RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8969
(1230 letters)
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 696 bits (1800), Expect = 0.0
Identities = 233/544 (42%), Positives = 340/544 (62%), Gaps = 39/544 (7%)
Query: 275 EKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLP 334
+K+ K + E+I++ +P V E +EL + + S S+E +V RNY+DWL +LP
Sbjct: 2 DKEGKTGEVQTLTEKIEEAGMPDHVKETALKELNRYEKIPSSSAESSVIRNYIDWLVALP 61
Query: 335 WGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGK 394
W ++++ LDL +A ++LD++H+G+E VK+RILE++AV +L + +G ILC GPPGVGK
Sbjct: 62 WTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGK 121
Query: 395 TSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLI 454
TS+AKSIA++L R++ R S+GG+ D +EI+GHRRTYVGAMPG++IQ MKK NP+ L+
Sbjct: 122 TSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLL 181
Query: 455 DEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPL 514
DE+DK+ + GDP+SA+LE+LDPEQN++F DHY++ DLS+VLFI TAN + TIP PL
Sbjct: 182 DEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL 241
Query: 515 RDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGV 574
RDRME+I+++GY EK+ I +L+P+ +KE GL + L AI +I+ Y RE+GV
Sbjct: 242 RDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301
Query: 575 RNLQKHIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVT--- 631
R+L++ + + RK A IV +E ++TVT NL DF+GK IF + + GVVT
Sbjct: 302 RSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRYGQAETEDQVGVVTGLA 361
Query: 632 -------------------RKVALT----IVKKESDK--VTVTNDNLSDFVGKPIFSHDR 666
K+ LT V +ES + + + +P F
Sbjct: 362 YTTVGGDTLSIEVSLSPGKGKLILTGKLGDVMRESAQAAFSYVRSKTEELGIEPDFHEKY 421
Query: 667 LFEI-TPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGK 725
I P G AV KDGP+AGIT+ TALVS TG+ + + + MTGEI+L G+
Sbjct: 422 DIHIHVPEG----------AVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGR 471
Query: 726 VLPVGGIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFE 785
VLP+GG+KEK + A R G+ TI+ P++N+KD D+PE +REGL S +V +
Sbjct: 472 VLPIGGLKEKALGAHRAGLTTIIAPKDNEKDIEDIPESVREGLTFILASHLDEVLEHALV 531
Query: 786 HTSE 789
+
Sbjct: 532 GEKK 535
Score = 172 bits (438), Expect = 2e-45
Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 13/131 (9%)
Query: 939 GSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNFLSTIEP 998
G TL IE S+ G L LTG LGDVM+ESA + + R+ +
Sbjct: 367 GDTLSIEVSLSPGK-------------GKLILTGKLGDVMRESAQAAFSYVRSKTEELGI 413
Query: 999 DNTFLNTRHLHLHVPEGAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVL 1058
+ F +H+HVPEGAV KDGP+AGIT+ TALVS TG+ + + + MTGEI+L G+VL
Sbjct: 414 EPDFHEKYDIHIHVPEGAVPKDGPAAGITMATALVSALTGRAVSREVGMTGEITLRGRVL 473
Query: 1059 PVGGIKEKTIA 1069
P+GG+KEK +
Sbjct: 474 PIGGLKEKALG 484
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 232 bits (593), Expect = 3e-65
Identities = 90/541 (16%), Positives = 170/541 (31%), Gaps = 93/541 (17%)
Query: 306 ELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKR 365
EL LE N + + ++P + AK + +K
Sbjct: 82 ELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKST 141
Query: 366 ILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKG 425
+L + G T+ + G A AL +G + G
Sbjct: 142 VLVPKLLVDNCGRTKAPFIDATGA-----------HAGAL--------LGDVRHDPFQSG 182
Query: 426 HRRTYVGAM--PGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDP--EQN 481
T PG + + ++ IDE+ + +A+ E P Q+
Sbjct: 183 GLGTPAHERVEPGMI------HRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQS 236
Query: 482 ANFLDHYLDVPVDLSRVLFICTAN--VIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQY- 538
+ + + N +D + LR R+ Y+
Sbjct: 237 EMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRR 296
Query: 539 ----LIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRN----LQKHIEKVTRKVAL 590
+ Q +K G P A++ +++ + +G + + + + R
Sbjct: 297 KLVQFVAQEVKRDGKIPH---FTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGD 353
Query: 591 TIVKKESDKVT------------VTNDNLSDFVGKPIFSHDRLFEITPP-GVVT------ 631
VKK V L+D+ + + + G V
Sbjct: 354 IAVKKGKKYVEREDVIEAVKMAKPLEKQLADWYIERKKEYQVIKTEGSEIGRVNGLAVIG 413
Query: 632 ---------RKVALTIVKKESDKVTVTN----------DNLSDFVGK--PIFSHDRLFEI 670
V KE K+ VT N+S + + +
Sbjct: 414 EQSGIVLPIEAVVAPAASKEEGKIIVTGKLGEIAKEAVQNVSAIIKRYKGEDISRYDIHV 473
Query: 671 TPPGVVMGLAWTAMAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVG 730
+G +A I++ TA++S G PI+Q++AMTG +S+ G+VLP+G
Sbjct: 474 QFLQT---------YEGVEGDAASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIG 524
Query: 731 GIKEKTIAAKRVGVHTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHTSER 790
G AA G+ +++P+ N+KD L + E + + V +V ++ E + ++
Sbjct: 525 GATPAIEAAIEAGIKMVIIPKSNEKDV-FLSKDKAEKIQIFPVETIDEVLEIALEESEKK 583
Query: 791 P 791
Sbjct: 584 R 584
Score = 133 bits (336), Expect = 3e-32
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 963 KSDGSLFLTGHLGDVMKESANISLTVARNFLSTIEPDNTFLNTRHLHLHVPEGAVKKDGP 1022
K +G + +TG LG++ KE+ + + + ++ +H+ + +G
Sbjct: 432 KEEGKIIVTGKLGEIAKEAVQNVSAIIKRYK------GEDISRYDIHVQFLQTYEGVEGD 485
Query: 1023 SAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEK 1066
+A I++ TA++S G PI+Q++AMTG +S+ G+VLP+GG
Sbjct: 486 AASISVATAVISALEGIPIRQDVAMTGSLSVRGEVLPIGGATPA 529
Score = 33.1 bits (76), Expect = 0.62
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 323 TRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGK 382
++ SL GI+ ++ K++D G E + +++ Q +
Sbjct: 11 ALAPREYGESLELGIEFTTTEEIEVPEKLIDQ-VIGQEHAVE-VIKT-------AANQKR 61
Query: 383 ILCFYGPPGVGKTSIAKSIARALNRE 408
+ G PG GK+ + +++A L E
Sbjct: 62 HVLLIGEPGTGKSMLGQAMAELLPTE 87
>2x36_A LON protease homolog, mitochondrial; hydrolase, catalytic DYAD,
transit peptide; 2.00A {Homo sapiens}
Length = 207
Score = 209 bits (534), Expect = 5e-62
Identities = 84/131 (64%), Positives = 98/131 (74%), Gaps = 4/131 (3%)
Query: 939 GSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNFLSTIEP 998
GSTLF+ETS+R+P DGSL +TG LG+VMKESA I+ T AR FL P
Sbjct: 23 GSTLFVETSLRRPQDKDAKG----DKDGSLEVTGQLGEVMKESARIAYTFARAFLMQHAP 78
Query: 999 DNTFLNTRHLHLHVPEGAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVL 1058
N +L T H+HLHVPEGA KDGPSAG TI TAL+SLA G+P++QNLAMTGE+SL GK+L
Sbjct: 79 ANDYLVTSHIHLHVPEGATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKIL 138
Query: 1059 PVGGIKEKTIA 1069
PVGGIKEKTIA
Sbjct: 139 PVGGIKEKTIA 149
Score = 187 bits (477), Expect = 2e-54
Identities = 68/106 (64%), Positives = 82/106 (77%)
Query: 685 AVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGV 744
A KDGPSAG TI TAL+SLA G+P++QNLAMTGE+SL GK+LPVGGIKEKTIAAKR GV
Sbjct: 96 ATPKDGPSAGCTIVTALLSLAMGRPVRQNLAMTGEVSLTGKILPVGGIKEKTIAAKRAGV 155
Query: 745 HTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHTSER 790
I++P ENKKDF DL +I EGL VHFV +R+++D+ F
Sbjct: 156 TCIVLPAENKKDFYDLAAFITEGLEVHFVEHYREIFDIAFPDEQAE 201
Score = 44.9 bits (107), Expect = 5e-05
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 665 DRLFEITPPGVVMGLAWTAMAVKKDGPSAGI-TITTALVSLATGKPIKQNLAMTGEISLV 723
+R++++TPPGVVMGLAWTAM G + + T +L +TG++
Sbjct: 2 ERMYDVTPPGVVMGLAWTAMG----GSTLFVETSLRRPQDKDAKGDKDGSLEVTGQL--- 54
Query: 724 GKVLPVGGIKEKTIAA 739
G+V+ KE A
Sbjct: 55 GEVM-----KESARIA 65
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic
DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus
jannaschii} SCOP: d.14.1.10
Length = 187
Score = 159 bits (405), Expect = 6e-45
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 968 LFLTGHLGDVMKESANISLTVAR----NFLSTIEPDNTFLNTRHLHLHVPEGAVKKDGPS 1023
L GD+ K S ++ +++ + + LN + +++ + K DG S
Sbjct: 38 THLLNISGDIAKHSITLASALSKKLVAEKKLPLPKKDIDLNNKEIYIQFSQSYSKIDGDS 97
Query: 1024 AGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIA 1069
A + A++S P+KQ+ A+TG + L G VL +GG+ EK A
Sbjct: 98 ATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEA 143
Score = 149 bits (378), Expect = 3e-41
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 685 AVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGV 744
K DG SA + A++S P+KQ+ A+TG + L G VL +GG+ EK AAKR G
Sbjct: 90 YSKIDGDSATAAVCLAIISALLDIPLKQDFAITGSLDLSGNVLAIGGVNEKIEAAKRYGF 149
Query: 745 HTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFE 785
+++PE N D + EG+ + V ++ LVF+
Sbjct: 150 KRVIIPEANMIDVIE-----TEGIEIIPVKTLDEIVPLVFD 185
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET:
MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB:
1rr9_A*
Length = 200
Score = 160 bits (406), Expect = 6e-45
Identities = 60/131 (45%), Positives = 79/131 (60%), Gaps = 13/131 (9%)
Query: 939 GSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNFLSTIEP 998
G L IET+ G L TG LG+VM+ES +LTV R +
Sbjct: 24 GDLLTIETAC-------------VPGKGKLTYTGSLGEVMQESIQAALTVVRARAEKLGI 70
Query: 999 DNTFLNTRHLHLHVPEGAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVL 1058
+ F R +H+HVPEGA KDGP+AGI + TALVS TG P++ ++AMTGEI+L G+VL
Sbjct: 71 NPDFYEKRDIHVHVPEGATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVL 130
Query: 1059 PVGGIKEKTIA 1069
P+GG+KEK +A
Sbjct: 131 PIGGLKEKLLA 141
Score = 158 bits (403), Expect = 2e-44
Identities = 49/105 (46%), Positives = 73/105 (69%)
Query: 685 AVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGV 744
A KDGP+AGI + TALVS TG P++ ++AMTGEI+L G+VLP+GG+KEK +AA R G+
Sbjct: 88 ATPKDGPAAGIAMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGI 147
Query: 745 HTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHTSE 789
T+L+P ENK+D ++P+ + L++H V +V L ++
Sbjct: 148 KTVLIPFENKRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPS 192
>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic
Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus
fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A
Length = 207
Score = 155 bits (393), Expect = 4e-43
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 937 FSGSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNFLSTI 996
+G L I V S KS+G + TG L ++ +E+ + + +
Sbjct: 24 SAGIVLPIIAEVTPSMS---------KSEGRVIATGRLQEIAREAVMNVSAIIKKYT--- 71
Query: 997 EPDNTFLNTRHLHLHVPEGAVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGK 1056
++ +H+ +G SA I+I TA++S G P+ Q++AMTG +S+ G+
Sbjct: 72 ---GRDISNMDVHIQFVGTYEGVEGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGE 128
Query: 1057 VLPVGGIKEKTIA 1069
VLPVGG+ +K A
Sbjct: 129 VLPVGGVTQKIEA 141
Score = 146 bits (370), Expect = 6e-40
Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 685 AVKKDGPSAGITITTALVSLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVGV 744
+G SA I+I TA++S G P+ Q++AMTG +S+ G+VLPVGG+ +K AA + G+
Sbjct: 88 YEGVEGDSASISIATAVISAIEGIPVDQSVAMTGSLSVKGEVLPVGGVTQKIEAAIQAGL 147
Query: 745 HTILMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHTSER 790
+++P++N D L + V VS +V + V E ++
Sbjct: 148 KKVIIPKDNIDDV-LLDAEHEGKIEVIPVSRINEVLEHVLEDGKKK 192
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 152 bits (387), Expect = 6e-43
Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 786 HTSERPFPCPVLGCDR---SFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNH 842
H + F C GC R F + VH+R HTGEKP+ C GC KS++ N K H
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 843 MRIHSGEKPYVCQVRDCQKRFTEYSSLYKH-TLVHSDIRPFICDR--CPRSYRQLCTLNV 899
+R H+GEKPY+C+ C K F+ S KH HS+ +P++C C + Y +L
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 900 HKKT 903
H KT
Sbjct: 149 HVKT 152
Score = 150 bits (381), Expect = 4e-42
Identities = 43/93 (46%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHM-R 844
HT E+P C GC +S++ K H+R+HTGEKPY+C GC K+F++A++ H R
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 845 IHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
HS EKPYVC++ C KR+T+ SSL KH
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 134 bits (339), Expect = 2e-36
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C + F + + + VH+R H+G +P+KC E C K++S + K H+R+HTGEKPY C
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCE 101
Query: 1199 HEFCSKSFKTSGDLQKH-VRTHTDE 1222
HE CSK+F + D KH RTH++E
Sbjct: 102 HEGCSKAFSNASDRAKHQNRTHSNE 126
Score = 127 bits (322), Expect = 4e-34
Identities = 35/82 (42%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEKPYRCA 1198
C+K++S ++K HLR H+G +PY C E C KAFS R H RTH+ EKPY C
Sbjct: 73 EGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCK 132
Query: 1199 HEFCSKSFKTSGDLQKHVRTHT 1220
C+K + L+KHV+T
Sbjct: 133 LPGCTKRYTDPSSLRKHVKTVH 154
Score = 123 bits (312), Expect = 8e-33
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1139 CPECKKTFSSAHHMKVHL---RIHSGIRPYKCP---VEYCEKAFSTQYSRKAHIRTHTGE 1192
C + F S + H+ IH + + C + F QY H+R HTGE
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
KP++C E C KS+ +L+ H+R+HT E
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 95
Score = 123 bits (310), Expect = 1e-32
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 10/125 (8%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHI---RTHTGEKPYVCGEAGCD---KSFASATNYKNH 842
E GC + F + HI H K +VC GC + F + H
Sbjct: 1 ETDCRWD--GCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 843 MRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC--DRCPRSYRQLCTLNVH 900
MR H+GEKP+ C C+K ++ +L H H+ +P++C + C +++ H
Sbjct: 59 MRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Query: 901 KKTNH 905
+ H
Sbjct: 119 QNRTH 123
Score = 96.1 bits (240), Expect = 3e-23
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHI-RTHTGEKPYVCGEAGCDKSFASATNYKNHMR 844
HT E+P+ C GC ++F+ ++ R H RTH+ EKPYVC GC K + ++ + H++
Sbjct: 92 HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Query: 845 IHSG 848
G
Sbjct: 152 TVHG 155
Score = 82.3 bits (204), Expect = 2e-18
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHI---RTHTGEKPYRCAHEFC---SKSFKTSGDLQKHV 1216
+ + C + F +Q HI H K + C C + FK L H+
Sbjct: 2 TDCRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Query: 1217 RTHTDE 1222
R HT E
Sbjct: 60 RRHTGE 65
Score = 69.2 bits (170), Expect = 1e-13
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 1138 VCPE--CKKTFSSAHHMKVH-LRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 1191
+C C K FS+A H R HS +PY C + C K ++ S + H++T G
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 46.0 bits (110), Expect = 1e-05
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 5/34 (14%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHV---RTHTDE 1222
E R CS+ F + L H+ H +
Sbjct: 1 ETDCRWDG--CSQEFDSQEQLVHHINSEHIHGER 32
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 140 bits (356), Expect = 3e-39
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
+ +RPF C GC++ + + ++H R HTGEKPY C C++ F+ + K H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR--CPRSYRQLCTLNVHKKT 903
+G KP+ C+ CQ++F+ L HT H+ +PF C C + + + L H
Sbjct: 62 TGVKPFQCK--TCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 128 bits (325), Expect = 5e-35
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ C C+R F+ S+ K H R HTG KP+ C C + F+ + + K H R
