~~i~~~~~~~~e~~~i~~ 536 (1230)
+++||.++.+..++.++....+.
T Consensus 160 i~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 160 IKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred HHHHhhhhcCCCCCHHHHHHHHH
Confidence 99999999999998888765554
No 243
>PRK08116 hypothetical protein; Validated
Probab=98.56 E-value=2.4e-07 Score=104.82 Aligned_cols=124 Identities=19% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhccccccccC---chhHHHHHHhhcCCCCEEE
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGAM---PGKVIQCMKKTKTENPLVL 453 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~~---~g~i~~~~~~~~~~~pvil 453 (1230)
.+.+++|+||||+|||.||.+||+.+ +.+++.+++..+.+ .+. ..|-+.. ...+++. -...++|+
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~--~i~---~~~~~~~~~~~~~~~~~----l~~~dlLv 183 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLN--RIK---STYKSSGKEDENEIIRS----LVNADLLI 183 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--HHH---HHHhccccccHHHHHHH----hcCCCEEE
Confidence 34579999999999999999999986 66776666544322 222 1222211 1223222 23567999
Q ss_pred EecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-CC----CCHhhhcc----cceeecC
Q psy8969 454 IDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-DT----IPEPLRDR----MEMIDVS 524 (1230)
Q Consensus 454 lDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-~~----I~~~L~~R----~~~i~~~ 524 (1230)
|||+..... .......|+++||... + ....+|+|||.. +. ++..+.|| +..|.+.
T Consensus 184 iDDlg~e~~--t~~~~~~l~~iin~r~-------------~-~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~ 247 (268)
T PRK08116 184 LDDLGAERD--TEWAREKVYNIIDSRY-------------R-KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENE 247 (268)
T ss_pred EecccCCCC--CHHHHHHHHHHHHHHH-------------H-CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEee
Confidence 999964311 1122345666665421 1 123467778854 23 46788888 4457777
Q ss_pred CCCH
Q psy8969 525 GYVA 528 (1230)
Q Consensus 525 ~~~~ 528 (1230)
+...
T Consensus 248 g~d~ 251 (268)
T PRK08116 248 GKSY 251 (268)
T ss_pred CcCh
Confidence 7653
No 244
>KOG1969|consensus
Probab=98.53 E-value=6.1e-07 Score=108.71 Aligned_cols=167 Identities=21% Similarity=0.318 Sum_probs=101.7
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHH-----hhcCCCCEE
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMK-----KTKTENPLV 452 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~-----~~~~~~pvi 452 (1230)
.+..+++||.||||-||||||..||+..|...+.|++++-+....++. +|..+.. .|+..+..+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~-----------kI~~avq~~s~l~adsrP~CL 391 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKE-----------KIENAVQNHSVLDADSRPVCL 391 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHH-----------HHHHHHhhccccccCCCcceE
Confidence 345589999999999999999999999999999999887766444321 1222221 133445588
Q ss_pred EEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcccc----------CCceEEEEecCCCCCCCHhhhc---ccc
Q psy8969 453 LIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD----------LSRVLFICTANVIDTIPEPLRD---RME 519 (1230)
Q Consensus 453 llDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d----------~s~v~~I~TaN~~~~I~~~L~~---R~~ 519 (1230)
+|||||... .-..+++|.++....... .+-.-.-+ +.+ -+||-+|.+.+ |+|+. =..
T Consensus 392 ViDEIDGa~----~~~Vdvilslv~a~~k~~---~Gkq~~~~~~rkkkr~~~L~R-PIICICNdLYa--PaLR~Lr~~A~ 461 (877)
T KOG1969|consen 392 VIDEIDGAP----RAAVDVILSLVKATNKQA---TGKQAKKDKKRKKKRSKLLTR-PIICICNDLYA--PALRPLRPFAE 461 (877)
T ss_pred EEecccCCc----HHHHHHHHHHHHhhcchh---hcCcccchhhhhhhccccccC-CEEEEecCccc--hhhhhcccceE
Confidence 899999532 112567777775221100 00000011 222 24555687763 55554 456
Q ss_pred eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHH
Q psy8969 520 MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNL 577 (1230)
Q Consensus 520 ~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l 577 (1230)
+|.|.+++..-.++-++. + ...+.+..+..+|.+|++.+ +..||.=
T Consensus 462 ii~f~~p~~s~Lv~RL~~-----I-----C~rE~mr~d~~aL~~L~el~--~~DIRsC 507 (877)
T KOG1969|consen 462 IIAFVPPSQSRLVERLNE-----I-----CHRENMRADSKALNALCELT--QNDIRSC 507 (877)
T ss_pred EEEecCCChhHHHHHHHH-----H-----HhhhcCCCCHHHHHHHHHHh--cchHHHH
Confidence 788887777655432221 2 23456777888899988664 4556653
No 245
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.53 E-value=9.7e-07 Score=107.69 Aligned_cols=187 Identities=20% Similarity=0.330 Sum_probs=116.5
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchh---HHHhhcccc-ccccC---chhHHHHHHhhcCCCC
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDV---AEIKGHRRT-YVGAM---PGKVIQCMKKTKTENP 450 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~---~~i~g~~~~-~~g~~---~g~i~~~~~~~~~~~p 450 (1230)
...+++.|++||||+++|++|.... +.+|+.+++..+.+. .++.|+... +.|+. +|.+ ....+.
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~------~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLF------ERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCce------EECCCC
Confidence 3568899999999999999998764 479999999887652 334554332 22222 2221 223467
Q ss_pred EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-------CCCCHhhhcccceee-
Q psy8969 451 LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------DTIPEPLRDRMEMID- 522 (1230)
Q Consensus 451 villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------~~I~~~L~~R~~~i~- 522 (1230)
+|||||||.+.. +....|+.+|+... |... -+...-..++.+|+|||.. ..+.+.|..|+..+.
T Consensus 240 tl~ld~i~~l~~----~~q~~L~~~l~~~~---~~~~-~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i 311 (457)
T PRK11361 240 TLLLDEIGEMPL----VLQAKLLRILQERE---FERI-GGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHL 311 (457)
T ss_pred EEEEechhhCCH----HHHHHHHHHHhcCc---EEeC-CCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcccee
Confidence 999999999843 34667777775422 1100 0000011357888888854 356677888887654
Q ss_pred -cCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 523 -VSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 523 -~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
++++-. ++...++ ++++.+.-.+.+ ...+.++++++..+. .|..-++||.|++.|+.++
T Consensus 312 ~~ppLreR~~di~~l~-~~~l~~~~~~~~--~~~~~~~~~a~~~L~-~~~wpgNv~eL~~~~~~~~ 373 (457)
T PRK11361 312 ILPPLRDRREDISLLA-NHFLQKFSSENQ--RDIIDIDPMAMSLLT-AWSWPGNIRELSNVIERAV 373 (457)
T ss_pred cCCChhhchhhHHHHH-HHHHHHHHHHcC--CCCCCcCHHHHHHHH-cCCCCCcHHHHHHHHHHHH
Confidence 444332 3333343 444444433333 234578899987775 6667889999999998855
No 246
>PHA02768 hypothetical protein; Provisional
Probab=98.52 E-value=2.6e-08 Score=83.20 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=39.4
Q ss_pred cccCCcccccccccCchhhhhhcccccCCCCEeecccccCccccchhhHH
Q psy8969 1164 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQ 1213 (1230)
Q Consensus 1164 PykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF~~ks~Lk 1213 (1230)
-|.|+ .|||.|++.++|..|||+|+ +||+|. .|+|.|.+.+.|.
T Consensus 5 ~y~C~--~CGK~Fs~~~~L~~H~r~H~--k~~kc~--~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECP--ICGEIYIKRKSMITHLRKHN--TNLKLS--NCKRISLRTGEYI 48 (55)
T ss_pred ccCcc--hhCCeeccHHHHHHHHHhcC--CcccCC--cccceecccceeE
Confidence 38995 69999999999999999999 799995 7999999888763
No 247
>PRK15115 response regulator GlrR; Provisional
Probab=98.51 E-value=1.2e-06 Score=106.39 Aligned_cols=188 Identities=21% Similarity=0.273 Sum_probs=115.5
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcchh---HHHhhccccc-cccC---chhHHHHHHhhcCCCC
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMSDV---AEIKGHRRTY-VGAM---PGKVIQCMKKTKTENP 450 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~d~---~~i~g~~~~~-~g~~---~g~i~~~~~~~~~~~p 450 (1230)
...+++.|++|+|||++|++|..... .+|+.++++.+.+. .++.||.+.. .|+. +|.+ ....+.
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~------~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLF------QAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcE------EECCCC
Confidence 45688999999999999999988854 79999999887652 3345554432 2221 1211 123457
Q ss_pred EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-------CCCCHhhhccccee--
Q psy8969 451 LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------DTIPEPLRDRMEMI-- 521 (1230)
Q Consensus 451 villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------~~I~~~L~~R~~~i-- 521 (1230)
.|||||||.+.. +....|+.+|+..+... + -+....-.++.+|+||+.. ..+.+.|..|+..+
T Consensus 231 tl~l~~i~~l~~----~~q~~L~~~l~~~~~~~-~---g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i 302 (444)
T PRK15115 231 TLFLDEIGDMPA----PLQVKLLRVLQERKVRP-L---GSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSL 302 (444)
T ss_pred EEEEEccccCCH----HHHHHHHHHHhhCCEEe-C---CCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeee
Confidence 999999999843 34566777775432110 0 0001112367888888852 13445566676654
Q ss_pred ecCCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8969 522 DVSGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 522 ~~~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r 586 (1230)
.++++-. +|...++ ++++.+.-..++. .-..++++++..|. .|..-+++|.|++.|+.++.
T Consensus 303 ~lPpLr~R~eDi~~l~-~~~l~~~~~~~~~--~~~~~~~~a~~~L~-~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 303 KIPALAERTEDIPLLA-NHLLRQAAERHKP--FVRAFSTDAMKRLM-TASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred cCCChHhccccHHHHH-HHHHHHHHHHhCC--CCCCcCHHHHHHHH-hCCCCChHHHHHHHHHHHHH
Confidence 4444332 2333344 4444444333332 23358999998876 67778899999999988653
No 248
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.49 E-value=7.8e-06 Score=92.43 Aligned_cols=200 Identities=12% Similarity=0.179 Sum_probs=101.4
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCC-CeEEEec-CCcchhHHHh-hccccc----cccCch----hHHHHHHh-h-cC
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNR-EYFRFSV-GGMSDVAEIK-GHRRTY----VGAMPG----KVIQCMKK-T-KT 447 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~-~~~~~~~-~~~~d~~~i~-g~~~~~----~g~~~g----~i~~~~~~-~-~~ 447 (1230)
+..++|+||||+|||++++.++..+.. .+....+ ..-.+..++. .....+ .+.... .+.+.+.. . ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 457889999999999999999999873 3222111 1111211111 000111 111111 12221111 1 23
Q ss_pred CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC-CceEEEEecCCC--CC----CCHhhhcccc-
Q psy8969 448 ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL-SRVLFICTANVI--DT----IPEPLRDRME- 519 (1230)
Q Consensus 448 ~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~-s~v~~I~TaN~~--~~----I~~~L~~R~~- 519 (1230)
...||+|||+|.+.. +....|..+.+ ...+. ..+.+|+|.... +. -..++.+|+.
T Consensus 123 ~~~vliiDe~~~l~~----~~~~~l~~l~~-------------~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~ 185 (269)
T TIGR03015 123 KRALLVVDEAQNLTP----ELLEELRMLSN-------------FQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIA 185 (269)
T ss_pred CCeEEEEECcccCCH----HHHHHHHHHhC-------------cccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheee
Confidence 446889999998632 11111111111 11111 234445555421 11 1346778854
Q ss_pred eeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCc
Q psy8969 520 MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDK 599 (1230)
Q Consensus 520 ~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~r~~~~~~~~~~~~~ 599 (1230)
.+.+.+++.+|...++...+ ...|. .....++++++..|.+. | .+-.|.+......++..+. ....
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l-----~~~g~-~~~~~~~~~~~~~i~~~-s-~G~p~~i~~l~~~~~~~a~----~~~~-- 251 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRL-----ERAGN-RDAPVFSEGAFDAIHRF-S-RGIPRLINILCDRLLLSAF----LEEK-- 251 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHH-----HHcCC-CCCCCcCHHHHHHHHHH-c-CCcccHHHHHHHHHHHHHH----HcCC--
Confidence 68899999999877665544 23343 22345788888887753 3 3335555544444333322 2222
Q ss_pred eEechhhhhhhc
Q psy8969 600 VTVTNDNLSDFV 611 (1230)
Q Consensus 600 ~~i~~~~~~~~~ 611 (1230)
-.|+.+.++..+
T Consensus 252 ~~i~~~~v~~~~ 263 (269)
T TIGR03015 252 REIGGEEVREVI 263 (269)
T ss_pred CCCCHHHHHHHH
Confidence 247888777654
No 249
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.48 E-value=4.8e-07 Score=112.12 Aligned_cols=206 Identities=17% Similarity=0.223 Sum_probs=119.5
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCC--CeEEEecCCcchhHHHhhcc--cc-ccc---cCchhHHHHHHhhcCCCCEEE
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNR--EYFRFSVGGMSDVAEIKGHR--RT-YVG---AMPGKVIQCMKKTKTENPLVL 453 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~--~~~~~~~~~~~d~~~i~g~~--~~-~~g---~~~g~i~~~~~~~~~~~pvil 453 (1230)
.++++-|++|+||++++++++..|.. ||+++-.+ +++.+-+.|-. .+ ..| -.||.| +...+.|+|
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~-~t~~~L~Gg~Dl~~~l~~g~~~~~pGll------a~Ah~GvL~ 98 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPG-IADDRLLGGLDLAATLRAGRPVAQRGLL------AEADGGVLV 98 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCC-CcHHHccCCchHHhHhhcCCcCCCCCce------eeccCCEEE
Confidence 46999999999999999999999865 88877642 22211111110 00 001 246655 566788999
Q ss_pred EecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC---CCCCHhhhcccce-eecCCCCHH
Q psy8969 454 IDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI---DTIPEPLRDRMEM-IDVSGYVAE 529 (1230)
Q Consensus 454 lDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~---~~I~~~L~~R~~~-i~~~~~~~~ 529 (1230)
|||+-.+ .....++|++.|+..++.--.+. ..+.+. .++++|+|-|.. ..|+++|+|||.+ |.+......
T Consensus 99 lDe~n~~----~~~~~~aLleame~G~vtIeR~G-~s~~~P-a~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~ 172 (584)
T PRK13406 99 LAMAERL----EPGTAARLAAALDTGEVRLERDG-LALRLP-ARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALR 172 (584)
T ss_pred ecCcccC----CHHHHHHHHHHHhCCcEEEEECC-cEEecC-CCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChH
Confidence 9999876 44568899999887554311111 111122 578899986643 5699999999996 567666655
Q ss_pred HHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHHhhcCCCceEechhh
Q psy8969 530 EKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV---RNLQKHIEKVTRKVALTIVKKESDKVTVTNDN 606 (1230)
Q Consensus 530 e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gv---R~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~ 606 (1230)
+.... .....++...... ...+.++++.+.++.+ .+...|+ |..-..+. +.|..| .+.+ .-.|+.++
T Consensus 173 ~~~~~--~~~~~~I~~AR~r-l~~v~v~~~~l~~i~~-~~~~~gv~S~Ra~i~llr-aARa~A--aL~G---r~~V~~~d 242 (584)
T PRK13406 173 DAREI--PIDADDIAAARAR-LPAVGPPPEAIAALCA-AAAALGIASLRAPLLALR-AARAAA--ALAG---RTAVEEED 242 (584)
T ss_pred Hhccc--CCCHHHHHHHHHH-HccCCCCHHHHHHHHH-HHHHhCCCCcCHHHHHHH-HHHHHH--HHcC---CCCCCHHH
Confidence 43210 0000011111110 1368889999988774 3445555 66533332 222222 1222 23477777
Q ss_pred hhhh
Q psy8969 607 LSDF 610 (1230)
Q Consensus 607 ~~~~ 610 (1230)
|.+.
T Consensus 243 v~~A 246 (584)
T PRK13406 243 LALA 246 (584)
T ss_pred HHHH
Confidence 7553
No 250
>PRK08181 transposase; Validated
Probab=98.46 E-value=2.8e-07 Score=104.03 Aligned_cols=122 Identities=20% Similarity=0.289 Sum_probs=69.0
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEec
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDE 456 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDE 456 (1230)
.+..|+|+||||||||.||.+||.++ |...+.+++..+.+ ++... + ..+...+.+... ...++|+|||
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~--~l~~a---~---~~~~~~~~l~~l-~~~dLLIIDD 175 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ--KLQVA---R---RELQLESAIAKL-DKFDLLILDD 175 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH--HHHHH---H---hCCcHHHHHHHH-hcCCEEEEec
Confidence 45679999999999999999999865 44444454433222 12111 1 111222222221 2457999999
Q ss_pred ccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC----------CCCHhhhccc----ceee
Q psy8969 457 VDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID----------TIPEPLRDRM----EMID 522 (1230)
Q Consensus 457 IDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~----------~I~~~L~~R~----~~i~ 522 (1230)
++.+..+ ......|+++++.-.. . --+|.|||... .+-.+++||+ .+|.
T Consensus 176 lg~~~~~--~~~~~~Lf~lin~R~~-------------~--~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~ 238 (269)
T PRK08181 176 LAYVTKD--QAETSVLFELISARYE-------------R--RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFE 238 (269)
T ss_pred cccccCC--HHHHHHHHHHHHHHHh-------------C--CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEe
Confidence 9876431 2223567777763211 1 13677788532 2345667775 3566
Q ss_pred cCCCC
Q psy8969 523 VSGYV 527 (1230)
Q Consensus 523 ~~~~~ 527 (1230)
+.|-.
T Consensus 239 ~~g~s 243 (269)
T PRK08181 239 MNVES 243 (269)
T ss_pred cCCcc
Confidence 66633
No 251
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.46 E-value=1.4e-06 Score=106.55 Aligned_cols=209 Identities=20% Similarity=0.326 Sum_probs=130.7
Q ss_pred ccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcch---hHHHhhcccc
Q psy8969 356 HYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSD---VAEIKGHRRT 429 (1230)
Q Consensus 356 ~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d---~~~i~g~~~~ 429 (1230)
..|....-..+.+.+.. .. .....+++.|.+||||+++|++|.... +.||+.++++.+.+ .+++.|+.+.
T Consensus 136 lig~s~~~~~v~~~i~~--~a--~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~ 211 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGR--LS--RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKG 211 (463)
T ss_pred eeecCHHHHHHHHHHHH--Hh--CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCC
Confidence 55555555555555532 22 233468899999999999999998875 46999999988865 2345555432
Q ss_pred -ccccCc---hhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecC
Q psy8969 430 -YVGAMP---GKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN 505 (1230)
Q Consensus 430 -~~g~~~---g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN 505 (1230)
|.|+.. |.+ ....+..|||||||.+.. +....|+++|+...... ........ .++-+|+|+|
T Consensus 212 ~~~~~~~~~~g~~------~~a~~gtl~l~ei~~l~~----~~q~~ll~~l~~~~~~~-~~~~~~~~---~~~rii~~~~ 277 (463)
T TIGR01818 212 AFTGANTRRQGRF------EQADGGTLFLDEIGDMPL----DAQTRLLRVLADGEFYR-VGGRTPIK---VDVRIVAATH 277 (463)
T ss_pred CCCCcccCCCCcE------EECCCCeEEEEchhhCCH----HHHHHHHHHHhcCcEEE-CCCCceee---eeeEEEEeCC
Confidence 223221 211 123456899999999843 34567777775422100 00000111 2566888887
Q ss_pred CC-------CCCCHhhhcccce--eecCCCC--HHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhH
Q psy8969 506 VI-------DTIPEPLRDRMEM--IDVSGYV--AEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 506 ~~-------~~I~~~L~~R~~~--i~~~~~~--~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gv 574 (1230)
.. ..+.+.|+.|+.+ |.++++. .+|...++..++ .+.-...|. ....++++++..|. .|..-++|
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l-~~~~~~~~~--~~~~~~~~a~~~L~-~~~wpgNv 353 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFL-ALAARELDV--EPKLLDPEALERLK-QLRWPGNV 353 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHH-HHHHHHhCC--CCCCcCHHHHHHHH-hCCCCChH
Confidence 43 3566788889874 6677766 467666666555 334334332 23468999988876 56778899
Q ss_pred HHHHHHHHHHHH
Q psy8969 575 RNLQKHIEKVTR 586 (1230)
Q Consensus 575 R~l~~~i~~i~r 586 (1230)
|.|++.++.++.
T Consensus 354 reL~~~~~~~~~ 365 (463)
T TIGR01818 354 RQLENLCRWLTV 365 (463)
T ss_pred HHHHHHHHHHHH
Confidence 999999988664
No 252
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=5.7e-07 Score=90.33 Aligned_cols=118 Identities=25% Similarity=0.361 Sum_probs=75.3
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhC--CCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhh-cCCCCEEEEecc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALN--REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKT-KTENPLVLIDEV 457 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~--~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~-~~~~pvillDEI 457 (1230)
+++++|+||.|||||++++.+|+.+. ..++.+++.+..+..... +. +.+.+... .....+||||||
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~i~iDEi 70 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD----------PD-LLEYFLELIKPGKKYIFIDEI 70 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh----------hh-hHHHHHHhhccCCcEEEEehh
Confidence 46899999999999999999999887 778888876655421110 00 22222222 224678999999
Q ss_pred cccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC----CCCCHhhhcccceeecCCCCHHH
Q psy8969 458 DKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI----DTIPEPLRDRMEMIDVSGYVAEE 530 (1230)
Q Consensus 458 Dk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~----~~I~~~L~~R~~~i~~~~~~~~e 530 (1230)
..+. +....+-.+.| .+ .++-||+|+... ..+...|..|...+.+.+++..|
T Consensus 71 q~~~-----~~~~~lk~l~d---------~~-------~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 71 QYLP-----DWEDALKFLVD---------NG-------PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhc-----cHHHHHHHHHH---------hc-------cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 9862 22222222222 11 244555555433 34567888999999999998877
No 253
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=5.2e-07 Score=102.14 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=80.0
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHH--hhccccc-c---ccC----chhHHHH---HHhh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEI--KGHRRTY-V---GAM----PGKVIQC---MKKT 445 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i--~g~~~~~-~---g~~----~g~i~~~---~~~~ 445 (1230)
.-+..+||+||+|+||+++|.++|+.+...-.. .+...+ ..|-.-+ + |.. -..|++. +...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~------~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~ 90 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSP------EAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIH 90 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc------cHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhC
Confidence 445679999999999999999999998542100 000000 0011110 1 100 0112222 2111
Q ss_pred c--CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeec
Q psy8969 446 K--TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDV 523 (1230)
Q Consensus 446 ~--~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~ 523 (1230)
. ....|++||++|++.. ..+++||..|+.- -.+++||+.|+.++.|.|.++|||..+.+
T Consensus 91 p~e~~~kv~ii~~ad~mt~----~AaNaLLK~LEEP---------------p~~~~fiL~~~~~~~ll~TI~SRcq~~~~ 151 (290)
T PRK05917 91 PYESPYKIYIIHEADRMTL----DAISAFLKVLEDP---------------PQHGVIILTSAKPQRLPPTIRSRSLSIHI 151 (290)
T ss_pred ccCCCceEEEEechhhcCH----HHHHHHHHHhhcC---------------CCCeEEEEEeCChhhCcHHHHhcceEEEc
Confidence 1 2335999999999843 5688999998742 25889999999999999999999999998
Q ss_pred CCC
Q psy8969 524 SGY 526 (1230)
Q Consensus 524 ~~~ 526 (1230)
.+.
T Consensus 152 ~~~ 154 (290)
T PRK05917 152 PME 154 (290)
T ss_pred cch
Confidence 754
No 254
>KOG2680|consensus
Probab=98.44 E-value=3.8e-06 Score=92.44 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=54.2
Q ss_pred ccCCceEEEEecC------------CCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHH
Q psy8969 493 VDLSRVLFICTAN------------VIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSA 560 (1230)
Q Consensus 493 ~d~s~v~~I~TaN------------~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~ 560 (1230)
-|++.|++++ || +++.||-.|+|||-+|...+|+.+|...|++-. ...+++.+.+++
T Consensus 314 ~d~~Piiima-TNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~iR----------c~EEdv~m~~~A 382 (454)
T KOG2680|consen 314 NDMAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILRIR----------CQEEDVEMNPDA 382 (454)
T ss_pred hccCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHHhh----------hhhhccccCHHH
Confidence 5677777665 44 567999999999999999999999998876432 335688899999
Q ss_pred HHHHHHHhhhhhhHHHH
Q psy8969 561 IQVLIKNYCRESGVRNL 577 (1230)
Q Consensus 561 ~~~li~~~~~e~gvR~l 577 (1230)
+..|.+ ...+.++|--
T Consensus 383 ~d~Lt~-i~~~tsLRYa 398 (454)
T KOG2680|consen 383 LDLLTK-IGEATSLRYA 398 (454)
T ss_pred HHHHHH-hhhhhhHHHH
Confidence 877753 3345555543
No 255
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.41 E-value=3.5e-06 Score=103.22 Aligned_cols=203 Identities=14% Similarity=0.265 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecC-Ccch----hHHHhhccc---cc
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVG-GMSD----VAEIKGHRR---TY 430 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~-~~~d----~~~i~g~~~---~~ 430 (1230)
..+-.+.|..||.. ...+..+.++|||.|||||||||+++.||++||..+..+.-. ++.+ ..+..+... .|
T Consensus 24 hkkKv~eV~~wl~~-~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f 102 (519)
T PF03215_consen 24 HKKKVEEVRSWLEE-MFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEF 102 (519)
T ss_pred cHHHHHHHHHHHHH-HhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccc
Confidence 33334456666643 234455667999999999999999999999999888776421 1100 001111000 01
Q ss_pred cccCchhHHHHH--Hhh------------cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 431 VGAMPGKVIQCM--KKT------------KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 431 ~g~~~g~i~~~~--~~~------------~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
.+. ......| ..+ .....||||||+-.+. ..++ ..+.++|.. |+.. .-.
T Consensus 103 ~sq--~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~---~~~~-~~f~~~L~~---------~l~~--~~~ 165 (519)
T PF03215_consen 103 LSQ--SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVF---HRDT-SRFREALRQ---------YLRS--SRC 165 (519)
T ss_pred cch--hhhhccccccccccccccccCCCcCCCceEEEeecccccc---chhH-HHHHHHHHH---------HHHc--CCC
Confidence 000 0011111 101 1234589999988653 3344 555554432 1111 112
Q ss_pred -ceEEEEec-------CCCC--------CCCHhhhc--ccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccC-
Q psy8969 497 -RVLFICTA-------NVID--------TIPEPLRD--RMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLE- 557 (1230)
Q Consensus 497 -~v~~I~Ta-------N~~~--------~I~~~L~~--R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~- 557 (1230)
.++||+|- |... -+++.++. ++..|.|.+-+..=....+.+.+..+.- .+ ......+
T Consensus 166 ~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~---~~-~~~~~~p~ 241 (519)
T PF03215_consen 166 LPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR---SS-SGKNKVPD 241 (519)
T ss_pred CCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh---hh-cCCccCCC
Confidence 78888871 1111 35677766 5667888887776655555554422111 11 1111222
Q ss_pred -HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 558 -PSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 558 -~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
.+.|..|+.. ..+++|..-..++-+|
T Consensus 242 ~~~~l~~I~~~--s~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 242 KQSVLDSIAES--SNGDIRSAINNLQFWC 268 (519)
T ss_pred hHHHHHHHHHh--cCchHHHHHHHHHHHh
Confidence 3346666543 3467777655555544
No 256
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=7e-07 Score=101.46 Aligned_cols=149 Identities=13% Similarity=0.208 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE--EecCCcchhHHH--hhcccc-ccc-
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR--FSVGGMSDVAEI--KGHRRT-YVG- 432 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~--~~~~~~~d~~~i--~g~~~~-~~g- 432 (1230)
+..+++.+...+.. ..-+..+||+|| +||+++|+.+|+.+...--. -.+|...+-..+ ..|..- ++.