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT--CQRKFSRSDHLKTHTRT 88
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
H+GEKP+ C+ CQK+F L +H +H
Sbjct: 89 HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 124 bits (314), Expect = 2e-33
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 1139 CPE--CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
C C K + H+++H R H+G +PY+C + CE+ FS K H R HTG KP++
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTHTDE 1222
C + C + F S L+ H RTHT E
Sbjct: 69 C--KTCQRKFSRSDHLKTHTRTHTGE 92
Score = 120 bits (304), Expect = 3e-32
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
+C++ FS + +K H R H+G++P++C + C++ FS K H RTHTGEKP+ C
Sbjct: 41 FKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCR 98
Query: 1199 HEFCSKSFKTSGDLQKHVRTH 1219
C K F S +L +H H
Sbjct: 99 WPSCQKKFARSDELVRHHNMH 119
Score = 99.1 bits (248), Expect = 1e-24
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 1219
S RP+ C C K + + H R HTGEKPY+C + C + F S L++H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 1220 TDE 1222
T
Sbjct: 62 TGV 64
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 138 bits (350), Expect = 5e-38
Identities = 36/99 (36%), Positives = 55/99 (55%)
Query: 1124 GGGTVKKSTSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRK 1183
GG + + CP K+F + + + H+R+H+G +P+ CP C K F+ + K
Sbjct: 50 VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK 109
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
H RTHTGEKP++C E C + F S D +KH+ HT +
Sbjct: 110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 135 bits (342), Expect = 6e-37
Identities = 39/107 (36%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 786 HTSERPF----PCPVLGCDR---SFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATN 838
P C C R SF HIR HTGEKP+ C GC K FA + N
Sbjct: 48 EHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSEN 107
Query: 839 YKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 885
K H R H+GEKP+ C+ C +RF S KH VH+ +
Sbjct: 108 LKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
Score = 126 bits (319), Expect = 7e-34
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 11/127 (8%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAG-------CDKSFASATN 838
++ P CDR+F+T + H+ P KSF +
Sbjct: 20 DEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 839 YKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR--CPRSYRQLCT 896
NH+R+H+GEKP+ C C K F +L H H+ +PF C+ C R +
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 897 LNVHKKT 903
H
Sbjct: 138 RKKHMHV 144
Score = 123 bits (310), Expect = 1e-32
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEY-------CEKAFSTQYSRKAHIRTHTG 1191
C +TFS+ H + H+ + P + K+F +Y HIR HTG
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG 87
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
EKP+ C C K F S +L+ H RTHT E
Sbjct: 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Score = 100 bits (251), Expect = 1e-24
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
P C K F+ + ++K+H R H+G +P+KC E C++ F+ RK H+ HT +K
Sbjct: 96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 99.7 bits (249), Expect = 2e-24
Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 9/89 (10%)
Query: 1141 ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHE 1200
+ I + C++ FST + H+ P + H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 1201 F-------CSKSFKTSGDLQKHVRTHTDE 1222
KSFK L H+R HT E
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Score = 96.6 bits (241), Expect = 2e-23
Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 11/114 (9%)
Query: 799 CDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPY----VC 854
S + CD++F++ H+ + P VC
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKS--CDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 855 QVRDCQ---KRFTEYSSLYKHTLVHSDIRPFICDR--CPRSYRQLCTLNVHKKT 903
+C K F L H VH+ +PF C C + + + L +HK+T
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 36.9 bits (86), Expect = 0.011
Identities = 5/50 (10%), Positives = 9/50 (18%)
Query: 858 DCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+ C R++ + L H H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 135 bits (341), Expect = 3e-36
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
+ + C C ++ + + H+ HTGEKP+ C E GC+K F S + H
Sbjct: 7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD--IRPFICDR--CPRSYRQLCTLNVHK 901
H+GEK + C C RFT +++ KH + I ++C C +++++ L VH+
Sbjct: 67 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 902 KT 903
+
Sbjct: 127 FS 128
Score = 134 bits (340), Expect = 4e-36
Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK--PYVCGEAGCDKSFASATNYKNHM 843
HT E+ F C GCD FTT K H K YVC C K+F K H
Sbjct: 67 HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 844 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
H+ + PY C C KRF+ S L +H VH+ D C + H
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
Query: 904 NHRE 907
H++
Sbjct: 187 CHQD 190
Score = 126 bits (318), Expect = 3e-33
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+C ++ ++ HL H+G +P+ C E CEK F++ + H THTGEK + C
Sbjct: 18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 1200 EFCSKSFKTSGDLQKHVRTHTDE 1222
+ C F T +++KH +
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNI 100
Score = 117 bits (296), Expect = 3e-30
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 1138 VCPE--CKKTFSSAHHMKVHLRIHSG--IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C C F++ +MK H I Y C E C KAF K H +HT +
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 1194 PYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
PY C HE C K F L++H + H
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHEKVHA 160
Score = 114 bits (288), Expect = 3e-29
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 1138 VCPE--CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK-- 1193
C E C+K F+S HH+ H H+G + + C + C+ F+T+ + K H K
Sbjct: 44 PCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKIC 103
Query: 1194 PYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
Y C E C K+FK L+ H +HT +
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Score = 113 bits (285), Expect = 8e-29
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYK 871
K Y+C A C ++ + H+ H+GEKP+ C+ C+K FT L +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 872 HTLVHSDIRPFICD--RCPRSYRQLCTLNVHKKTNHRE 907
H+L H+ + F CD C + + H H
Sbjct: 63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Score = 105 bits (265), Expect = 5e-26
Identities = 23/68 (33%), Positives = 33/68 (48%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 1214
+ + Y C C A++ + +AH+ HTGEKP+ C E C K F + L +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 1215 HVRTHTDE 1222
H THT E
Sbjct: 63 HSLTHTGE 70
Score = 104 bits (262), Expect = 1e-25
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C K F + +KVH H+ PY+CP E C+K FS K H + H G +
Sbjct: 109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD- 167
Query: 1199 HEFCSKSFKTSGDLQKHV-RTHTD 1221
+ CS KT KHV H D
Sbjct: 168 -DSCSFVGKTWTLYLKHVAECHQD 190
Score = 71.5 bits (176), Expect = 3e-14
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQLCTLN 898
+ K Y+C DC + + L H H+ +PF C C + + L L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 899 VHKKT 903
H T
Sbjct: 62 RHSLT 66
Score = 66.8 bits (164), Expect = 1e-12
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
K Y C+ C ++ + LQ H+ HT E
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGE 40
Score = 29.9 bits (68), Expect = 3.4
Identities = 5/23 (21%), Positives = 10/23 (43%), Gaps = 2/23 (8%)
Query: 1137 NVCPECKKTFSSAHHMKVHLRIH 1159
+ C KT++ ++K H
Sbjct: 168 DSCSFVGKTWT--LYLKHVAECH 188
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 131 bits (332), Expect = 6e-36
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
R CP GC + F ++ + H+ TH G + +VC E C K+F ++ K H +H+G
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR--CPRSYRQLCTLNVHKKT 903
EKP+ C C KRF+ +L H +H+ RP++C C + + Q L H T
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 126 bits (319), Expect = 3e-34
Identities = 33/85 (38%), Positives = 51/85 (60%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
VC EC K F + +K H +H+G +P++C E C K FS ++ + H+R HTG++PY C
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 1198 AHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ C+K F S +L+ H+ TH
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHAKA 120
Score = 119 bits (300), Expect = 1e-31
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
R C C ++F S+ K H HTGEKP+ C GC K F+ N + H+RIH+G
Sbjct: 32 PRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 882
++PYVC C K+F + ++L H L H+ +
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 117 bits (296), Expect = 4e-31
Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C K F M+ HL H G R + C C KAF K H HTGEKP++C
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCT 66
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
E C K F +L+ HVR HT +
Sbjct: 67 FEGCGKRFSLDFNLRTHVRIHTGD 90
Score = 107 bits (271), Expect = 9e-28
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+PF C GC + F+ + H+R HTG++PYVC GC+K FA +TN K+H+
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 846 HSGEKPY 852
H+ K
Sbjct: 117 HAKAKNN 123
Score = 86.4 bits (215), Expect = 4e-20
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 1141 ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
C K FS +++ H+RIH+G RPY CP + C K F+ + K+HI TH K
Sbjct: 69 GCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 86.0 bits (214), Expect = 6e-20
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
R CP + C K F + + H+ TH G + + CA C K+F S L++H HT E
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHTGE 60
Score = 51.7 bits (125), Expect = 5e-08
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTH 1219
+ C H+ C+K F+ + ++KH+ TH
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH 30
Score = 41.7 bits (99), Expect = 2e-04
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 1138 VCP--ECKKTFSSAHHMKVHLRIHSGIRPYK 1166
VCP C K F+ + ++K H+ H+ + +
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 126 bits (320), Expect = 6e-35
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIR-THTGEKPYVCGEAGCDKSFASATNYKNHMR 844
+ PC GC R F+ H + H +K + C E C KSF + K HM+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 845 IHSGEKPYVCQVRDCQKRF 863
+HS + Y+C+
Sbjct: 62 LHSDTRDYICEF--SGPSS 78
Score = 108 bits (271), Expect = 3e-28
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 816 HTGEKPYVCGEAGCDKSFASATNYKNHMRI-HSGEKPYVCQVRDCQKRFTEYSSLYKHTL 874
+G C GC + F++ +H + H +K + C C K F L +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 875 VHSDIRPFICDRCPRSY 891
+HSD R +IC+ S
Sbjct: 62 LHSDTRDYICEFSGPSS 78
Score = 102 bits (257), Expect = 2e-26
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRCAHEFCSKSFKTSGDLQKHVR 1217
SG C C + FS + H + H +K + C C KSF L++H++
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 1218 THTDE 1222
H+D
Sbjct: 62 LHSDT 66
Score = 100 bits (251), Expect = 1e-25
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRI-HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
P C + FS+ ++ H + H + + CP C K+F+ + K H++ H+ + Y C
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Query: 1198 AHEFCSKSF 1206
EF S
Sbjct: 72 --EFSGPSS 78
Score = 36.0 bits (84), Expect = 0.006
Identities = 11/60 (18%), Positives = 13/60 (21%), Gaps = 28/60 (46%)
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 905
SG C C + F+ L N HKK H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYL----------------------------NHHKKYQH 33
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 126 bits (318), Expect = 2e-34
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
P C K ++ + H+K HLR H+G +PYKC E C+ F+ H R HTG KP++C
Sbjct: 20 YPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC- 78
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTD 1221
C++SF S L H++ H +
Sbjct: 79 -GVCNRSFSRSDHLALHMKRHQN 100
Score = 119 bits (301), Expect = 4e-32
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
R C GC + +T S+ K H+RTHTGEKPY C GCD FA + H R H+G
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
KP+ C V C + F+ L H H +
Sbjct: 73 AKPFQCGV--CNRSFSRSDHLALHMKRHQN 100
Score = 110 bits (278), Expect = 6e-29
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 802 SFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQK 861
S +S R H + P GC K + +++ K H+R H+GEKPY C C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYP------GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 862 RFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
RF L +H H+ +PF C C RS+ + L +H K
Sbjct: 56 RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 101 bits (254), Expect = 1e-25
Identities = 26/64 (40%), Positives = 33/64 (51%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
R + C C K ++ KAH+RTHTGEKPY+C E C F S +L +H R
Sbjct: 10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 1219 HTDE 1222
HT
Sbjct: 70 HTGA 73
Score = 89.2 bits (222), Expect = 2e-21
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ C GCD F S+ H R HTG KP+ CG C++SF+ + + HM+
Sbjct: 40 HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFSRSDHLALHMKR 97
Query: 846 H 846
H
Sbjct: 98 H 98
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation, hydrophobic
core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Length = 85
Score = 118 bits (299), Expect = 6e-32
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C K F + +KVH H+ PY+CP E C+K FS K H + H G +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD- 64
Query: 1199 HEFCSKSFKTSGDLQKHV-RTH 1219
+ CS KT KHV H
Sbjct: 65 -DSCSFVGKTWTLYLKHVAECH 85
Score = 114 bits (288), Expect = 1e-30
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+ C C ++F N KVH +HT + PY C GCDK F+ + K H ++H+G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 852 YVCQV-RDCQKRFTEYSSLYKHT 873
K +T Y
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAEC 84
Score = 96.9 bits (242), Expect = 3e-24
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
Y C E C KAF K H +HT + PY C HE C K F L++H + H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 94.6 bits (236), Expect = 2e-23
Identities = 25/84 (29%), Positives = 32/84 (38%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
YVC C K+F K H H+ + PY C C KRF+ S L +H VH+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 882 FICDRCPRSYRQLCTLNVHKKTNH 905
D C + H H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 76.5 bits (189), Expect = 4e-17
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHM-R 844
HT + P+ CP GCD+ F+ + K H + H G C + T Y H+
Sbjct: 26 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS--CSFVGKTWTLYLKHVAE 83
Query: 845 IH 846
H
Sbjct: 84 CH 85
Score = 45.3 bits (108), Expect = 3e-06
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 1195 YRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
Y C E C K+FK L+ H +HT +
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQ 29
Score = 28.0 bits (63), Expect = 4.6
Identities = 5/22 (22%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIH 1159
C KT++ ++K H
Sbjct: 66 SCSFVGKTWT--LYLKHVAECH 85
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 118 bits (299), Expect = 6e-32
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C KT++ + H+K HLR H+G +PY C + C F+ H R HTG +P++C
Sbjct: 10 YAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 1199 HEFCSKSFKTSGDLQKHVRTH 1219
C ++F S L H++ H
Sbjct: 70 K--CDRAFSRSDHLALHMKRH 88
Score = 117 bits (295), Expect = 2e-31
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR 844
+ T+ GC +++T S+ K H+RTHTGEKPY C GC FA + H R
Sbjct: 1 KRTATHTCDYA--GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Query: 845 IHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
H+G +P+ CQ C + F+ L H H
Sbjct: 59 KHTGHRPFQCQK--CDRAFSRSDHLALHMKRH 88
Score = 103 bits (259), Expect = 2e-26
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 816 HTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLV 875
T AGC K++ +++ K H+R H+GEKPY C C +F L +H
Sbjct: 2 RTATHTCDY--AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 876 HSDIRPFICDRCPRSYRQLCTLNVHKKT 903
H+ RPF C +C R++ + L +H K
Sbjct: 60 HTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 93.7 bits (234), Expect = 4e-23
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
+ C K ++ KAH+RTHTGEKPY C + C F S +L +H R
Sbjct: 2 RTATHTCDYA--GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 1219 HTDE 1222
HT
Sbjct: 60 HTGH 63
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 121 bits (306), Expect = 2e-31
Identities = 51/129 (39%), Positives = 74/129 (57%), Gaps = 10/129 (7%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ CP C +SF+ + H RTHTGEKPY C E C KSF+ + + H R
Sbjct: 72 HTGEKPYKCPE--CGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRT 127
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 905
H+GEKPY C +C K F+ +L+ H H+ +P+ C C +S+ + LNVH++T+
Sbjct: 128 HTGEKPYKC--PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Query: 906 RESKNKKPS 914
+ K S
Sbjct: 186 GK----KTS 190
Score = 121 bits (305), Expect = 2e-31
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT E+P+ CP C +SF+ H RTHTGEKPY C E C KSF+ N + H R
Sbjct: 44 HTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRAHQRT 99
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
H+GEKPY C +C K F++ + L H H+ +P+ C C +S+ + L+ H++T
Sbjct: 100 HTGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155
Score = 118 bits (299), Expect = 1e-30
Identities = 48/118 (40%), Positives = 68/118 (57%), Gaps = 6/118 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
E+P+ CP C +SF+ S+ H RTHTGEKPY C E C KSF+ + H R
Sbjct: 16 EPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRT 71
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
H+GEKPY C +C K F++ ++L H H+ +P+ C C +S+ QL L H++T
Sbjct: 72 HTGEKPYKC--PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Score = 108 bits (272), Expect = 6e-27
Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
CPEC K+FS + H+ H R H+G +PYKCP C K+FS + H RTHTGEKPY+C
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
C KSF +L+ H RTHT E
Sbjct: 82 E--CGKSFSQRANLRAHQRTHTGE 103
Score = 107 bits (270), Expect = 9e-27
Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
CPEC K+FS +++ H R H+G +PY CP C K+FS +AH RTHTGEKPY+C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
C KSF +L H RTHT E
Sbjct: 138 E--CGKSFSREDNLHTHQRTHTGE 159
Score = 107 bits (270), Expect = 9e-27
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 802 SFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQK 861
S S+ GEKPY C E C KSF+ + + H R H+GEKPY C +C K
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKC--PECGK 57
Query: 862 RFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
F++ L +H H+ +P+ C C +S+ Q L H++T
Sbjct: 58 SFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Score = 106 bits (267), Expect = 3e-26
Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
CPEC K+FS H++ H R H+G +PYKCP C K+FS + + H RTHTGEKPY+C
Sbjct: 108 CPECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
C KSF L H RTHT +
Sbjct: 166 E--CGKSFSRRDALNVHQRTHTGK 187
Score = 94.0 bits (235), Expect = 4e-22
Identities = 32/78 (41%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 1145 TFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSK 1204
+ + + G +PY CP C K+FS H RTHTGEKPY+C C K
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGK 57
Query: 1205 SFKTSGDLQKHVRTHTDE 1222
SF DL +H RTHT E
Sbjct: 58 SFSDKKDLTRHQRTHTGE 75
Score = 75.6 bits (187), Expect = 1e-15
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
CPEC K+FS ++ H R H+G +PYKC C K+FS + + H RTHTG+K
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTHTGKKT 189
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 117 bits (295), Expect = 2e-31
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 1139 CP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYR 1196
CP C + FS + + H+RIH+G +P++C C + FS HIRTHTGEKP+
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 1197 CAHEFCSKSFKTSGDLQKHVRTHTDE 1222
C + C + F S + ++H + H +
Sbjct: 65 C--DICGRKFARSDERKRHTKIHLRQ 88
Score = 116 bits (292), Expect = 6e-31
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
ERP+ CPV CDR F+ S HIR HTG+KP+ C C ++F+ + + H+R H+G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTG 59
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
EKP+ C C ++F +HT +H
Sbjct: 60 EKPFACD--ICGRKFARSDERKRHTKIH 85
Score = 100 bits (252), Expect = 1e-25
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
E+PY C CD+ F+ + + H+RIH+G+KP+ C R C + F+ L H H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTG 59
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKT 903
+PF CD C R + + H K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKI 84
Score = 95.2 bits (238), Expect = 1e-23
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
RPY CPVE C++ FS S HIR HTG+KP++C C ++F S L H+RTHT E
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGE 60
Score = 91.0 bits (227), Expect = 3e-22
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
HT ++PF C + C R+F+ S+ HIRTHTGEKP+ C C + FA + K H +I
Sbjct: 29 HTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKI 84
Query: 846 HSGEK 850
H +K
Sbjct: 85 HLRQK 89
Score = 79.4 bits (197), Expect = 4e-18
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
C C + FS + H+ H+R H+G +P+ C + C + F+ RK H + H +K
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHLRQK 89
Score = 56.7 bits (138), Expect = 4e-10
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E+PY C E C + F SG L +H+R HT +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ 32
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 118 bits (298), Expect = 2e-31
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR- 844
+ CP C + F + KVH R HTGEKP+ C + C K + N H
Sbjct: 2 SSGSSGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEAR 57
Query: 845 --IHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 902
++ E+ + C CQ+ F L H + H+ P+ C C + + Q L H
Sbjct: 58 NCMNRSEQVFTCS--VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Query: 903 TNH 905
H
Sbjct: 116 KLH 118
Score = 103 bits (259), Expect = 4e-26
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR---THTGEKPY 1195
CP C K F S +++KVH R H+G +P++CP C K + + + H + E+ +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECP--KCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 1196 RCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
C+ C ++F+ +L+ H+ +HT E
Sbjct: 68 TCSV--CQETFRRRMELRLHMVSHTGE 92
Score = 99.5 bits (249), Expect = 9e-25
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 1139 CPECKKTFSSAHHMKVHLR---IHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
CP+C K + ++ H ++ + + C V C++ F + + H+ +HTGE PY
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRMELRLHMVSHTGEMPY 95
Query: 1196 RCAHEFCSKSFKTSGDLQKH-VRTHTDE 1222
+C+ CS+ F DLQ H ++ H+
Sbjct: 96 KCSS--CSQQFMQKKDLQSHMIKLHSGP 121
Score = 81.0 bits (201), Expect = 3e-18
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHM-R 844
+ SE+ F C V C +F ++H+ +HTGE PY C C + F + ++HM +
Sbjct: 61 NRSEQVFTCSV--CQETFRRRMELRLHMVSHTGEMPYKCSS--CSQQFMQKKDLQSHMIK 116
Query: 845 IHSGEK 850
+HSG
Sbjct: 117 LHSGPS 122
Score = 77.2 bits (191), Expect = 7e-17
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR- 1217
SG +CP C K F ++Y K H R HTGEKP+ C C K + +L +H
Sbjct: 2 SSGSSGVECPT--CHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEAR 57
Query: 1218 --THTDE 1222
+ E
Sbjct: 58 NCMNRSE 64
Score = 69.5 bits (171), Expect = 3e-14
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAH-IRTHTGEK 1193
C C++TF +++H+ H+G PYKC C + F + ++H I+ H+G
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHSGPS 122
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein,
hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Length = 94
Score = 115 bits (291), Expect = 9e-31
Identities = 34/94 (36%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 524 SGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEK 583
SGY +EK+ IA ++L+P+ ++ + L ++T++ SAI +I+ Y RE+GVR L++ I K
Sbjct: 1 SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISK 60
Query: 584 VTRKVALTIVKKESDK-VTVTNDNLSDFVGKPIF 616
+ RK ++ +S K + + DNL D++G F
Sbjct: 61 LCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRF 94
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 114 bits (287), Expect = 3e-30
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
S P C V C + F+ + K H+R HTG KPY C CD + A +++ H+RI
Sbjct: 3 SGSSGPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRI 58
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
HS E+P+ CQ C S L H H+
Sbjct: 59 HSDERPFKCQ--ICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 110 bits (278), Expect = 5e-29
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C K FS +K H+R H+G++PYKC + C+ A + S H+R H+ E+P++C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSDERPFKC- 67
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
+ C + + S L H+R+HT +
Sbjct: 68 -QICPYASRNSSQLTVHLRSHTGD 90
Score = 109 bits (274), Expect = 2e-28
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 815 THTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTL 874
+ P+ C C K F+ K HMR H+G KPY C+ C + SSL KH
Sbjct: 2 SSGSSGPHKCEV--CGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLR 57
Query: 875 VHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
+HSD RPF C CP + R L VH ++
Sbjct: 58 IHSDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 89.0 bits (222), Expect = 2e-21
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C + + + HLRIHS RP+KC + C A H+R+HTG+
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKC--QICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 87.5 bits (218), Expect = 7e-21
Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
P+KC E C K FS + K H+R HTG KPY+C C + S L KH+R
Sbjct: 3 SGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRI 58
Query: 1219 HTDE 1222
H+DE
Sbjct: 59 HSDE 62
Score = 57.0 bits (139), Expect = 3e-10
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 1188 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ P++C C K F L+ H+R HT
Sbjct: 2 SSGSSGPHKCEV--CGKCFSRKDKLKTHMRCHTGV 34
Score = 56.7 bits (138), Expect = 4e-10
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
H+ ERPF C + C + S+ VH+R+HTG+ G
Sbjct: 59 HSDERPFKCQI--CPYASRNSSQLTVHLRSHTGDSGPSSG 96
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 113 bits (285), Expect = 9e-30
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
+ ++ +PC C +SFT + R H+ H G +PY CG C K F + HM+I
Sbjct: 5 SSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKI 59
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLN 898
H+G KPY C C KRF S ++H V S + + + ++ + +
Sbjct: 60 HTGIKPYECN--ICAKRFMWRDSFHRH--VTSCTKSYEAAKAEQNTTEASGPS 108
Score = 96.4 bits (241), Expect = 9e-24
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 1141 ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHE 1200
+C K+F+ H+ +H G+RPY C V C K F ++ H++ HTG KPY C
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGIKPYECNI- 70
Query: 1201 FCSKSFKTSGDLQKHVRTHTDE 1222
C+K F H +
Sbjct: 71 -CAKRFMWRDSF--HRHVTSCT 89
Score = 92.9 bits (232), Expect = 1e-22
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHT 873
+G+K Y C + C KSF + HM +H G +PY C C K+F L H
Sbjct: 3 SGSSGDKLYPC-Q--CGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHLVGHM 57
Query: 874 LVHSDIRPFICDRCPRSYRQLCTLNVH 900
+H+ I+P+ C+ C + + + + H
Sbjct: 58 KIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 90.2 bits (225), Expect = 1e-21
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C K F HH+ H++IH+GI+PY+C C K F + H + K Y A
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYEC--NICAKRFM--WRDSFHRHVTSCTKSYEAA 95
Query: 1199 HEFCSKSFKTSGDL 1212
++ +
Sbjct: 96 K--AEQNTTEASGP 107
Score = 86.3 bits (215), Expect = 3e-20
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 1157 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 1216
SG + Y C C K+F+ + R H+ H G +PY C C K FK L H+
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHM 57
Query: 1217 RTHTDE 1222
+ HT
Sbjct: 58 KIHTGI 63
Score = 64.8 bits (159), Expect = 1e-12
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 843 MRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKK 902
SG+K Y CQ C K FT S +H +H +RP+ C C + ++ L H K
Sbjct: 2 SSGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Query: 903 T 903
Sbjct: 59 I 59
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper,
X-RAY crystallography, structure-based design, zinc
fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
PDB: 1xf7_A
Length = 88
Score = 108 bits (272), Expect = 3e-28
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C + FS + H+ H+R H+G +P+ C + C + F+ RK H P
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQH-ILPILE- 61
Query: 1199 HEFCSKSFKTSGDLQKHV---RTHTDE 1222
+ + + L+ V + E
Sbjct: 62 -DKVEELLSKNYHLENEVARLKKLVGE 87
Score = 102 bits (257), Expect = 3e-26
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE 849
+PF C + C R+F+ S+ HIRTHTGEKP+ C C + FA + K H I
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQ-HI 56
Query: 850 KPYVCQVRDCQKRFTEYSSLYKH 872
P + ++ ++ L
Sbjct: 57 LPILED--KVEELLSKNYHLENE 77