T Consensus 7 q~~~~~~L~~~~~~-----~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p 79 (290)
T PRK07276 7 QPKVFQRFQTILEQ-----DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEP 79 (290)
T ss_pred HHHHHHHHHHHHHc-----CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecC
Confidence 45555555555432 244567899996 68999999999988543100 011111111111 112221 121
Q ss_pred --cC--chhHHHHHHhhc-----CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEe
Q psy8969 433 --AM--PGKVIQCMKKTK-----TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICT 503 (1230)
Q Consensus 433 --~~--~g~i~~~~~~~~-----~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~T 503 (1230)
.. -..|++...... ....|++||++|++.. ..+++||..|+.- -.+++||++
T Consensus 80 ~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~----~AaNaLLKtLEEP---------------p~~t~~iL~ 140 (290)
T PRK07276 80 QGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHV----NAANSLLKVIEEP---------------QSEIYIFLL 140 (290)
T ss_pred CCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCH----HHHHHHHHHhcCC---------------CCCeEEEEE
Confidence 10 123333332221 1235999999999853 4678999998752 257899999
Q ss_pred cCCCCCCCHhhhcccceeecCCCCHHHHHHH
Q psy8969 504 ANVIDTIPEPLRDRMEMIDVSGYVAEEKVAI 534 (1230)
Q Consensus 504 aN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i 534 (1230)
|+.++.|.|.++|||.+|.|+. ..++...+
T Consensus 141 t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~ 170 (290)
T PRK07276 141 TNDENKVLPTIKSRTQIFHFPK-NEAYLIQL 170 (290)
T ss_pred ECChhhCchHHHHcceeeeCCC-cHHHHHHH
Confidence 9999999999999999999966 54444333
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.3e-06 Score=98.23 Aligned_cols=151 Identities=23% Similarity=0.359 Sum_probs=81.4
Q ss_pred hcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC---
Q psy8969 331 TSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR--- 407 (1230)
Q Consensus 331 ~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~--- 407 (1230)
..+|+. .+-+.+|+.... .+..++...+..+..+.. ++..++|+||||||||.||-|||..+-.
T Consensus 68 a~~p~~-k~~~~~d~~~~~-------~~~~~~l~~~~~~~~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~ 134 (254)
T COG1484 68 ASFPAK-KTFEEFDFEFQP-------GIDKKALEDLASLVEFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGI 134 (254)
T ss_pred hcCCcc-CCcccccccCCc-------chhHHHHHHHHHHHHHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 567776 333444433222 234444444544443222 6788999999999999999999998753
Q ss_pred CeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhh
Q psy8969 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDH 487 (1230)
Q Consensus 408 ~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~ 487 (1230)
....+.+.++. .++...... |.....+.. .-.+-+|++||||-....+ .-..+.++++++.--+
T Consensus 135 sv~f~~~~el~--~~Lk~~~~~--~~~~~~l~~----~l~~~dlLIiDDlG~~~~~--~~~~~~~~q~I~~r~~------ 198 (254)
T COG1484 135 SVLFITAPDLL--SKLKAAFDE--GRLEEKLLR----ELKKVDLLIIDDIGYEPFS--QEEADLLFQLISRRYE------ 198 (254)
T ss_pred eEEEEEHHHHH--HHHHHHHhc--CchHHHHHH----HhhcCCEEEEecccCccCC--HHHHHHHHHHHHHHHh------
Confidence 33333332222 123222221 333333333 2345689999998764321 1123455555443111
Q ss_pred ccCccccCCceEEEEecCCCC----------CCCHhhhcccc
Q psy8969 488 YLDVPVDLSRVLFICTANVID----------TIPEPLRDRME 519 (1230)
Q Consensus 488 ~~~~~~d~s~v~~I~TaN~~~----------~I~~~L~~R~~ 519 (1230)
+..+ |.|+|... .+..+++||+.
T Consensus 199 --------~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~ 231 (254)
T COG1484 199 --------SRSL-IITSNLSFGEWDELFGDDALTEALLDRIL 231 (254)
T ss_pred --------hccc-eeecCCChHHHHhhccCchhHHHHHHHHH
Confidence 2334 88899653 12366666654
No 258
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.40 E-value=7.8e-08 Score=112.12 Aligned_cols=178 Identities=25% Similarity=0.324 Sum_probs=91.3
Q ss_pred hhhcccccChHHHHHHHHHHHHHhhhcCC-----CCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHH
Q psy8969 350 KILDDDHYGMEDVKKRILEFIAVSQLKGT-----TQG-KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEI 423 (1230)
Q Consensus 350 ~~l~~d~~G~~~vK~~i~e~l~~~~~~~~-----~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i 423 (1230)
+.+-..+||++.+|..|+=.|.-...... .++ -.|||+|.||+|||.|.+.+++..-+. +..+..|.+. ..+
T Consensus 20 ~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~-~gL 97 (331)
T PF00493_consen 20 NSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSA-AGL 97 (331)
T ss_dssp HHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTC-CCC
T ss_pred HHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCccc-CCc
Confidence 34557899999999988644421111111 122 359999999999999999887765543 3444333221 001
Q ss_pred hh------ccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcccc-CC
Q psy8969 424 KG------HRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD-LS 496 (1230)
Q Consensus 424 ~g------~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d-~s 496 (1230)
.. +...|+- .+|.+ ....+.|++|||+|++.. +...+|+++++.... ..-.. ++... ..
T Consensus 98 ta~~~~d~~~~~~~l-eaGal------vlad~GiccIDe~dk~~~----~~~~~l~eaMEqq~i-si~ka--gi~~~l~a 163 (331)
T PF00493_consen 98 TASVSRDPVTGEWVL-EAGAL------VLADGGICCIDEFDKMKE----DDRDALHEAMEQQTI-SIAKA--GIVTTLNA 163 (331)
T ss_dssp CEEECCCGGTSSECE-EE-HH------HHCTTSEEEECTTTT--C----HHHHHHHHHHHCSCE-EECTS--SSEEEEE-
T ss_pred cceeccccccceeEE-eCCch------hcccCceeeecccccccc----hHHHHHHHHHHcCee-ccchh--hhcccccc
Confidence 00 0111211 12322 234678999999999843 457889998864221 11110 11111 24
Q ss_pred ceEEEEecCCCC-------------CCCHhhhccccee-ecCCCCHHHHHHHHHHhhcchh
Q psy8969 497 RVLFICTANVID-------------TIPEPLRDRMEMI-DVSGYVAEEKVAIAAQYLIPQA 543 (1230)
Q Consensus 497 ~v~~I~TaN~~~-------------~I~~~L~~R~~~i-~~~~~~~~e~~~i~~~~l~~~~ 543 (1230)
+.-+++++|+.. .++++|++||++| .+.....++.-..+..+++...
T Consensus 164 r~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 164 RCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp --EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred hhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 778999999877 6899999999976 4444444444333444554443
No 259
>PHA00729 NTP-binding motif containing protein
Probab=98.39 E-value=2.4e-06 Score=93.29 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.4
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCe
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREY 409 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~ 409 (1230)
..|+++||||||||+||.+||+.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 3688999999999999999999987433
No 260
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.37 E-value=1.2e-06 Score=97.47 Aligned_cols=131 Identities=19% Similarity=0.299 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhcccccc--c
Q psy8969 358 GMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYV--G 432 (1230)
Q Consensus 358 G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~--g 432 (1230)
++..+...+.+|+... .. ...+++|+||||||||.||.+||..+ |...+.++++.+.+ .+++ .|. +
T Consensus 80 ~q~~al~~a~~~~~~~--~~--~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~--~l~~---~~~~~~ 150 (244)
T PRK07952 80 GQMNALSKARQYVEEF--DG--NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS--AMKD---TFSNSE 150 (244)
T ss_pred hHHHHHHHHHHHHHhh--cc--CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH--HHHH---HHhhcc
Confidence 3445555566665321 11 12479999999999999999999998 55565555433322 1221 121 1
Q ss_pred cCchhHHHHHHhhcCCCCEEEEecccccCCCCCCCh-hhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC---
Q psy8969 433 AMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDP-ASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID--- 508 (1230)
Q Consensus 433 ~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~-~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~--- 508 (1230)
.....+++.+ ...+||+||||+.... .+. ...|.+++|... + .+-..|.|||...
T Consensus 151 ~~~~~~l~~l----~~~dlLvIDDig~~~~---s~~~~~~l~~Ii~~Ry-------------~-~~~~tiitSNl~~~~l 209 (244)
T PRK07952 151 TSEEQLLNDL----SNVDLLVIDEIGVQTE---SRYEKVIINQIVDRRS-------------S-SKRPTGMLTNSNMEEM 209 (244)
T ss_pred ccHHHHHHHh----ccCCEEEEeCCCCCCC---CHHHHHHHHHHHHHHH-------------h-CCCCEEEeCCCCHHHH
Confidence 1222333332 2467999999987531 111 234555665321 1 1335677888542
Q ss_pred --CCCHhhhccc
Q psy8969 509 --TIPEPLRDRM 518 (1230)
Q Consensus 509 --~I~~~L~~R~ 518 (1230)
.++..++||+
T Consensus 210 ~~~~g~ri~sRl 221 (244)
T PRK07952 210 TKLLGERVMDRM 221 (244)
T ss_pred HHHhChHHHHHH
Confidence 3556666766
No 261
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.34 E-value=2e-07 Score=66.73 Aligned_cols=25 Identities=60% Similarity=1.302 Sum_probs=15.9
Q ss_pred hhhhhcccccCCCCEeecccccCcccc
Q psy8969 1181 SRKAHIRTHTGEKPYRCAHEFCSKSFK 1207 (1230)
Q Consensus 1181 ~Lk~H~RtHTGEKPy~C~~e~CGKsF~ 1207 (1230)
+|++||++|+|+|||.|+ .|+|+|+
T Consensus 1 ~l~~H~~~H~~~k~~~C~--~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCP--YCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEES--SSSEEES
T ss_pred CHHHHhhhcCCCCCCCCC--CCcCeeC
Confidence 356666666666666663 5666665
No 262
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=98.33 E-value=2e-07 Score=103.26 Aligned_cols=95 Identities=29% Similarity=0.481 Sum_probs=78.4
Q ss_pred CCCCchhHHHHHHHHHhhhCCCCC--cCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccccccc-cCc----
Q psy8969 688 KDGPSAGITITTALVSLATGKPIK--QNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDF-TDL---- 760 (1230)
Q Consensus 688 kdgpsag~~~~~a~~s~~~~~~v~--~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl-~el---- 760 (1230)
-+|||||.-++.+|++-|+.--.+ ..||=||-|.-.|+|-|||||.-|+.||.+||.+-.++|.+|...- .+-
T Consensus 232 IGGPSAGLMFSL~Iy~qlt~~DL~~g~~IAGTGTI~~DG~VG~IGGI~qKvvAA~~AGA~vFf~P~~~~~e~~s~sny~~ 311 (342)
T COG3480 232 IGGPSAGLMFSLAIYDQLTKGDLTGGRFIAGTGTIEVDGKVGPIGGIDQKVVAAAKAGADVFFVPADNCAEEMSDSNYDE 311 (342)
T ss_pred CCCCchhheeeHHHHhhcccccccCceEEecceeeccCCcccCcccHhHHhHHHHhcCCcEEEecCCccchhhccCCHHH
Confidence 489999999999999999887776 4689999999999999999999999999999999999999775543 111
Q ss_pred ----hhhHhhccceecccchhhhhhc
Q psy8969 761 ----PEYIREGLNVHFVSEWRQVYDL 782 (1230)
Q Consensus 761 ----Pe~vr~~l~i~fvs~~~eVl~i 782 (1230)
-+.+...+.+.++.+..+.++.
T Consensus 312 a~~~ak~l~t~mkivpv~T~q~aldy 337 (342)
T COG3480 312 ALVAAEDLSTAMKIVPVKTLQEALDY 337 (342)
T ss_pred HHHHHHhhcccceEEeechhhhhhhH
Confidence 1334567788888877776653
No 263
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.33 E-value=5.3e-07 Score=87.76 Aligned_cols=104 Identities=26% Similarity=0.453 Sum_probs=56.0
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCC
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKG 463 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~ 463 (1230)
|.|+||||+|||++|+.||+.+...+-.- .....|....-...... .. .++|+++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~------------~~~~vy~~~~~~~~w~g---Y~-~q~vvi~DD~~~~~~~ 64 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEP------------TKDSVYTRNPGDKFWDG---YQ-GQPVVIIDDFGQDNDG 64 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccC------------CCCcEEeCCCccchhhc---cC-CCcEEEEeecCccccc
Confidence 57999999999999999999887443000 00011221111111111 11 4689999999987543
Q ss_pred CCCChhhHHHhhcChhhhhhhhhhccC---ccccCCceEEEEecCC
Q psy8969 464 YSGDPASALLEMLDPEQNANFLDHYLD---VPVDLSRVLFICTANV 506 (1230)
Q Consensus 464 ~~~~~~~all~~ld~~q~~~f~d~~~~---~~~d~s~v~~I~TaN~ 506 (1230)
......+.|+.++++. .|....-+ -..-..-.++|+|||.
T Consensus 65 ~~~~~~~~l~~l~s~~---~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 65 YNYSDESELIRLISSN---PFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cchHHHHHHHHHHhcC---CcccccccHhhCCCccCCCEEEEcCCC
Confidence 2112456666666642 12211111 1122334678888883
No 264
>PRK06526 transposase; Provisional
Probab=98.32 E-value=3.2e-06 Score=94.96 Aligned_cols=90 Identities=21% Similarity=0.349 Sum_probs=48.7
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHH-HhhccccccccCchhHHHHHHhhcCCCCEEEEeccc
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAE-IKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVD 458 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~-i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEID 458 (1230)
.+..|+|+||||||||.||.+|+..+-..-+++-+..+.+..+ +.. .+ ..|.+...+... ...+||+|||++
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~---~~---~~~~~~~~l~~l-~~~dlLIIDD~g 169 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAA---AH---HAGRLQAELVKL-GRYPLLIVDEVG 169 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHH---HH---hcCcHHHHHHHh-ccCCEEEEcccc
Confidence 3567999999999999999999987632212222222222111 110 01 112222333322 235799999999
Q ss_pred ccCCCCCCChhhHHHhhcCh
Q psy8969 459 KIGKGYSGDPASALLEMLDP 478 (1230)
Q Consensus 459 k~~~~~~~~~~~all~~ld~ 478 (1230)
.+..+ ......|+++++.
T Consensus 170 ~~~~~--~~~~~~L~~li~~ 187 (254)
T PRK06526 170 YIPFE--PEAANLFFQLVSS 187 (254)
T ss_pred cCCCC--HHHHHHHHHHHHH
Confidence 76321 1223456666653
No 265
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.29 E-value=1.7e-06 Score=98.19 Aligned_cols=199 Identities=17% Similarity=0.294 Sum_probs=104.0
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCC-Ce--EEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNR-EY--FRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEV 457 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~-~~--~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEI 457 (1230)
+..+||+||+|||||++++.+-..+.. .+ ..++++..+....+...-...+-..-|.+ +.-.....-|+|||++
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~---~gP~~~k~lv~fiDDl 109 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRV---YGPPGGKKLVLFIDDL 109 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEE---EEEESSSEEEEEEETT
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCC---CCCCCCcEEEEEeccc
Confidence 467899999999999999876655543 32 23555554443333211110000000000 0001112348889999
Q ss_pred cccCCCCCCC--hhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC---CCCHhhhcccceeecCCCCHHHHH
Q psy8969 458 DKIGKGYSGD--PASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID---TIPEPLRDRMEMIDVSGYVAEEKV 532 (1230)
Q Consensus 458 Dk~~~~~~~~--~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~---~I~~~L~~R~~~i~~~~~~~~e~~ 532 (1230)
.--..+.-|. |..-|.+++|- ..|.|.--..-..+.++.||++.|+.. .|++-|++.|.++.++.++.+...
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~---~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~~~~p~~~sl~ 186 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDY---GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILNIPYPSDESLN 186 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHC---SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE----TCCHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHh---cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEEecCCChHHHH
Confidence 8765544332 23334444432 233332111124556899999988743 588999999999999999999888
Q ss_pred HHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh--------------hhhhHHHHHHHHHHHHH
Q psy8969 533 AIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC--------------RESGVRNLQKHIEKVTR 586 (1230)
Q Consensus 533 ~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~--------------~e~gvR~l~~~i~~i~r 586 (1230)
.|...++ ...++..++..+-..+.+..+.+.|+-|- .-..+|.|-|.+..+++
T Consensus 187 ~If~~il-~~~l~~~~f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~ 253 (272)
T PF12775_consen 187 TIFSSIL-QSHLKNGGFPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILL 253 (272)
T ss_dssp HHHHHHH-HHHTCHTTSSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhhcccCCCChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHh
Confidence 8877665 33444444433222344555554443332 23456666666666654
No 266
>KOG0482|consensus
Probab=98.29 E-value=1.3e-06 Score=101.60 Aligned_cols=163 Identities=24% Similarity=0.420 Sum_probs=94.8
Q ss_pred HhhhhcccccChHHHHHHHHHHHH--HhhhcCC---CCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEec--CCcch
Q psy8969 348 AAKILDDDHYGMEDVKKRILEFIA--VSQLKGT---TQG-KILCFYGPPGVGKTSIAKSIARALNREYFRFSV--GGMSD 419 (1230)
Q Consensus 348 ~~~~l~~d~~G~~~vK~~i~e~l~--~~~~~~~---~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~--~~~~d 419 (1230)
..+-+--++||+++||+.++=.|. +.+..+. .+| -.|||.|-|||-|+-|-+.|.+..-|-.+.--- +|+.-
T Consensus 336 La~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGL 415 (721)
T KOG0482|consen 336 LAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGL 415 (721)
T ss_pred HHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCcccc
Confidence 334456789999999999887662 1111110 122 249999999999999999999886655443221 11110
Q ss_pred hHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceE
Q psy8969 420 VAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVL 499 (1230)
Q Consensus 420 ~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~ 499 (1230)
-+. -.+....|+|- .+.=......+.|--|||+||+.-. --.|+.||++.. .-+.-..-+....+ .++-
T Consensus 416 TAA--VmkDpvTgEM~---LEGGALVLAD~GICCIDEfDKM~e~----DRtAIHEVMEQQ-TISIaKAGI~TtLN-AR~s 484 (721)
T KOG0482|consen 416 TAA--VMKDPVTGEMV---LEGGALVLADGGICCIDEFDKMDES----DRTAIHEVMEQQ-TISIAKAGINTTLN-ARTS 484 (721)
T ss_pred chh--hhcCCCCCeeE---eccceEEEccCceEeehhhhhhhhh----hhHHHHHHHHhh-hhhhhhhccccchh-hhHH
Confidence 000 01112233331 0000112335678889999998532 236889998752 22221111222222 3667
Q ss_pred EEEecCCCC-------------CCCHhhhccccee
Q psy8969 500 FICTANVID-------------TIPEPLRDRMEMI 521 (1230)
Q Consensus 500 ~I~TaN~~~-------------~I~~~L~~R~~~i 521 (1230)
++++||+.. .+|+||+|||+++
T Consensus 485 ILaAANPayGRYnprrs~e~NI~LPaALLSRFDll 519 (721)
T KOG0482|consen 485 ILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLL 519 (721)
T ss_pred hhhhcCccccccCcccChhHhcCCcHHHHHhhhhh
Confidence 888999653 6899999999975
No 267
>PRK06921 hypothetical protein; Provisional
Probab=98.27 E-value=2.2e-06 Score=97.01 Aligned_cols=88 Identities=17% Similarity=0.274 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC----CCeEEEecCCcchhHHHhhccccccccCch
Q psy8969 361 DVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN----REYFRFSVGGMSDVAEIKGHRRTYVGAMPG 436 (1230)
Q Consensus 361 ~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~----~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g 436 (1230)
.+.....+|+.-........+..|+|+||||+|||.||.+||+++- ...+.++...+.+ .+.. .+ .
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--~l~~---~~-----~ 166 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--DLKD---DF-----D 166 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--HHHH---HH-----H
Confidence 3444444555322211123457799999999999999999999874 3444444322211 1211 11 1
Q ss_pred hHHHHHHhhcCCCCEEEEecccc
Q psy8969 437 KVIQCMKKTKTENPLVLIDEVDK 459 (1230)
Q Consensus 437 ~i~~~~~~~~~~~pvillDEIDk 459 (1230)
...+.+.. -...+||+|||++.
T Consensus 167 ~~~~~~~~-~~~~dlLiIDDl~~ 188 (266)
T PRK06921 167 LLEAKLNR-MKKVEVLFIDDLFK 188 (266)
T ss_pred HHHHHHHH-hcCCCEEEEecccc
Confidence 11112222 23468999999954
No 268
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.27 E-value=7.4e-06 Score=95.17 Aligned_cols=142 Identities=18% Similarity=0.281 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhccccccccCc
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGAMP 435 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~ 435 (1230)
+..+.+....|+..... .+..|+|+||||||||.||.+||+++ |...+.+++..+.+ .+... +....
T Consensus 165 ~~~~~~~~~~f~~~f~~----~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~--~l~~~---~~~~~- 234 (329)
T PRK06835 165 MEKILEKCKNFIENFDK----NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE--ILREI---RFNND- 234 (329)
T ss_pred HHHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH--HHHHH---Hhccc-
Confidence 45556655666643221 23679999999999999999999987 44444455433322 12111 11111
Q ss_pred hhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-C----CC
Q psy8969 436 GKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-D----TI 510 (1230)
Q Consensus 436 g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-~----~I 510 (1230)
....+.+.. -...++|+||++..... .....+.|+++++.... . +--+|.|||.. + .+
T Consensus 235 ~~~~~~~~~-l~~~DLLIIDDlG~e~~--t~~~~~~Lf~iin~R~~-------------~-~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 235 KELEEVYDL-LINCDLLIIDDLGTEKI--TEFSKSELFNLINKRLL-------------R-QKKMIISTNLSLEELLKTY 297 (329)
T ss_pred hhHHHHHHH-hccCCEEEEeccCCCCC--CHHHHHHHHHHHHHHHH-------------C-CCCEEEECCCCHHHHHHHH
Confidence 011111111 22457999999976522 11223566666654221 1 12356777753 2 24
Q ss_pred CHhhhccc----ceeecCCCC
Q psy8969 511 PEPLRDRM----EMIDVSGYV 527 (1230)
Q Consensus 511 ~~~L~~R~----~~i~~~~~~ 527 (1230)
++.+.||+ .+|.+.|..
T Consensus 298 ~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 298 SERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred hHHHHHHHHcCCEEEEecCcC
Confidence 56777876 356666544
No 269
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.26 E-value=2.2e-07 Score=66.51 Aligned_cols=26 Identities=54% Similarity=1.304 Sum_probs=23.6
Q ss_pred hhhccccccCCCCcccCCcccccccccC
Q psy8969 1151 HMKVHLRIHSGIRPYKCPVEYCEKAFST 1178 (1230)
Q Consensus 1151 ~Lk~H~R~HTGEKPykCpve~CgKsF~~ 1178 (1230)
+|.+|+++|+|||||+|+ .|+|+|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~--~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCP--YCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEES--SSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCC--CCcCeeCc
Confidence 589999999999999996 59999974
No 270
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=8.9e-06 Score=93.25 Aligned_cols=138 Identities=11% Similarity=0.140 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC-----------C--eEEEec-CCcchhHHHhh
Q psy8969 360 EDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR-----------E--YFRFSV-GGMSDVAEIKG 425 (1230)
Q Consensus 360 ~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~-----------~--~~~~~~-~~~~d~~~i~g 425 (1230)
+.+++.+...+.. ..-....||+||.|+||+++|+.+|+.+.. | ++.++. |+....
T Consensus 2 ~~~~~~l~~~i~~-----~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~v----- 71 (299)
T PRK07132 2 NNWIKFLDNSATQ-----NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSK----- 71 (299)
T ss_pred chHHHHHHHHHHh-----CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCH-----
Confidence 3455555554422 233467889999999999999999999822 1 112211 110001
Q ss_pred ccccccccCchhHHHHHHhh---c---CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceE
Q psy8969 426 HRRTYVGAMPGKVIQCMKKT---K---TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVL 499 (1230)
Q Consensus 426 ~~~~~~g~~~g~i~~~~~~~---~---~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~ 499 (1230)
..|++..... . ....|++||++|++.. ...++||..|+.. -++++
T Consensus 72 ----------d~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~----~a~NaLLK~LEEP---------------p~~t~ 122 (299)
T PRK07132 72 ----------SEFLSAINKLYFSSFVQSQKKILIIKNIEKTSN----SLLNALLKTIEEP---------------PKDTY 122 (299)
T ss_pred ----------HHHHHHHHHhccCCcccCCceEEEEecccccCH----HHHHHHHHHhhCC---------------CCCeE
Confidence 1233332221 1 2445999999998843 3567888887641 25778
Q ss_pred EEEecCCCCCCCHhhhcccceeecCCCCHHHHHHHHH
Q psy8969 500 FICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 500 ~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~ 536 (1230)
||++|+.++.|.+.+++|+.++.+.+++.++....+.
T Consensus 123 ~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 123 FLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred EEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 8887878899999999999999999999888765543
No 271
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=1.2e-06 Score=97.17 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=83.1
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHH--hhccccc-ccc--Cc---hhHHHHHHh---hc--
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEI--KGHRRTY-VGA--MP---GKVIQCMKK---TK-- 446 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i--~g~~~~~-~g~--~~---g~i~~~~~~---~~-- 446 (1230)
.+..+||+||+|+||..+|.++|+.+-..--.-.+|...+-..+ ..|..-+ +.. .+ ..+++.... ..
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 46679999999999999999999988543110012222221111 1121111 110 01 122222221 11
Q ss_pred -CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCC
Q psy8969 447 -TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSG 525 (1230)
Q Consensus 447 -~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~ 525 (1230)
....|++||++|++.. ..+++||..|+.- -.+++||++|+.++.|.+.++|||..+.++.
T Consensus 86 ~~~~KV~II~~ae~m~~----~AaNaLLK~LEEP---------------p~~t~fiLit~~~~~lLpTI~SRCq~~~~~~ 146 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNK----QSANSLLKLIEEP---------------PKNTYGIFTTRNENNILNTILSRCVQYVVLS 146 (261)
T ss_pred cCCCEEEEeccHhhhCH----HHHHHHHHhhcCC---------------CCCeEEEEEECChHhCchHhhhheeeeecCC
Confidence 1246999999999854 4678999998752 3588999999999999999999999998876
Q ss_pred C
Q psy8969 526 Y 526 (1230)
Q Consensus 526 ~ 526 (1230)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 5
No 272
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=2e-05 Score=93.24 Aligned_cols=138 Identities=17% Similarity=0.261 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChH
Q psy8969 281 AIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGME 360 (1230)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~ 360 (1230)
..++++.+.|.+..++++..+.+..++..-.... +.-..+
T Consensus 109 ~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~----------------------------------------~~~~~~ 148 (388)
T PRK12723 109 PTILKIEDILRENDFSESYIKDINEFIKKEFSLS----------------------------------------DLDDYD 148 (388)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhh----------------------------------------hcCCHH
Confidence 3467788889999999998888887765321000 000112
Q ss_pred HHHHHHHHHHHHh-----hhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC-------CCeEEEecCCcc--------hh
Q psy8969 361 DVKKRILEFIAVS-----QLKGTTQGKILCFYGPPGVGKTSIAKSIARALN-------REYFRFSVGGMS--------DV 420 (1230)
Q Consensus 361 ~vK~~i~e~l~~~-----~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~-------~~~~~~~~~~~~--------d~ 420 (1230)
.+++.+++++... .......+.+++|+||+||||||++.-||..+. .+..-++....+ ..
T Consensus 149 ~v~~~l~~~l~~~i~~~~~~~~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~ 228 (388)
T PRK12723 149 KVRDSVIIYIAKTIKCSGSIIDNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTY 228 (388)
T ss_pred HHHHHHHHHHHHHhhccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHH
Confidence 2333333333211 011123567899999999999999999988653 333333332211 11
Q ss_pred HHHhhccccccccCchhHHHHHHhhcCCCCEEEEeccccc
Q psy8969 421 AEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKI 460 (1230)
Q Consensus 421 ~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~ 460 (1230)
+++.|. .-.+...+..+..++... ....+||||++.+.
T Consensus 229 a~~lgv-pv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~ 266 (388)
T PRK12723 229 GDIMGI-PVKAIESFKDLKEEITQS-KDFDLVLVDTIGKS 266 (388)
T ss_pred hhcCCc-ceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCC
Confidence 222222 112333445565556554 34679999998875
No 273
>KOG0477|consensus
Probab=98.22 E-value=5e-06 Score=98.96 Aligned_cols=156 Identities=22% Similarity=0.324 Sum_probs=88.3
Q ss_pred cccccChHHHHHHHHHHHHHhhhcC-----CCCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecC----CcchhHH
Q psy8969 353 DDDHYGMEDVKKRILEFIAVSQLKG-----TTQG-KILCFYGPPGVGKTSIAKSIARALNREYFRFSVG----GMSDVAE 422 (1230)
Q Consensus 353 ~~d~~G~~~vK~~i~e~l~~~~~~~-----~~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~----~~~d~~~ 422 (1230)
--.+||+++||..|-=.|.-...++ ..+| -.+||.|-|||||+-+.|-+++...|..+.--.| |++-...