Score = 90.6 bits (226), Expect = 4e-22
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDI 879
KP+ C C ++F+ + + H+R H+GEKP+ C C ++F +H + I
Sbjct: 2 KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRHRDIQH-I 56
Query: 880 RPFICDRCPRSYRQLCTLNVHKK 902
P + D+ + L
Sbjct: 57 LPILEDKVEELLSKNYHLENEVA 79
Score = 89.1 bits (222), Expect = 1e-21
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
++P++C C + FS HIRTHTGEKP+ C C + F S + ++H
Sbjct: 1 MKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHRDIQH 55
Score = 80.2 bits (199), Expect = 2e-18
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSF---ASATNYKNH 842
HT E+PF C + C R F S+ RK H P + + ++ N
Sbjct: 26 HTGEKPFACDI--CGRKFARSDERKRHRDIQH-ILPILEDK--VEELLSKNYHLENEVAR 80
Query: 843 MRIHSGEK 850
++ GE+
Sbjct: 81 LKKLVGER 88
Score = 72.9 bits (180), Expect = 6e-16
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYS---RKAHIRTHTGEK 1193
C C + F+ + K H I I P + E+ S Y A ++ GE+
Sbjct: 34 CDICGRKFARSDERKRHRDIQ-HILPILE--DKVEELLSKNYHLENEVARLKKLVGER 88
Score = 30.9 bits (71), Expect = 0.47
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 879 IRPFICDRCPRSYRQLCTLNVHKKT 903
++PF C C R++ + L H +T
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRT 25
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 105 bits (265), Expect = 4e-27
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
+++ F C C R FT S +H RTHT E+PY C C K+F + ++H I
Sbjct: 12 SKTKKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYI 67
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
HS EKP+ CQ +C K F + +L H +H
Sbjct: 68 HSKEKPFKCQ--ECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 104 bits (262), Expect = 1e-26
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C + F+ ++++ +H R H+ RPY C + C KAF Q + H H+ EKP++C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 1199 HEFCSKSFKTSGDLQKHVRTHTDE 1222
C K F S L H H
Sbjct: 78 E--CGKGFCQSRTLAVHKTLHMQT 99
Score = 103 bits (260), Expect = 2e-26
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLY 870
+K ++C C + F + N H R H+ E+PY C C K F L
Sbjct: 7 GGRLPSKTKKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCD--ICHKAFRRQDHLR 62
Query: 871 KHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
H +HS +PF C C + + Q TL VHK
Sbjct: 63 DHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 89.0 bits (222), Expect = 3e-21
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 1147 SSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSF 1206
SS + + C ++C + F+ Y+ H RTHT E+PY C C K+F
Sbjct: 2 SS--GSSGGRLPSKTKKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAF 55
Query: 1207 KTSGDLQKHVRTHTDE 1222
+ L+ H H+ E
Sbjct: 56 RRQDHLRDHRYIHSKE 71
Score = 81.7 bits (203), Expect = 1e-18
Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
C C K F H++ H IHS +P+KC + C K F + H H
Sbjct: 48 CDICHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 33.2 bits (77), Expect = 0.11
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 867 SSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
S L + FIC C R + + L +H++T
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT 39
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 104 bits (262), Expect = 5e-27
Identities = 35/82 (42%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C C K+F + + HL IHS RPY C +YC K F + K H HTGEKP++C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 1199 HEFCSKSFKTSGDLQKHVRTHT 1220
C K+F S +L H R HT
Sbjct: 62 V--CGKAFSQSSNLITHSRKHT 81
Score = 89.8 bits (224), Expect = 6e-22
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 799 CDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRD 858
C +SF S+ H+ H+ +PY C C K F ++ K H IH+GEKP+ CQ
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQ--V 62
Query: 859 CQKRFTEYSSLYKHTLVH 876
C K F++ S+L H+ H
Sbjct: 63 CGKAFSQSSNLITHSRKH 80
Score = 80.2 bits (199), Expect = 2e-18
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRP 881
+ C C KSF ++ H+ IHS +PY CQ C KRF + S + KHT +H+ +P
Sbjct: 2 FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYPCQ--YCGKRFHQKSDMKKHTFIHTGEKP 57
Query: 882 FICDRCPRSYRQLCTLNVHKKT 903
C C +++ Q L H +
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRK 79
Score = 71.7 bits (177), Expect = 2e-15
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
H+ RP+PC C + F + K H HTGEKP+ C C K+F+ ++N H R
Sbjct: 24 HSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITHSRK 79
Query: 846 HSG 848
H+G
Sbjct: 80 HTG 82
Score = 70.1 bits (173), Expect = 5e-15
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ C + C K+F + H+ H+ +PY C ++C K F D++KH HT E
Sbjct: 2 FDC--KICGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTGE 55
Score = 65.1 bits (160), Expect = 3e-13
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 1191
C C K F MK H IH+G +P+KC + C KAFS + H R HTG
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKC--QVCGKAFSQSSNLITHSRKHTG 82
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 102 bits (256), Expect = 2e-26
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 1149 AHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKT 1208
+ S IR + C C K + KAH RTHTGEKP+ C+ + C + F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 1209 SGDLQKHVRTH 1219
S +L +H RTH
Sbjct: 62 SDELSRHRRTH 72
Score = 89.4 bits (222), Expect = 9e-22
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR 844
+ + R C GC +++ S+ K H RTHTGEKP+ C GC++ FA + H R
Sbjct: 11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
Query: 845 IH 846
H
Sbjct: 71 TH 72
Score = 89.0 bits (221), Expect = 1e-21
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 806 SNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTE 865
S+ + + ++C GC K++ +++ K H R H+GEKP+ C + C++RF
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 866 YSSLYKHTLVH 876
L +H H
Sbjct: 62 SDELSRHRRTH 72
Score = 74.7 bits (184), Expect = 1e-16
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 1118 GSSGGGGGGTVKKSTSSENNVC--PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKA 1175
GSSG G S+ +++C P C KT+ + H+K H R H+G +P+ C + CE+
Sbjct: 1 GSSGSSG--PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERR 58
Query: 1176 FSTQYSRKAHIRTH 1189
F+ H RTH
Sbjct: 59 FARSDELSRHRRTH 72
Score = 60.1 bits (146), Expect = 1e-11
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 1181 SRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + + C+H C K++ S L+ H RTHT E
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE 45
Score = 55.1 bits (133), Expect = 9e-10
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 836 ATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD--RCPRSYRQ 893
++ S + ++C C K + + S L HT H+ +PF C C R + +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 894 LCTLNVHKKT 903
L+ H++T
Sbjct: 62 SDELSRHRRT 71
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 102 bits (258), Expect = 2e-26
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 816 HTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLV 875
+G C C K F + H HSGEKPY C C RF + H
Sbjct: 2 SSGSSGVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRS 57
Query: 876 HS--DIRPFICDRCPRSYRQLCTLNVHKKTNH 905
H +P+IC C + + + LN H K H
Sbjct: 58 HDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 99.1 bits (248), Expect = 6e-25
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYR 1196
C C K F +H+ H HSG +PY CPV C F + H+R+H G KPY
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 1197 CAHEFCSKSFKTSGDLQKHV-RTHTDE 1222
C C K F L H+ + H+
Sbjct: 68 CQS--CGKGFSRPDHLNGHIKQVHSGP 92
Score = 98.3 bits (246), Expect = 1e-24
Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
+ C + C + F H +H+GEKPY C C F H+R
Sbjct: 2 SSGSSGVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRS 57
Query: 846 HSGE--KPYVCQVRDCQKRFTEYSSLYKH 872
H G KPY+CQ C K F+ L H
Sbjct: 58 HDGSVGKPYICQ--SCGKGFSRPDHLNGH 84
Score = 84.8 bits (211), Expect = 6e-20
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
SG C E C K F Y H +H+GEKPY C C FK + HVR+
Sbjct: 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRS 57
Query: 1219 HTDE 1222
H
Sbjct: 58 HDGS 61
Score = 72.5 bits (179), Expect = 1e-15
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGE--KPYVCGEAGCDKSFASATNYKNHM 843
H+ E+P+ CPV C F + H+R+H G KPY+C C K F+ + H+
Sbjct: 30 HSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFSRPDHLNGHI 85
Query: 844 -RIHSGEK 850
++HSG
Sbjct: 86 KQVHSGPS 93
Score = 67.9 bits (167), Expect = 5e-14
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSG--IRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEK 1193
CP C F M H+R H G +PY C + C K FS HI + H+G
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHSGPS 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 116 bits (290), Expect = 3e-26
Identities = 101/692 (14%), Positives = 202/692 (29%), Gaps = 192/692 (27%)
Query: 248 VEEKVKQQHRKY--ILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKV------PPPV 299
++ + + +Y IL A D KD +++ + + +++ V
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNF----DCKD-VQDMPKSILSKEEIDHIIMSKDAV 61
Query: 300 MEVL---------NEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEEN---LDLTQ 347
L EE+ + F+E + NY +L S I++E+ +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQK-FVEE-----VLRINY-KFLMS---PIKTEQRQPSMMTRM 111
Query: 348 AAKILDDDHYGMEDVKK----RILEFIAVSQ-LKGTTQGKILCFYGPPGVGKTSIAKSIA 402
+ D + + K R+ ++ + Q L K + G G GKT +A +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 403 RALNRE-YFRF-----SVGGM-SDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLID 455
+ + F ++ S ++ ++ P + + + + I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 456 EVDK---IGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLS-RVLFICT--ANVIDT 509
+ K Y + LL +L QNA + + +LS ++L T V D
Sbjct: 232 AELRRLLKSKPY----ENCLL-VLLNVQNAKAWNAF-----NLSCKILLT-TRFKQVTDF 280
Query: 510 IPEPLRDRMEMIDVS-GYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568
+ + + S +E ++ +YL + L E +T P + +I
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYL---DCRPQDLPREVLTTNPRRLS-IIAES 336
Query: 569 CRESGVR--NLQK-HIEKVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLFEIT 625
R+ N + + +K+T + ++ + L + +F +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSL------------NVLEPAEYRKMF---DRLSVF 381
Query: 626 PPGVVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVMGLAWTAMA 685
PP I P +++ L W +
Sbjct: 382 PPSA------------------------------HI-----------PTILLSLIWFDV- 399
Query: 686 VKKDGPSAGITITTALV--SLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIAAKRVG 743
K + + L SL KQ T IS+ L + K
Sbjct: 400 -IKSDV---MVVVNKLHKYSLV----EKQPKEST--ISIPSIYL-----ELKVKLENEYA 444
Query: 744 VHTILMPEENKK------DFTDLPE--YIREGLNVHF--------VSEWRQVY-DLVFEH 786
+H ++ N D Y + H ++ +R V+ D
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---- 500
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
F IR H + YK ++ +
Sbjct: 501 ---------------RFLEQKIR------HDS--TAWNASGSILNTLQQLKFYKPYICDN 537
Query: 847 SGE-KPYVCQVRDCQKRFTEYSSLYKHT-LVH 876
+ + V + D + E K+T L+
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 71.8 bits (175), Expect = 1e-12
Identities = 60/402 (14%), Positives = 122/402 (30%), Gaps = 112/402 (27%)
Query: 24 TKAAPPPTSPEPNKKAAKEA--KIIND-----KMLKPKSKPLNGKKNA-----PETNQIK 71
+ P + E ++ ND K + +P + A P N +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 72 KGSGQGNAKSSGKSSGKPEAKSDKVVVSYS----LWVGSNVTAQHSINITTDYNDTFYHV 127
G G SGK+ + V W+ N+ +S + +
Sbjct: 156 DGVL-G----SGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQ 208
Query: 128 MQMAAENDDNFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMNPLYKEQLMIL------ 181
+ N + +DH ++ + + + L R ++ + Y+ L++L
Sbjct: 209 ID---PNWTSRSDHSSNIKLRIHSIQAEL--------RRLL-KSKPYENCLLVLLNVQNA 256
Query: 182 -------------LQQENSPVVD-------NPIYLADLGAALTGAEGTEQQA-ILE--EM 218
L V D I L LT E L+
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 219 DIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQ-QHRKYILQEQL-KAIKKEL-GLE 275
D+P R +L+ + + + I + + + + K++ ++L I+ L LE
Sbjct: 317 DLP-REVLTTNPRRLSI--------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 276 KDD-----KD-AIEEKFRERIKDKKVPPPVMEVL------------NEELAKLGFLESHS 317
+ ++ F +P ++ ++ +L K +E
Sbjct: 368 PAEYRKMFDRLSV---FPP---SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 318 SEFNVTRN--YLDWLTSLPWGIQSEENLDLTQAAKILDDDHY 357
E ++ YL+ ++ E L + I+ DHY
Sbjct: 422 KESTISIPSIYLELK------VKLENEYALHR--SIV--DHY 453
Score = 62.6 bits (151), Expect = 8e-10
Identities = 86/572 (15%), Positives = 163/572 (28%), Gaps = 164/572 (28%)
Query: 485 LDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQY-LIPQA 543
+DH + +S L + T L + E + V +V E + Y +
Sbjct: 51 IDHIIMSKDAVSGTLRL-----FWT----LLSKQEEM-VQKFVEE---VLRINYKFLMSP 97
Query: 544 MKESGLSPEQITLE--------PSAIQVLIK-NYCRESGVRNLQKHIEKVTRKVALTIV- 593
+K P +T + QV K N R L++ + ++ + I
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 594 KKESDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVKKESDKVTVTNDNL 653
S K V D + + ++F + + + L +++K ++ +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 654 SDFVGKPIFSHD-------RLFEITP-PGVVMGLA--WTAMAVKKDGPSAGITITT---- 699
SD RL + P ++ L A A S I +TT
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 700 ---ALVSLATGKP--IKQNLAMTGE--ISLVGKVLPVGGIKEKT---------------I 737
L + T ++ +T + SL+ K L + + I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL---DCRPQDLPREVLTTNPRRLSII 333
Query: 738 AAK-RVGVHTI---------------------LMPEENKKDFTDL---PEYIREGLNVHF 772
A R G+ T L P E +K F L P + H
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------SAH- 386
Query: 773 VSE------WRQV--------------YDLVFEHTSERPFPCPVLGCDRSFTTSNIRKVH 812
+ W V Y LV + E P + + N +H
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 813 --IRTHTGEKPYVCGEAGCDKSFASATNY-KNHMRIHSGEKPYVCQVRDCQ--KRFTEYS 867
I H + D Y +H+ H +++ + +R T +
Sbjct: 447 RSIVDHYNIPKTFDSD---DLIPPYLDQYFYSHIGHH---------LKNIEHPERMTLFR 494
Query: 868 SLY------KHTLVHSDI------------------RPFICDRCPRSYRQLCTLNVHKKT 903
++ + + H +P+ICD P+ R + + +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLP 553
Query: 904 NHRESKNKKPSNRVSNQLISIQSSLTSYYSFV 935
E+ + ++ +L + +
Sbjct: 554 KIEENLICSKYTDL------LRIALMAEDEAI 579
Score = 32.9 bits (74), Expect = 0.88
Identities = 41/304 (13%), Positives = 91/304 (29%), Gaps = 93/304 (30%)
Query: 838 NYKNHMRIHSGEKPYVCQ--VRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLC 895
++ +HM +GE Y + + + F + F C + +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAF---------------VDNFDCKDVQDMPKSIL 46
Query: 896 TLNVHKKTNH--RESKNKKPSNRVSNQLISIQSSLTSYYSFVHFSGSTL-----FIETSV 948
+ ++ +H + R+ L+S Q + FV L F+ + +
Sbjct: 47 S---KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM--VQKFV---EEVLRINYKFLMSPI 98