T Consensus 448 aPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~ 527 (854)
T KOG0477|consen 448 APSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVR 527 (854)
T ss_pred CchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEe
Confidence 3469999999997754442211111 1222 3499999999999999999999998876653322 2221000
Q ss_pred HhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCc-cccCCceEEE
Q psy8969 423 IKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDV-PVDLSRVLFI 501 (1230)
Q Consensus 423 i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~-~~d~s~v~~I 501 (1230)
-.-..+.|.=+. |. .......|-||||+||++...+.....| ++ |+.--+-.. ++ ..=..++.+|
T Consensus 528 KdPvtrEWTLEa-GA------LVLADkGvClIDEFDKMndqDRtSIHEA----ME--QQSISISKA-GIVtsLqArctvI 593 (854)
T KOG0477|consen 528 KDPVTREWTLEA-GA------LVLADKGVCLIDEFDKMNDQDRTSIHEA----ME--QQSISISKA-GIVTSLQARCTVI 593 (854)
T ss_pred eCCccceeeecc-Ce------EEEccCceEEeehhhhhcccccchHHHH----HH--hcchhhhhh-hHHHHHHhhhhhh
Confidence 000122332111 11 1223456999999999975433333333 32 222100000 00 0011478899
Q ss_pred EecCCCC-------------CCCHhhhcccceee
Q psy8969 502 CTANVID-------------TIPEPLRDRMEMID 522 (1230)
Q Consensus 502 ~TaN~~~-------------~I~~~L~~R~~~i~ 522 (1230)
+|||+.. .+.+|+++||+++-
T Consensus 594 AAanPigGRY~~s~tFaqNV~ltePIlSRFDiLc 627 (854)
T KOG0477|consen 594 AAANPIGGRYNPSLTFAQNVDLTEPILSRFDILC 627 (854)
T ss_pred eecCCCCCccCCccchhhccccccchhhhcceee
Confidence 9999732 67899999999753
No 274
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.22 E-value=5.4e-06 Score=95.56 Aligned_cols=91 Identities=23% Similarity=0.322 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhccccccccCc
Q psy8969 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGAMP 435 (1230)
Q Consensus 359 ~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~ 435 (1230)
...+.+...+|+.... ....+++|+|+||||||||.||.+||+.+ |.+...+.+..+. .++... + +.
T Consensus 136 ~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~--~~lk~~---~-~~-- 205 (306)
T PRK08939 136 RLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI--RELKNS---I-SD-- 205 (306)
T ss_pred HHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH--HHHHHH---H-hc--
Confidence 3344455566664221 12345789999999999999999999998 5555555543221 122211 1 11
Q ss_pred hhHHHHHHhhcCCCCEEEEeccccc
Q psy8969 436 GKVIQCMKKTKTENPLVLIDEVDKI 460 (1230)
Q Consensus 436 g~i~~~~~~~~~~~pvillDEIDk~ 460 (1230)
+.+.+.+.. -...+|++||||..-
T Consensus 206 ~~~~~~l~~-l~~~dlLiIDDiG~e 229 (306)
T PRK08939 206 GSVKEKIDA-VKEAPVLMLDDIGAE 229 (306)
T ss_pred CcHHHHHHH-hcCCCEEEEecCCCc
Confidence 112222222 235789999999753
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.20 E-value=9.2e-06 Score=103.77 Aligned_cols=143 Identities=23% Similarity=0.339 Sum_probs=115.4
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccccc-------CchhHHHHHHhhcCCCCEEEE
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA-------MPGKVIQCMKKTKTENPLVLI 454 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~-------~~g~i~~~~~~~~~~~pvill 454 (1230)
-+||+.||..+||||+.+-+|+.+|.+|+||+--.-+|..+..| +|+.. .+|-++.+++ +.--|+|
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiG---TyvTdd~G~lsFkEGvLVeAlR----~GyWIVL 961 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIG---TYVTDDDGSLSFKEGVLVEALR----RGYWIVL 961 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhh---ceeecCCCceeeehhHHHHHHh----cCcEEEe
Confidence 35889999999999999999999999999999888889888777 45533 3466666665 3457999
Q ss_pred ecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC------CCCHhhhcccceeecCCCCH
Q psy8969 455 DEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID------TIPEPLRDRMEMIDVSGYVA 528 (1230)
Q Consensus 455 DEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~------~I~~~L~~R~~~i~~~~~~~ 528 (1230)
||..-+ ..|...||-.+||... .-|+..-.++-..-.++++.+|-|++. .+..|+|+||-.+.+..-+.
T Consensus 962 DELNLA----pTDVLEaLNRLLDDNR-elfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipe 1036 (4600)
T COG5271 962 DELNLA----PTDVLEALNRLLDDNR-ELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPE 1036 (4600)
T ss_pred eccccC----cHHHHHHHHHhhcccc-ceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcH
Confidence 998754 4577888889998743 457777777777778899999999875 67899999999999998888
Q ss_pred HHHHHHHH
Q psy8969 529 EEKVAIAA 536 (1230)
Q Consensus 529 ~e~~~i~~ 536 (1230)
.|...|+.
T Consensus 1037 dEle~ILh 1044 (4600)
T COG5271 1037 DELEEILH 1044 (4600)
T ss_pred HHHHHHHh
Confidence 88877764
No 276
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.18 E-value=3.3e-06 Score=83.56 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=55.0
Q ss_pred cccHHHHhhhhcccccChHHHHHHHHHHHHHhhhc-CCCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 342 NLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLK-GTTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 342 ~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~-~~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..|++..++.|++.+|||.-|++.|+..|.....+ ...+|-+|-|.||||||||.+++.||+.|
T Consensus 13 ~~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 13 KYNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999999999988654443 34566677799999999999999999995
No 277
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.16 E-value=2.8e-05 Score=94.45 Aligned_cols=188 Identities=17% Similarity=0.332 Sum_probs=112.0
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchh---HHHhhccccc-cccC---chhHHHHHHhhcCCC
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDV---AEIKGHRRTY-VGAM---PGKVIQCMKKTKTEN 449 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~---~~i~g~~~~~-~g~~---~g~i~~~~~~~~~~~ 449 (1230)
....++++|.+|+||+++|++|.... +.||+.++++.+.+. .++.|+.... .|+. +|.+ ....+
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~------~~a~~ 234 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF------VEADG 234 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCce------eECCC
Confidence 34568899999999999999997765 468999999877642 2344443221 1111 2222 23356
Q ss_pred CEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-------CCCCHhhhcccceee
Q psy8969 450 PLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------DTIPEPLRDRMEMID 522 (1230)
Q Consensus 450 pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------~~I~~~L~~R~~~i~ 522 (1230)
.+|||||||.+.. +....|+..|+...... .......+ .++-+|+||+.. ..+.+.|..|+..+.
T Consensus 235 gtl~ldei~~l~~----~~q~~l~~~l~~~~~~~-~~~~~~~~---~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~ 306 (441)
T PRK10365 235 GTLFLDEIGDISP----MMQVRLLRAIQEREVQR-VGSNQTIS---VDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVA 306 (441)
T ss_pred CEEEEeccccCCH----HHHHHHHHHHccCcEEe-CCCCceee---eceEEEEeCCCCHHHHHHcCCchHHHHHHhccce
Confidence 7999999999853 34556666665422100 00000111 245677666543 245666677776544
Q ss_pred c--CCCCH--HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 523 V--SGYVA--EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 523 ~--~~~~~--~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
+ +++-. +|...++..++ .+...+.+ .....++++++..|. .|..-+++|.|++.|+.++
T Consensus 307 i~~ppLreR~~Di~~l~~~~l-~~~~~~~~--~~~~~~~~~a~~~L~-~~~wpgN~reL~~~~~~~~ 369 (441)
T PRK10365 307 IEVPSLRQRREDIPLLAGHFL-QRFAERNR--KAVKGFTPQAMDLLI-HYDWPGNIRELENAVERAV 369 (441)
T ss_pred ecCCChhhcchhHHHHHHHHH-HHHHHHhC--CCCCCcCHHHHHHHH-hCCCCCHHHHHHHHHHHHH
Confidence 4 43332 34455554443 44433333 233458899988775 6667889999999888754
No 278
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.15 E-value=1.4e-06 Score=92.81 Aligned_cols=71 Identities=27% Similarity=0.488 Sum_probs=42.3
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEec
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDE 456 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDE 456 (1230)
.+..|+|+||||||||.||-+||+++ |.+...++...+.+ ++.. .+.......+++.+. ..++++|||
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~--~l~~---~~~~~~~~~~~~~l~----~~dlLilDD 116 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLD--ELKQ---SRSDGSYEELLKRLK----RVDLLILDD 116 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH--HHHC---CHCCTTHCHHHHHHH----TSSCEEEET
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceec--cccc---cccccchhhhcCccc----cccEecccc
Confidence 46789999999999999999999865 55555555433333 2322 222212223333332 458999999
Q ss_pred ccc
Q psy8969 457 VDK 459 (1230)
Q Consensus 457 IDk 459 (1230)
+..
T Consensus 117 lG~ 119 (178)
T PF01695_consen 117 LGY 119 (178)
T ss_dssp CTS
T ss_pred cce
Confidence 864
No 279
>PHA00616 hypothetical protein
Probab=98.11 E-value=4.8e-07 Score=72.11 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=18.9
Q ss_pred CccCCCCCCCCCCchhhhccccccCCCCcccC
Q psy8969 1136 NNVCPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167 (1230)
Q Consensus 1136 py~C~~CgK~F~s~s~Lk~H~R~HTGEKPykC 1167 (1230)
||+|..||+.|..+++|.+|++.|+|++||.|
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~ 32 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTL 32 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccce
Confidence 35566666666666666666665666655555
No 280
>KOG0741|consensus
Probab=98.10 E-value=1.9e-05 Score=92.79 Aligned_cols=69 Identities=22% Similarity=0.442 Sum_probs=49.2
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe----cCCcchhHHHhhccccccccCchhHHHHHHhh-cCCCCEEEEe
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFS----VGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKT-KTENPLVLID 455 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~----~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~-~~~~pvillD 455 (1230)
-..+||.||||+|||+||-.||...+-||+++- +.|+++.+... .|...|..| ++.-.||++|
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~------------~i~k~F~DAYkS~lsiivvD 605 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCA------------HIKKIFEDAYKSPLSIIVVD 605 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHH------------HHHHHHHHhhcCcceEEEEc
Confidence 356899999999999999999999999999975 33444433321 223333333 3334599999
Q ss_pred cccccC
Q psy8969 456 EVDKIG 461 (1230)
Q Consensus 456 EIDk~~ 461 (1230)
+|+++.
T Consensus 606 diErLi 611 (744)
T KOG0741|consen 606 DIERLL 611 (744)
T ss_pred chhhhh
Confidence 999874
No 281
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.08 E-value=3.7e-06 Score=84.07 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=45.9
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHh--------CCCeEEEecCCcchhHHHhhccccccc------cCc----hhHHHH
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARAL--------NREYFRFSVGGMSDVAEIKGHRRTYVG------AMP----GKVIQC 441 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l--------~~~~~~~~~~~~~d~~~i~g~~~~~~g------~~~----g~i~~~ 441 (1230)
.+..++++||||+|||++++.+++.+ ..+++.+.+....+...+...--..+| ..+ ..+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34678899999999999999999998 677777776544332232111101111 112 233333
Q ss_pred HHhhcCCCCEEEEecccccC
Q psy8969 442 MKKTKTENPLVLIDEVDKIG 461 (1230)
Q Consensus 442 ~~~~~~~~pvillDEIDk~~ 461 (1230)
+..... .+|+|||+|.+.
T Consensus 83 l~~~~~--~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDRRRV--VLLVIDEADHLF 100 (131)
T ss_dssp HHHCTE--EEEEEETTHHHH
T ss_pred HHhcCC--eEEEEeChHhcC
Confidence 333322 488899999873
No 282
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.07 E-value=8.1e-05 Score=85.16 Aligned_cols=132 Identities=23% Similarity=0.362 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChH
Q psy8969 281 AIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGME 360 (1230)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~ 360 (1230)
.+++++.++|.+.++++++.+.+.+++... . +...+ ..
T Consensus 134 ~~l~~l~~~L~~~gv~~~la~~L~~~l~~~--~------------------------------~~~~~----------~~ 171 (282)
T TIGR03499 134 PEGAKLLERLLRAGVSPELARELLEKLPER--A------------------------------DAEDA----------WR 171 (282)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHhhcc--C------------------------------CHHHH----------HH
Confidence 356789999999999999999999988621 0 00000 12
Q ss_pred HHHHHHHHHHHHhhhcC--CCCCceEEEeCCCCCCchHHHHHHHHHh----C-CCeEEEecCCcc----h----hHHHhh
Q psy8969 361 DVKKRILEFIAVSQLKG--TTQGKILCFYGPPGVGKTSIAKSIARAL----N-REYFRFSVGGMS----D----VAEIKG 425 (1230)
Q Consensus 361 ~vK~~i~e~l~~~~~~~--~~~~~~llL~GPPG~GKTslak~iA~~l----~-~~~~~~~~~~~~----d----~~~i~g 425 (1230)
.+.+.|.+.+....... ..++.+++|+||+|+||||++..||..+ | .....++....+ + .+++.|
T Consensus 172 ~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~ 251 (282)
T TIGR03499 172 WLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG 251 (282)
T ss_pred HHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC
Confidence 23333333332111111 2357799999999999999999998876 3 343344432211 0 111111
Q ss_pred ccccccccCchhHHHHHHhhcCCCCEEEEec
Q psy8969 426 HRRTYVGAMPGKVIQCMKKTKTENPLVLIDE 456 (1230)
Q Consensus 426 ~~~~~~g~~~g~i~~~~~~~~~~~pvillDE 456 (1230)
.. .++...+..+.+++.... ...+||||.
T Consensus 252 ~p-~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 252 VP-VKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred Cc-eeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 11 122334556666666553 357888885
No 283
>PRK09183 transposase/IS protein; Provisional
Probab=98.07 E-value=8.4e-06 Score=91.98 Aligned_cols=90 Identities=16% Similarity=0.275 Sum_probs=51.9
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEe
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLID 455 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillD 455 (1230)
..+..++|+||||||||+||.+|+..+ |.....++...+.+ .+... . ..+.+...+.......++++||
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~--~l~~a---~---~~~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLL--QLSTA---Q---RQGRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHH--HHHHH---H---HCCcHHHHHHHHhcCCCEEEEc
Confidence 456789999999999999999998764 44443344322221 11111 0 1122333444333456799999
Q ss_pred cccccCCCCCCChhhHHHhhcCh
Q psy8969 456 EVDKIGKGYSGDPASALLEMLDP 478 (1230)
Q Consensus 456 EIDk~~~~~~~~~~~all~~ld~ 478 (1230)
|++.+..+ .+..+.|+++++.
T Consensus 172 dlg~~~~~--~~~~~~lf~li~~ 192 (259)
T PRK09183 172 EIGYLPFS--QEEANLFFQVIAK 192 (259)
T ss_pred ccccCCCC--hHHHHHHHHHHHH
Confidence 99865321 1233456666654
No 284
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.4e-05 Score=98.61 Aligned_cols=144 Identities=24% Similarity=0.344 Sum_probs=93.4
Q ss_pred hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCC-EEE
Q psy8969 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVL 453 (1230)
Q Consensus 375 ~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~p-vil 453 (1230)
..+...+++++++||||+|||++++++|.. +..+ +...+-.+ -.+|+|...-.....+..+....| +++
T Consensus 12 ~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~--~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 12 KLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEF--LSINGPEI-------LSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred HhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcc--cccCcchh-------hhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 345677888999999999999999999999 6665 33322222 125778888888888888888776 999
Q ss_pred EecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhc--ccce-eecCCCCHHH
Q psy8969 454 IDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRD--RMEM-IDVSGYVAEE 530 (1230)
Q Consensus 454 lDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~--R~~~-i~~~~~~~~e 530 (1230)
+||+|.+...+..+....... ....++....++. ... ++++..+|.+..++++++. |++. +.+.......
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~-----v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (494)
T COG0464 82 IDEIDALAPKRSSDQGEVERR-----VVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAG 154 (494)
T ss_pred echhhhcccCccccccchhhH-----HHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHH
Confidence 999999976544311111101 1111111112222 445 8888899999999999885 6664 3444434433
Q ss_pred HHHHH
Q psy8969 531 KVAIA 535 (1230)
Q Consensus 531 ~~~i~ 535 (1230)
...|.
T Consensus 155 ~~ei~ 159 (494)
T COG0464 155 RLEIL 159 (494)
T ss_pred HHHHH
Confidence 33444
No 285
>KOG3993|consensus
Probab=98.03 E-value=2.6e-06 Score=96.82 Aligned_cols=113 Identities=20% Similarity=0.379 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCCccChhHHHhhhhcccCCCceecCCCccCccccChhhHHHHHhhccCCCCcc-ccccccccccCCchhH
Q psy8969 791 PFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYV-CQVRDCQKRFTEYSSL 869 (1230)
Q Consensus 791 p~~C~~~~C~k~F~~~~~L~~H~r~H~gekpy~C~~~~Cgk~F~~~s~L~~H~r~Htgekpy~-C~~~~C~k~F~~~~~L 869 (1230)
.|.|.. |...|.....|-+|.-.-.-..-|+|.+ |+|.|....||..|.|.|--...-. -..+.=.++-.+...-
T Consensus 267 dyiCqL--CK~kYeD~F~LAQHrC~RIV~vEYrCPE--C~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~ 342 (500)
T KOG3993|consen 267 DYICQL--CKEKYEDAFALAQHRCPRIVHVEYRCPE--CDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV 342 (500)
T ss_pred HHHHHH--HHHhhhhHHHHhhccCCeeEEeeecCCc--ccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence 389998 9999999999999964322235699999 9999999999999999995321000 0000000010111111
Q ss_pred hhhhcc--ccCCCCccCCCCCcccCChhhHHhHHhhhcCC
Q psy8969 870 YKHTLV--HSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907 (1230)
Q Consensus 870 ~~H~~~--H~~ekpy~C~~Cgk~F~~~~~L~~H~k~hh~~ 907 (1230)
+.-.+. -+.+--|.|.+|+|+|++...|++|+.+||..
T Consensus 343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence 111110 01223699999999999999999999999864
No 286
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.02 E-value=9.2e-06 Score=82.73 Aligned_cols=59 Identities=17% Similarity=0.481 Sum_probs=39.4
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCC---CeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNR---EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEV 457 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~---~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEI 457 (1230)
...|+|+|+|||||+++|++|....+. +|+.+++.. .+. +.+.. ..+..++|+||
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-----------------~~~---~~l~~--a~~gtL~l~~i 78 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-----------------LPA---ELLEQ--AKGGTLYLKNI 78 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-----------------TCH---HHHHH--CTTSEEEEECG
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-----------------CcH---HHHHH--cCCCEEEECCh
Confidence 456889999999999999999998765 343333221 222 22222 26678999999
Q ss_pred cccC
Q psy8969 458 DKIG 461 (1230)
Q Consensus 458 Dk~~ 461 (1230)
|.+.
T Consensus 79 ~~L~ 82 (138)
T PF14532_consen 79 DRLS 82 (138)
T ss_dssp CCS-
T ss_pred HHCC
Confidence 9874
No 287
>KOG0480|consensus
Probab=98.00 E-value=5.4e-06 Score=99.32 Aligned_cols=173 Identities=23% Similarity=0.346 Sum_probs=99.5
Q ss_pred hcccccChHHHHHHHHHHH--HHhhhcC---CCCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEE----ecCCcchhH
Q psy8969 352 LDDDHYGMEDVKKRILEFI--AVSQLKG---TTQG-KILCFYGPPGVGKTSIAKSIARALNREYFRF----SVGGMSDVA 421 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l--~~~~~~~---~~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~----~~~~~~d~~ 421 (1230)
|=..+||.+.||.-|+=.| .+.+..+ ..+| ..+|++|-||+||+-+-++.+..+-|..+.- +.+|++-.-
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAV 422 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEE
Confidence 5567999999999886544 1222222 1122 4599999999999999999999887765421 122222100
Q ss_pred HHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEE
Q psy8969 422 EIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFI 501 (1230)
Q Consensus 422 ~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I 501 (1230)
--.+...-|+ +++=+..-..|.|--|||+|||.. ....|++|-++. |.-..-..-+...++ .+.-+|
T Consensus 423 vkD~esgdf~-------iEAGALmLADnGICCIDEFDKMd~----~dqvAihEAMEQ-QtISIaKAGv~aTLn-ARtSIl 489 (764)
T KOG0480|consen 423 VKDEESGDFT-------IEAGALMLADNGICCIDEFDKMDV----KDQVAIHEAMEQ-QTISIAKAGVVATLN-ARTSIL 489 (764)
T ss_pred EecCCCCcee-------eecCcEEEccCceEEechhcccCh----HhHHHHHHHHHh-heehheecceEEeec-chhhhh
Confidence 0000011121 111112334678999999999843 136788888764 211111111111122 256688
Q ss_pred EecCCCC-------------CCCHhhhccccee--ecCCCCHHHHHHHHHH
Q psy8969 502 CTANVID-------------TIPEPLRDRMEMI--DVSGYVAEEKVAIAAQ 537 (1230)
Q Consensus 502 ~TaN~~~-------------~I~~~L~~R~~~i--~~~~~~~~e~~~i~~~ 537 (1230)
++||+.. .+++||+|||+.+ -+....+..=..|+..
T Consensus 490 AAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~h 540 (764)
T KOG0480|consen 490 AAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARH 540 (764)
T ss_pred hhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHH
Confidence 9999765 6789999999964 4444444444455544
No 288
>PHA02624 large T antigen; Provisional
Probab=98.00 E-value=0.00013 Score=89.07 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=72.1
Q ss_pred hhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEE
Q psy8969 374 QLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL 453 (1230)
Q Consensus 374 ~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvil 453 (1230)
.+.+.++...++|+||||+|||+++.+|++.||...+.++. -.+-+ .-|.|-. ...-+++
T Consensus 424 ~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNs--Pt~ks------~FwL~pl------------~D~~~~l 483 (647)
T PHA02624 424 IVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNC--PPDKL------NFELGCA------------IDQFMVV 483 (647)
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeC--Ccchh------HHHhhhh------------hhceEEE
Confidence 35677778899999999999999999999999654444432 11200 1233311 1345889
Q ss_pred EecccccCCC----CCCChhh---HHHhhcChhhhhhhhhhccCccccCCc--------eEEEEecCCCCCCCHhhhccc
Q psy8969 454 IDEVDKIGKG----YSGDPAS---ALLEMLDPEQNANFLDHYLDVPVDLSR--------VLFICTANVIDTIPEPLRDRM 518 (1230)
Q Consensus 454 lDEIDk~~~~----~~~~~~~---all~~ld~~q~~~f~d~~~~~~~d~s~--------v~~I~TaN~~~~I~~~L~~R~ 518 (1230)
||.+..-.-. ..|.-.+ -|.. ++|.+..+.+|..+ --.|.|+|.+. ||..|.-||
T Consensus 484 ~dD~t~~~~~~~~Lp~G~~~dNl~~lRn---------~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~-iP~T~~~Rf 553 (647)
T PHA02624 484 FEDVKGQPADNKDLPSGQGMNNLDNLRD---------YLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYL-IPQTVKARF 553 (647)
T ss_pred eeeccccccccccCCcccccchhhHHHh---------hcCCCCccccchhccCchhccCCCeEEeecCcc-cchhHHHHH
Confidence 9988643211 1122221 1222 23333223333321 22568899875 999999999
Q ss_pred ceeecCCCCH
Q psy8969 519 EMIDVSGYVA 528 (1230)
Q Consensus 519 ~~i~~~~~~~ 528 (1230)
..+..+.+..
T Consensus 554 ~~~~~F~~k~ 563 (647)
T PHA02624 554 AKVLDFKPKP 563 (647)
T ss_pred HHhccccccH
Confidence 8554444433
No 289
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.00 E-value=0.00016 Score=82.03 Aligned_cols=171 Identities=17% Similarity=0.216 Sum_probs=95.6
Q ss_pred HHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC---------CCeEEEecCCc
Q psy8969 347 QAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN---------REYFRFSVGGM 417 (1230)
Q Consensus 347 ~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~---------~~~~~~~~~~~ 417 (1230)
+...+..+--+|...+++.+-..-.........+.+.+||+|++|.|||++++-.++.-. .|.+.+.+-..
T Consensus 27 RI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 27 RIAYIRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred HHHHHhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 444455566777777777554443334556677788999999999999999999987643 35555655444
Q ss_pred chhHHHhhcccccccc----------CchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhh
Q psy8969 418 SDVAEIKGHRRTYVGA----------MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDH 487 (1230)
Q Consensus 418 ~d~~~i~g~~~~~~g~----------~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~ 487 (1230)
.|+..+...--...|+ ....+...|+..+. -+|+||||+.+..+.. .-...+|.+|- |+-+
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~v--rmLIIDE~H~lLaGs~-~~qr~~Ln~LK------~L~N 177 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGV--RMLIIDEFHNLLAGSY-RKQREFLNALK------FLGN 177 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCC--cEEEeechHHHhcccH-HHHHHHHHHHH------HHhh
Confidence 4443322111111111 12223344443333 3999999998754321 11223332221 1111
Q ss_pred ccCccccCCceEEEEecCC--CCCCCHhhhcccceeecCCCCHHHH
Q psy8969 488 YLDVPVDLSRVLFICTANV--IDTIPEPLRDRMEMIDVSGYVAEEK 531 (1230)
Q Consensus 488 ~~~~~~d~s~v~~I~TaN~--~~~I~~~L~~R~~~i~~~~~~~~e~ 531 (1230)
.... .++.+.|-.- .-.-|+.|-+||+.+.++.+...+-
T Consensus 178 ----eL~i-piV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~e 218 (302)
T PF05621_consen 178 ----ELQI-PIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEE 218 (302)
T ss_pred ----ccCC-CeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcH
Confidence 1222 1233333222 2244789999999999998876443
No 290
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.98 E-value=8.1e-05 Score=80.52 Aligned_cols=180 Identities=19% Similarity=0.314 Sum_probs=107.5
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE---EecCCcchhHHHhhccccc
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR---FSVGGMSDVAEIKGHRRTY 430 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~---~~~~~~~d~~~i~g~~~~~ 430 (1230)
.++.|++..|+.+.+.... -..| .+.-.+||+|--|+||+||+||+-.+++....| ++-.++.+...
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~-F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~-------- 129 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQ-FAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPD-------- 129 (287)
T ss_pred HHHhCchHHHHHHHHHHHH-HHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHH--------
Confidence 4789999999999876532 1222 233458899999999999999999988765554 33222222211
Q ss_pred cccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCC
Q psy8969 431 VGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTI 510 (1230)
Q Consensus 431 ~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I 510 (1230)
|+..++ +....=|||+|.. +-+...+..-+|-.+||.. +.---.||+|-+|+|+-+-|
T Consensus 130 -------l~~~Lr-~~~~kFIlFcDDL---SFe~gd~~yK~LKs~LeG~-----------ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 130 -------LVELLR-ARPEKFILFCDDL---SFEEGDDAYKALKSALEGG-----------VEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred -------HHHHHh-cCCceEEEEecCC---CCCCCchHHHHHHHHhcCC-----------cccCCCeEEEEEecCCcccc
Confidence 112221 1122236777764 2222233345555555542 22234699999999999999
Q ss_pred CHhhhccccee--ecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhH
Q psy8969 511 PEPLRDRMEMI--DVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 511 ~~~L~~R~~~i--~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gv 574 (1230)
|+-.-++-..- .-++-+.+||+.+-. ..||-......+.+.--.+|+.|....|+
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSD---------RFGLwL~F~~~~Q~~YL~~V~~~a~~~~l 244 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSD---------RFGLWLSFYPCDQDEYLKIVDHYAKHFGL 244 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhh---------hcceeecccCCCHHHHHHHHHHHHHHcCC
Confidence 88888776532 122334566655433 34555555556666666677777765554
No 291
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.98 E-value=0.00023 Score=85.78 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccCh
Q psy8969 280 DAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGM 359 (1230)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~ 359 (1230)
.....++.++|....+++++.+.+...+..-. .. .. . ...
T Consensus 160 ~~~~~~~~~~L~~~gv~~~~~~~l~~~~~~~~--~~----~~-----------------------~-----------~~~ 199 (424)
T PRK05703 160 PPEFAELYKRLKRSGLSPEIAEKLLKLLLEHM--PP----RE-----------------------R-----------TAW 199 (424)
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh--hh----hH-----------------------H-----------HHH
Confidence 34566788999999999999999988775311 00 00 0 001
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC-----CCeEEEecCCcc--------hhHHHhhc
Q psy8969 360 EDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN-----REYFRFSVGGMS--------DVAEIKGH 426 (1230)
Q Consensus 360 ~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~-----~~~~~~~~~~~~--------d~~~i~g~ 426 (1230)
..+++.|.+.+..........+.+++|+||+||||||++..||..+- .....++....+ ..+++.|.
T Consensus 200 ~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~v 279 (424)
T PRK05703 200 RYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGI 279 (424)
T ss_pred HHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCC
Confidence 22333333333221111123467999999999999999988877542 333444433211 11112221
Q ss_pred cccccccCchhHHHHHHhhcCCCCEEEEecccc
Q psy8969 427 RRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDK 459 (1230)
Q Consensus 427 ~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk 459 (1230)
. .++...+..+...+.... ...+||||..-.
T Consensus 280 p-~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~ 310 (424)
T PRK05703 280 P-VEVVYDPKELAKALEQLR-DCDVILIDTAGR 310 (424)
T ss_pred c-eEccCCHHhHHHHHHHhC-CCCEEEEeCCCC
Confidence 1 122334556666665543 357999998643
No 292
>PF05729 NACHT: NACHT domain
Probab=97.96 E-value=3.8e-05 Score=79.57 Aligned_cols=147 Identities=18% Similarity=0.320 Sum_probs=71.2
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCe---------EEEecCCcchhHH---HhhccccccccCchhHHHHHHh-h-cC
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREY---------FRFSVGGMSDVAE---IKGHRRTYVGAMPGKVIQCMKK-T-KT 447 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~---------~~~~~~~~~d~~~---i~g~~~~~~g~~~g~i~~~~~~-~-~~ 447 (1230)
+.|+++|+||+|||++++.++..+.... +.+.++...+... +...-........+.+...+.. . ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 3688999999999999999998764321 2233333333211 1000000011111112211111 1 12
Q ss_pred CCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCC--CCHhhhcccceeecCC
Q psy8969 448 ENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDT--IPEPLRDRMEMIDVSG 525 (1230)
Q Consensus 448 ~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~--I~~~L~~R~~~i~~~~ 525 (1230)
..-+|+||=+|.+...........+.+ ++..++... -..++-+|.|+.+... + ...+.....+.+.+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~---------~l~~l~~~~-~~~~~~liit~r~~~~~~~-~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLD---------LLSQLLPQA-LPPGVKLIITSRPRAFPDL-RRRLKQAQILELEP 149 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHH---------HHHHHhhhc-cCCCCeEEEEEcCChHHHH-HHhcCCCcEEEECC
Confidence 233677899998864221100011111 111122110 1234455555543322 2 22233346789999
Q ss_pred CCHHHHHHHHHHhh
Q psy8969 526 YVAEEKVAIAAQYL 539 (1230)
Q Consensus 526 ~~~~e~~~i~~~~l 539 (1230)
++.++....+++++
T Consensus 150 ~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 150 FSEEDIKQYLRKYF 163 (166)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999998888775
No 293
>KOG3993|consensus
Probab=97.94 E-value=1.7e-06 Score=98.32 Aligned_cols=138 Identities=20% Similarity=0.336 Sum_probs=96.1
Q ss_pred hhhHhhccceecccchhhhhhcccccCC---CCCCCCCCCCCCCCccChhHHHhhhhccc--------C-----------
Q psy8969 761 PEYIREGLNVHFVSEWRQVYDLVFEHTS---ERPFPCPVLGCDRSFTTSNIRKVHIRTHT--------G----------- 818 (1230)
Q Consensus 761 Pe~vr~~l~i~fvs~~~eVl~ia~~ht~---ekp~~C~~~~C~k~F~~~~~L~~H~r~H~--------g----------- 818 (1230)
-++|+.-|+..|. ++|.++.+... .-.|+|+. |+|.|+...+|-.|.|-|. +
T Consensus 266 GdyiCqLCK~kYe----D~F~LAQHrC~RIV~vEYrCPE--C~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r 339 (500)
T KOG3993|consen 266 GDYICQLCKEKYE----DAFALAQHRCPRIVHVEYRCPE--CDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR 339 (500)
T ss_pred HHHHHHHHHHhhh----hHHHHhhccCCeeEEeeecCCc--ccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence 5788888877654 45555432111 12599997 9999999999999998772 1
Q ss_pred --------------CCceecCCCccCccccChhhHHHHHhhccCCC------C-----------ccccc-----------
Q psy8969 819 --------------EKPYVCGEAGCDKSFASATNYKNHMRIHSGEK------P-----------YVCQV----------- 856 (1230)
Q Consensus 819 --------------ekpy~C~~~~Cgk~F~~~s~L~~H~r~Htgek------p-----------y~C~~----------- 856 (1230)
+..|.|.. |+|.|.....|+.|+.+|...- | +-|+.
T Consensus 340 ae~~ea~rsg~dss~gi~~C~~--C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~ 417 (500)
T KOG3993|consen 340 AEVQEAERSGDDSSSGIFSCHT--CGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSH 417 (500)
T ss_pred hhhhhccccCCcccCceeecHH--hhhhhHHHHHHHHhHHhhhccccchhcccCcchhhccccccccccccccccccccc
Confidence 22599999 9999999999999998886310 0 11211
Q ss_pred ----------------cccccccCCchhHhhhhccccCCCCccCCCCCcccCChhhHHhHHhhhcC
Q psy8969 857 ----------------RDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHR 906 (1230)
Q Consensus 857 ----------------~~C~k~F~~~~~L~~H~~~H~~ekpy~C~~Cgk~F~~~~~L~~H~k~hh~ 906 (1230)
+.|+..|+.+..--.|.+.-.-+.-|.|.+|.-+|....+|.+|+...|.
T Consensus 418 g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp 483 (500)
T KOG3993|consen 418 GDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP 483 (500)
T ss_pred ccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence 11444455444444444444445679999999999999999999877663
No 294
>PHA00732 hypothetical protein
Probab=97.94 E-value=4.5e-06 Score=76.29 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=41.1
Q ss_pred CccCCCCCCCCCCchhhhcccc-ccCCCCcccCCcccccccccCchhhhhhcccccCCC
Q psy8969 1136 NNVCPECKKTFSSAHHMKVHLR-IHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193 (1230)
Q Consensus 1136 py~C~~CgK~F~s~s~Lk~H~R-~HTGEKPykCpve~CgKsF~~ks~Lk~H~RtHTGEK 1193 (1230)
||.|+.||+.|.+.++|++|++ .|+ ++.|+ .|+++|. .|.+|++++..-.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~--~CgKsF~---~l~~H~~~~~~~~ 51 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCP--VCNKSYR---RLNQHFYSQYDIE 51 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccC--CCCCEeC---ChhhhhcccCCcc
Confidence 5789999999999999999998 466 46895 6999998 5889998877643
No 295
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.94 E-value=3.1e-05 Score=84.78 Aligned_cols=146 Identities=18% Similarity=0.288 Sum_probs=68.8
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeE---EEe-cCCcchhHHHhhc-------------ccccc-----------
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYF---RFS-VGGMSDVAEIKGH-------------RRTYV----------- 431 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~---~~~-~~~~~d~~~i~g~-------------~~~~~----------- 431 (1230)
....++++||.|+|||+|.+.+...+...-. .+. ..+... ..+... ....+
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADELSEALGISIPSITLEKISKD 97 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECT
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhc
Confidence 3567889999999999999999999843211 111 122111 110000 00000
Q ss_pred --ccCchhHHHHHHhhcC--CCCEEEEecccccC-CCC-CCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecC
Q psy8969 432 --GAMPGKVIQCMKKTKT--ENPLVLIDEVDKIG-KGY-SGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN 505 (1230)
Q Consensus 432 --g~~~g~i~~~~~~~~~--~~pvillDEIDk~~-~~~-~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN 505 (1230)
......+...+..... ...||+|||+|.+. ... ..+....|..+++. .....++.+|+++.
T Consensus 98 ~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~v~~~S 164 (234)
T PF01637_consen 98 LSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS-------------LLSQQNVSIVITGS 164 (234)
T ss_dssp S-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----------------TTEEEEEEES
T ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh-------------ccccCCceEEEECC
Confidence 0111122222222222 23788899999987 211 11222333333322 11123444444333
Q ss_pred C------CCCCCHhhhcccceeecCCCCHHHHHHHHHHhh
Q psy8969 506 V------IDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 506 ~------~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l 539 (1230)
. ...-..++..|+..+.+.+++.+|...++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 165 SDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELF 204 (234)
T ss_dssp SHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHH
T ss_pred chHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHH
Confidence 2 234457788999999999999999988776644
No 296
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.92 E-value=2.1e-05 Score=87.00 Aligned_cols=172 Identities=19% Similarity=0.265 Sum_probs=86.1
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCC
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGK 462 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~ 462 (1230)
+-.++||+|||||.+.|.+|+.+|++++.++.....|...+ ++|...+... ..-+.|||++++..
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l------------~ril~G~~~~---GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSL------------SRILKGLAQS---GAWLCFDEFNRLSE 98 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHH------------HHHHHHHHHH---T-EEEEETCCCSSH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHH------------HHHHHHHhhc---CchhhhhhhhhhhH
Confidence 44589999999999999999999999999998877764332 2233333333 33688999999843
Q ss_pred CCCCChhhHHHhhcChhhh----hhhhhhcc--CccccCCceEEEEecCC----CCCCCHhhhcccceeecCCCCHHHHH
Q psy8969 463 GYSGDPASALLEMLDPEQN----ANFLDHYL--DVPVDLSRVLFICTANV----IDTIPEPLRDRMEMIDVSGYVAEEKV 532 (1230)
Q Consensus 463 ~~~~~~~~all~~ld~~q~----~~f~d~~~--~~~~d~s~v~~I~TaN~----~~~I~~~L~~R~~~i~~~~~~~~e~~ 532 (1230)
+..+++-+.+..-++ ..-.-.+. .+.++. ++-+.+|.|+ ...||+.|+.-|..+.+..+...
T Consensus 99 ----~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~-~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~--- 170 (231)
T PF12774_consen 99 ----EVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNP-NCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLS--- 170 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--T-T-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HH---
T ss_pred ----HHHHHHHHHHHHHHHhhcccccccccCCCEEEEcc-ceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHH---
Confidence 233443332221111 00000111 223333 3333445663 35899999999998877655443
Q ss_pred HHHHHhhcchhHHhcCCCCCCcccCHHHH--HHHHHH-----hhhhhhHHHHHHHHHH
Q psy8969 533 AIAAQYLIPQAMKESGLSPEQITLEPSAI--QVLIKN-----YCRESGVRNLQKHIEK 583 (1230)
Q Consensus 533 ~i~~~~l~~~~~~~~gl~~~~i~~~~~~~--~~li~~-----~~~e~gvR~l~~~i~~ 583 (1230)
.|+.-.| ...|+.... .+..... -.+++. --...|+|.++..+..
T Consensus 171 ~I~ei~L-----~s~GF~~a~-~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~ 222 (231)
T PF12774_consen 171 LIAEILL-----LSQGFKDAK-SLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRM 222 (231)
T ss_dssp HHHHHHH-----HCCCTSSHH-HHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHH
T ss_pred HHHHHHH-----HHcCchhHH-HHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHH
Confidence 4444433 356664311 1221111 112222 1245788888766654
No 297
>KOG1514|consensus
Probab=97.91 E-value=0.00014 Score=88.90 Aligned_cols=184 Identities=24% Similarity=0.338 Sum_probs=109.7
Q ss_pred cChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC----------CCeEEEecCCcchhHH----
Q psy8969 357 YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN----------REYFRFSVGGMSDVAE---- 422 (1230)
Q Consensus 357 ~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~----------~~~~~~~~~~~~d~~~---- 422 (1230)
-+=+.-...|..|+...... ..-|..+.+.|-||||||.+++.+-+.|. -.|+.|+.=-+....+
T Consensus 399 pcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 399 PCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred cchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 34444445555555332222 23456788999999999999999888765 2344555322223333
Q ss_pred ----HhhccccccccCchhHHHHHHh--hcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCC
Q psy8969 423 ----IKGHRRTYVGAMPGKVIQCMKK--TKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS 496 (1230)
Q Consensus 423 ----i~g~~~~~~g~~~g~i~~~~~~--~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s 496 (1230)
+.|++-+|.-++.. +.+-|.. ......||||||.|-+.. .-...|..++|.. ....+
T Consensus 478 I~~~lsg~~~~~~~al~~-L~~~f~~~k~~~~~~VvLiDElD~Lvt----r~QdVlYn~fdWp------------t~~~s 540 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEA-LNFRFTVPKPKRSTTVVLIDELDILVT----RSQDVLYNIFDWP------------TLKNS 540 (767)
T ss_pred HHHhcccCcccHHHHHHH-HHHhhccCCCCCCCEEEEeccHHHHhc----ccHHHHHHHhcCC------------cCCCC
Confidence 33444444322211 1111111 122234899999998753 2244555555432 14568
Q ss_pred ceEEEEecCCCCCCCHhhh-----ccc--ceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhh
Q psy8969 497 RVLFICTANVIDTIPEPLR-----DRM--EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYC 569 (1230)
Q Consensus 497 ~v~~I~TaN~~~~I~~~L~-----~R~--~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~ 569 (1230)
++++|+-+|..+. |+-++ +|+ ..|.|.+|+.++..+|+...|- |+ -.+..++++.+.+..+
T Consensus 541 KLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~-------~~----~~f~~~aielvarkVA 608 (767)
T KOG1514|consen 541 KLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK-------GL----DAFENKAIELVARKVA 608 (767)
T ss_pred ceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc-------ch----hhcchhHHHHHHHHHH
Confidence 9999999999874 45555 364 4689999999999888866552 22 3457788888877665
Q ss_pred h
Q psy8969 570 R 570 (1230)
Q Consensus 570 ~ 570 (1230)
.
T Consensus 609 a 609 (767)
T KOG1514|consen 609 A 609 (767)
T ss_pred h
Confidence 4
No 298
>KOG1970|consensus
Probab=97.88 E-value=0.00012 Score=87.24 Aligned_cols=39 Identities=26% Similarity=0.529 Sum_probs=34.8
Q ss_pred hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 375 ~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
..+...+++|||.||+||||||..+.||+++|..++.++
T Consensus 104 ~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 104 FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 445566789999999999999999999999999988877
No 299
>KOG0481|consensus
Probab=97.87 E-value=0.00015 Score=85.17 Aligned_cols=171 Identities=26% Similarity=0.336 Sum_probs=97.0
Q ss_pred hcccccChHHHHHHHHHHHHHhhhcCC-----CCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHH---
Q psy8969 352 LDDDHYGMEDVKKRILEFIAVSQLKGT-----TQG-KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAE--- 422 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~~~~~~~-----~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~--- 422 (1230)
+--.+||.+++|+.|.=.|--...+.. .+| -.+||.|-||+-|+-|.|.+-+.. |.-....|--++.+-
T Consensus 329 IAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs--PIaVYTSGKGSSAAGLTA 406 (729)
T KOG0481|consen 329 IAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS--PIAVYTSGKGSSAAGLTA 406 (729)
T ss_pred cCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC--ceEEEecCCCccccccee
Confidence 556799999999998766632211111 122 248999999999999999887654 332222221111111
Q ss_pred --Hh--hcccccc--ccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCc-cccC
Q psy8969 423 --IK--GHRRTYV--GAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDV-PVDL 495 (1230)
Q Consensus 423 --i~--g~~~~~~--g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~-~~d~ 495 (1230)
++ +.|.-|. |+| ....+.|+-|||+||+ +.+---|+.|-++. +.--+.. -++ .+=.
T Consensus 407 SV~RD~~tReFylEGGAM----------VLADgGVvCIDEFDKM----re~DRVAIHEAMEQ--QTISIAK-AGITT~LN 469 (729)
T KOG0481|consen 407 SVIRDPSTREFYLEGGAM----------VLADGGVVCIDEFDKM----REDDRVAIHEAMEQ--QTISIAK-AGITTTLN 469 (729)
T ss_pred eEEecCCcceEEEecceE----------EEecCCEEEeehhhcc----CchhhhHHHHHHHh--hhHHHhh-hcceeeec
Confidence 11 1111222 322 2345679999999998 33334466666653 2111111 011 1224
Q ss_pred CceEEEEecCCCC-----------CC--CHhhhccccee-ecCCCCHHHHHHHHHHhhcc
Q psy8969 496 SRVLFICTANVID-----------TI--PEPLRDRMEMI-DVSGYVAEEKVAIAAQYLIP 541 (1230)
Q Consensus 496 s~v~~I~TaN~~~-----------~I--~~~L~~R~~~i-~~~~~~~~e~~~i~~~~l~~ 541 (1230)
|+.-+.++||+.. +| -+.+|+||+.| ++..--.+++-..+.+|++.
T Consensus 470 SRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~ 529 (729)
T KOG0481|consen 470 SRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVIN 529 (729)
T ss_pred chhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhh
Confidence 7788889999653 34 38899999965 55554455554455555543
No 300
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.86 E-value=0.00014 Score=82.34 Aligned_cols=186 Identities=23% Similarity=0.327 Sum_probs=116.4
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcch---hHHHhhccccccccCchhHHHHHHhhcCCCCEEEEe
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSD---VAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLID 455 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d---~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillD 455 (1230)
..||+.|..||||-.+||+.-.+. ..||+-+++.++.| ++|+-|++.. .+...|-+ . ..+..-+|||
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg-~~gk~Gff----E--~AngGTVlLD 300 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPG-DEGKKGFF----E--QANGGTVLLD 300 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCC-CCCccchh----h--hccCCeEEee
Confidence 469999999999999999876654 46999999999986 5667777664 22233432 1 2345689999
Q ss_pred cccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-------CCCCHhhhcccceeecCCCCH
Q psy8969 456 EVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------DTIPEPLRDRMEMIDVSGYVA 528 (1230)
Q Consensus 456 EIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------~~I~~~L~~R~~~i~~~~~~~ 528 (1230)
||..++. .-...||..|.+. .|..--.+-.+- -+|-+||||... ...-..|.-|+.|..+.-++.
T Consensus 301 eIgEmSp----~lQaKLLRFL~DG---tFRRVGee~Ev~-vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpL 372 (511)
T COG3283 301 EIGEMSP----RLQAKLLRFLNDG---TFRRVGEDHEVH-VDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPL 372 (511)
T ss_pred hhhhcCH----HHHHHHHHHhcCC---ceeecCCcceEE-EEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCcc
Confidence 9998753 3456777777542 333221111111 257889988632 233344445666543333332
Q ss_pred HHH---HHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 529 EEK---VAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 529 ~e~---~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
.|. +.-+.+..+.+...+.|+. .-.++++.+..+ ..|-.-++||+|+..|...|
T Consensus 373 Rer~~di~pL~e~Fv~q~s~elg~p--~pkl~~~~~~~L-~~y~WpGNVRqL~N~iyRA~ 429 (511)
T COG3283 373 RERPQDIMPLAELFVQQFSDELGVP--RPKLAADLLTVL-TRYAWPGNVRQLKNAIYRAL 429 (511)
T ss_pred ccCcccchHHHHHHHHHHHHHhCCC--CCccCHHHHHHH-HHcCCCccHHHHHHHHHHHH
Confidence 222 2222344455566666654 345777877776 46777889999998887754
No 301
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.83 E-value=5.4e-05 Score=77.36 Aligned_cols=76 Identities=30% Similarity=0.538 Sum_probs=47.4
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcc----------------hhHHH-------hhcccccc-------c
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS----------------DVAEI-------KGHRRTYV-------G 432 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~----------------d~~~i-------~g~~~~~~-------g 432 (1230)
-|.+.||||+||||+++-||..|...=+. ++|+- |.+.- .|.++.-+ .
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~k--vgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYK--VGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCce--eeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 47799999999999999999988755222 12211 11100 00011111 1
Q ss_pred cCchhHHHHHHhhcCCCCEEEEeccccc
Q psy8969 433 AMPGKVIQCMKKTKTENPLVLIDEVDKI 460 (1230)
Q Consensus 433 ~~~g~i~~~~~~~~~~~pvillDEIDk~ 460 (1230)
...-..+.++..|....+||+||||.+|
T Consensus 85 ~le~i~~~al~rA~~~aDvIIIDEIGpM 112 (179)
T COG1618 85 GLEEIAIPALRRALEEADVIIIDEIGPM 112 (179)
T ss_pred HHHHHhHHHHHHHhhcCCEEEEecccch
Confidence 1233456677777778899999999987
No 302
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.81 E-value=5.6e-05 Score=85.21 Aligned_cols=117 Identities=13% Similarity=0.225 Sum_probs=90.8
Q ss_pred ccCCceEEE--EecCCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhh
Q psy8969 493 VDLSRVLFI--CTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCR 570 (1230)
Q Consensus 493 ~d~s~v~~I--~TaN~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~ 570 (1230)
++...|++| +|.|+...|.+||+||+.++.+.+++.++...++++.+.. +.++....+.++++++..|++. .
T Consensus 4 vE~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~----~~~~~~~~~~i~~~al~~ia~~--a 77 (300)
T PRK14700 4 VESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQ----DEVLAKHKFKIDDGLYNAMHNY--N 77 (300)
T ss_pred ccCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHh----hhccCCcCCCcCHHHHHHHHHh--c
Confidence 445678888 6779999999999999999999999999999999998743 2344445789999999999876 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCCceEechhhhhhhcCCCccccccc
Q psy8969 571 ESGVRNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRL 621 (1230)
Q Consensus 571 e~gvR~l~~~i~~i~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 621 (1230)
.+++|.....+|.++.. .... ....||.+.+++.++...+.+|+.
T Consensus 78 ~GDaR~aLN~LE~a~~~-----~~~~-~~~~it~~~~~~~~~~~~~~yDk~ 122 (300)
T PRK14700 78 EGDCRKILNLLERMFLI-----STRG-DEIYLNKELFDQAVGETSRDFHRE 122 (300)
T ss_pred CCHHHHHHHHHHHHHhh-----cccc-CCCccCHHHHHHHHhHHHhcccCC
Confidence 77788888888875521 1111 223589999999998887777654
No 303
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00027 Score=83.30 Aligned_cols=27 Identities=33% Similarity=0.674 Sum_probs=24.0
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.++.+++|+||+||||||++..||..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999764
No 304
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00047 Score=80.86 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=50.0
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEecCCcc--hhHHHhhcc-----ccccccCchhHHHHHHhhcC--
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALN---REYFRFSVGGMS--DVAEIKGHR-----RTYVGAMPGKVIQCMKKTKT-- 447 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~~~~~~--d~~~i~g~~-----~~~~g~~~g~i~~~~~~~~~-- 447 (1230)
++..|+|+||+|+||||++..||..+. .....++....+ ....+...+ .-++...|..+.+++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 457899999999999999999998763 233334432221 222222211 11224456777777776654
Q ss_pred CCCEEEEecccc
Q psy8969 448 ENPLVLIDEVDK 459 (1230)
Q Consensus 448 ~~pvillDEIDk 459 (1230)
.-++||||-.-.
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 358999997554
No 305
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.78 E-value=0.00014 Score=82.86 Aligned_cols=156 Identities=15% Similarity=0.259 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHH--hCCCe---EEEecCCcchhHHH----h---hcc
Q psy8969 360 EDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARA--LNREY---FRFSVGGMSDVAEI----K---GHR 427 (1230)
Q Consensus 360 ~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~--l~~~~---~~~~~~~~~d~~~i----~---g~~ 427 (1230)
|.-+++|.++|.... ....++.++|++|+|||+||+.+++. ....| +-+++++..+...+ . +..
T Consensus 2 e~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 344566777764222 55688999999999999999999988 55555 23444443322221 1 111
Q ss_pred -ccc-cccCchhHHHHHHhh-cCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEec
Q psy8969 428 -RTY-VGAMPGKVIQCMKKT-KTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTA 504 (1230)
Q Consensus 428 -~~~-~g~~~g~i~~~~~~~-~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~Ta 504 (1230)
... .......+...+... ...+-+|+||.++... .+-++... +.. .+ .+.-+|.||
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~---------~~~~l~~~---------~~~--~~-~~~kilvTT 136 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE---------DLEELREP---------LPS--FS-SGSKILVTT 136 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH---------HH----------------HC--HH-SS-EEEEEE
T ss_pred ccccccccccccccccchhhhccccceeeeeeecccc---------cccccccc---------ccc--cc-ccccccccc
Confidence 000 111122333344333 3334577799988531 11111110 000 11 245566666
Q ss_pred CCCCCCCHhhhcccceeecCCCCHHHHHHHHHHhhcc
Q psy8969 505 NVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIP 541 (1230)
Q Consensus 505 N~~~~I~~~L~~R~~~i~~~~~~~~e~~~i~~~~l~~ 541 (1230)
.... +...+-....++.+.+++.+|-..++.++...
T Consensus 137 R~~~-v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 137 RDRS-VAGSLGGTDKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp SCGG-GGTTHHSCEEEEECSS--HHHHHHHHHHHHTS
T ss_pred cccc-cccccccccccccccccccccccccccccccc
Confidence 6543 32333223678999999999999988887544
No 306
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.76 E-value=6.4e-05 Score=81.31 Aligned_cols=166 Identities=23% Similarity=0.366 Sum_probs=90.0
Q ss_pred HhhcCCCCCcccccccHHHHh-hhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC
Q psy8969 329 WLTSLPWGIQSEENLDLTQAA-KILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR 407 (1230)
Q Consensus 329 ~~~~lpw~~~~~~~~~~~~~~-~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~ 407 (1230)
||.+|+|.-. +.++--.+. --.+++.|-..-.++-++-.++....++......++|+|+.|+||||+.+.|+..
T Consensus 1 yl~~l~WDG~--~ri~~~~~~~~g~~d~~~~~~~~~~wl~~~Var~~~pg~k~d~~lvl~G~QG~GKStf~~~L~~~--- 75 (198)
T PF05272_consen 1 YLESLEWDGI--DRIDTLLADYLGTEDPEYNRYVFRKWLVGAVARAYEPGCKNDTVLVLVGKQGIGKSTFFRKLGPE--- 75 (198)
T ss_pred CCccCccCCc--chHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCCCcCceeeeEecCCcccHHHHHHHHhHH---
Confidence 4667899653 222211110 0012233333333555555555444445555678999999999999999999666
Q ss_pred CeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhh
Q psy8969 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDH 487 (1230)
Q Consensus 408 ~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~ 487 (1230)
|+.=++....+ +.....+ ..+-||.|||++.+.+. ..++|=.++- .....+...
T Consensus 76 -~~~d~~~~~~~----------------kd~~~~l----~~~~iveldEl~~~~k~----~~~~lK~~iT-~~~~~~R~p 129 (198)
T PF05272_consen 76 -YFSDSINDFDD----------------KDFLEQL----QGKWIVELDELDGLSKK----DVEALKSFIT-RRTDTYRPP 129 (198)
T ss_pred -hccCccccCCC----------------cHHHHHH----HHhHheeHHHHhhcchh----hHHHHHHHhc-ccceeeecC
Confidence 22111111111 1111111 12347889999988632 2233333332 233445555
Q ss_pred ccCccccC-CceEEEEecCCCCCCCH-hhhcccceeecCC
Q psy8969 488 YLDVPVDL-SRVLFICTANVIDTIPE-PLRDRMEMIDVSG 525 (1230)
Q Consensus 488 ~~~~~~d~-s~v~~I~TaN~~~~I~~-~L~~R~~~i~~~~ 525 (1230)
|-....+. .+.+||+|||..+-|.. .=-+||-+|++..
T Consensus 130 Y~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 130 YGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred CcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 55544444 45788999998764432 2446898888876
No 307
>PHA00732 hypothetical protein
Probab=97.74 E-value=1.4e-05 Score=73.01 Aligned_cols=49 Identities=33% Similarity=0.639 Sum_probs=41.2
Q ss_pred cccCCcccccccccCchhhhhhcc-cccCCCCEeecccccCccccchhhHHHHhhhccCc
Q psy8969 1164 PYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222 (1230)
Q Consensus 1164 PykCpve~CgKsF~~ks~Lk~H~R-tHTGEKPy~C~~e~CGKsF~~ks~LkrH~R~HtGE 1222 (1230)
||+| ..|++.|.+.+.|++|++ .|++ +.| +.||++|. +|..|++++..-
T Consensus 1 py~C--~~Cgk~F~s~s~Lk~H~r~~H~~---~~C--~~CgKsF~---~l~~H~~~~~~~ 50 (79)
T PHA00732 1 MFKC--PICGFTTVTLFALKQHARRNHTL---TKC--PVCNKSYR---RLNQHFYSQYDI 50 (79)
T ss_pred CccC--CCCCCccCCHHHHHHHhhcccCC---Ccc--CCCCCEeC---ChhhhhcccCCc
Confidence 7999 469999999999999998 4764 589 47999998 699999876543
No 308
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.73 E-value=9.4e-06 Score=89.10 Aligned_cols=55 Identities=44% Similarity=0.872 Sum_probs=47.0
Q ss_pred CCCcccCCcccccccccCchhhhhhcc-ccc------------------CCCCEeecccccCccccchhhHHHHhh
Q psy8969 1161 GIRPYKCPVEYCEKAFSTQYSRKAHIR-THT------------------GEKPYRCAHEFCSKSFKTSGDLQKHVR 1217 (1230)
Q Consensus 1161 GEKPykCpve~CgKsF~~ks~Lk~H~R-tHT------------------GEKPy~C~~e~CGKsF~~ks~LkrH~R 1217 (1230)
++|||+|||..|.|+++...-|+.||. -|- ..|||+| ++|+|.|+.-.-|+.|+.
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrC--evC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRC--EVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceec--cccchhhccCccceeccc
Confidence 469999999999999999999999975 451 3599999 689999999999999965
No 309
>PHA00616 hypothetical protein
Probab=97.73 E-value=8.9e-06 Score=65.00 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=28.6
Q ss_pred cccCCcccccccccCchhhhhhcccccCCCCEeec
Q psy8969 1164 PYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198 (1230)
Q Consensus 1164 PykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C~ 1198 (1230)
||+|+ .||+.|.+++.|.+|++.|+|++||.|.