Query: 949 RKPTSVATDPADDKK----------SDGSLFLTGHLGDVMKESANISLTVARNFLSTIEP 998
+ P+ + +D +F + V + + L R L + P
Sbjct: 99 KTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKYN---VSRLQPYLKL---RQALLELRP 149
Query: 999 DNTFLNTRHLHLHVPEGAVK-------------KDGPSAGI------------TITTALV 1033
+++ + G+ K + I T+ L
Sbjct: 150 A------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 1034 SLATGKPIKQNLAMTGEISLVGKVLPVGGIKEKTIALKPLIQQQEQHKSKMFIIVDLDDV 1093
L I N + S K L + I+ + L+ L++ + ++ L +V
Sbjct: 204 KLLY--QIDPNWTSRSDHSSNIK-LRIHSIQAE---LRRLLKSKPYENC----LLVLLNV 253
Query: 1094 -DRE 1096
+ +
Sbjct: 254 QNAK 257
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 101 bits (255), Expect = 4e-26
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 7/75 (9%)
Query: 1151 HMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE--KPYRCAHEFCSKSFKT 1208
R HSG +PY+C C F+ + K HI E + C H C
Sbjct: 2 SSGSSGRTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIAR 57
Query: 1209 SGDLQKHVRT-HTDE 1222
DL H+R H+
Sbjct: 58 KSDLGVHLRKQHSYS 72
Score = 95.7 bits (239), Expect = 5e-24
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGE--KPYVCGEAGCDKSFASATNYKNHM 843
H+ E+P+ C + C FT S K+HI E + C CD A ++ H+
Sbjct: 10 HSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIARKSDLGVHL 65
Query: 844 R-IHSGEKPY 852
R HS P
Sbjct: 66 RKQHSYSGPS 75
Score = 92.2 bits (230), Expect = 9e-23
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 810 KVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE--KPYVCQVRDCQKRFTEYS 867
RTH+GEKPY C C F + K H+ E + C C S
Sbjct: 4 GSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCP--HCDTVIARKS 59
Query: 868 SLYKH 872
L H
Sbjct: 60 DLGVH 64
Score = 86.8 bits (216), Expect = 8e-21
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 838 NYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS--DIRPFICDRCPRSYRQLC 895
+ + R HSGEKPY C + C RFT+ ++ H L ++ F C C +
Sbjct: 2 SSGSSGRTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Query: 896 TLNVHKKTNH 905
L VH + H
Sbjct: 60 DLGVHLRKQH 69
Score = 84.1 bits (209), Expect = 5e-20
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSG--IRPYKCPVEYCEKAFSTQYSRKAHIRT-HTGEKPY 1195
C C F+ + MK+H+ + + C +C+ + + H+R H+ P
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSYSGPS 75
Score = 27.9 bits (63), Expect = 4.7
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 1210 GDLQKHVRTHTDE 1222
G RTH+ E
Sbjct: 1 GSSGSSGRTHSGE 13
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger,
dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 96.6 bits (241), Expect = 2e-24
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 1146 FSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKS 1205
+++ ++ RPY CPVE C++ FS HIR HTG+KP++C C ++
Sbjct: 3 PHPMNNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRN 58
Query: 1206 FKTSGDLQKHVRTHT 1220
F S L H+RTHT
Sbjct: 59 FSRSDHLTTHIRTHT 73
Score = 85.4 bits (212), Expect = 2e-20
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR 844
RP+ CPV CDR F+ S+ HIR HTG+KP+ C C ++F+ + + H+R
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIR 70
Query: 845 IHS 847
H+
Sbjct: 71 THT 73
Score = 84.7 bits (210), Expect = 4e-20
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 806 SNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTE 865
N ++ +PY C CD+ F+ + H+RIH+G+KP+ C++ C + F+
Sbjct: 6 MNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSR 61
Query: 866 YSSLYKHTLVHS 877
L H H+
Sbjct: 62 SDHLTTHIRTHT 73
Score = 70.4 bits (173), Expect = 3e-15
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 833 FASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYR 892
N N++ +PY C V C +RF+ L +H +H+ +PF C C R++
Sbjct: 3 PHPMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60
Query: 893 QLCTLNVHKKT 903
+ L H +T
Sbjct: 61 RSDHLTTHIRT 71
Score = 65.0 bits (159), Expect = 3e-13
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 1138 VCP--ECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 1190
CP C + FS + + H+RIH+G +P++C + C + FS HIRTHT
Sbjct: 21 ACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHT 73
Score = 65.0 bits (159), Expect = 3e-13
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 1182 RKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
++ +PY C E C + F S +L +H+R HT +
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQ 47
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 74
Score = 93.7 bits (234), Expect = 2e-23
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 1150 HHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTS 1209
HH H + +PYKC + C+ +F + + +H HTGEKPYRC C F
Sbjct: 3 HHHHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRP 58
Query: 1210 GDLQKHVRTHTDE 1222
+L+ H R H+ E
Sbjct: 59 ANLKTHTRIHSGE 71
Score = 89.0 bits (222), Expect = 1e-21
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLY 870
H +KPY C C SF N +H +H+GEKPY C C +F ++L
Sbjct: 7 HHSHMTHSDKPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLK 62
Query: 871 KHTLVH 876
HT +H
Sbjct: 63 THTRIH 68
Score = 87.9 bits (219), Expect = 2e-21
Identities = 29/67 (43%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
S++P+ C C SF H HTGEKPY C C F N K H RI
Sbjct: 12 THSDKPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRI 67
Query: 846 HSGEKPY 852
HSGEKPY
Sbjct: 68 HSGEKPY 74
Score = 79.0 bits (196), Expect = 4e-18
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
C C+ +F ++ H +H+G +PY+C C F+ + K H R H+GEKPY
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRC--NICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 67.1 bits (165), Expect = 5e-14
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVH 900
+H + +KPY C CQ F +L H VH+ +P+ C+ C + + L H
Sbjct: 7 HHSHMTHSDKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 901 KKT 903
+
Sbjct: 65 TRI 67
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 92.9 bits (232), Expect = 4e-23
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHT 873
+ + P C E C S +S + H RIH ++P+ C C + S+L KH
Sbjct: 2 SSGSSGHPEKCSE--CSYSCSSKAALRIHERIHCTDRPFKCN--YCSFDTKQPSNLSKHM 57
Query: 874 LVH 876
Sbjct: 58 KKF 60
Score = 89.1 bits (222), Expect = 8e-22
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
+S P C C S ++ ++H R H ++P+ C C +N HM+
Sbjct: 4 GSSGHPEKCSE--CSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHMKK 59
Query: 846 HSGEKPY 852
G+
Sbjct: 60 FHGDMSG 66
Score = 87.6 bits (218), Expect = 3e-21
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 1157 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV 1216
S P KC C + S++ + + H R H ++P++C + CS K +L KH+
Sbjct: 2 SSGSSGHPEKC--SECSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLSKHM 57
Query: 1217 RTHTDE--FQMSG 1227
+ + SG
Sbjct: 58 KKFHGDMSGPSSG 70
Score = 77.2 bits (191), Expect = 1e-17
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
C EC + SS +++H RIH RP+KC YC + H++ G+ +
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 64.8 bits (159), Expect = 3e-13
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 844 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
S P C +C + ++L H +H RPF C+ C +Q L+ H K
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 93.0 bits (232), Expect = 6e-23
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGE----KPYVCQVRDCQKRFTEY 866
RTHTGEKPY C CDK+F H + + +VC C K FT
Sbjct: 5 SSGRTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRR 60
Query: 867 SSLYKHTLVHSDIRPFICDRC 887
+++ +H + +
Sbjct: 61 NTMARHADNCAGPDGVEGENS 81
Score = 89.9 bits (224), Expect = 8e-22
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGE----KPYVCGEAGCDKSFASATNYKN 841
HT E+P+ C CD++F + +H + + +VC + C K+F
Sbjct: 10 HTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRNTMAR 65
Query: 842 HMRIHSGEKPYVCQVRDCQKRF 863
H +G + +
Sbjct: 66 HADNCAGPDGVEGE--NSGPSS 85
Score = 85.3 bits (212), Expect = 4e-20
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 1151 HMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGE----KPYRCAHEFCSKSF 1206
R H+G +PY C +C+K F + H + + + C+ C K+F
Sbjct: 2 SSGSSGRTHTGEKPYACS--HCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTF 57
Query: 1207 KTSGDLQKHVRTHTDE 1222
+ +H
Sbjct: 58 TRRNTMARHADNCAGP 73
Score = 84.1 bits (209), Expect = 7e-20
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSG----IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
C C KTF + +H + + + C C K F+ + + H G
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCS--KCGKTFTRRNTMARHADNCAGPDG 75
Query: 1195 YRCAHEFCSKSF 1206
+ S
Sbjct: 76 VEGEN--SGPSS 85
Score = 56.8 bits (138), Expect = 3e-10
Identities = 9/49 (18%), Positives = 12/49 (24%), Gaps = 4/49 (8%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSF 833
+ F C C ++FT N H G S
Sbjct: 41 PNFVPAAFVCSK--CGKTFTRRNTMARHADNCAGPDGVEGEN--SGPSS 85
Score = 47.5 bits (114), Expect = 5e-07
Identities = 15/72 (20%), Positives = 20/72 (27%), Gaps = 30/72 (41%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHK 901
R H+GEKPY C C K F + L ++H
Sbjct: 6 SGRTHTGEKPYACS--HCDKTFRQKQLL----------------------------DMHF 35
Query: 902 KTNHRESKNKKP 913
K H +
Sbjct: 36 KRYHDPNFVPAA 47
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 87.6 bits (218), Expect = 3e-21
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 1157 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT--HTGEKPYRCAHEFCSKSFKTSGDLQK 1214
G Y+C + C + ++ + H T K Y C FC K F ++
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPC--PFCFKEFTRKDNMTA 58
Query: 1215 HVRTHT 1220
HV+
Sbjct: 59 HVKIIH 64
Score = 84.9 bits (211), Expect = 2e-20
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRI--HSGEKPYVCQVRDCQKRFTEYSSLYK 871
T GE Y C C + + +N+ H K Y C C K FT ++
Sbjct: 3 FTKEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTA 58
Query: 872 HTLVHSDI 879
H + I
Sbjct: 59 HVKIIHKI 66
Score = 79.9 bits (198), Expect = 1e-18
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRT--HTGEKPYVCGEAGCDKSFASATNYKNHM 843
E + C V C R +T + H T K Y C C K F N H+
Sbjct: 5 KEGEHTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHV 60
Query: 844 RIHSG 848
+I
Sbjct: 61 KIIHK 65
Score = 69.9 bits (172), Expect = 5e-15
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 1139 CPECKKTFSSAHHMKVHLRI--HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 1191
C C + ++ + H ++ Y CP C K F+ + + AH++
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIHK 65
Score = 62.6 bits (153), Expect = 2e-12
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT--HTDE 1222
T GE YRC + CS+ + + +H T +
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNV 38
Score = 41.0 bits (97), Expect = 8e-05
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGI 1162
CP C K F+ +M H++I I
Sbjct: 43 CPFCFKEFTRKDNMTAHVKIIHKI 66
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain
containing protein 16, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 87.1 bits (217), Expect = 5e-21
Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 1151 HMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSG 1210
R YKC + C K+FS H RTHTGEKPY+C C K+F
Sbjct: 5 SSGRSEWQQRERRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFIQRS 60
Query: 1211 DLQKHVRTHTDE 1222
L H R HT
Sbjct: 61 HLIGHHRVHTGS 72
Score = 84.0 bits (209), Expect = 7e-20
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYK 871
+ Y C E C KSF+ +++ H R H+GEKPY C +C K F + S L
Sbjct: 9 SEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIG 64
Query: 872 HTLVH 876
H VH
Sbjct: 65 HHRVH 69
Score = 80.9 bits (201), Expect = 7e-19
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
R + C C +SF+ S+ H RTHTGEKPY C E C K+F ++ H R+
Sbjct: 13 QRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFIQRSHLIGHHRV 68
Query: 846 HSGEKPY 852
H+G P
Sbjct: 69 HTGSGPS 75
Score = 75.9 bits (188), Expect = 4e-17
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
C EC K+FS + + H R H+G +PYKC + C KAF + H R HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 63.2 bits (155), Expect = 1e-12
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHK 901
+ Y C +C K F+ S L KH H+ +P+ CD C +++ Q L H
Sbjct: 9 SEWQQRERRRYKCD--ECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH 66
Query: 902 KT 903
+
Sbjct: 67 RV 68
Score = 42.0 bits (100), Expect = 4e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYK 1166
C EC K F H+ H R+H+G P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 31.3 bits (72), Expect = 0.23
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 867 SSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
S + + R + CD C +S+ L+ H++T
Sbjct: 4 GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 40
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 85.6 bits (213), Expect = 2e-20
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYK 871
H+GEKPY C E C K+F+ ++ H R+H+GEKPY C +C K F++ S L
Sbjct: 5 SSGIHSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCL--ECGKAFSQNSGLIN 60
Query: 872 HTLVHSDIRPF 882
H +H+
Sbjct: 61 HQRIHTSGPSS 71
Score = 83.3 bits (207), Expect = 9e-20
Identities = 30/68 (44%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQK 1214
IHSG +PY C C KAFS H R HTGEKPY+C C K+F + L
Sbjct: 5 SSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLIN 60
Query: 1215 HVRTHTDE 1222
H R HT
Sbjct: 61 HQRIHTSG 68
Score = 79.4 bits (197), Expect = 2e-18
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
H+ E+P+ C C ++F+ S+I H R HTGEKPY C E C K+F+ + NH RI
Sbjct: 9 HSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRI 64
Query: 846 HSGEKPY 852
H+
Sbjct: 65 HTSGPSS 71
Score = 76.7 bits (190), Expect = 2e-17
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
C EC K FS + + H R+H+G +PYKC C KAFS H R HT
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 62.5 bits (153), Expect = 2e-12
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHK 901
IHSGEKPY C +C K F+ S L +H VH+ +P+ C C +++ Q L H+
Sbjct: 5 SSGIHSGEKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Query: 902 KT 903
+
Sbjct: 63 RI 64
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 84.0 bits (208), Expect = 7e-20
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 816 HTGEKPYVCGEAGCDKSFASATNYKNHMRIHS---GEKPYVCQVRDCQKRFTEYSSLYKH 872
+G C C + + H R H+ + C+ C KRF + S+ H
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAH 57
Query: 873 TLVHSDIRPFICDRCP 888
Sbjct: 58 RSKSHPALLLAPQESS 73
Score = 84.0 bits (208), Expect = 8e-20
Identities = 11/73 (15%), Positives = 16/73 (21%), Gaps = 7/73 (9%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHT---GEKPYVCGEAGCDKSFASATNYKNH 842
+ C + C + H R H + C C K F + H
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAH 57
Query: 843 MRIHSGEKPYVCQ 855
Q
Sbjct: 58 RSKSHPALLLAPQ 70
Score = 82.8 bits (205), Expect = 2e-19
Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT---GEKPYRCAHEFCSKSFKTSGDLQKH 1215
SG +C E C + S H R H + C EFC K F+ + H
Sbjct: 2 SSGSSGLQC--EICGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAH 57
Query: 1216 VRTHTDE 1222
Sbjct: 58 RSKSHPA 64
Score = 70.1 bits (172), Expect = 5e-15
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 6/71 (8%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHS---GIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
C C T + H R H+ + C E+C K F S AH
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPC--EFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 1196 RCAHEFCSKSF 1206
E S
Sbjct: 68 AP-QESSGPSS 77
Score = 43.2 bits (102), Expect = 2e-05
Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 5/45 (11%)
Query: 786 HTS---ERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEA 827
H FPC C + F + H E+
Sbjct: 30 HAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQES 72
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 82.4 bits (204), Expect = 1e-19
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQ 855
+ TGEKP+ C GC F+ + H R HSG KP
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 73.1 bits (180), Expect = 2e-16
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKP+ C C F S +L +H R+H+
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV 40
Score = 71.6 bits (176), Expect = 8e-16
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
+G +P+ C C FS H R+H+G KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 66.6 bits (163), Expect = 5e-14
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 885
+ +GEKP+ C C RF+ L +H HS ++P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 65.4 bits (160), Expect = 1e-13
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+PF C GC F+ S+ H R+H+G KP
Sbjct: 7 GTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 41.1 bits (97), Expect = 4e-05
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
P C FS + + H R HSG++P
Sbjct: 18 PGCGWRFSRSDELSRHRRSHSGVKPSGP 45
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme,
ATP-binding, DNA-binding, H nucleotide-binding, serine
protease, stress respo; 2.60A {Escherichia coli}
Length = 252
Score = 88.7 bits (221), Expect = 1e-19
Identities = 38/124 (30%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 155 ALMQEVIKTVRDIISMNP-LYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQA 213
L++ I I +N + E L L +D+P LAD AA + ++Q+
Sbjct: 136 VLVRTAISQFEGYIKLNKKIPPEVLTSLNS------IDDPARLADTIAAHMPLKLADKQS 189
Query: 214 ILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELG 273
+LE D+ +RL +++++ E++L +++++I V++++++ R+Y L EQ+KAI+KELG
Sbjct: 190 VLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELG 249
Query: 274 LEKD 277
E D
Sbjct: 250 -EMD 252
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 76.0 bits (188), Expect = 2e-17
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPY 852
+ GEKPY C C F K+H+RIH+G P
Sbjct: 2 SSGSSGGEKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 66.4 bits (163), Expect = 4e-14
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ GEKPY C E C F+ L+ H+R HT
Sbjct: 1 GSSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGS 37
Score = 64.4 bits (158), Expect = 2e-13
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
G +PY C E C F + K+H+R HTG P
Sbjct: 2 SSGSSGGEKPYPC--EICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 57.5 bits (140), Expect = 6e-11
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPY 822
E+P+PC + C F K H+R HTG P
Sbjct: 6 SGGEKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 882
GEKPY C++ C RF +L H +H+ P
Sbjct: 2 SSGSSGGEKPYPCEI--CGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPY 1165
C C F +K HLRIH+G P
Sbjct: 14 CEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 74.4 bits (184), Expect = 7e-17
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TG KPYVC E C K+F S + H R H+GE
Sbjct: 3 SGSSGTGMKPYVCNE--CGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 63.3 bits (155), Expect = 5e-13
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G++PY C C KAF ++ H RTHTGE
Sbjct: 3 SGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 59.4 bits (145), Expect = 1e-11
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TG KPY C C K+F++ L H RTHT E
Sbjct: 2 SSGSSGTGMKPYVCNE--CGKAFRSKSYLIIHTRTHTGE 38
Score = 54.0 bits (131), Expect = 1e-09
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
T +P+ C C ++F + + +H RTHTGE G
Sbjct: 7 GTGMKPYVCNE--CGKAFRSKSYLIIHTRTHTGESGPSSG 44
Score = 51.3 bits (124), Expect = 9e-09
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +G KPYVC +C K F S L HT H+
Sbjct: 2 SSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 45.9 bits (110), Expect = 7e-07
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F S ++ +H R H+G
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 1e-16
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKPY C E C K+F+ + H R H+GEKP
Sbjct: 2 SSGSSGSGEKPYGCNE--CGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 65.2 bits (160), Expect = 1e-13
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +PY C C K FS + AH RTHTGEKP
Sbjct: 2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + +GEKPY C +E C K+F L H RTHT E
Sbjct: 2 SSGSSGSGEKPYGC-NE-CGKTFSQKSILSAHQRTHTGE 38
Score = 51.8 bits (125), Expect = 7e-09
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGE 826
+ E+P+ C C ++F+ +I H RTHTGEKP
Sbjct: 7 GSGEKPYGCNE--CGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 50.6 bits (122), Expect = 2e-08
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGEKPY C +C K F++ S L H H+ +P
Sbjct: 3 SGSSGSGEKPYGCN--ECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-07
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC KTFS + H R H+G +P
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 1e-16
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP+ C C KSF + H +H+ EKP
Sbjct: 2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 64.4 bits (158), Expect = 2e-13
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +P+KC + C K+F + H HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKP++C C KSF L +H HT E
Sbjct: 2 SSGSSGTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTAE 38
Score = 52.9 bits (128), Expect = 3e-09
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 885
+ +GEKP+ C C K F S L +H++VH+ +P
Sbjct: 2 SSGSSGTGEKPFKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+PF C + C +SF + H HT EKP
Sbjct: 7 GTGEKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-06
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K+F + H +H+ +P
Sbjct: 15 CDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 73.7 bits (182), Expect = 1e-16
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K+F + +N H R H+GE
Sbjct: 2 SSGSSGTGEKPYECNE--CQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 65.2 bits (160), Expect = 1e-13
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PY+C C+KAF+T+ + H RTHTGE
Sbjct: 2 SSGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 59.0 bits (144), Expect = 2e-11
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY C C K+F T +L H RTHT E
Sbjct: 2 SSGSSGTGEKPYECNE--CQKAFNTKSNLMVHQRTHTGE 38
Score = 52.9 bits (128), Expect = 3e-09
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
T E+P+ C C ++F T + VH RTHTGE G
Sbjct: 7 GTGEKPYECN--ECQKAFNTKSNLMVHQRTHTGESGPSSG 44
Score = 51.3 bits (124), Expect = 1e-08
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +CQK F S+L H H+
Sbjct: 3 SGSSGTGEKPYECN--ECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 45.9 bits (110), Expect = 8e-07
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC+K F++ ++ VH R H+G
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 1e-16
Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY CGE C K+FA N H RIH+GEKP
Sbjct: 3 SGSSGTGEKPYRCGE--CGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 64.4 bits (158), Expect = 2e-13
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C C KAF+ + + H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 56.0 bits (136), Expect = 2e-10
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPYRC C K+F +L +H R HT E
Sbjct: 2 SSGSSGTGEKPYRCGE--CGKAFAQKANLTQHQRIHTGE 38
Score = 50.2 bits (121), Expect = 3e-08
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY C +C K F + ++L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPYRCG--ECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 9e-08
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++F H R HTGEKP
Sbjct: 7 GTGEKPYRCGE--CGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ ++ H RIH+G +P
Sbjct: 15 CGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.7 bits (182), Expect = 1e-16
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C + C K+F + H + H+GE+
Sbjct: 3 SGSSGTGEKPYKCSD--CGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 64.1 bits (157), Expect = 3e-13
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC C KAF+ + H ++HTGE+
Sbjct: 3 SGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 59.1 bits (144), Expect = 2e-11
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY+C+ C K+F L H ++HT E
Sbjct: 3 SGSSGTGEKPYKCSD--CGKAFTRKSGLHIHQQSHTGE 38
Score = 52.5 bits (127), Expect = 3e-09
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++FT + +H ++HTGE+
Sbjct: 7 GTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 52.5 bits (127), Expect = 3e-09
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY C DC K FT S L+ H H+ R
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 46.0 bits (110), Expect = 9e-07
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C K F+ + +H + H+G R
Sbjct: 15 CSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 73.3 bits (181), Expect = 1e-16
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPY 852
+ GEKPY C C F + + H+ IH+G P
Sbjct: 2 SSGSSGGEKPYKCET--CGARFVQVAHLRAHVLIHTGSGPS 40
Score = 64.5 bits (158), Expect = 2e-13
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ GEKPY+C E C F L+ HV HT
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGS 37
Score = 62.2 bits (152), Expect = 1e-12
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
G +PYKC E C F +AH+ HTG P
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 52.9 bits (128), Expect = 3e-09
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPY 822
E+P+ C C F + H+ HTG P
Sbjct: 6 SGGEKPYKCET--CGARFVQVAHLRAHVLIHTGSGPS 40
Score = 49.4 bits (119), Expect = 4e-08
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
GEKPY C+ C RF + + L H L+H
Sbjct: 2 SSGSSGGEKPYKCE--TCGARFVQVAHLRAHVLIH 34
Score = 44.4 bits (106), Expect = 2e-06
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPY 1165
C C F H++ H+ IH+G P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 73.4 bits (181), Expect = 2e-16
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQ 855
+ +GEKP+ C E C K F + + +H R HSGEKP
Sbjct: 3 SGSSGSGEKPFKCEE--CGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 63.0 bits (154), Expect = 6e-13
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +P+KC E C K F T +H R+H+GEKP
Sbjct: 3 SGSSGSGEKPFKC--EECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 59.5 bits (145), Expect = 1e-11
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + +GEKP++C E C K F T+ H R+H+ E
Sbjct: 2 SSGSSGSGEKPFKC-EE-CGKGFYTNSQCYSHQRSHSGE 38
Score = 54.1 bits (131), Expect = 9e-10
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 885
+ SGEKP+ C+ +C K F S Y H HS +P
Sbjct: 2 SSGSSGSGEKPFKCE--ECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 51.8 bits (125), Expect = 7e-09
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+PF C C + F T++ H R+H+GEKP
Sbjct: 7 GSGEKPFKCEE--CGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-07
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F + H R HSG +P
Sbjct: 15 CEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.4 bits (181), Expect = 2e-16
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ GEKPY C E C K+F+S + HMR HSGEKP
Sbjct: 3 SGSSGAGEKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 65.6 bits (161), Expect = 9e-14
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PY C C KAFS++ H+RTH+GEKP
Sbjct: 3 SGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 57.9 bits (141), Expect = 4e-11
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + GEKPY C+ C K+F + L H+RTH+ E
Sbjct: 2 SSGSSGAGEKPYGCSE--CGKAFSSKSYLIIHMRTHSGE 38
Score = 52.2 bits (126), Expect = 4e-09
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY C +C K F+ S L H HS +P
Sbjct: 2 SSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 51.4 bits (124), Expect = 8e-09
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
E+P+ C C ++F++ + +H+RTH+GEKP
Sbjct: 7 GAGEKPYGCSE--CGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 47.2 bits (113), Expect = 3e-07
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FSS ++ +H+R HSG +P
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-16
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQ 855
+ TGE+PY+C C K+F +N H +IH+GEKP
Sbjct: 3 SGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 64.0 bits (157), Expect = 3e-13
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G RPY C V C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 58.7 bits (143), Expect = 3e-11
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGE+PY C C K+F +L KH + HT E
Sbjct: 2 SSGSSGTGERPYICTV--CGKAFTDRSNLIKHQKIHTGE 38
Score = 52.5 bits (127), Expect = 4e-09
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GE+PY+C C K FT+ S+L KH +H+ +P
Sbjct: 3 SGSSGTGERPYICT--VCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 2e-08
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T ERP+ C V C ++FT + H + HTGEKP
Sbjct: 7 GTGERPYICTV--CGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 3e-06
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K F+ ++ H +IH+G +P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 75.6 bits (185), Expect = 2e-16
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 810 KVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI--HSGEKPYVC-QVRDCQKRFTEY 866
K++ TG + C + C ++ + HM H + + +
Sbjct: 8 KLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 867 SSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVH-KKTNHRESK 909
SL + + C C S+ L L+VH KT H +
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 58.6 bits (141), Expect = 1e-10
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 1139 CPECKKTFSSAHHMKVHLRI--HSGIRPYKCPVEY-CEKAFSTQYSRKAHIRTHTGEKPY 1195
C +C + + + VH+ H ++ + + S +K
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 1196 RCAHEFCSKSFKTSGDLQKHV--RTHTDE--FQMSG 1227
+C +C SF++ DL H+ H + SG