T Consensus 1 pYqC~--~CG~~F~~~s~l~~H~r~~hg~~~~~~~ 33 (44)
T PHA00616 1 MYQCL--RCGGIFRKKKEVIEHLLSVHKQNKLTLE 33 (44)
T ss_pred CCccc--hhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence 78895 5999999999999999999999998883
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00031 Score=82.03 Aligned_cols=134 Identities=16% Similarity=0.239 Sum_probs=77.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHH
Q psy8969 285 KFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKK 364 (1230)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~ 364 (1230)
+|.+.|....+.+++...+.+++... |+. .+..+.+++++
T Consensus 146 ~~~~~L~~~gV~~~~~~~l~~~~~~~--~~~--------------------------------------~~~~~~~~v~~ 185 (407)
T PRK12726 146 DFVKFLKGRGISDTYVADFMQAGRKQ--FKQ--------------------------------------VETAHLDDITD 185 (407)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh--ccc--------------------------------------cccccHHHHHH
Confidence 45566778888888888887777432 211 11112344555
Q ss_pred HHHHHHHH----hhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcch--------hHHHhhcccc
Q psy8969 365 RILEFIAV----SQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSD--------VAEIKGHRRT 429 (1230)
Q Consensus 365 ~i~e~l~~----~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d--------~~~i~g~~~~ 429 (1230)
.+.+.|.. .......++.+++|+||+||||||++..||..+ |.+...++....+. .+++.|. ..
T Consensus 186 ~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgv-pv 264 (407)
T PRK12726 186 WFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV-EL 264 (407)
T ss_pred HHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCC-CE
Confidence 55555432 111123467899999999999999999999866 33333344322111 1112221 22
Q ss_pred ccccCchhHHHHHHhhc--CCCCEEEEecccc
Q psy8969 430 YVGAMPGKVIQCMKKTK--TENPLVLIDEVDK 459 (1230)
Q Consensus 430 ~~g~~~g~i~~~~~~~~--~~~pvillDEIDk 459 (1230)
++...|..+..++..+. ....+||||=.-.
T Consensus 265 ~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 265 IVATSPAELEEAVQYMTYVNCVDHILIDTVGR 296 (407)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence 34556777777777665 3457999986443
No 311
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.68 E-value=8.5e-05 Score=87.49 Aligned_cols=132 Identities=20% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCCCceEEEeCCCCCCchHHHHHHHHHhCCC-eEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEe
Q psy8969 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNRE-YFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLID 455 (1230)
Q Consensus 377 ~~~~~~~llL~GPPG~GKTslak~iA~~l~~~-~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillD 455 (1230)
....+++|.|+||+|+|||.|.-+.-..+-.+ =.|+..-... .++...-..+.|.. -.|....+.......||.||
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm--~~vh~~l~~~~~~~-~~l~~va~~l~~~~~lLcfD 134 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFM--LDVHSRLHQLRGQD-DPLPQVADELAKESRLLCFD 134 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHH--HHHHHHHHHHhCCC-ccHHHHHHHHHhcCCEEEEe
Confidence 34568999999999999999999998887641 1222211111 11111111112211 11333333333455699999
Q ss_pred cccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC------CC--------CHhhhccccee
Q psy8969 456 EVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID------TI--------PEPLRDRMEMI 521 (1230)
Q Consensus 456 EIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~------~I--------~~~L~~R~~~i 521 (1230)
|+.- .|+++|++ -..++..+ ++ ..|++|+|+|+.- .+ ...|.+||+|+
T Consensus 135 EF~V------~DiaDAmi-------l~rLf~~l----~~-~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv 196 (362)
T PF03969_consen 135 EFQV------TDIADAMI-------LKRLFEAL----FK-RGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVV 196 (362)
T ss_pred eeec------cchhHHHH-------HHHHHHHH----HH-CCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEE
Confidence 9873 46666533 11222222 22 5799999999642 11 23345688888
Q ss_pred ecCCCCHH
Q psy8969 522 DVSGYVAE 529 (1230)
Q Consensus 522 ~~~~~~~~ 529 (1230)
.+.+.++-
T Consensus 197 ~ld~~~Dy 204 (362)
T PF03969_consen 197 ELDGGVDY 204 (362)
T ss_pred EecCCCch
Confidence 88876543
No 312
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.66 E-value=0.0028 Score=77.14 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChH
Q psy8969 281 AIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGME 360 (1230)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~ 360 (1230)
...+++.++|.+..++.++.+.+.+.+..-. . ... ..+
T Consensus 196 p~~~~l~~~Ll~~dv~~~la~~l~~~l~~~~-----~---------------------------~~~----------~~~ 233 (484)
T PRK06995 196 PVRAALLKHLLAAGFSAQLVRMLVDNLPEGD-----D---------------------------AEA----------ALD 233 (484)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhhh-----c---------------------------hhH----------HHH
Confidence 4557788999999999999888888765321 0 000 112
Q ss_pred HHHHHHHHHHHHhh-hc-CCCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 361 DVKKRILEFIAVSQ-LK-GTTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 361 ~vK~~i~e~l~~~~-~~-~~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
-+++.|.+.+.... .. ...+|.+++|+||+|+||||++..||..+
T Consensus 234 ~l~~~l~~~l~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 234 WVQSALAKNLPVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred HHHHHHHHHHhhccCccccccCCcEEEEECCCCccHHHHHHHHHHHH
Confidence 23333333332111 10 12357899999999999999999999765
No 313
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=97.64 E-value=7.3e-05 Score=80.70 Aligned_cols=105 Identities=30% Similarity=0.363 Sum_probs=67.7
Q ss_pred cchhccceee----ccCCcccceeeeccC--------CcHHHHHHHHHHHHHHHHHHHhCcCC-HHHHHHHHhccCCCCC
Q psy8969 124 FYHVMQMAAE----NDDNFNDHKVSLVKD--------LSEVYSALMQEVIKTVRDIISMNPLY-KEQLMILLQQENSPVV 190 (1230)
Q Consensus 124 ~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 190 (1230)
-+.++.|.=+ .-+.|..+.|+.+++ ...+++++..++++.++++....+.+ +.+....+. ..
T Consensus 88 g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 162 (205)
T PF02190_consen 88 GLQRFKILKINNETQEDPYLVAEVEPLEDVEPPESDELDEEIKALLRELIKKIKEAYENLKELLPWDLLLKIN-----NP 162 (205)
T ss_dssp EEEEEEEEEEEE--ECSSCEEEEEEEE-----GCGHHHHHHHHHHHHHHHHHHH---HHHCCC-CHHHHHHTT-----TH
T ss_pred EEEEEEEEEEecccccCCceEEEEEEecccCccchhhhHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhh-----cc
Confidence 3445544333 244566888888743 12456777777777777533334444 444444443 47
Q ss_pred CChhHHHHHHHhcCCCChHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy8969 191 DNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKK 233 (1230)
Q Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~ 233 (1230)
++|..|+|++|+++.++.++||+||++.|+.+|++.++++|++
T Consensus 163 ~~~~~l~~~~~~~l~~~~~ek~~lL~~~~~~~Rl~~l~~~L~~ 205 (205)
T PF02190_consen 163 DNPPELADFVASLLPLSPEEKQELLETDDLKERLKLLIELLKK 205 (205)
T ss_dssp HHHHHHHHHHHHHS---HHHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999974
No 314
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.61 E-value=8e-05 Score=85.80 Aligned_cols=58 Identities=29% Similarity=0.592 Sum_probs=51.2
Q ss_pred hhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCC
Q psy8969 350 KILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNR 407 (1230)
Q Consensus 350 ~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~ 407 (1230)
...++++||++++.++|.+|+.........+.+||+|.||+|+|||||++.|-+.|-.
T Consensus 57 ~~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 57 PFFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 4466899999999999999997766767778899999999999999999999998853
No 315
>KOG1968|consensus
Probab=97.60 E-value=0.00019 Score=92.15 Aligned_cols=196 Identities=21% Similarity=0.222 Sum_probs=115.3
Q ss_pred ccccChHHHHHHHHHHHHHhhhc------C---CCCCc-eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHH
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLK------G---TTQGK-ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEI 423 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~------~---~~~~~-~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i 423 (1230)
+..++...++ .+.+|++..... . ..... .+++.||||+|||+.|.++|..+|...+.++.+..+....+
T Consensus 321 ~~~~~~~~~~-~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l 399 (871)
T KOG1968|consen 321 ALEGNASSSK-KASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKEL 399 (871)
T ss_pred hhhcccchhh-hhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHH
Confidence 3334444444 677777654111 1 11112 47999999999999999999999999999998877753333
Q ss_pred hhcccccccc--CchhHHHHHHhhc------CCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccC
Q psy8969 424 KGHRRTYVGA--MPGKVIQCMKKTK------TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495 (1230)
Q Consensus 424 ~g~~~~~~g~--~~g~i~~~~~~~~------~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~ 495 (1230)
.. -+|. ....|...+...+ ...-|||+||+|-+....+|. .+.|-.+.. .
T Consensus 400 ~~----~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~-v~~l~~l~~-----------------k 457 (871)
T KOG1968|consen 400 LN----KLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGG-VSKLSSLCK-----------------K 457 (871)
T ss_pred Hh----hhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhh-HHHHHHHHH-----------------h
Confidence 21 1111 1111222221110 112288999999886522222 223222211 2
Q ss_pred CceEEEEecCCCCCCCHhhhccc-ceeecCCCCHHHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhH
Q psy8969 496 SRVLFICTANVIDTIPEPLRDRM-EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV 574 (1230)
Q Consensus 496 s~v~~I~TaN~~~~I~~~L~~R~-~~i~~~~~~~~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gv 574 (1230)
+..-+|+|+|..+--+.-.++|. -.|.+..+..+....-+. ..+..+.+.++++.++.+++.+ .+.+
T Consensus 458 s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~----------si~~se~~ki~~~~l~~~s~~~--~~Di 525 (871)
T KOG1968|consen 458 SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIM----------SICKSEGIKISDDVLEEISKLS--GGDI 525 (871)
T ss_pred ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhh----------hhhcccceecCcHHHHHHHHhc--ccCH
Confidence 45567888998876555445554 456666666555433222 2345678889999999999875 6667
Q ss_pred HHHHHHHHHH
Q psy8969 575 RNLQKHIEKV 584 (1230)
Q Consensus 575 R~l~~~i~~i 584 (1230)
|+.--.+..+
T Consensus 526 R~~i~~lq~~ 535 (871)
T KOG1968|consen 526 RQIIMQLQFW 535 (871)
T ss_pred HHHHHHHhhh
Confidence 7664444443
No 316
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=97.57 E-value=0.00069 Score=81.00 Aligned_cols=77 Identities=31% Similarity=0.470 Sum_probs=68.9
Q ss_pred CCccCCCCCCCCCCchhhhcccc--ccCCC--CcccCCcccccccccCchhhhhhcccccCCCCEeecccccCccccchh
Q psy8969 1135 ENNVCPECKKTFSSAHHMKVHLR--IHSGI--RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSG 1210 (1230)
Q Consensus 1135 kpy~C~~CgK~F~s~s~Lk~H~R--~HTGE--KPykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF~~ks 1210 (1230)
.++.|..|.+.|.....|.+|.+ .|+++ +||.|+...|++.|.+...+.+|..+|++-+++.|....|.+.+....
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 57899999999999999999999 89999 999998557999999999999999999999998886666777776655
Q ss_pred h
Q psy8969 1211 D 1211 (1230)
Q Consensus 1211 ~ 1211 (1230)
.
T Consensus 368 ~ 368 (467)
T COG5048 368 N 368 (467)
T ss_pred C
Confidence 5
No 317
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0033 Score=74.83 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=23.4
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.++.+++|+||+|+||||++..||..+
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999754
No 318
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.53 E-value=0.00018 Score=75.43 Aligned_cols=126 Identities=17% Similarity=0.246 Sum_probs=65.1
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc--ch--hHHHhhccccccccCchhHHHHHHhh--cC-CCC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM--SD--VAEIKGHRRTYVGAMPGKVIQCMKKT--KT-ENP 450 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~--~d--~~~i~g~~~~~~g~~~g~i~~~~~~~--~~-~~p 450 (1230)
..+|.++.|.||+|+|||||.+.||..+...-=.+.+.|. .. ..+.....-.|+....+.-.+.+..+ -. .++
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 3578899999999999999999999875322112222221 11 11111111223333444344444333 23 456
Q ss_pred EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhccccee
Q psy8969 451 LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMI 521 (1230)
Q Consensus 451 villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i 521 (1230)
|+||||-..- ||+.....+.+...+.. . ....+|+++...+.+ ..+.+|.-++
T Consensus 103 illlDEP~~~---------------LD~~~~~~l~~~l~~~~-~-~~~tiii~sh~~~~~-~~~~d~~~~l 155 (163)
T cd03216 103 LLILDEPTAA---------------LTPAEVERLFKVIRRLR-A-QGVAVIFISHRLDEV-FEIADRVTVL 155 (163)
T ss_pred EEEEECCCcC---------------CCHHHHHHHHHHHHHHH-H-CCCEEEEEeCCHHHH-HHhCCEEEEE
Confidence 9999995431 44444333333332221 1 234566666665544 3445655443
No 319
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.48 E-value=7.5e-05 Score=73.74 Aligned_cols=31 Identities=32% Similarity=0.648 Sum_probs=27.1
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
+|++.||||+||||+|+.||+.+|.+++.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 4789999999999999999999997766543
No 320
>KOG2227|consensus
Probab=97.47 E-value=0.0029 Score=74.56 Aligned_cols=231 Identities=20% Similarity=0.309 Sum_probs=127.1
Q ss_pred CCCCCcccccccHHHHhhhhcc----cccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC--
Q psy8969 333 LPWGIQSEENLDLTQAAKILDD----DHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN-- 406 (1230)
Q Consensus 333 lpw~~~~~~~~~~~~~~~~l~~----d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~-- 406 (1230)
=||+...++ ..-..++.++.. .+.|=+.=.+.+.+|+... +. ...+..|-+.|-||+|||.+-.-+-..+.
T Consensus 126 ~~~~p~~ke-~~~~~~~~l~~t~~p~~l~gRe~e~~~v~~F~~~h-le-~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~ 202 (529)
T KOG2227|consen 126 TPMNPSAKE-ISEQRSESLLNTAPPGTLKGRELEMDIVREFFSLH-LE-LNTSGSLYVSGQPGTGKTALLSRVLDSLSKS 202 (529)
T ss_pred cCCCcccHH-HHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHhh-hh-cccCcceEeeCCCCcchHHHHHHHHHhhhhh
Confidence 366655544 333444455443 4567777778888887422 22 23456788999999999988775544443
Q ss_pred -CCe--EEEecCCcchhHHH-hhccccc----cccCch-hHHHHHHhh--cCCCC-EEEEecccccCCCCCCChhhHHHh
Q psy8969 407 -REY--FRFSVGGMSDVAEI-KGHRRTY----VGAMPG-KVIQCMKKT--KTENP-LVLIDEVDKIGKGYSGDPASALLE 474 (1230)
Q Consensus 407 -~~~--~~~~~~~~~d~~~i-~g~~~~~----~g~~~g-~i~~~~~~~--~~~~p-villDEIDk~~~~~~~~~~~all~ 474 (1230)
..+ +.++.-.+.....+ .+....+ +|...| ...+.|..- +..++ |+++||+|.+.... ..+|++
T Consensus 203 ~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~----~~vLy~ 278 (529)
T KOG2227|consen 203 SKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS----QTVLYT 278 (529)
T ss_pred cccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc----cceeee
Confidence 222 33443332322111 1111112 222222 112223221 12245 56699999987432 223333
Q ss_pred hcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhh---hccc----ceeecCCCCHHHHHHHHHHhhcchhHHhc
Q psy8969 475 MLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPL---RDRM----EMIDVSGYVAEEKVAIAAQYLIPQAMKES 547 (1230)
Q Consensus 475 ~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L---~~R~----~~i~~~~~~~~e~~~i~~~~l~~~~~~~~ 547 (1230)
+++ |+. ...+++++|.-||.+|--|..| ..|. .++.|.+|+.++...|++..+..
T Consensus 279 lFe-------wp~-----lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~------ 340 (529)
T KOG2227|consen 279 LFE-------WPK-----LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE------ 340 (529)
T ss_pred ehh-------ccc-----CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc------
Confidence 322 111 4568999999999987544333 2333 36899999999999999887632
Q ss_pred CCCCCCcccCHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHhhcC
Q psy8969 548 GLSPEQITLEPSAIQVLIKNYC-RESGVRNLQKHIEKVTRKVALTIVKKE 596 (1230)
Q Consensus 548 gl~~~~i~~~~~~~~~li~~~~-~e~gvR~l~~~i~~i~r~~~~~~~~~~ 596 (1230)
..-..+-+.+++..++... .-+++|.+.. |||. |.+|++.+
T Consensus 341 ---~~t~~~~~~Aie~~ArKvaa~SGDlRkaLd----v~R~-aiEI~E~e 382 (529)
T KOG2227|consen 341 ---ESTSIFLNAAIELCARKVAAPSGDLRKALD----VCRR-AIEIAEIE 382 (529)
T ss_pred ---ccccccchHHHHHHHHHhccCchhHHHHHH----HHHH-HHHHHHHH
Confidence 2233344567777776644 3555665543 4543 34555443
No 321
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.46 E-value=0.00033 Score=71.98 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=26.6
Q ss_pred eEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecC
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVG 415 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~ 415 (1230)
+++++||||+|||+++..+|..+ +.+.+.++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 36899999999999999999987 4555556654
No 322
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.0036 Score=79.49 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChH
Q psy8969 281 AIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGME 360 (1230)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~ 360 (1230)
...++++++|.+..++.++.+.+.+++..- .+... .++
T Consensus 125 ~~~~~l~~~Ll~~dv~~~la~~l~~~l~~~--------------------------------~~~~~----------~~~ 162 (767)
T PRK14723 125 PLRASLFRWLLGAGFSGQLARALLERLPVG--------------------------------YDRPA----------AMA 162 (767)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--------------------------------CCHHH----------HHH
Confidence 445678889999999999998888877421 00100 123
Q ss_pred HHHHHHHHHHHHhh-hc-CCCCCceEEEeCCCCCCchHHHHHHHHHh----CCCeEEE-ecCCc--------chhHHHhh
Q psy8969 361 DVKKRILEFIAVSQ-LK-GTTQGKILCFYGPPGVGKTSIAKSIARAL----NREYFRF-SVGGM--------SDVAEIKG 425 (1230)
Q Consensus 361 ~vK~~i~e~l~~~~-~~-~~~~~~~llL~GPPG~GKTslak~iA~~l----~~~~~~~-~~~~~--------~d~~~i~g 425 (1230)
-+++.|.+.+.+.. .. ...+|.+++|+||+|+||||++..||..+ |..-+-+ ..... ...+++.|
T Consensus 163 ~l~~~L~~~l~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g 242 (767)
T PRK14723 163 WIRNELATHLPVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG 242 (767)
T ss_pred HHHHHHHHHhhhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC
Confidence 33444444332111 11 12247899999999999999998888755 2212222 21111 11223333
Q ss_pred ccccccccCchhHHHHHHhhcCCCCEEEEecccc
Q psy8969 426 HRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDK 459 (1230)
Q Consensus 426 ~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk 459 (1230)
... ++...|..+.+++..... ..+||||=.-.
T Consensus 243 vpv-~~~~~~~~l~~al~~~~~-~D~VLIDTAGR 274 (767)
T PRK14723 243 VPV-HAVKDAADLRFALAALGD-KHLVLIDTVGM 274 (767)
T ss_pred CCc-cccCCHHHHHHHHHHhcC-CCEEEEeCCCC
Confidence 322 334457777777776553 47999986543
No 323
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.43 E-value=0.00021 Score=80.07 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=29.7
Q ss_pred hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC
Q psy8969 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE 408 (1230)
Q Consensus 375 ~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~ 408 (1230)
+....+|..++++||||||||+|++.|++.+...
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 3456788999999999999999999999998764
No 324
>KOG1808|consensus
Probab=97.42 E-value=0.00058 Score=92.21 Aligned_cols=145 Identities=23% Similarity=0.324 Sum_probs=100.6
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccc-ccc---CchhHHHHHHhhcCCCCEEEEecc
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTY-VGA---MPGKVIQCMKKTKTENPLVLIDEV 457 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~-~g~---~~g~i~~~~~~~~~~~pvillDEI 457 (1230)
..|||-||.|+|||++++-+|+++|.+++||+.-.-.|..++.|.+-+- -|. ..|.+++++. +...++||||
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr----~G~~~vlD~l 516 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALR----NGDWIVLDEL 516 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHH----hCCEEEeccc
Confidence 3588999999999999999999999999999988888888876622111 111 2355555554 4568999999
Q ss_pred cccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCC------CCCHhhhcccceeecCCCCHHHH
Q psy8969 458 DKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID------TIPEPLRDRMEMIDVSGYVAEEK 531 (1230)
Q Consensus 458 Dk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~------~I~~~L~~R~~~i~~~~~~~~e~ 531 (1230)
.-. ..|...||..+||.... -|+..-..+-..-.+.++.+|=|.+. .+..+|++||..+.+...+.++.
T Consensus 517 nla----~~dvL~aLnrllddnRe-l~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~e~~f~~~~e~e~ 591 (1856)
T KOG1808|consen 517 NLA----PHDVLEALNRLLDDNRE-LFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFIELHFDDIGEEEL 591 (1856)
T ss_pred ccc----chHHHHHHHhhhhhhcc-ccccccceeeccCcchhhhhhccCccccchhhhhhhcccccchhhhhhhcCchhh
Confidence 875 44678888888886322 12221111111123556678888774 56789999999998888777776
Q ss_pred HHHH
Q psy8969 532 VAIA 535 (1230)
Q Consensus 532 ~~i~ 535 (1230)
..|.
T Consensus 592 ~~i~ 595 (1856)
T KOG1808|consen 592 EEIL 595 (1856)
T ss_pred hhhh
Confidence 5544
No 325
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.0035 Score=75.14 Aligned_cols=79 Identities=20% Similarity=0.214 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHH
Q psy8969 284 EKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVK 363 (1230)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK 363 (1230)
..+.++|.+..+++++.+.+..++..-... + -..+.++
T Consensus 135 ~~~~~~L~~~~v~~~la~~l~~~~~~~~~~-----~-------------------------------------~~~~~~~ 172 (420)
T PRK14721 135 MKVLRTLLSAGFSPLLSRHLLEKLPADRDF-----E-------------------------------------QSLKKTI 172 (420)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhhh-----h-------------------------------------hHHHHHH
Confidence 567788999999999888887766432100 0 0123344
Q ss_pred HHHHHHHHHhh-hcCCCCCceEEEeCCCCCCchHHHHHHHHH
Q psy8969 364 KRILEFIAVSQ-LKGTTQGKILCFYGPPGVGKTSIAKSIARA 404 (1230)
Q Consensus 364 ~~i~e~l~~~~-~~~~~~~~~llL~GPPG~GKTslak~iA~~ 404 (1230)
+.|.+.|.... ......|.+++|+||+|+||||+.+.||..
T Consensus 173 ~~l~~~l~~~~~~~~~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 173 SLLTLNLRTIGGDEIIEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred HHHHHHHHhcCCccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44444442211 112246789999999999999999988875
No 326
>KOG1051|consensus
Probab=97.40 E-value=0.0019 Score=82.56 Aligned_cols=206 Identities=17% Similarity=0.189 Sum_probs=121.0
Q ss_pred HhcCCCC-hhHHHHHHHHHHHhccCCCCCCc--cchhhhHHHHhhcCCCCCcccccccHHHHh-hhhcccccChHHHHHH
Q psy8969 290 IKDKKVP-PPVMEVLNEELAKLGFLESHSSE--FNVTRNYLDWLTSLPWGIQSEENLDLTQAA-KILDDDHYGMEDVKKR 365 (1230)
Q Consensus 290 ~~~~~~~-~~~~~~~~~e~~~l~~~~~~~~e--~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~-~~l~~d~~G~~~vK~~ 365 (1230)
+.++.+. .+++..+++.. ...+++..+|. +.++.+|.-++.. .|+ -.||.-+.+.++-.+|
T Consensus 134 ~reag~~s~~vK~~ve~~~-g~~~~~~~~~~~~~~~L~~~~~dl~p--------------~a~~gkldPvigr~deeirR 198 (898)
T KOG1051|consen 134 MREAGFSSSAVKSAVEQPV-GQFRSPSRGPLWPLLFLENYGTDLTP--------------RARQGKLDPVIGRHDEEIRR 198 (898)
T ss_pred HHHhcCChHHHHHHHHhhc-cccCCCCcCCccchhHHHhcccccCh--------------hhhccCCCCccCCchHHHHH
Confidence 4456654 45555555555 44445555552 4455555533222 222 2355555554666677
Q ss_pred HHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhC----------CCeEEEecCCcchhHHHhhccccccccCc
Q psy8969 366 ILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN----------REYFRFSVGGMSDVAEIKGHRRTYVGAMP 435 (1230)
Q Consensus 366 i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~----------~~~~~~~~~~~~d~~~i~g~~~~~~g~~~ 435 (1230)
+++.|.....+ .=+|+|.||+|||.++.-+|.-.- ..++.++++.+.+. .+|-|...
T Consensus 199 vi~iL~Rrtk~------NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aG-------a~~rge~E 265 (898)
T KOG1051|consen 199 VIEILSRKTKN------NPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAG-------AKRRGEFE 265 (898)
T ss_pred HHHHHhccCCC------CceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccC-------cccchHHH
Confidence 77877654432 235899999999999999998642 45566666654442 23556677
Q ss_pred hhHHHHHHhhcCC-CC-EEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEE-EecCCC----C
Q psy8969 436 GKVIQCMKKTKTE-NP-LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFI-CTANVI----D 508 (1230)
Q Consensus 436 g~i~~~~~~~~~~-~p-villDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I-~TaN~~----~ 508 (1230)
+++-..++.+... .. |+||||++-+......+..-....+|-|.-. ...+-+| +|||.. -
T Consensus 266 ~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~-------------rg~l~~IGatT~e~Y~k~i 332 (898)
T KOG1051|consen 266 ERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLA-------------RGGLWCIGATTLETYRKCI 332 (898)
T ss_pred HHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHh-------------cCCeEEEecccHHHHHHHH
Confidence 7777777776633 34 5569999987543222111122223333211 1236677 444422 2
Q ss_pred CCCHhhhcccceeecCCCCHHHHHHHHH
Q psy8969 509 TIPEPLRDRMEMIDVSGYVAEEKVAIAA 536 (1230)
Q Consensus 509 ~I~~~L~~R~~~i~~~~~~~~e~~~i~~ 536 (1230)
.=+|+|-+||+.+-++-+..++...|+.
T Consensus 333 ekdPalErrw~l~~v~~pS~~~~~~iL~ 360 (898)
T KOG1051|consen 333 EKDPALERRWQLVLVPIPSVENLSLILP 360 (898)
T ss_pred hhCcchhhCcceeEeccCcccchhhhhh
Confidence 4589999999999888888887655543
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.39 E-value=0.00035 Score=71.80 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHH--hhcC-CCCEEEE
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMK--KTKT-ENPLVLI 454 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~--~~~~-~~pvill 454 (1230)
..+|.++++.||+|+|||||.++|+..+...-=.+.+.|.. .-.|+-...+.-.+.+. .+-. .++++++
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~--------~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV--------KIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE--------EEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 35778999999999999999999998764221112222210 11122222222233322 2222 4569999
Q ss_pred ecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhccccee
Q psy8969 455 DEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMI 521 (1230)
Q Consensus 455 DEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i 521 (1230)
||-.. -||+.....+.+.+... . ..+|++|+..+.+ ..+.||.-++
T Consensus 95 DEP~~---------------~LD~~~~~~l~~~l~~~----~-~til~~th~~~~~-~~~~d~v~~l 140 (144)
T cd03221 95 DEPTN---------------HLDLESIEALEEALKEY----P-GTVILVSHDRYFL-DQVATKIIEL 140 (144)
T ss_pred eCCcc---------------CCCHHHHHHHHHHHHHc----C-CEEEEEECCHHHH-HHhCCEEEEE
Confidence 99553 14544433333332222 2 3566667766655 4455665443
No 328
>PRK04296 thymidine kinase; Provisional
Probab=97.38 E-value=0.00052 Score=73.91 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.8
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
|.+.+++||||+||||+|..+|..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 5688999999999999998777765
No 329
>KOG0479|consensus
Probab=97.37 E-value=0.0005 Score=81.96 Aligned_cols=153 Identities=24% Similarity=0.401 Sum_probs=93.5
Q ss_pred hcccccChHHHHHHHHHHHHH---hhhc-CC-CCC-ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe--cC--Ccch--
Q psy8969 352 LDDDHYGMEDVKKRILEFIAV---SQLK-GT-TQG-KILCFYGPPGVGKTSIAKSIARALNREYFRFS--VG--GMSD-- 419 (1230)
Q Consensus 352 l~~d~~G~~~vK~~i~e~l~~---~~~~-~~-~~~-~~llL~GPPG~GKTslak~iA~~l~~~~~~~~--~~--~~~d-- 419 (1230)
|--.+||.+-||+.|+=.|-- ..+. |. .+| -.|||+|-|-|-|+-|.|.+-+..-+..-.-- .+ |++.
T Consensus 299 LAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 299 LAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred cCcccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 567899999999999876621 1111 11 223 24899999999999999988766433221110 11 1111
Q ss_pred -hHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcccc-CCc
Q psy8969 420 -VAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD-LSR 497 (1230)
Q Consensus 420 -~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d-~s~ 497 (1230)
...-.|.||-=.|+| ......|+-|||+||++. .| --|+.||++... ...-.. ++... ..+
T Consensus 379 TtD~eTGERRLEAGAM----------VLADRGVVCIDEFDKMsD---iD-RvAIHEVMEQqt-VTIaKA--GIHasLNAR 441 (818)
T KOG0479|consen 379 TTDQETGERRLEAGAM----------VLADRGVVCIDEFDKMSD---ID-RVAIHEVMEQQT-VTIAKA--GIHASLNAR 441 (818)
T ss_pred eeccccchhhhhcCce----------EEccCceEEehhcccccc---hh-HHHHHHHHhcce-EEeEec--cchhhhccc
Confidence 011245555555554 223457999999999853 22 357889886421 111110 11111 247
Q ss_pred eEEEEecCCCC-------------CCCHhhhccccee
Q psy8969 498 VLFICTANVID-------------TIPEPLRDRMEMI 521 (1230)
Q Consensus 498 v~~I~TaN~~~-------------~I~~~L~~R~~~i 521 (1230)
+-+|++||+.. .+|..||+||+.+
T Consensus 442 CSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLl 478 (818)
T KOG0479|consen 442 CSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLL 478 (818)
T ss_pred eeeeeecCccccccCCCCChhhccCCcHHHHhhhcEE
Confidence 88999999754 6799999999975
No 330
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00031 Score=77.23 Aligned_cols=29 Identities=28% Similarity=0.597 Sum_probs=26.0
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|..++++||+|||||||-+.||....
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999999998754
No 331
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.35 E-value=0.00017 Score=75.73 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.4
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
++..|+|+||||+|||++|+.||+.+|.+|+..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4678999999999999999999999999988543
No 332
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.34 E-value=0.00077 Score=78.98 Aligned_cols=27 Identities=44% Similarity=0.763 Sum_probs=22.4
Q ss_pred CCCceEEEeCCCCCCch-HHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKT-SIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKT-slak~iA~~l 405 (1230)
.++++|.|+||.||||| ||||..|+..
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45889999999999999 6777777765
No 333
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.33 E-value=0.00023 Score=87.00 Aligned_cols=95 Identities=18% Similarity=0.311 Sum_probs=81.3
Q ss_pred cCcCCCCCchhHHHHHHHHHhhhCCCCC--cCceeeeeEEEeeeEeecCCchHHHHHHHHcCcceeecCccccccccCch
Q psy8969 684 MAVKKDGPSAGITITTALVSLATGKPIK--QNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLP 761 (1230)
Q Consensus 684 ~~~pkdgpsag~~~~~a~~s~~~~~~v~--~~~amtgeitl~g~v~~iGG~kek~~aa~r~gi~~vi~p~~N~kDl~elP 761 (1230)
..+||+|+.=-.+||.||+.+.-..+.. .+..|-||++|.|.|.||.|+--=+++|+..|+ .+|+|.+|.....-+
T Consensus 72 a~~~K~G~~~DL~IA~~iL~a~~~i~~~~l~~~~~~GEL~LdG~lr~v~g~lp~~~~a~~~g~-~~~vp~~n~~ea~~v- 149 (506)
T PRK09862 72 ADLPKEGGRYDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGR-KIIVAKDNEDEVGLI- 149 (506)
T ss_pred CCCCCCCccccHHHHHHHHHhcCCCCchhhhCEEEEEEecCCceEeccchHHHHHHHHHHCCC-EEEeehHHHHHHhcC-
Confidence 3489999999999999999886545433 478999999999999999999999999999999 799999998875443
Q ss_pred hhHhhccceecccchhhhhhccc
Q psy8969 762 EYIREGLNVHFVSEWRQVYDLVF 784 (1230)
Q Consensus 762 e~vr~~l~i~fvs~~~eVl~ia~ 784 (1230)
.++++..+++..++.+...
T Consensus 150 ----~~~~v~~~~~L~~~~~~l~ 168 (506)
T PRK09862 150 ----NGEGCLIADHLQAVCAFLE 168 (506)
T ss_pred ----CCCeEEecCCHHHHHHHHc
Confidence 5788889999888887653
No 334
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0031 Score=75.66 Aligned_cols=118 Identities=19% Similarity=0.301 Sum_probs=73.6
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcch-hHHHhhccccccccCchhHHHHHHhh-cCCCCEEEEeccccc
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSD-VAEIKGHRRTYVGAMPGKVIQCMKKT-KTENPLVLIDEVDKI 460 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d-~~~i~g~~~~~~g~~~g~i~~~~~~~-~~~~pvillDEIDk~ 460 (1230)
+++++||-+|||||+.+.+.+.+...++.++.-++.. ..++ ..+...+... ......||||||..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l------------~d~~~~~~~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL------------LDLLRAYIELKEREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH------------HHHHHHHHHhhccCCceEEEecccCc
Confidence 8999999999999999999998876666666443332 1111 1111111111 114568999999975
Q ss_pred CCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCce-EEEEecCCC---CCCCHhhhcccceeecCCCCHHHHHHH
Q psy8969 461 GKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRV-LFICTANVI---DTIPEPLRDRMEMIDVSGYVAEEKVAI 534 (1230)
Q Consensus 461 ~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v-~~I~TaN~~---~~I~~~L~~R~~~i~~~~~~~~e~~~i 534 (1230)
- +-.. +++.+ +|..+. ++|+++|.. ..+.+.|..|...+.+.+++..|-...
T Consensus 107 ~-----~W~~-------------~lk~l----~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 107 P-----DWER-------------ALKYL----YDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred h-----hHHH-------------HHHHH----HccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 1 1111 12222 233332 555555543 466778888999999999999998653
No 335
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.32 E-value=0.0014 Score=89.16 Aligned_cols=52 Identities=25% Similarity=0.606 Sum_probs=42.3
Q ss_pred ccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe
Q psy8969 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY 409 (1230)
Q Consensus 354 ~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~ 409 (1230)
++.+|++...+.|.+.+.. ....++++.++||+|+||||||++++..+...|
T Consensus 184 ~~~vG~~~~l~~l~~lL~l----~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHL----ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred ccccchHHHHHHHHHHHcc----ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 3578999988888877632 234578899999999999999999999887665
No 336
>PRK14974 cell division protein FtsY; Provisional
Probab=97.32 E-value=0.001 Score=77.57 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=24.3
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.++.+++|+||||+||||++..+|..+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998888764
No 337
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0015 Score=79.44 Aligned_cols=28 Identities=29% Similarity=0.644 Sum_probs=24.3
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
...|.+++|+||+|+||||++..||..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999988764
No 338
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.29 E-value=0.0055 Score=69.79 Aligned_cols=91 Identities=22% Similarity=0.263 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccCh
Q psy8969 280 DAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGM 359 (1230)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~ 359 (1230)
++.+++++.+|-+..+..++.+.+.+++.+-..-. ...... .. .
T Consensus 4 ~~~~~~l~~~L~~~dv~~~~~~~i~~~~~~~~~~~-~~~~~~-------------------------~~----------~ 47 (272)
T TIGR00064 4 EDFFEELEEILLESDVGYEVVEKIIEALKKELKGK-KVKDAE-------------------------LL----------K 47 (272)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhc-cCCCHH-------------------------HH----------H
Confidence 35677889999999999999988888876421100 000000 00 1
Q ss_pred HHHHHHHHHHHHHh--h-hcCCCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 360 EDVKKRILEFIAVS--Q-LKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 360 ~~vK~~i~e~l~~~--~-~~~~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
+-+++.|.+.+... . .....++.+++|+||||+||||++..||..+.
T Consensus 48 ~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 48 EILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred HHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 22233333333211 1 11234568899999999999999999998773
No 339
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.28 E-value=0.00064 Score=71.77 Aligned_cols=25 Identities=40% Similarity=0.747 Sum_probs=21.6
Q ss_pred EEEeCCCCCCchHHHHHHHHHh---CCC
Q psy8969 384 LCFYGPPGVGKTSIAKSIARAL---NRE 408 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l---~~~ 408 (1230)
|+|.|+||+||||+.+-+.+.+ |.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 6899999999999999999998 555
No 340
>PHA02774 E1; Provisional
Probab=97.28 E-value=0.00091 Score=81.63 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=68.9
Q ss_pred hcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEE-EecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEE
Q psy8969 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR-FSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL 453 (1230)
Q Consensus 375 ~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~-~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvil 453 (1230)
+.+.++-..|+|+||||||||.+|-+|++.|+...+. ++. .+ .-|++- + ....|++
T Consensus 428 l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~---~s--------~FwLqp--------l----~d~ki~v 484 (613)
T PHA02774 428 LKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS---KS--------HFWLQP--------L----ADAKIAL 484 (613)
T ss_pred HhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC---cc--------ccccch--------h----ccCCEEE
Confidence 4565555689999999999999999999999755433 332 11 112221 1 1235899
Q ss_pred EecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCC---HhhhcccceeecCCC
Q psy8969 454 IDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIP---EPLRDRMEMIDVSGY 526 (1230)
Q Consensus 454 lDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~---~~L~~R~~~i~~~~~ 526 (1230)
|||+-.-.. .-....|..+||... --+|.=..-++.+..--+|.|||.--.-+ ..|.+|+.++.+...
T Consensus 485 lDD~t~~~w---~y~d~~Lrn~LdG~~--v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F~n~ 555 (613)
T PHA02774 485 LDDATHPCW---DYIDTYLRNALDGNP--VSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEFPNP 555 (613)
T ss_pred EecCcchHH---HHHHHHHHHHcCCCc--ceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEECCCC
Confidence 999821100 001123444555320 00111111123334456788899543333 467789999988653
No 341
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.28 E-value=0.00011 Score=80.97 Aligned_cols=73 Identities=30% Similarity=0.599 Sum_probs=46.7
Q ss_pred CCceecCCCccCccccChhhHHHHHhh-ccCCCCccccccccccccCCchhHhhhhccccCCCCccCCCCCcccCChhhH
Q psy8969 819 EKPYVCGEAGCDKSFASATNYKNHMRI-HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTL 897 (1230)
Q Consensus 819 ekpy~C~~~~Cgk~F~~~s~L~~H~r~-Htgekpy~C~~~~C~k~F~~~~~L~~H~~~H~~ekpy~C~~Cgk~F~~~~~L 897 (1230)
+|||+|+..+|.|+|++...|+-|+.- |-..+.+.-+ .=..|...-...|||+|++|+|.|.....|
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p------------~p~~~~~F~~~~KPYrCevC~KRYKNlNGL 414 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP------------SPEKMNIFSAKDKPYRCEVCDKRYKNLNGL 414 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCC------------CccccccccccCCceeccccchhhccCccc
Confidence 478888777888888888888887752 3222222111 111222223456888888888888888888
Q ss_pred HhHHhh
Q psy8969 898 NVHKKT 903 (1230)
Q Consensus 898 ~~H~k~ 903 (1230)
+-|+.-
T Consensus 415 KYHr~H 420 (423)
T COG5189 415 KYHRKH 420 (423)
T ss_pred eecccc
Confidence 888653
No 342
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00043 Score=71.92 Aligned_cols=38 Identities=29% Similarity=0.545 Sum_probs=30.0
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGG 416 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~ 416 (1230)
.+|..++|.||+|+|||||.++|+..+...--++.+.|
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~ 60 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC
Confidence 46789999999999999999999998764444444444
No 343
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.00042 Score=73.21 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=26.0
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.+++|.||+|+|||||.++||..+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35788999999999999999999999864
No 344
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.25 E-value=0.0017 Score=77.92 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChh--HHHHH--HHHHHhcCCCChhHHHHHHHHHHH
Q psy8969 234 ELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKD--AIEEK--FRERIKDKKVPPPVMEVLNEELAK 309 (1230)
Q Consensus 234 ~~~~~~~~~~i~~~~~~~~~~~q~~~~l~eq~~~i~~elg~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~e~~~ 309 (1230)
++...+|++-+...+.+.-.+.-++-|+.+|.- ..||+-..+++. .-..+ |..-|-..+++.++...+..++++
T Consensus 131 ~Is~~eL~~~v~~~l~~~~g~e~a~ry~~~~~~--~~~~~v~~~~~~~~~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~ 208 (475)
T PRK12337 131 EIGAKELEKRTARELAERYGEEARLRYRARQQN--AGELFVEEAEGAPRVPFSKGILAQSLMAAGLAPDVARRLARETER 208 (475)
T ss_pred ccCHHHHHHHHHHHHHHhcCHHHHHHHHHhccc--chheeeeeCCCCCCCCCchhHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444455666666666665555556666665532 345553222211 12223 556688899999999999999874
Q ss_pred -hccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeC
Q psy8969 310 -LGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYG 388 (1230)
Q Consensus 310 -l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~G 388 (1230)
|......-....-+|..+ ...|-+.. +- +.-++ |..........+|.+|++.|
T Consensus 209 ~L~~kg~~~~~ra~VR~~V---------------------~~~L~~~l-~~-~~a~~---y~la~~i~~~k~p~vil~~G 262 (475)
T PRK12337 209 DLRRSGDRVVRRDQLRRKV---------------------EALLLEEA-GE-EVARR---YRLLRSIRRPPRPLHVLIGG 262 (475)
T ss_pred HHHhcccccccHHHHHHHH---------------------HHHHHhhh-hh-hHHHH---HHHHHHhhccCCCeEEEEEC
Confidence 311111111111123332 11111111 11 11111 21122233334688999999
Q ss_pred CCCCCchHHHHHHHHHhCCCe
Q psy8969 389 PPGVGKTSIAKSIARALNREY 409 (1230)
Q Consensus 389 PPG~GKTslak~iA~~l~~~~ 409 (1230)
+||+||||+|..||..+|...
T Consensus 263 ~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 263 VSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCCCCHHHHHHHHHHHcCCcE
Confidence 999999999999999999863
No 345
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.22 E-value=0.00043 Score=73.76 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=25.6
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.+++|.||+|+|||||.+.|+..+.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35788999999999999999999998753
No 346
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00024 Score=74.37 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=29.1
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
+.|.|+|++|+||||+++.||+.|+.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 45789999999999999999999999998665
No 347
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.18 E-value=0.0069 Score=70.46 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCCChhHHHHHHHHHHHhccCCCCCCccchhhh
Q psy8969 246 REVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRN 325 (1230)
Q Consensus 246 ~~~~~~~~~~q~~~~l~eq~~~i~~elg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~e~~v~~~ 325 (1230)
++++..+.+.-. -+.++++.|.. +. .-.++.++++++.|-++.+..++.+.+.+.++.-..-....+. ..+
T Consensus 18 ~~~~~~~~~~~~--~~~~~~~~l~~--~~--~~~~~~~~~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~~~-~~~-- 88 (318)
T PRK10416 18 ERLKKGLSKTRE--NFGEGINGLFA--KK--KIDEDLLEELEELLIEADVGVETTEEIIEELRERVKRKNLKDP-EEL-- 88 (318)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCCCH-HHH--
Confidence 445555555542 24566666663 21 1123567889999999999999999998888643211110000 000
Q ss_pred HHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHH--hhhc-CCCCCceEEEeCCCCCCchHHHHHHH
Q psy8969 326 YLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAV--SQLK-GTTQGKILCFYGPPGVGKTSIAKSIA 402 (1230)
Q Consensus 326 yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~--~~~~-~~~~~~~llL~GPPG~GKTslak~iA 402 (1230)
.+-+++.|.+.+.. ..+. ...+|.+++|+||||+||||++..||
T Consensus 89 ---------------------------------~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 89 ---------------------------------KELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred ---------------------------------HHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHH
Confidence 11222333333310 0011 22467899999999999999999999
Q ss_pred HHhC
Q psy8969 403 RALN 406 (1230)
Q Consensus 403 ~~l~ 406 (1230)
..+.
T Consensus 136 ~~l~ 139 (318)
T PRK10416 136 HKYK 139 (318)
T ss_pred HHHH
Confidence 9874
No 348
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.18 E-value=0.00028 Score=74.80 Aligned_cols=35 Identities=31% Similarity=0.656 Sum_probs=31.2
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEec
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~ 414 (1230)
++++|+|.||||+||||+|+.|++.++.+|++++.
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 36789999999999999999999999988887654
No 349
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.18 E-value=0.00022 Score=83.46 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.8
Q ss_pred cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC
Q psy8969 376 KGTTQGKILCFYGPPGVGKTSIAKSIARALNRE 408 (1230)
Q Consensus 376 ~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~ 408 (1230)
.+..+|+-.|++||||||||+||+.||+.+...
T Consensus 164 ~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred cccccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 456788889999999999999999999988653
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.17 E-value=0.0066 Score=72.83 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEec
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSV 414 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~ 414 (1230)
.++.+++|+||||+||||++..||..+ |....-++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 346789999999999999999999887 544444443
No 351
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.15 E-value=0.00053 Score=72.55 Aligned_cols=28 Identities=36% Similarity=0.646 Sum_probs=25.3
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+|.++.|.||+|+|||||.++||..+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 5678999999999999999999998764
No 352
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.00089 Score=72.12 Aligned_cols=24 Identities=46% Similarity=0.761 Sum_probs=21.7
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCC
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNR 407 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~ 407 (1230)
.|+.|||||||||+-|-||+.+..
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhc
Confidence 789999999999999999998753
No 353
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.14 E-value=0.0015 Score=79.79 Aligned_cols=184 Identities=18% Similarity=0.295 Sum_probs=110.5
Q ss_pred eEEEeCCCCCCchHHHHHHHHHh--CCCeEEEecCCcch---hHHHhhcccc-ccccCchhHHHHHHhhcCCCCEEEEec
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARAL--NREYFRFSVGGMSD---VAEIKGHRRT-YVGAMPGKVIQCMKKTKTENPLVLIDE 456 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l--~~~~~~~~~~~~~d---~~~i~g~~~~-~~g~~~g~i~~~~~~~~~~~pvillDE 456 (1230)
.+|+.|-|||||--+||+|-... ..||+-++++-+.+ ++|+-|.... +.|+.+....-.+ ......-+||||
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~--~~A~gGtlFlde 415 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKL--EQADGGTLFLDE 415 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccc--eecCCCccHHHH
Confidence 48899999999999999997764 46899999887765 3455443221 1122111000000 112234799999
Q ss_pred ccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCC-------CCCCHhhhcccce--eecCCCC
Q psy8969 457 VDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVI-------DTIPEPLRDRMEM--IDVSGYV 527 (1230)
Q Consensus 457 IDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~-------~~I~~~L~~R~~~--i~~~~~~ 527 (1230)
|.-|.- ...++||.||......- +..-- .++| |-+|+||+.. ..+-+.|.=|+.. |.++++-
T Consensus 416 Igd~p~----~~Qs~LLrVl~e~~v~p-~g~~~-~~vd---irvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr 486 (606)
T COG3284 416 IGDMPL----ALQSRLLRVLQEGVVTP-LGGTR-IKVD---IRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLR 486 (606)
T ss_pred hhhchH----HHHHHHHHHHhhCceec-cCCcc-eeEE---EEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchh
Confidence 987632 34689999986432110 11111 2343 6788888742 2344555557664 4444433
Q ss_pred H-HHHHHHHHHhhcchhHHhcCCCCCCcccCHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8969 528 A-EEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVT 585 (1230)
Q Consensus 528 ~-~e~~~i~~~~l~~~~~~~~gl~~~~i~~~~~~~~~li~~~~~e~gvR~l~~~i~~i~ 585 (1230)
+ .|....+.+++ ++.+- ..+.++++++..|. .|-.-+++|.|...|+.++
T Consensus 487 ~R~d~~~~l~~~~-----~~~~~--~~~~l~~~~~~~l~-~~~WPGNirel~~v~~~~~ 537 (606)
T COG3284 487 ERSDRIPLLDRIL-----KREND--WRLQLDDDALARLL-AYRWPGNIRELDNVIERLA 537 (606)
T ss_pred cccccHHHHHHHH-----HHccC--CCccCCHHHHHHHH-hCCCCCcHHHHHHHHHHHH
Confidence 2 23344444433 33322 56899999999987 5666788999988888755
No 354
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.14 E-value=0.0066 Score=73.34 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=25.0
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+|.+++|+||||+||||++..||..+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4578899999999999999999998874
No 355
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00057 Score=71.04 Aligned_cols=29 Identities=31% Similarity=0.647 Sum_probs=26.1
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEE
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRF 412 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~ 412 (1230)
.|++.|.|||||||+++.|+ .+|.+.+.+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 58899999999999999999 999887654
No 356
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.12 E-value=0.0012 Score=76.40 Aligned_cols=183 Identities=17% Similarity=0.210 Sum_probs=102.2
Q ss_pred CCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCC
Q psy8969 313 LESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGV 392 (1230)
Q Consensus 313 ~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~ 392 (1230)
+.+++|++.++ +.+...|+.... -....+.|++-..|-+++++.+.++++............++|+|+.|+
T Consensus 17 l~~h~p~~~~t-----~~~~~~y~p~a~----~p~~~~~L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~n 87 (304)
T TIGR01613 17 LEPHDPDEIHT-----RKITTEYDPKAD----CPTWNGFLLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGN 87 (304)
T ss_pred cCCCCHHHeee-----eeccCCCCCCCC----CchHHHHHHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCC
Confidence 45667766544 234444543222 123344566656666778999999997755554566688999999999
Q ss_pred CchHHHHHHHHHhCCCeEEEecCCcchhHHHhhccccccccCchhHHHHHHhhcCCCCEEEEecccccCCCCCCChhhHH
Q psy8969 393 GKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASAL 472 (1230)
Q Consensus 393 GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~~~~pvillDEIDk~~~~~~~~~~~al 472 (1230)
|||++...|...+|.....+..+ + ....+.+++. ..... ....+++.||++.-. ....+.|
T Consensus 88 GKStl~~~l~~l~G~~~~~~~~~-~-~~~~~~~~~f-~~a~l------------~gk~l~~~~E~~~~~----~~~~~~l 148 (304)
T TIGR01613 88 GKSTFQNLLSNLLGDYATTAVAS-L-KMNEFQEHRF-GLARL------------EGKRAVIGDEVQKGY----RDDESTF 148 (304)
T ss_pred cHHHHHHHHHHHhChhhccCCcc-h-hhhhccCCCc-hhhhh------------cCCEEEEecCCCCCc----cccHHhh
Confidence 99999999999999654322111 1 0111111111 11111 123478899987421 1112333
Q ss_pred HhhcC--hhh-hhhhhhhccCccccCCceEEEEecCCCCCC---CHhhhcccceeecCCCC
Q psy8969 473 LEMLD--PEQ-NANFLDHYLDVPVDLSRVLFICTANVIDTI---PEPLRDRMEMIDVSGYV 527 (1230)
Q Consensus 473 l~~ld--~~q-~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I---~~~L~~R~~~i~~~~~~ 527 (1230)
-.+.. +-. ...+.+.+ .+. ....+|++||.+-.+ +.++.+|+-+|.+....
T Consensus 149 K~lt~gd~i~~~~k~k~~~---~~~-~~~~~i~~tN~~P~~~~~~~a~~RR~~vi~f~~~~ 205 (304)
T TIGR01613 149 KSLTGGDTITARFKNKDPF---EFT-PKFTLVQSTNHLPRIRGFDGGIKRRLRIIPFTKVF 205 (304)
T ss_pred hhhhcCCeEEeecccCCcE---EEE-EeeEEEEEcCCCCccCCCChhheeeEEEEeccCcC
Confidence 33331 100 01111111 122 256678888976555 57899999999886543
No 357
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.10 E-value=0.00063 Score=78.83 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=25.6
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.++.|.||.|+|||||.++|+..+.
T Consensus 30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 30 VQRGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35688999999999999999999998753
No 358
>PRK00625 shikimate kinase; Provisional
Probab=97.10 E-value=0.00039 Score=73.74 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=28.6
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
.|+|+|+||+||||+|+.||+.+|.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4789999999999999999999999998765
No 359
>PRK03839 putative kinase; Provisional
Probab=97.08 E-value=0.00041 Score=73.85 Aligned_cols=30 Identities=43% Similarity=0.786 Sum_probs=27.3
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEE
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRF 412 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~ 412 (1230)
.|+|.||||+||||+|+.||+.++.+|+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 478999999999999999999999998654
No 360
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.08 E-value=0.0007 Score=78.34 Aligned_cols=28 Identities=32% Similarity=0.704 Sum_probs=25.3
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||+|+|||||.++|+..+
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999875
No 361
>PRK13947 shikimate kinase; Provisional
Probab=97.07 E-value=0.00043 Score=72.84 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=28.2
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
.|+|.||||+|||++|+.||+.||.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4789999999999999999999999997654
No 362
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.05 E-value=0.0013 Score=69.25 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=25.7
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.++++.||+|+|||||+++|+..+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35788999999999999999999998763
No 363
>PRK08118 topology modulation protein; Reviewed
Probab=97.05 E-value=0.00047 Score=72.70 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=28.1
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
-|+++||||+||||+|+.||+.++.+++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4789999999999999999999999987665
No 364
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.05 E-value=0.0019 Score=70.89 Aligned_cols=138 Identities=13% Similarity=0.128 Sum_probs=89.5
Q ss_pred CceEEEeCCCC-CCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcc-----ccccccCchhHHHH---HHhh--cCCC
Q psy8969 381 GKILCFYGPPG-VGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHR-----RTYVGAMPGKVIQC---MKKT--KTEN 449 (1230)
Q Consensus 381 ~~~llL~GPPG-~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~-----~~~~g~~~g~i~~~---~~~~--~~~~ 449 (1230)
....||.|..+ .||.-++..+++.+.-.- +..+.-.|.-.+.... ...++ -..|++. +... ....
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~--i~~~~HPD~~~I~pe~~~~~~~~~I~--IdqIReL~~~l~~~p~~g~~ 90 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNS--IPLENNPDYHFIARETSATSNAKNIS--IEQIRKLQDFLSKTSAISGY 90 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccC--cccCCCCCEEEEeccccccccCCccc--HHHHHHHHHHHhhCcccCCc
Confidence 34578999998 999999999888875321 1222222211111000 00011 0122222 2221 1234
Q ss_pred CEEEEecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccceeecCCCCHH
Q psy8969 450 PLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAE 529 (1230)
Q Consensus 450 pvillDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~i~~~~~~~~ 529 (1230)
.|++||++|++.. ..++|||..|+.- -.+++||++|..++.|.|.++|||..+.+..+...
T Consensus 91 KViII~~ae~mt~----~AANALLKtLEEP---------------P~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~ 151 (263)
T PRK06581 91 KVAIIYSAELMNL----NAANSCLKILEDA---------------PKNSYIFLITSRAASIISTIRSRCFKINVRSSILH 151 (263)
T ss_pred EEEEEechHHhCH----HHHHHHHHhhcCC---------------CCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHH
Confidence 5999999999854 4678999999752 25788999889999999999999999999998887
Q ss_pred HHHHHHHHhhcc
Q psy8969 530 EKVAIAAQYLIP 541 (1230)
Q Consensus 530 e~~~i~~~~l~~ 541 (1230)
+-.+.....+.|
T Consensus 152 ~~~e~~~~~~~p 163 (263)
T PRK06581 152 AYNELYSQFIQP 163 (263)
T ss_pred HHHHHHHHhccc
Confidence 776666665544
No 365
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.05 E-value=0.00077 Score=77.60 Aligned_cols=28 Identities=39% Similarity=0.692 Sum_probs=25.6
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+|.++.|.||+|.|||||.++|+..+.
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5678999999999999999999999865
No 366
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.04 E-value=0.0015 Score=69.48 Aligned_cols=28 Identities=36% Similarity=0.631 Sum_probs=25.4
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+|.++.|.||.|+|||||.+.|+..+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 5788999999999999999999998764
No 367
>PRK06762 hypothetical protein; Provisional
Probab=97.00 E-value=0.0011 Score=69.59 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=28.8
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
+..++|.|+||+||||+|+.|++.++..++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 467899999999999999999999976666665
No 368
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.0015 Score=71.05 Aligned_cols=29 Identities=24% Similarity=0.538 Sum_probs=25.8
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.+++|.||+|+|||||.+.||..+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35788999999999999999999999754
No 369
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.99 E-value=0.00057 Score=70.31 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=27.3
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
|+|+||||+|||++|+.||+.+|.+|+..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999987544
No 370
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.99 E-value=0.0017 Score=69.81 Aligned_cols=27 Identities=22% Similarity=0.644 Sum_probs=24.2
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHH
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARA 404 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~ 404 (1230)
..+|.++++.||+|+|||||.|+|...
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 467899999999999999999999764
No 371
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=96.98 E-value=0.00097 Score=78.35 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=25.8
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.++.|.||.|+|||||.++|+..+.