Sbjct: 82 KC--MYCGHSFESLQDLSVHMIKTKHYQKVSGPSSG 115
Score = 54.4 bits (130), Expect = 5e-09
Identities = 15/90 (16%), Positives = 22/90 (24%), Gaps = 7/90 (7%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRT--HTGEKPYVCGEAG-CDKSFASATNYKNH 842
T F C C ++ T VH+ H + + S +
Sbjct: 14 FTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
Query: 843 MRIHSGEKPYVCQVRDCQKRFTEYSSLYKH 872
+K C C F L H
Sbjct: 72 EGKEDAQKVLKCMY--CGHSFESLQDLSVH 99
Score = 52.8 bits (126), Expect = 2e-08
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 1147 SSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSF 1206
SS K++ I +G ++C + C A+ T H+ TG +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRC--KDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPK 58
Query: 1207 KTSGDLQKHVRTHTDEFQMSGLF 1229
+ S ++ + + +
Sbjct: 59 RWSKPRKRSLLEMEGKEDAQKVL 81
Score = 41.7 bits (97), Expect = 2e-04
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 867 SSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVH-KKTNHRESKNKKPSN 915
SS + + + F C C +Y L L VH +T H N + N
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN 54
Score = 28.2 bits (62), Expect = 6.1
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 1102 ELEDEDLMEEEGGKQTGSSGGGGGGTVKKSTSSENNV--CPECKKTFSSAHHMKVHLR 1157
D++ + + S + V C C +F S + VH+
Sbjct: 44 HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 73.3 bits (181), Expect = 2e-16
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K+F +N H +IH+GEKP
Sbjct: 3 SGSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 64.8 bits (159), Expect = 2e-13
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 59.1 bits (144), Expect = 2e-11
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPYRCA C K+F +L H + HT E
Sbjct: 2 SSGSSGTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTGE 38
Score = 51.7 bits (125), Expect = 7e-09
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +C K FT+ S+L+ H +H+ +P
Sbjct: 3 SGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++FT + H + HTGEKP
Sbjct: 7 GTGEKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ ++ H +IH+G +P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 73.3 bits (181), Expect = 2e-16
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ GEK + C E CD F+ A++ + H +H GEKP
Sbjct: 3 SGSSGMGEKTWKCRE--CDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 62.2 bits (152), Expect = 1e-12
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
G + +KC C+ FS S + H H GEKP
Sbjct: 3 SGSSGMGEKTWKC--RECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 57.6 bits (140), Expect = 7e-11
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + GEK ++C C F + L+ H H E
Sbjct: 2 SSGSSGMGEKTWKCRE--CDMCFSQASSLRLHQNVHVGE 38
Score = 51.8 bits (125), Expect = 6e-09
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
E+ + C CD F+ ++ ++H H GEKP
Sbjct: 7 GMGEKTWKCRE--CDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 49.5 bits (119), Expect = 5e-08
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR 886
GEK + C+ +C F++ SSL H VH +P
Sbjct: 3 SGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 47.5 bits (114), Expect = 2e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC FS A +++H +H G +P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 73.0 bits (180), Expect = 2e-16
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP+ C E C +F+ + + H+R H P
Sbjct: 3 SGSSGTGEKPFQCKE--CGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 66.1 bits (162), Expect = 6e-14
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKP++C C +F S L KH+R+H
Sbjct: 2 SSGSSGTGEKPFQCKE--CGMNFSWSCSLFKHLRSHERT 38
Score = 63.8 bits (156), Expect = 4e-13
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +P++C + C FS S H+R+H P +
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 52.6 bits (127), Expect = 4e-09
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 885
+GEKP+ C ++C F+ SL+KH H P
Sbjct: 3 SGSSGTGEKPFQC--KECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 51.8 bits (125), Expect = 7e-09
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
T E+PF C C +F+ S H+R+H P
Sbjct: 7 GTGEKPFQCKE--CGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 43.0 bits (102), Expect = 9e-06
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC FS + + HLR H P
Sbjct: 15 CKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 73.7 bits (182), Expect = 2e-16
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTD 1221
R + C V C +AF+ Q K H R+HT EKPY C C+++F L +H + H+
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSG 56
Query: 1222 E 1222
Sbjct: 57 N 57
Score = 72.5 bits (179), Expect = 5e-16
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEK 1193
VC C + F+ H+K H R H+ +PY C + C +AF+ + H + H+G
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGNL 58
Score = 71.4 bits (176), Expect = 1e-15
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKH 872
+ +VC C ++FA + K H R H+ EKPY C C + FT L +H
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRH 49
Score = 71.4 bits (176), Expect = 1e-15
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHM-RIHSG 848
R F C V C R+F K H R+HT EKPY CG C+++F H +IHSG
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSG 56
Query: 849 EK 850
Sbjct: 57 NL 58
Score = 42.9 bits (102), Expect = 1e-05
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHI-RTHTGEK 820
HT+E+P+PC + C+R+FT ++ H + H+G
Sbjct: 25 HTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSGNL 58
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 2e-16
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C C K+F+ + H R+HSGEKP
Sbjct: 2 SSGSSGTGEKPYECDV--CRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 66.8 bits (164), Expect = 3e-14
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C + C KAFS S H R H+GEKP +
Sbjct: 2 SSGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 57.1 bits (139), Expect = 8e-11
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY C C K+F L +H R H+ E
Sbjct: 3 SGSSGTGEKPYECDV--CRKAFSHHASLTQHQRVHSGE 38
Score = 51.4 bits (124), Expect = 8e-09
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C C+K F+ ++SL +H VHS +P
Sbjct: 3 SGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C V C ++F+ H R H+GEKP
Sbjct: 7 GTGEKPYECDV--CRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C+K FS + H R+HSG +P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 2e-16
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY+C E C K+F +N H +IH+ +KP
Sbjct: 3 SGSSGTGEKPYICAE--CGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 63.7 bits (156), Expect = 4e-13
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY C C KAF+ + + H + HT +KP +
Sbjct: 3 SGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 59.1 bits (144), Expect = 2e-11
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY CA C K+F +L KH + HT +
Sbjct: 2 SSGSSGTGEKPYICAE--CGKAFTIRSNLIKHQKIHTKQ 38
Score = 54.8 bits (133), Expect = 5e-10
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY+C +C K FT S+L KH +H+ +P
Sbjct: 2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 48.7 bits (117), Expect = 8e-08
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++FT + H + HT +KP
Sbjct: 7 GTGEKPYICAE--CGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 44.4 bits (106), Expect = 2e-06
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
+C EC K F+ ++ H +IH+ +P
Sbjct: 14 ICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 2e-16
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGE P++C E C K F TN H +IH+GE+P
Sbjct: 3 SGSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 61.7 bits (151), Expect = 2e-12
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G P+ C C K F+ + + H + HTGE+P
Sbjct: 3 SGSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 58.3 bits (142), Expect = 4e-11
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGE P+ C+ C K F +L H + HT E
Sbjct: 2 SSGSSGTGENPFICSE--CGKVFTHKTNLIIHQKIHTGE 38
Score = 53.3 bits (129), Expect = 2e-09
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GE P++C +C K FT ++L H +H+ RP
Sbjct: 2 SSGSSGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 51.3 bits (124), Expect = 1e-08
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E PF C C + FT +H + HTGE+P
Sbjct: 7 GTGENPFICSE--CGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ ++ +H +IH+G RP
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 2e-16
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GE+PY C E C K+F ++ H++ H EK
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 62.9 bits (154), Expect = 7e-13
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
SG RPY C C K F H++ H EK +
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 56.0 bits (136), Expect = 2e-10
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ +GE+PY C C K+F L +H++ H E
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLIEHLKRHFRE 38
Score = 52.5 bits (127), Expect = 4e-09
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGE+PY C +C K F +S L +H H +
Sbjct: 3 SGSSGSGERPYGCN--ECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 50.6 bits (122), Expect = 2e-08
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ ERP+ C C ++F + H++ H EK
Sbjct: 7 GSGERPYGCNE--CGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F H+ HL+ H +
Sbjct: 15 CNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 73.0 bits (180), Expect = 3e-16
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C KSF A+ H R+HSGEKP
Sbjct: 3 SGSSGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 63.0 bits (154), Expect = 8e-13
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PY C + C K+F H R H+GEKP
Sbjct: 3 SGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 58.4 bits (142), Expect = 3e-11
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY C C KSF+ + L KH R H+ E
Sbjct: 2 SSGSSGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSGE 38
Score = 52.6 bits (127), Expect = 4e-09
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C ++C K F S L KH VHS +P
Sbjct: 3 SGSSGTGEKPYNC--KECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 50.3 bits (121), Expect = 2e-08
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGE 826
T E+P+ C C +SF ++ H R H+GEKP
Sbjct: 7 GTGEKPYNCKE--CGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 46.4 bits (111), Expect = 6e-07
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K+F A + H R+HSG +P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.9 bits (180), Expect = 3e-16
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY+C E C KSF ++ H RIH+GEKP
Sbjct: 3 SGSSGTGEKPYICNE--CGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 60.6 bits (148), Expect = 5e-12
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PY C C K+F + H R HTGEKP
Sbjct: 3 SGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 57.9 bits (141), Expect = 5e-11
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY C C KSF L +H R HT E
Sbjct: 2 SSGSSGTGEKPYICNE--CGKSFIQKSHLNRHRRIHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGE 826
T E+P+ C C +SF + H R HTGEKP
Sbjct: 7 GTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 49.0 bits (118), Expect = 6e-08
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY+C +C K F + S L +H +H+ +P
Sbjct: 3 SGSSGTGEKPYICN--ECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K+F H+ H RIH+G +P
Sbjct: 15 CNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 72.6 bits (179), Expect = 3e-16
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP+ C E C K F+ + H ++H+GEKP
Sbjct: 3 SGSSGTGEKPFKCVE--CGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 65.6 bits (161), Expect = 8e-14
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +P+KC C K FS + + H + HTGEKP +
Sbjct: 3 SGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 57.9 bits (141), Expect = 4e-11
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKP++C C K F L H + HT E
Sbjct: 2 SSGSSGTGEKPFKCVE--CGKGFSRRSALNVHHKLHTGE 38
Score = 51.4 bits (124), Expect = 9e-09
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKP+ C +C K F+ S+L H +H+ +P
Sbjct: 2 SSGSSGTGEKPFKCV--ECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 2e-08
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+PF C + C + F+ + VH + HTGEKP
Sbjct: 7 GTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FS + VH ++H+G +P
Sbjct: 15 CVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.6 bits (179), Expect = 3e-16
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C + C KSF + + H + H+GE+
Sbjct: 3 SGSSGTGEKPYKCSD--CGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 63.3 bits (155), Expect = 5e-13
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC C K+F+ + + H + HTGE+
Sbjct: 3 SGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 59.5 bits (145), Expect = 1e-11
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C+ C KSF L+ H + HT E
Sbjct: 2 SSGSSGTGEKPYKCSD--CGKSFTWKSRLRIHQKCHTGE 38
Score = 53.3 bits (129), Expect = 2e-09
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR 886
+ +GEKPY C DC K FT S L H H+ R
Sbjct: 2 SSGSSGTGEKPYKCS--DCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 52.5 bits (127), Expect = 3e-09
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C +SFT + ++H + HTGE+
Sbjct: 7 GTGEKPYKCSD--CGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 46.0 bits (110), Expect = 6e-07
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C K+F+ +++H + H+G R
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.5 bits (179), Expect = 3e-16
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP+ C E C K+F + +N H R H+GEKP
Sbjct: 3 SGSSGTGEKPFECSE--CQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 5e-13
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +P++C C+KAF+T+ + H RTHTGEKP
Sbjct: 3 SGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 59.4 bits (145), Expect = 1e-11
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKP+ C+ C K+F T +L H RTHT E
Sbjct: 2 SSGSSGTGEKPFECSE--CQKAFNTKSNLIVHQRTHTGE 38
Score = 51.7 bits (125), Expect = 7e-09
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+PF C C ++F T + VH RTHTGEKP
Sbjct: 7 GTGEKPFECSE--CQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 2e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKP+ C +CQK F S+L H H+ +P
Sbjct: 2 SSGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 2e-06
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC+K F++ ++ VH R H+G +P
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 72.6 bits (179), Expect = 3e-16
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K F + H +H+GEKP
Sbjct: 3 SGSSGTGEKPYKCEE--CGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 64.1 bits (157), Expect = 3e-13