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35789999999999999999999998753
No 372
>PRK07261 topology modulation protein; Provisional
Probab=96.98 E-value=0.0011 Score=70.34 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=27.4
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
.|+++||||+||||||+.||+.++.+++.++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 3789999999999999999999998876653
No 373
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.98 E-value=0.0016 Score=76.76 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=28.3
Q ss_pred CCCCCceEEEeCCCCCCchHHHHHHHHHhCCC
Q psy8969 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNRE 408 (1230)
Q Consensus 377 ~~~~~~~llL~GPPG~GKTslak~iA~~l~~~ 408 (1230)
...+|..++++||||+|||+|++.|++.+...
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 35678889999999999999999999998665
No 374
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.98 E-value=0.00011 Score=50.85 Aligned_cols=23 Identities=52% Similarity=1.086 Sum_probs=12.0
Q ss_pred ccCCcccccccccCchhhhhhcccc
Q psy8969 1165 YKCPVEYCEKAFSTQYSRKAHIRTH 1189 (1230)
Q Consensus 1165 ykCpve~CgKsF~~ks~Lk~H~RtH 1189 (1230)
|+|+ .|++.|.+++.|++|++.|
T Consensus 1 y~C~--~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCP--ICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEET--TTTEEESSHHHHHHHHHHH
T ss_pred CCCC--CCCCccCCHHHHHHHHhHC
Confidence 4453 3555555555555555543
No 375
>PRK10867 signal recognition particle protein; Provisional
Probab=96.98 E-value=0.016 Score=69.98 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=28.2
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh----CCCeEEEecC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL----NREYFRFSVG 415 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l----~~~~~~~~~~ 415 (1230)
.++.+++|+||||+||||++.-+|..+ |.+...+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 456889999999999999888888765 5555555543
No 376
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.96 E-value=0.00039 Score=59.07 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=21.3
Q ss_pred ccCCCCCCCCCCchhhhcccc-ccCCC-CcccCCcccccccccCchhhhhhccc
Q psy8969 1137 NVCPECKKTFSSAHHMKVHLR-IHSGI-RPYKCPVEYCEKAFSTQYSRKAHIRT 1188 (1230)
Q Consensus 1137 y~C~~CgK~F~s~s~Lk~H~R-~HTGE-KPykCpve~CgKsF~~ks~Lk~H~Rt 1188 (1230)
|.|++|++.| +..+|..|.. .|..+ +.+.||+ |...++. +|.+|++.
T Consensus 3 f~CP~C~~~~-~~~~L~~H~~~~H~~~~~~v~CPi--C~~~~~~--~l~~Hl~~ 51 (54)
T PF05605_consen 3 FTCPYCGKGF-SESSLVEHCEDEHRSESKNVVCPI--CSSRVTD--NLIRHLNS 51 (54)
T ss_pred cCCCCCCCcc-CHHHHHHHHHhHCcCCCCCccCCC--chhhhhh--HHHHHHHH
Confidence 4555555532 2344555533 44433 3455543 5543332 44455443
No 377
>KOG3347|consensus
Probab=96.95 E-value=0.00065 Score=68.60 Aligned_cols=34 Identities=29% Similarity=0.538 Sum_probs=30.1
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
..+.||+.|-|||||||+|..||..+|.+++.++
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 3567889999999999999999999999997654
No 378
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.94 E-value=0.01 Score=68.96 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=30.0
Q ss_pred cCCCCCceEEEeCCCCCCch-HHHHHHHHHhCCCeEEEec
Q psy8969 376 KGTTQGKILCFYGPPGVGKT-SIAKSIARALNREYFRFSV 414 (1230)
Q Consensus 376 ~~~~~~~~llL~GPPG~GKT-slak~iA~~l~~~~~~~~~ 414 (1230)
....+...++|+|++||||| +|+.+++-+....++.+.+
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~v 57 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYV 57 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEc
Confidence 34455677899999999999 6788888887766665553
No 379
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.94 E-value=0.0013 Score=71.27 Aligned_cols=72 Identities=17% Similarity=0.344 Sum_probs=43.6
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCe-EE-EecCCcchhHHH-hhcc-----ccccccCchhHHHHHHhhcCCC-CEEE
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREY-FR-FSVGGMSDVAEI-KGHR-----RTYVGAMPGKVIQCMKKTKTEN-PLVL 453 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~-~~-~~~~~~~d~~~i-~g~~-----~~~~g~~~g~i~~~~~~~~~~~-pvil 453 (1230)
.+++.||+|+||||++++++..+..+. .+ +.+.+ ..++ .... ..-+|..+..+.++++.+-..+ .+|+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~---~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii 79 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED---PIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVIL 79 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC---CccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEE
Confidence 578999999999999999999886431 11 22222 1121 1111 1113444445566666655544 4999
Q ss_pred Eecc
Q psy8969 454 IDEV 457 (1230)
Q Consensus 454 lDEI 457 (1230)
+||+
T Consensus 80 ~gEi 83 (198)
T cd01131 80 VGEM 83 (198)
T ss_pred EcCC
Confidence 9998
No 380
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.94 E-value=0.0017 Score=72.63 Aligned_cols=29 Identities=34% Similarity=0.631 Sum_probs=26.5
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.++++.||.|+|||||.|+|++.+.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999999999999999999999876
No 381
>PRK14530 adenylate kinase; Provisional
Probab=96.93 E-value=0.00076 Score=74.01 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=27.6
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEE
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFR 411 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~ 411 (1230)
++.|+|+||||+||||+|+.||+.+|.+++.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4578899999999999999999999987764
No 382
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.91 E-value=0.00068 Score=69.03 Aligned_cols=31 Identities=35% Similarity=0.666 Sum_probs=27.8
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
+|++.||||+|||++|+.||+.+|.+++..+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 4789999999999999999999999986554
No 383
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0006 Score=79.41 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|..++|.||+||||||+-|+||..-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4677889999999999999999999864
No 384
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.90 E-value=0.0013 Score=69.93 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.9
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHH
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIAR 403 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~ 403 (1230)
..+|.++.|.||.|+|||||.++|+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 35678999999999999999999964
No 385
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.90 E-value=0.0022 Score=68.15 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=25.8
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.++.|.||+|+|||||+++||..+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 35788999999999999999999998764
No 386
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.90 E-value=0.0017 Score=70.43 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.3
Q ss_pred ceEEEeCCCCCCchHHHHHHHH
Q psy8969 382 KILCFYGPPGVGKTSIAKSIAR 403 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~ 403 (1230)
++++|.||.|+|||||.++|+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999983
No 387
>PRK08233 hypothetical protein; Provisional
Probab=96.89 E-value=0.0019 Score=68.35 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=24.6
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
++.+|.+.||||+||||+|+.||..++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357888999999999999999999996
No 388
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.89 E-value=0.00083 Score=68.21 Aligned_cols=30 Identities=37% Similarity=0.708 Sum_probs=25.6
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEec
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~ 414 (1230)
.+++.||||+||||+|+.+++.++ +..++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~--~~~i~~ 30 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG--AVVISQ 30 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST--EEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC--CEEEeH
Confidence 478999999999999999999999 444553
No 389
>PRK13949 shikimate kinase; Provisional
Probab=96.88 E-value=0.00077 Score=71.26 Aligned_cols=31 Identities=29% Similarity=0.541 Sum_probs=28.0
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
.|+|+||||+||||+|+.||+.++.+|+-.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4789999999999999999999999987654
No 390
>PRK13948 shikimate kinase; Provisional
Probab=96.88 E-value=0.00093 Score=71.43 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
.++..|+|.|+||+||||+++.||+.||++|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 35677899999999999999999999999998766
No 391
>PRK13695 putative NTPase; Provisional
Probab=96.88 E-value=0.0028 Score=67.08 Aligned_cols=23 Identities=48% Similarity=0.781 Sum_probs=20.6
Q ss_pred eEEEeCCCCCCchHHHHHHHHHh
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l 405 (1230)
.++|.|+||+|||||++.|+..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37799999999999999998876
No 392
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.86 E-value=0.0032 Score=73.11 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=33.0
Q ss_pred cCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 376 KGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 376 ~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
+...++..|.|.|+||+|||++|+.+|+.||++|+.++
T Consensus 128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 34456778999999999999999999999999998544
No 393
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.86 E-value=0.0027 Score=75.21 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHH
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARA 404 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~ 404 (1230)
.+..+++.||||||||.||.+|+..
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHH
Confidence 4467999999999999999998776
No 394
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0025 Score=69.85 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=25.9
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|..+-++||.|+|||||+|+||....
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 46788999999999999999999998754
No 395
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.84 E-value=0.00083 Score=73.74 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=19.9
Q ss_pred CceEEEeCCCCCCchHHHHHHH
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIA 402 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA 402 (1230)
+..+||||+||+||||+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4669999999999999999986
No 396
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.84 E-value=0.0014 Score=77.64 Aligned_cols=27 Identities=33% Similarity=0.657 Sum_probs=24.4
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..|.++.|+||+|+|||||.++||..+
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999854
No 397
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.84 E-value=0.00097 Score=71.64 Aligned_cols=53 Identities=30% Similarity=0.536 Sum_probs=34.7
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEec----------CCcchhHHHhhccccccccC
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSV----------GGMSDVAEIKGHRRTYVGAM 434 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~----------~~~~d~~~i~g~~~~~~g~~ 434 (1230)
.+++++||+|||||.+|-++|+.+|.|.+..+. +|-..++++.|.+|.|.++.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r 64 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDR 64 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES---
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccc
Confidence 367899999999999999999999999987761 23345667777777776653
No 398
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.82 E-value=0.0015 Score=75.53 Aligned_cols=28 Identities=39% Similarity=0.720 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||+|+|||||.+.|+..+
T Consensus 25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl~ 52 (301)
T TIGR03522 25 AQKGRIVGFLGPNGAGKSTTMKIITGYL 52 (301)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999864
No 399
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.82 E-value=0.00082 Score=69.14 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=25.9
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEE
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFR 411 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~ 411 (1230)
+++|.||||+||||+|+.|++.++..++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 47899999999999999999999887654
No 400
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0015 Score=77.23 Aligned_cols=28 Identities=25% Similarity=0.616 Sum_probs=25.1
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+|.+++|.||+|+|||||.++||..+.
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 4678999999999999999999999753
No 401
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=96.81 E-value=0.0015 Score=77.87 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=24.6
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..|.+++|+||+|+|||||.++||...
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999999775
No 402
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.79 E-value=0.0038 Score=66.43 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=24.9
Q ss_pred eEEEeCCCCCCchHHHHHHHHHh---CCCeEEEec
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARAL---NREYFRFSV 414 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~ 414 (1230)
+++++||||+|||+||..+|... |.+.+.+++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 47899999999999998776643 566666664
No 403
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.79 E-value=0.00093 Score=71.08 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=27.5
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM 417 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~ 417 (1230)
+|+++||||+||||+|+.||+.+|. ..++++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~ 33 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGF--THLSAGDL 33 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCC--eEEECChH
Confidence 4789999999999999999999985 45665544
No 404
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.79 E-value=0.003 Score=66.82 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=51.9
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchh---HHHhhcccc----c-cccCchhHHHHHHhhcCCCCEEE
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDV---AEIKGHRRT----Y-VGAMPGKVIQCMKKTKTENPLVL 453 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~---~~i~g~~~~----~-~g~~~g~i~~~~~~~~~~~pvil 453 (1230)
.++++.||||+|||++|..+|..++.+.+.++-+...|. ..+.-|... | .-+.|..+...+........+|+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~Vl 81 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVL 81 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEE
Confidence 368899999999999999999999988888876666553 234334321 1 12335556666554333455788
Q ss_pred Eecccc
Q psy8969 454 IDEVDK 459 (1230)
Q Consensus 454 lDEIDk 459 (1230)
||=+--
T Consensus 82 ID~Lt~ 87 (170)
T PRK05800 82 VDCLTT 87 (170)
T ss_pred ehhHHH
Confidence 876544
No 405
>PRK06696 uridine kinase; Validated
Probab=96.79 E-value=0.0026 Score=70.24 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=34.6
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcch
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMSD 419 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~d 419 (1230)
...+.+|.+.||||+||||+|+.||+.| |.+.+.+++.+.-.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 3456789999999999999999999999 67777777655543
No 406
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.78 E-value=0.0009 Score=46.29 Aligned_cols=23 Identities=43% Similarity=1.132 Sum_probs=21.2
Q ss_pred EeecccccCccccchhhHHHHhhhc
Q psy8969 1195 YRCAHEFCSKSFKTSGDLQKHVRTH 1219 (1230)
Q Consensus 1195 y~C~~e~CGKsF~~ks~LkrH~R~H 1219 (1230)
|+|+ .|++.|.++.+|++|++.|
T Consensus 1 y~C~--~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCP--ICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEET--TTTEEESSHHHHHHHHHHH
T ss_pred CCCC--CCCCccCCHHHHHHHHhHC
Confidence 7894 7999999999999999986
No 407
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0018 Score=69.06 Aligned_cols=31 Identities=35% Similarity=0.726 Sum_probs=25.8
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecC
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSVG 415 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~ 415 (1230)
.|++.||||+||||+|+.||+.++ +..++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~--i~hlstg 32 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG--LPHLDTG 32 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CcEEcHh
Confidence 378999999999999999999955 5566644
No 408
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.77 E-value=0.0024 Score=68.21 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=25.3
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+|.+++|.||+|+|||||.+.||..+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999998864
No 409
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.76 E-value=0.0018 Score=74.88 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=25.2
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||+|+|||||.++|+..+
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999865
No 410
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.75 E-value=0.0014 Score=69.89 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=26.6
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeE
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYF 410 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~ 410 (1230)
-+++++.||||+||||+|+.||+.+|.+.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 468999999999999999999999986554
No 411
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.74 E-value=0.0096 Score=71.18 Aligned_cols=64 Identities=31% Similarity=0.611 Sum_probs=56.4
Q ss_pred CcccCCcccccccccCchhhhhhcc--cccCC--CCEeecccccCccccchhhHHHHhhhccCccccccc
Q psy8969 1163 RPYKCPVEYCEKAFSTQYSRKAHIR--THTGE--KPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQMSGL 1228 (1230)
Q Consensus 1163 KPykCpve~CgKsF~~ks~Lk~H~R--tHTGE--KPy~C~~e~CGKsF~~ks~LkrH~R~HtGE~~~s~~ 1228 (1230)
.++.| ..|...|.+...|.+|.+ .|+++ +||.|+...|++.|.+...+.+|..+|++-......
T Consensus 288 ~~~~~--~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (467)
T COG5048 288 LPIKS--KQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEK 355 (467)
T ss_pred cCCCC--ccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccc
Confidence 57899 569999999999999999 89999 999996336999999999999999999987655443
No 412
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.74 E-value=0.026 Score=73.26 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.5
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHH
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARA 404 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~ 404 (1230)
...++++.||.+.|||++.|.|+-.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~ 350 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLA 350 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHH
Confidence 3468999999999999999988754
No 413
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.74 E-value=0.002 Score=70.32 Aligned_cols=28 Identities=25% Similarity=0.574 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||+|+|||||+++|+..+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999875
No 414
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.74 E-value=0.0021 Score=69.90 Aligned_cols=27 Identities=37% Similarity=0.631 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.++.|.||+|+|||||.++||..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999999875
No 415
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.73 E-value=0.02 Score=69.14 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=27.6
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh----CCCeEEEec
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL----NREYFRFSV 414 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l----~~~~~~~~~ 414 (1230)
.++.+++|+||||+||||+|.-+|..+ |.+...+++
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346789999999999999998888774 344444554
No 416
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.70 E-value=0.0047 Score=68.34 Aligned_cols=90 Identities=19% Similarity=0.496 Sum_probs=59.0
Q ss_pred ceEEEeCCCCCCchHHHHHHHH------HhCCCeEEEecCCc---chhHHHhhcccc-ccccCchhHHHHHHhhcCCCCE
Q psy8969 382 KILCFYGPPGVGKTSIAKSIAR------ALNREYFRFSVGGM---SDVAEIKGHRRT-YVGAMPGKVIQCMKKTKTENPL 451 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~------~l~~~~~~~~~~~~---~d~~~i~g~~~~-~~g~~~g~i~~~~~~~~~~~pv 451 (1230)
..|||+||.|.||+-||+-|=+ .+.-+|+.+++..+ ...+.+-||-.. +.|+...+ ..+.. .....+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r--~gllr-sadggm 285 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESR--EGLLR-SADGGM 285 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhh--hhhhc-cCCCce
Confidence 3488999999999999987754 46789999996544 345556676543 33443211 11111 123468
Q ss_pred EEEecccccCCCCCCChhhHHHhhcCh
Q psy8969 452 VLIDEVDKIGKGYSGDPASALLEMLDP 478 (1230)
Q Consensus 452 illDEIDk~~~~~~~~~~~all~~ld~ 478 (1230)
+|||||..++. |....||..++.
T Consensus 286 lfldeigelga----deqamllkaiee 308 (531)
T COG4650 286 LFLDEIGELGA----DEQAMLLKAIEE 308 (531)
T ss_pred EehHhhhhcCc----cHHHHHHHHHHh
Confidence 99999998865 556677777654
No 417
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.70 E-value=0.0015 Score=69.22 Aligned_cols=33 Identities=30% Similarity=0.649 Sum_probs=29.2
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
...|+|+||||+||||+|+.||..+|.+|+..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 346889999999999999999999999987654
No 418
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.70 E-value=0.0025 Score=69.48 Aligned_cols=28 Identities=39% Similarity=0.635 Sum_probs=25.3
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.+++|.||+|+|||||.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999875
No 419
>PRK14532 adenylate kinase; Provisional
Probab=96.69 E-value=0.0012 Score=70.63 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=26.8
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM 417 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~ 417 (1230)
|+|.||||+||||+|+.||+.+|.++ ++.+++
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~ 34 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDM 34 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHH
Confidence 77999999999999999999998765 454433
No 420
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.68 E-value=0.0015 Score=68.78 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=28.7
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
..|+|.|+||+|||++|+.||+.+|.+|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35788999999999999999999999998654
No 421
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.68 E-value=0.0019 Score=76.85 Aligned_cols=28 Identities=36% Similarity=0.641 Sum_probs=25.0
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..|.+++|.||+|+|||||.++||..+.
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4678999999999999999999998653
No 422
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0026 Score=67.28 Aligned_cols=28 Identities=39% Similarity=0.665 Sum_probs=25.1
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+|..+.+.||+|+|||||.+.||..+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999998753
No 423
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0015 Score=67.12 Aligned_cols=29 Identities=31% Similarity=0.602 Sum_probs=26.3
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEE
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFR 411 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~ 411 (1230)
.|-+.||||+||||+|+.||+.+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 46789999999999999999999999863
No 424
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.65 E-value=0.0063 Score=67.61 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=28.2
Q ss_pred CCCCCceEEEeCCCCCCchHHHH-HHHHHh--CCCeEEEec
Q psy8969 377 GTTQGKILCFYGPPGVGKTSIAK-SIARAL--NREYFRFSV 414 (1230)
Q Consensus 377 ~~~~~~~llL~GPPG~GKTslak-~iA~~l--~~~~~~~~~ 414 (1230)
+..++..+++.||||+|||++|. .++..+ |.+.+.++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 45678899999999999999975 445443 455566664
No 425
>PRK06217 hypothetical protein; Validated
Probab=96.64 E-value=0.0015 Score=69.90 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=27.8
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
.|+|.|+||+||||+|+.||+.+|.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4889999999999999999999999986554
No 426
>PRK13946 shikimate kinase; Provisional
Probab=96.64 E-value=0.0016 Score=69.64 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=30.3
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
.+..|+|.|+||+|||++|+.||+.||.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3457899999999999999999999999998655
No 427
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.63 E-value=0.0055 Score=66.43 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=22.5
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
+| +++|+||.|+|||+|.++|+-.+
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 45 88999999999999999999775
No 428
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.62 E-value=0.0033 Score=70.57 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=24.8
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.++.|.||+|+|||||.++||..+
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999875
No 429
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.62 E-value=0.003 Score=74.54 Aligned_cols=29 Identities=31% Similarity=0.615 Sum_probs=25.5
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.+++|.||+|+|||||.++||....
T Consensus 29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 35688999999999999999999998753
No 430
>PF14516 AAA_35: AAA-like domain
Probab=96.61 E-value=0.01 Score=69.55 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=38.7
Q ss_pred cccccChHH-HHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCc
Q psy8969 353 DDDHYGMED-VKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGM 417 (1230)
Q Consensus 353 ~~d~~G~~~-vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~ 417 (1230)
|...|--.. +-+.+.+.| ..+|.-+.+.||..+|||||...+.+.+ |...+.+++.++
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i-------~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEI-------VQPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CCCcccCchHHHHHHHHHH-------hcCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 334443333 455555555 2457889999999999999998877665 555666775543
No 431
>PRK04040 adenylate kinase; Provisional
Probab=96.61 E-value=0.0035 Score=67.45 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=27.9
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHh--CCCeEEEecCC
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARAL--NREYFRFSVGG 416 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l--~~~~~~~~~~~ 416 (1230)
+..++++|+||+||||+++.+++.+ +.++ ++.|+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~ 37 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGD 37 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE--Eecch
Confidence 4678999999999999999999999 5555 44444
No 432
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.61 E-value=0.0041 Score=67.57 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=21.7
Q ss_pred CceEEEeCCCCCCchHHHHHHHHH
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARA 404 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~ 404 (1230)
+.+++|.||+|+|||||.|+|+..
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 578999999999999999999853
No 433
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.60 E-value=0.0024 Score=71.80 Aligned_cols=30 Identities=30% Similarity=0.607 Sum_probs=24.9
Q ss_pred EEEeCCCCCCchHHHHHHHHHhC---CCeEEEe
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALN---REYFRFS 413 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~---~~~~~~~ 413 (1230)
|+|.|+||+||||+|+.||+.+. .+++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 78999999999999999999984 4444444
No 434
>PRK14527 adenylate kinase; Provisional
Probab=96.59 E-value=0.0016 Score=70.07 Aligned_cols=32 Identities=38% Similarity=0.715 Sum_probs=28.3
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCCeE
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYF 410 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~~~ 410 (1230)
.+|++|+++||||+||||+|+.||+.+|.+.+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 35789999999999999999999999987543
No 435
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0052 Score=65.38 Aligned_cols=28 Identities=32% Similarity=0.661 Sum_probs=25.1
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+|.+++|.||+|+|||||+++|+..+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5688999999999999999999997654
No 436
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.59 E-value=0.0061 Score=70.88 Aligned_cols=44 Identities=30% Similarity=0.586 Sum_probs=35.6
Q ss_pred HHHHHH--hhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCeE
Q psy8969 367 LEFIAV--SQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF 410 (1230)
Q Consensus 367 ~e~l~~--~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~~ 410 (1230)
++||.. ..++|.++..-|+++|||.||||.++-+|-+.|+...+
T Consensus 246 i~Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkVi 291 (432)
T PF00519_consen 246 ISFLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVI 291 (432)
T ss_dssp HHHHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCEEE
Confidence 444432 34578888889999999999999999999999987654
No 437
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.58 E-value=0.0092 Score=68.31 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=34.0
Q ss_pred HHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCCe
Q psy8969 369 FIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY 409 (1230)
Q Consensus 369 ~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~~ 409 (1230)
|..+........|-+|++.||+|+||||+|..||..+|.+.
T Consensus 80 y~~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 80 YLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 44445556656778899999999999999999999999874
No 438
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.58 E-value=0.0047 Score=67.30 Aligned_cols=41 Identities=34% Similarity=0.611 Sum_probs=33.3
Q ss_pred cCCCCCceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCC
Q psy8969 376 KGTTQGKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGG 416 (1230)
Q Consensus 376 ~~~~~~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~ 416 (1230)
-|..+|.+++++||||+|||++|..+|... |.+.+.++..+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 366788999999999999999999888654 55677777755
No 439
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.56 E-value=0.0015 Score=68.21 Aligned_cols=27 Identities=30% Similarity=0.632 Sum_probs=24.2
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCCCeE
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNREYF 410 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~~~~ 410 (1230)
|+|.||||+||||+|+.||+.++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 468999999999999999999997664
No 440
>PRK14531 adenylate kinase; Provisional
Probab=96.56 E-value=0.002 Score=68.91 Aligned_cols=33 Identities=36% Similarity=0.596 Sum_probs=27.7
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM 417 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~ 417 (1230)
.|+++||||+||||+|+.||+.+|.+++ +.|++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~ 36 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDL 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccH
Confidence 5789999999999999999999997764 44444
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.55 E-value=0.0039 Score=70.76 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.4
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCC
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNRE 408 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~ 408 (1230)
..++++||||+|||||.++||..+...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence 678999999999999999999998643
No 442
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.55 E-value=0.0034 Score=73.66 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=27.7
Q ss_pred cCCCCCceEEEeCCCCCCchHHHHHHHHHhCC
Q psy8969 376 KGTTQGKILCFYGPPGVGKTSIAKSIARALNR 407 (1230)
Q Consensus 376 ~~~~~~~~llL~GPPG~GKTslak~iA~~l~~ 407 (1230)
....+|.-.+++||||||||+|++.||+.+..
T Consensus 128 ~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 128 APIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred eecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34567888999999999999999999998854
No 443
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.54 E-value=0.011 Score=65.62 Aligned_cols=40 Identities=13% Similarity=0.308 Sum_probs=32.1
Q ss_pred cCCCCCceEEEeCCCCCCchHHHHHHHHH---hCCCeEEEecC
Q psy8969 376 KGTTQGKILCFYGPPGVGKTSIAKSIARA---LNREYFRFSVG 415 (1230)
Q Consensus 376 ~~~~~~~~llL~GPPG~GKTslak~iA~~---l~~~~~~~~~~ 415 (1230)
.|.++|.+++++||||+|||++|..++.. -|.+.+.+++.
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 46788999999999999999999998654 26666666654
No 444
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.53 E-value=0.0068 Score=65.01 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
.+..+++.||+|+||||++++|+..+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 467899999999999999999999875
No 445
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.53 E-value=0.0032 Score=63.67 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=27.1
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNRE 408 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~ 408 (1230)
..+.+++|.|+.|+|||+++|.+++.+|.+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 456799999999999999999999999854
No 446
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.53 E-value=0.0023 Score=70.92 Aligned_cols=35 Identities=26% Similarity=0.554 Sum_probs=29.0
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcc
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS 418 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~ 418 (1230)
..|+|+||||+||||+|+.||+.+|.++ ++.|++.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~--is~gdll 41 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKH--INMGNIL 41 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcE--EECChHH
Confidence 3488999999999999999999999766 5555554
No 447
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.52 E-value=0.0053 Score=66.30 Aligned_cols=121 Identities=22% Similarity=0.214 Sum_probs=54.1
Q ss_pred eEEEeCCCCCCchHHHHHH-HH-Hh--CCCeEEEecCCcchhHHHhhcccccc-----------ccCchhHHHHHHhhcC
Q psy8969 383 ILCFYGPPGVGKTSIAKSI-AR-AL--NREYFRFSVGGMSDVAEIKGHRRTYV-----------GAMPGKVIQCMKKTKT 447 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~i-A~-~l--~~~~~~~~~~~~~d~~~i~g~~~~~~-----------g~~~g~i~~~~~~~~~ 447 (1230)
|.++.|.||+|||+.|-.. .. ++ |++.+. ++.|+.- ..+.......+ +.....-........
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNI-EKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLP- 78 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S---EEEE--TTT-S-----S--SSSEEGGGHHHHTTSG-
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcch-hhhhhhccccccccccccccccchhhhhhhhhhcccC-
Confidence 5789999999999988544 33 22 777655 6655541 11111000000 000001111111111
Q ss_pred CCCEEEEecccccCCCCCCC--hhhHHHhhcChhhhhhhhhhccCccccCCceEEEEecCCCCCCCHhhhcccce
Q psy8969 448 ENPLVLIDEVDKIGKGYSGD--PASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEM 520 (1230)
Q Consensus 448 ~~pvillDEIDk~~~~~~~~--~~~all~~ld~~q~~~f~d~~~~~~~d~s~v~~I~TaN~~~~I~~~L~~R~~~ 520 (1230)
.+.||+|||+..+.+.+... .....++.|.. ..| .++-+|++|-.+..|++.+++..+.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~------hRh--------~g~diiliTQ~~~~id~~ir~lve~ 139 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQ------HRH--------YGWDIILITQSPSQIDKFIRDLVEY 139 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGG------CCC--------TT-EEEEEES-GGGB-HHHHCCEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHH------hCc--------CCcEEEEEeCCHHHHhHHHHHHHhe
Confidence 56799999999986554331 12222333321 112 1355777888899999999987764
No 448
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.52 E-value=0.0042 Score=67.26 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=24.6
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhC---CCeEEEe
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALN---REYFRFS 413 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~---~~~~~~~ 413 (1230)
.++.++.||||||||++.+.++..+. ..++-+.
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 46788999999999999999887764 3444444
No 449
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.52 E-value=0.0065 Score=68.91 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=43.1
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHhCCCeEE-EecCCcchhHHHhhccccccccCch-hHHHHHHhhcCCC-CEEEEeccc
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARALNREYFR-FSVGGMSDVAEIKGHRRTYVGAMPG-KVIQCMKKTKTEN-PLVLIDEVD 458 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l~~~~~~-~~~~~~~d~~~i~g~~~~~~g~~~g-~i~~~~~~~~~~~-pvillDEID 458 (1230)
..+++.||+|+||||+.+++...+..+-.+ +.+.+-.+ ..+.+.....+....+ ....+++.+...+ .+|+++||.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E-~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVE-YQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCce-ecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 468899999999999999998887643222 23322211 1122222222222211 2334444444444 499999986
No 450
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.52 E-value=0.0052 Score=72.44 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=45.4
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCC--eEEEecCCcchhHHHh--hc----cccccccCchhHHHHHHhhcCC-CCE
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNRE--YFRFSVGGMSDVAEIK--GH----RRTYVGAMPGKVIQCMKKTKTE-NPL 451 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~--~~~~~~~~~~d~~~i~--g~----~~~~~g~~~g~i~~~~~~~~~~-~pv 451 (1230)
+..+++.||+|+||||+.+++...+..+ ..-+.+. |..|+. +. ...-+|.....+.++++.+-.. +++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE---dp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE---DPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDV 198 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc---CChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCE
Confidence 4678899999999999999999987643 1122222 222221 11 1112343333455566655544 459
Q ss_pred EEEeccc
Q psy8969 452 VLIDEVD 458 (1230)
Q Consensus 452 illDEID 458 (1230)
|++|||-
T Consensus 199 i~vgEir 205 (343)
T TIGR01420 199 ILIGEMR 205 (343)
T ss_pred EEEeCCC
Confidence 9999984
No 451
>PLN02199 shikimate kinase
Probab=96.51 E-value=0.0028 Score=71.98 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=30.8
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEe
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFS 413 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~ 413 (1230)
++..|.|+|++|+|||++++.+|+.+|++|+..+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 4667999999999999999999999999998655
No 452
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.0025 Score=71.78 Aligned_cols=47 Identities=30% Similarity=0.541 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhh-cCCCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 360 EDVKKRILEFIAVSQL-KGTTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 360 ~~vK~~i~e~l~~~~~-~~~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
+.++++...|-+.... -....|..+-|.||.|+|||||-|+||....
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~ 53 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET 53 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC
Confidence 4455555555444322 2345788999999999999999999998765
No 453
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.51 E-value=0.0019 Score=69.20 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=25.1
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCCCeEE
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNREYFR 411 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~~~~~ 411 (1230)
|++.||||+|||++|+.||+.+|.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999876644
No 454
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0045 Score=67.53 Aligned_cols=27 Identities=33% Similarity=0.651 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.++.|.||+|+|||||.++||..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999865
No 455
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.49 E-value=0.0059 Score=67.72 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=30.3
Q ss_pred HHhhhc-CCCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 371 AVSQLK-GTTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 371 ~~~~~~-~~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
||..++ ..++|.++.|.||.|.||||+.|.+...+-
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~ 75 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL 75 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc
Confidence 555554 568899999999999999999999987764
No 456
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.49 E-value=0.0034 Score=68.14 Aligned_cols=27 Identities=33% Similarity=0.663 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.+++|+||+|+|||||.++||..+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999874
No 457
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.48 E-value=0.0045 Score=68.44 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=25.2
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||+|+|||||+++||..+
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999864
No 458
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.48 E-value=0.004 Score=67.78 Aligned_cols=27 Identities=41% Similarity=0.688 Sum_probs=24.6
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.++++.||+|+|||||.++||..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 578899999999999999999999764
No 459
>PLN02200 adenylate kinase family protein
Probab=96.47 E-value=0.002 Score=71.69 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcc
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS 418 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~ 418 (1230)
..+.+|++.||||+||||+|+.||+.+|.+ .++.|++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 345678999999999999999999999865 46665554
No 460
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.46 E-value=0.0081 Score=64.84 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=24.8
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.+++|.||+|+|||||+++||..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 568899999999999999999999975
No 461
>PRK10536 hypothetical protein; Provisional
Probab=96.46 E-value=0.0099 Score=66.48 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=44.3
Q ss_pred HhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHH-h-C
Q psy8969 329 WLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARA-L-N 406 (1230)
Q Consensus 329 ~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~-l-~ 406 (1230)
-+..+||...+.++.|... +-+.......++.++. ....+++.||+|||||+||.++|.. + +
T Consensus 38 ~~~~~p~~~~~~~~~~~~~--------i~p~n~~Q~~~l~al~--------~~~lV~i~G~aGTGKT~La~a~a~~~l~~ 101 (262)
T PRK10536 38 QMGGVEAIGMARDSRDTSP--------ILARNEAQAHYLKAIE--------SKQLIFATGEAGCGKTWISAAKAAEALIH 101 (262)
T ss_pred hhccCCccccchhhcCCcc--------ccCCCHHHHHHHHHHh--------cCCeEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3466898775655555433 3344455555555442 1348889999999999999999984 4 4
Q ss_pred CCeEEEe
Q psy8969 407 REYFRFS 413 (1230)
Q Consensus 407 ~~~~~~~ 413 (1230)
..|-++-
T Consensus 102 ~~~~kIi 108 (262)
T PRK10536 102 KDVDRII 108 (262)
T ss_pred CCeeEEE
Confidence 4444433
No 462
>PRK06547 hypothetical protein; Provisional
Probab=96.45 E-value=0.0026 Score=67.43 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=29.3
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCCeEEE
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRF 412 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~ 412 (1230)
..+.+|++.||+|+||||+|+.||+.++.+++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 4566788899999999999999999999887654
No 463
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.45 E-value=0.0063 Score=65.91 Aligned_cols=78 Identities=28% Similarity=0.412 Sum_probs=42.5
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHh---CCCeEEEecCCcc--------hhHHHhhccc--cccccCchhHH-HHHHhhc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARAL---NREYFRFSVGGMS--------DVAEIKGHRR--TYVGAMPGKVI-QCMKKTK 446 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l---~~~~~~~~~~~~~--------d~~~i~g~~~--~~~g~~~g~i~-~~~~~~~ 446 (1230)
|.+++|+||+||||||++--||..+ ++..--+++...+ ..+++.|..- .+....|..+. +++....
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5789999999999998877777655 3333334433222 1233333221 11122244443 4555544
Q ss_pred C-CCCEEEEeccc
Q psy8969 447 T-ENPLVLIDEVD 458 (1230)
Q Consensus 447 ~-~~pvillDEID 458 (1230)
. ...+||||-.-
T Consensus 81 ~~~~D~vlIDT~G 93 (196)
T PF00448_consen 81 KKGYDLVLIDTAG 93 (196)
T ss_dssp HTTSSEEEEEE-S
T ss_pred hcCCCEEEEecCC
Confidence 4 34799999754
No 464
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.44 E-value=0.0018 Score=61.50 Aligned_cols=72 Identities=26% Similarity=0.599 Sum_probs=21.1
Q ss_pred cCCCCCCCCCCchhhhccccccCCC-CcccCCcccccccccCchhhhhhcccccCCCCEeecccccCccccchhhHHHHh
Q psy8969 1138 VCPECKKTFSSAHHMKVHLRIHSGI-RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 1216 (1230)
Q Consensus 1138 ~C~~CgK~F~s~s~Lk~H~R~HTGE-KPykCpve~CgKsF~~ks~Lk~H~RtHTGEKPy~C~~e~CGKsF~~ks~LkrH~ 1216 (1230)
+|..|+..|.+...|..|+....+- -+ ....+.....+..+.+.-.. .+|.|. .|++.|.+...|..||
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~-------~~~~l~~~~~~~~~~~~~~~-~~~~C~--~C~~~f~s~~~l~~Hm 70 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIP-------DQKYLVDPNRLLNYLRKKVK-ESFRCP--YCNKTFRSREALQEHM 70 (100)
T ss_dssp --------------------------------------------------------SSEEBS--SSS-EESSHHHHHHHH
T ss_pred Cccccccccccccccccccccccccccc-------cccccccccccccccccccC-CCCCCC--ccCCCCcCHHHHHHHH
Confidence 4999999999999999999744432 22 12233344455555543222 279995 7999999999999999
Q ss_pred hhc
Q psy8969 1217 RTH 1219 (1230)
Q Consensus 1217 R~H 1219 (1230)
+.|
T Consensus 71 ~~~ 73 (100)
T PF12756_consen 71 RSK 73 (100)
T ss_dssp HHT
T ss_pred cCc
Confidence 974
No 465
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.44 E-value=0.005 Score=72.94 Aligned_cols=28 Identities=25% Similarity=0.582 Sum_probs=25.4
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.+++|.||+|+|||||.++|+..+
T Consensus 16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 16 IAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3578999999999999999999999875
No 466
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.44 E-value=0.015 Score=75.32 Aligned_cols=76 Identities=29% Similarity=0.407 Sum_probs=43.0
Q ss_pred ceEEEeCCCCCCchHHHHHHHHHh-----CC--CeE---EEe-----cCCcchhHHHhhccccccccCchhHHHHHHhhc
Q psy8969 382 KILCFYGPPGVGKTSIAKSIARAL-----NR--EYF---RFS-----VGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK 446 (1230)
Q Consensus 382 ~~llL~GPPG~GKTslak~iA~~l-----~~--~~~---~~~-----~~~~~d~~~i~g~~~~~~g~~~g~i~~~~~~~~ 446 (1230)
..+++.||.|.|||++.+.|+... |. |.- .+. ...+.+...+...-.+|.+.+- .+...+..+
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~-~~~~il~~~- 400 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMK-NISAILSKT- 400 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHH-HHHHHHHhc-
Confidence 689999999999999999998762 21 110 010 1122222223322333444332 233334333
Q ss_pred CCCCEEEEecccc
Q psy8969 447 TENPLVLIDEVDK 459 (1230)
Q Consensus 447 ~~~pvillDEIDk 459 (1230)
..+.+|||||+-.
T Consensus 401 ~~~sLvLlDE~g~ 413 (771)
T TIGR01069 401 TENSLVLFDELGA 413 (771)
T ss_pred CCCcEEEecCCCC
Confidence 4678999999764
No 467
>PRK05439 pantothenate kinase; Provisional
Probab=96.42 E-value=0.0076 Score=69.55 Aligned_cols=82 Identities=23% Similarity=0.310 Sum_probs=49.8
Q ss_pred HHHHHHhccCCCCCCccchhhhHHHHhhcCCCCCcccccccHHHHhhhhcccccChHHHHHHHHHHHHHhhhcCCCCCce
Q psy8969 304 NEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKI 383 (1230)
Q Consensus 304 ~~e~~~l~~~~~~~~e~~v~~~yl~~~~~lpw~~~~~~~~~~~~~~~~l~~d~~G~~~vK~~i~e~l~~~~~~~~~~~~~ 383 (1230)
+.||.+|..++..-+---|..-||-. .++-....+ +.......+.+|+. ......+-+
T Consensus 31 ~~~~~~l~~~~~~~~~~~v~~iy~pl----------------arli~~~~~---~~~~~~~~~~~fl~---~~~~~~~~i 88 (311)
T PRK05439 31 EEELERLRGLNDPISLEEVAEIYLPL----------------SRLLNLYVA---ANQRLQAALEQFLG---KNGQKVPFI 88 (311)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHH----------------HHHHHHHHH---hhHHHHHHHHHHhc---ccCCCCCEE
Confidence 56777777777665555566666532 222211111 22233333334432 123345678
Q ss_pred EEEeCCCCCCchHHHHHHHHHhCC
Q psy8969 384 LCFYGPPGVGKTSIAKSIARALNR 407 (1230)
Q Consensus 384 llL~GPPG~GKTslak~iA~~l~~ 407 (1230)
|.+.||||+||||+|+.|+..++.
T Consensus 89 IgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 89 IGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998863
No 468
>KOG2004|consensus
Probab=96.41 E-value=0.0015 Score=79.98 Aligned_cols=125 Identities=66% Similarity=0.994 Sum_probs=110.8
Q ss_pred ccccCccceeeccccCCCCcCCCCCCccCCCCCccccccccchhhhccchhhhhhcccccccCCCcccccccccccccCC
Q psy8969 935 VHFSGSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNFLSTIEPDNTFLNTRHLHLHVPE 1014 (1230)
Q Consensus 935 ~~~~~~~~~~e~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~~~~tf~~~~hl~~H~~~ 1014 (1230)
..+++++.++++....+. .++++..+|++++.|.++.+...+..+.+....++.+.|....++++|.++
T Consensus 728 T~mGG~~lyvEts~~~~~-----------~~g~l~~TGqLGDVMKESa~iA~t~ar~~~~~~~p~n~~l~~~~IHlH~Pe 796 (906)
T KOG2004|consen 728 TAMGGSTLYVETSLMRGL-----------GDGSLEITGQLGDVMKESAQIAYTWARAFLSKKEPENKFLENSDIHLHVPE 796 (906)
T ss_pred ecCCCeEEEEEEEEeccC-----------CCCceEEecchHHHHHHHHHHHHHHHHHHHHhhCcccchhcccceeeeccC
Confidence 345667777776655432 226788899999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCccchhhhhhhcccCCCccccccccccccccccccccCCcccccccc
Q psy8969 1015 GAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAL 1070 (1230)
Q Consensus 1015 ~~~~~~~~s~~~~~~~~~~s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 1070 (1230)
+.+..+.|+++.+...+..+....+++....+++|+.++.|+.+|.++..++..+.
T Consensus 797 GAtpKDGPSAGvTmvTsLlSLa~~kpVr~d~AMTGEvtLtGkVLpiGGiKEK~iAA 852 (906)
T KOG2004|consen 797 GATPKDGPSAGVTMVTALLSLALGKPVRQDLAMTGEVTLTGKVLPVGGIKEKTIAA 852 (906)
T ss_pred CCCCCcCCcccchhHHHHHHHhhCCcchhhhHhhcccccccceeccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886543
No 469
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0086 Score=65.89 Aligned_cols=29 Identities=38% Similarity=0.690 Sum_probs=25.7
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
...|..++|+||+||||||+-|.|-+.+.
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLie 52 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIE 52 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccC
Confidence 46788899999999999999999988764
No 470
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.0054 Score=69.83 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=25.3
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||+|+|||||.++||..+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999885
No 471
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.40 E-value=0.007 Score=70.29 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=44.1
Q ss_pred CCceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcchhHHHhhcccccc---------ccCchhHHHHHHhhcCCC-
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYV---------GAMPGKVIQCMKKTKTEN- 449 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d~~~i~g~~~~~~---------g~~~g~i~~~~~~~~~~~- 449 (1230)
.+..+++.||+|+||||++++|+..+....-.+.+. |..|+.-..+.++ |...-.+.+.+..+...+
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie---d~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p 219 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE---DTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP 219 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc---CccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC
Confidence 346899999999999999999998875332222322 3223211111111 111223444555554444
Q ss_pred CEEEEeccc
Q psy8969 450 PLVLIDEVD 458 (1230)
Q Consensus 450 pvillDEID 458 (1230)
++|++||+-
T Consensus 220 d~ii~gE~r 228 (308)
T TIGR02788 220 DRIILGELR 228 (308)
T ss_pred CeEEEeccC
Confidence 599999986
No 472
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.39 E-value=0.0024 Score=67.54 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=35.6
Q ss_pred cChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC---eEEEecC
Q psy8969 357 YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE---YFRFSVG 415 (1230)
Q Consensus 357 ~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~---~~~~~~~ 415 (1230)
+|=++..++|..++. ......++.++++||||+|||+|.+.+...+..+ ++.+.+.
T Consensus 3 vgR~~e~~~l~~~l~---~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~ 61 (185)
T PF13191_consen 3 VGREEEIERLRDLLD---AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCD 61 (185)
T ss_dssp TT-HHHHHHHHHTTG---GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEE
T ss_pred CCHHHHHHHHHHHHH---HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 566677777777763 3444566899999999999999999888887655 5555543
No 473
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.39 E-value=0.0036 Score=66.30 Aligned_cols=30 Identities=33% Similarity=0.536 Sum_probs=26.7
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhCCC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALNRE 408 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~~~ 408 (1230)
.+|..|+|.||||+||||+|+.|++.+..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~ 34 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLK 34 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 467789999999999999999999999743
No 474
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.011 Score=63.08 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=26.3
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
...|.+.-|.||.|.||||+-|.||..|-
T Consensus 25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~ 53 (245)
T COG4555 25 AEEGEITGLLGENGAGKTTLLRMIATLLI 53 (245)
T ss_pred eccceEEEEEcCCCCCchhHHHHHHHhcc
Confidence 35788999999999999999999999875
No 475
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.36 E-value=0.006 Score=65.86 Aligned_cols=28 Identities=25% Similarity=0.597 Sum_probs=25.5
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.+++|.||+|+|||||.+.||..+
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999987
No 476
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.36 E-value=0.0057 Score=67.16 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.++.|+||+|+|||||.++|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999875
No 477
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.36 E-value=0.0049 Score=67.67 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.0
Q ss_pred CceEEEeCCCCCCchHHHHHHHH
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIAR 403 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~ 403 (1230)
++.++|.||.|+|||++.|+|+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999984
No 478
>PF13479 AAA_24: AAA domain
Probab=96.35 E-value=0.0061 Score=66.92 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=43.1
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcch-hHHHhhccccccccCchhHHHHHHh---hcCCCCEEEEec
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSD-VAEIKGHRRTYVGAMPGKVIQCMKK---TKTENPLVLIDE 456 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~d-~~~i~g~~~~~~g~~~g~i~~~~~~---~~~~~pvillDE 456 (1230)
+-.+|+|||||+|||++|..+ +.+++ |+..+-.+ ...+.......+- ....+.+++.. ....-.+|+||-
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~-id~E~g~~~~~~~~~~~~i~i~-s~~~~~~~~~~l~~~~~~y~tiVIDs 76 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLF-IDTENGSDSLKFLDDGDVIPIT-SWEDFLEALDELEEDEADYDTIVIDS 76 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEE-EEeCCCccchhhhcCCCeeCcC-CHHHHHHHHHHHHhccCCCCEEEEEC
Confidence 456899999999999999887 66653 45432211 1111111111111 44556665543 233445999999
Q ss_pred cccc
Q psy8969 457 VDKI 460 (1230)
Q Consensus 457 IDk~ 460 (1230)
|+.+
T Consensus 77 is~~ 80 (213)
T PF13479_consen 77 ISWL 80 (213)
T ss_pred HHHH
Confidence 8875
No 479
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.0077 Score=67.19 Aligned_cols=29 Identities=34% Similarity=0.665 Sum_probs=25.2
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..+|.++.++||.|.|||||.|+|...+.
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll~ 55 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLLK 55 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35678999999999999999999998543
No 480
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.33 E-value=0.0067 Score=66.26 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=25.3
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.+++|.||+|+|||||.++||..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999875
No 481
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.32 E-value=0.005 Score=67.84 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=24.8
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.+++|.||+|+|||||.++||..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999875
No 482
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0065 Score=66.79 Aligned_cols=27 Identities=30% Similarity=0.636 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.++.|.||+|+|||||.++|+..+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999999875
No 483
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.32 E-value=0.0046 Score=63.93 Aligned_cols=31 Identities=26% Similarity=0.583 Sum_probs=26.3
Q ss_pred eEEEeCCCCCCchHHHHHHHHHh---CCCeEEEe
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARAL---NREYFRFS 413 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l---~~~~~~~~ 413 (1230)
+++|.|+||+||||+|+.|+..+ +.+.+.++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 47899999999999999999998 65555554
No 484
>PRK14528 adenylate kinase; Provisional
Probab=96.32 E-value=0.0033 Score=67.49 Aligned_cols=33 Identities=36% Similarity=0.628 Sum_probs=27.6
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCc
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM 417 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~ 417 (1230)
.|++.||||+||||+|+.||+.+|.+.+ +.+.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~i--s~~~~ 35 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQI--STGDI 35 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee--eCCHH
Confidence 4789999999999999999999997764 44443
No 485
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.31 E-value=0.0076 Score=66.07 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=24.9
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||+|+|||||.++||..+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3578899999999999999999999864
No 486
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.30 E-value=0.0027 Score=53.93 Aligned_cols=51 Identities=29% Similarity=0.671 Sum_probs=40.2
Q ss_pred cccCCcccccccccCchhhhhhcc-cccCC-CCEeecccccCccccchhhHHHHhhhccC
Q psy8969 1164 PYKCPVEYCEKAFSTQYSRKAHIR-THTGE-KPYRCAHEFCSKSFKTSGDLQKHVRTHTD 1221 (1230)
Q Consensus 1164 PykCpve~CgKsF~~ks~Lk~H~R-tHTGE-KPy~C~~e~CGKsF~~ks~LkrH~R~HtG 1221 (1230)
-|.||+ |++.| +...|..|.. .|..+ +.+.|+ +|...++ .+|.+|++.+|+
T Consensus 2 ~f~CP~--C~~~~-~~~~L~~H~~~~H~~~~~~v~CP--iC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPY--CGKGF-SESSLVEHCEDEHRSESKNVVCP--ICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCC--CCCcc-CHHHHHHHHHhHCcCCCCCccCC--Cchhhhh--hHHHHHHHHhcC
Confidence 389985 99954 4678999965 67765 579995 8999765 499999998774
No 487
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.30 E-value=0.007 Score=68.44 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=25.2
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.+++|.||.|+|||||.++|+..+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999875
No 488
>PRK04182 cytidylate kinase; Provisional
Probab=96.29 E-value=0.0033 Score=66.38 Aligned_cols=29 Identities=38% Similarity=0.678 Sum_probs=26.9
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEE
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFR 411 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~ 411 (1230)
+|++.|+||+||||+|+.||+.+|.+|+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999998864
No 489
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.29 E-value=0.0063 Score=71.97 Aligned_cols=28 Identities=36% Similarity=0.773 Sum_probs=25.2
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
..|.+++|+||+|+|||||.++||....
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4688999999999999999999998753
No 490
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.29 E-value=0.0057 Score=66.47 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.5
Q ss_pred CCceEEEeCCCCCCchHHHHHHHH
Q psy8969 380 QGKILCFYGPPGVGKTSIAKSIAR 403 (1230)
Q Consensus 380 ~~~~llL~GPPG~GKTslak~iA~ 403 (1230)
.+..++|.||.|+||||+.++||.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 356899999999999999999994
No 491
>PRK02496 adk adenylate kinase; Provisional
Probab=96.29 E-value=0.0033 Score=67.12 Aligned_cols=29 Identities=38% Similarity=0.572 Sum_probs=25.5
Q ss_pred eEEEeCCCCCCchHHHHHHHHHhCCCeEE
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARALNREYFR 411 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l~~~~~~ 411 (1230)
.++++||||+||||+|+.||+.+|.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 37899999999999999999999976643
No 492
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=96.28 E-value=0.005 Score=73.87 Aligned_cols=28 Identities=32% Similarity=0.693 Sum_probs=25.4
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||+|+|||||.|+|+..+
T Consensus 26 i~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 26 VREGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3578999999999999999999999875
No 493
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0068 Score=72.17 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
.+|.+++|.||+|+|||||.++||..+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 567899999999999999999999875
No 494
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.012 Score=63.53 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=23.6
Q ss_pred CCCceEEEeCCCCCCchHHHHHHHHH
Q psy8969 379 TQGKILCFYGPPGVGKTSIAKSIARA 404 (1230)
Q Consensus 379 ~~~~~llL~GPPG~GKTslak~iA~~ 404 (1230)
.+|.++.|.||+|+|||||.++||..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 56789999999999999999999964
No 495
>KOG2228|consensus
Probab=96.27 E-value=0.02 Score=65.19 Aligned_cols=167 Identities=20% Similarity=0.395 Sum_probs=96.0
Q ss_pred ccChHHHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHH-HHHH--HhCCCeEEEecCCcch--hHHHhhccccc
Q psy8969 356 HYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAK-SIAR--ALNREYFRFSVGGMSD--VAEIKGHRRTY 430 (1230)
Q Consensus 356 ~~G~~~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak-~iA~--~l~~~~~~~~~~~~~d--~~~i~g~~~~~ 430 (1230)
..|+.+-.+.|.+++......|.. -.++++||-|.|||.+.- .++. ..|-.|+.+.+.|.-- -.-++|-.+.+
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEs--nsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGES--NSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCC--CceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 456677777788888665565543 458899999999997643 4444 7888898877766542 22344544443
Q ss_pred c----------ccCc---hhHHHHHHhhcC--CCCEEE-EecccccCCCCCCChhhHHHhhcChhhhhhhhhhccCcccc
Q psy8969 431 V----------GAMP---GKVIQCMKKTKT--ENPLVL-IDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD 494 (1230)
Q Consensus 431 ~----------g~~~---g~i~~~~~~~~~--~~pvil-lDEIDk~~~~~~~~~~~all~~ld~~q~~~f~d~~~~~~~d 494 (1230)
- |+.. ..+.++++.-.. ..+||| +||||-+... .-..-|..++|-.|...
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h---~rQtllYnlfDisqs~r----------- 169 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH---SRQTLLYNLFDISQSAR----------- 169 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc---hhhHHHHHHHHHHhhcC-----------
Confidence 1 2221 344445544222 234666 7999987532 11334555666554322
Q ss_pred CCceEEEEecCCCC---CCCHhhhcccc--eeec-CCCCHHHHHHHHHHhh
Q psy8969 495 LSRVLFICTANVID---TIPEPLRDRME--MIDV-SGYVAEEKVAIAAQYL 539 (1230)
Q Consensus 495 ~s~v~~I~TaN~~~---~I~~~L~~R~~--~i~~-~~~~~~e~~~i~~~~l 539 (1230)
-.|.+|.-|-+.+ -+..-..+||- +|.+ +.....+-+.+.++-+
T Consensus 170 -~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 170 -APICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred -CCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 3566664444444 34455567885 3444 4445566666665544
No 496
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.27 E-value=0.0066 Score=70.52 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=25.5
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHhC
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARALN 406 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l~ 406 (1230)
...|..+.|+||+|||||||-|.||....
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678899999999999999999998754
No 497
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.25 E-value=0.0075 Score=68.53 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCceEEEeCCCCCCchHHHHHHHHHhCCC-eEEEecCCcchhHHHhhcccccc--ccCchh
Q psy8969 361 DVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE-YFRFSVGGMSDVAEIKGHRRTYV--GAMPGK 437 (1230)
Q Consensus 361 ~vK~~i~e~l~~~~~~~~~~~~~llL~GPPG~GKTslak~iA~~l~~~-~~~~~~~~~~d~~~i~g~~~~~~--g~~~g~ 437 (1230)
...+.+.+++.... ..+..+++.||+|+||||+.+++...+... ..-+.+.+..+ ..+.+.....+ ......
T Consensus 111 ~~~~~~~~~l~~~v----~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E-~~l~~~~~~~~~~~~~~~~ 185 (270)
T PF00437_consen 111 SIPEEIAEFLRSAV----RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE-LRLPGPNQIQIQTRRDEIS 185 (270)
T ss_dssp HCHHHHHHHHHHCH----HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS--S--SCSSEEEEEEETTTBS
T ss_pred hhHHHHHHHHhhcc----ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccc-eeecccceEEEEeecCccc
Confidence 33456666664321 224678999999999999999999998766 33333333222 22222211111 123345
Q ss_pred HHHHHHhhcCCCC-EEEEeccc
Q psy8969 438 VIQCMKKTKTENP-LVLIDEVD 458 (1230)
Q Consensus 438 i~~~~~~~~~~~p-villDEID 458 (1230)
..+++..+...+| +|+++||.
T Consensus 186 ~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 186 YEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp HHHHHHHHTTS--SEEEESCE-
T ss_pred HHHHHHHHhcCCCCcccccccC
Confidence 5666666655554 99999986
No 498
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0085 Score=65.49 Aligned_cols=28 Identities=36% Similarity=0.638 Sum_probs=25.1
Q ss_pred CCCCceEEEeCCCCCCchHHHHHHHHHh
Q psy8969 378 TTQGKILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 378 ~~~~~~llL~GPPG~GKTslak~iA~~l 405 (1230)
..+|.++.|.||.|+|||||.++|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999999865
No 499
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.23 E-value=0.0057 Score=54.65 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=21.2
Q ss_pred eEEEeCCCCCCchHHHHHHHHHh
Q psy8969 383 ILCFYGPPGVGKTSIAKSIARAL 405 (1230)
Q Consensus 383 ~llL~GPPG~GKTslak~iA~~l 405 (1230)
++++.|+||+|||++++.+++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997
No 500
>PLN02674 adenylate kinase
Probab=96.22 E-value=0.0064 Score=67.91 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=29.9
Q ss_pred CceEEEeCCCCCCchHHHHHHHHHhCCCeEEEecCCcc
Q psy8969 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMS 418 (1230)
Q Consensus 381 ~~~llL~GPPG~GKTslak~iA~~l~~~~~~~~~~~~~ 418 (1230)
.+.|+|.||||+||||+|+.||+.+|.+ .++.|++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence 4668899999999999999999999854 46666554
Done!