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC E C K F + H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--EECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 59.1 bits (144), Expect = 1e-11
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C C K F DL H HT E
Sbjct: 2 SSGSSGTGEKPYKCEE--CGKGFICRRDLYTHHMVHTGE 38
Score = 53.7 bits (130), Expect = 1e-09
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY C+ +C K F LY H +VH+ +P
Sbjct: 2 SSGSSGTGEKPYKCE--ECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 8e-08
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAG 828
T E+P+ C C + F H HTGEKP +G
Sbjct: 7 GTGEKPYKCEE--CGKGFICRRDLYTHHMVHTGEKPSGP-SSG 46
Score = 45.6 bits (109), Expect = 1e-06
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F + H +H+G +P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.6 bits (179), Expect = 3e-16
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEK Y C E C KSF+ A H R+HSGEKP
Sbjct: 3 SGSSGTGEKLYNCKE--CGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 63.7 bits (156), Expect = 4e-13
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G + Y C + C K+FS H R H+GEKP
Sbjct: 3 SGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEK Y C E C KSF + L KH R H+ E
Sbjct: 2 SSGSSGTGEKLYNC-KE-CGKSFSRAPCLLKHERLHSGE 38
Score = 53.3 bits (129), Expect = 2e-09
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEK Y C ++C K F+ L KH +HS +P
Sbjct: 2 SSGSSGTGEKLYNC--KECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 7e-08
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+ + C C +SF+ + H R H+GEKP
Sbjct: 7 GTGEKLYNCKE--CGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K+FS A + H R+HSG +P
Sbjct: 15 CKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.6 bits (179), Expect = 3e-16
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C + C KSF + H RIH+GE P
Sbjct: 2 SSGSSGTGEKPYECSD--CGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 64.1 bits (157), Expect = 3e-13
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C C K+F + H R HTGE P +
Sbjct: 2 SSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 58.3 bits (142), Expect = 3e-11
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY C+ C KSF L H R HT E
Sbjct: 2 SSGSSGTGEKPYECSD--CGKSFIKKSQLHVHQRIHTGE 38
Score = 51.8 bits (125), Expect = 7e-09
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C DC K F + S L+ H +H+ P
Sbjct: 3 SGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 51.0 bits (123), Expect = 1e-08
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C +SF + VH R HTGE P
Sbjct: 7 GTGEKPYECS--DCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 46.4 bits (111), Expect = 6e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C K+F + VH RIH+G P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 72.2 bits (178), Expect = 4e-16
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ G PY C + C+KSF+ H R+H+ EKP
Sbjct: 3 SGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 63.3 bits (155), Expect = 6e-13
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G+ PYKC CEK+FS + H R HT EKP
Sbjct: 3 SGSSGAGVNPYKC--SQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 56.0 bits (136), Expect = 2e-10
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + G PY+C+ C KSF L H R HT E
Sbjct: 2 SSGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTRE 38
Score = 51.0 bits (123), Expect = 1e-08
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
P+ C C++SF+ VH R HT EKP
Sbjct: 7 GAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 48.7 bits (117), Expect = 9e-08
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C+K+FS + VH R+H+ +P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+G PY C C+K F+ L H +H+ +P
Sbjct: 3 SGSSGAGVNPYKCS--QCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 4e-16
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ GEK Y C C K F+ +++ + H R+H+GEKP
Sbjct: 2 SSGSSGMGEKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 66.0 bits (162), Expect = 6e-14
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
G + YKC + C K FS + H R HTGEKP
Sbjct: 2 SSGSSGMGEKCYKC--DVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 57.5 bits (140), Expect = 7e-11
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ GEK Y+C C K F S LQ H R HT E
Sbjct: 3 SGSSGMGEKCYKCDV--CGKEFSQSSHLQTHQRVHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
E+ + C V C + F+ S+ + H R HTGEKP
Sbjct: 7 GMGEKCYKCDV--CGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 2e-08
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
GEK Y C C K F++ S L H VH+ +P
Sbjct: 3 SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 6e-07
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K FS + H++ H R+H+G +P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 4e-16
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C + C K + S N H ++H+GE+P
Sbjct: 3 SGSSGTGEKPYKCEK--CGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 65.2 bits (160), Expect = 1e-13
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC E C K ++++++ H + HTGE+P
Sbjct: 3 SGSSGTGEKPYKC--EKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 57.5 bits (140), Expect = 6e-11
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C C K + + +L H + HT E
Sbjct: 2 SSGSSGTGEKPYKCEK--CGKGYNSKFNLDMHQKVHTGE 38
Score = 51.0 bits (123), Expect = 1e-08
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C+ C K + +L H VH+ RP
Sbjct: 3 SGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 49.8 bits (120), Expect = 3e-08
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C + + + +H + HTGE+P
Sbjct: 7 GTGEKPYKCEK--CGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C K ++S ++ +H ++H+G RP
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 72.1 bits (178), Expect = 4e-16
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP+ C E C KSF+ ++ H RIH+GEKP
Sbjct: 3 SGSSGTGEKPFECAE--CGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 64.8 bits (159), Expect = 2e-13
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +P++C C K+FS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 57.9 bits (141), Expect = 5e-11
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKP+ CA C KSF S L H R HT E
Sbjct: 3 SGSSGTGEKPFECAE--CGKSFSISSQLATHQRIHTGE 38
Score = 51.0 bits (123), Expect = 1e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKP+ C +C K F+ S L H +H+ +P
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 50.6 bits (122), Expect = 2e-08
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+PF C C +SF+ S+ H R HTGEKP
Sbjct: 7 GTGEKPFECAE--CGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K+FS + + H RIH+G +P
Sbjct: 15 CAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.1 bits (178), Expect = 4e-16
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKPY C E C K+F T+ H RIH+G +P
Sbjct: 3 SGSSGSGEKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 63.3 bits (155), Expect = 6e-13
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +PYKC C KAF H R HTG +P
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 54.8 bits (133), Expect = 5e-10
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ +GEKPY+C E C K+F L +H R HT
Sbjct: 3 SGSSGSGEKPYKC-SE-CGKAFHRHTHLNEHRRIHTGY 38
Score = 49.8 bits (120), Expect = 3e-08
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGEKPY C +C K F ++ L +H +H+ RP
Sbjct: 3 SGSSGSGEKPYKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 46.3 bits (111), Expect = 5e-07
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+P+ C C ++F H R HTG +P
Sbjct: 7 GSGEKPYKCSE--CGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F H+ H RIH+G RP
Sbjct: 15 CSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 4e-16
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C C K+F + + H+R+H+ E
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 64.1 bits (157), Expect = 3e-13
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY C V C KAF H+R HT E +
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 56.0 bits (136), Expect = 2e-10
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY C C K+F S L +H+R HT E
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQE 38
Score = 51.7 bits (125), Expect = 7e-09
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDR 886
+ +GEKPY C C K F + L +H VH+
Sbjct: 2 SSGSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 49.4 bits (119), Expect = 5e-08
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C V C ++F S H+R HT E
Sbjct: 7 GTGEKPYSCNV--CGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K F + H+ HLR+H+
Sbjct: 15 CNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 4e-16
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKPY C E C K + + H R+H+GEK
Sbjct: 3 SGSSGSGEKPYKCVE--CGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 63.7 bits (156), Expect = 4e-13
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +PYKC C K + + H R HTGEK
Sbjct: 3 SGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 59.1 bits (144), Expect = 2e-11
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + +GEKPY+C C K +K DL H R HT E
Sbjct: 2 SSGSSGSGEKPYKCVE--CGKGYKRRLDLDFHQRVHTGE 38
Score = 51.0 bits (123), Expect = 1e-08
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICD 885
+ SGEKPY C +C K + L H VH+ +
Sbjct: 2 SSGSSGSGEKPYKCV--ECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 50.2 bits (121), Expect = 3e-08
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+P+ C C + + H R HTGEK
Sbjct: 7 GSGEKPYKCVE--CGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K + + H R+H+G +
Sbjct: 15 CVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 5e-16
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKPYVC C K+F + H RIH+GEKP
Sbjct: 3 SGSSGSGEKPYVCDY--CGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 5e-13
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
SG +PY C +YC KAF H R HTGEKP +
Sbjct: 3 SGSSGSGEKPYVC--DYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 56.8 bits (138), Expect = 1e-10
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ +GEKPY C + C K+F S +L +H R HT E
Sbjct: 3 SGSSGSGEKPYVCDY--CGKAFGLSAELVRHQRIHTGE 38
Score = 52.9 bits (128), Expect = 3e-09
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGEKPYVC C K F + L +H +H+ +P
Sbjct: 3 SGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 2e-07
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+P+ C C ++F S H R HTGEKP
Sbjct: 7 GSGEKPYVCDY--CGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K F + + H RIH+G +P
Sbjct: 15 CDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 5e-16
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP+ C + C K+F+ H RIH+GEKP
Sbjct: 3 SGSSGTGEKPFDCID--CGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 64.8 bits (159), Expect = 1e-13
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +P+ C C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 57.1 bits (139), Expect = 8e-11
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKP+ C C K+F L +H R HT E
Sbjct: 2 SSGSSGTGEKPFDCID--CGKAFSDHIGLNQHRRIHTGE 38
Score = 51.7 bits (125), Expect = 7e-09
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKP+ C DC K F+++ L +H +H+ +P
Sbjct: 3 SGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 9e-08
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+PF C C ++F+ H R HTGEKP
Sbjct: 7 GTGEKPFDCID--CGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C K FS + H RIH+G +P
Sbjct: 15 CIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 5e-16
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQ 855
+ TGEKPY C C KSF ++ H RIH+GEKP
Sbjct: 3 SGSSGTGEKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 64.5 bits (158), Expect = 2e-13
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC + C K+F S H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 57.1 bits (139), Expect = 9e-11
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C + C KSF+ L H R HT E
Sbjct: 2 SSGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGE 826
T E+P+ C V C +SF + VH R HTGEKP
Sbjct: 7 GTGEKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C C K F SSL H +H+ +P
Sbjct: 3 SGSSGTGEKPYKC--DVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 6e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K+F + VH RIH+G +P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 6e-16
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K+F + + H RIH+GEKP
Sbjct: 3 SGSSGTGEKPYNCEE--CGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 6e-13
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PY C E C KAF + H R HTGEKP
Sbjct: 3 SGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 57.2 bits (139), Expect = 9e-11
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY C C K+F LQ+H R HT E
Sbjct: 2 SSGSSGTGEKPYNCEE--CGKAFIHDSQLQEHQRIHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +C K F S L +H +H+ +P
Sbjct: 3 SGSSGTGEKPYNC--EECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++F + + H R HTGEKP
Sbjct: 7 GTGEKPYNCEE--CGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 2e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F ++ H RIH+G +P
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 6e-16
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C C K+F+ + H RIHSG+KP
Sbjct: 2 SSGSSGTGEKPYECSV--CGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 67.9 bits (167), Expect = 1e-14
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C C KAFS + S H R H+G+KP +
Sbjct: 2 SSGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 57.5 bits (140), Expect = 6e-11
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY C+ C K+F L H R H+ +
Sbjct: 3 SGSSGTGEKPYECSV--CGKAFSHRQSLSVHQRIHSGK 38
Score = 52.1 bits (126), Expect = 4e-09
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C C K F+ SL H +HS +P
Sbjct: 3 SGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 49.4 bits (119), Expect = 4e-08
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C V C ++F+ VH R H+G+KP
Sbjct: 7 GTGEKPYECSV--CGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 46.0 bits (110), Expect = 7e-07
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K FS + VH RIHSG +P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 6e-16
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGE+P+ C E C KSF + + H RIH+GEKP
Sbjct: 3 SGSSGTGERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 4e-13
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G RP+KC C K+F H R HTGEKP +
Sbjct: 3 SGSSGTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 55.2 bits (134), Expect = 4e-10
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGE+P++C +E C KSF S L +H R HT E
Sbjct: 3 SGSSGTGERPHKC-NE-CGKSFIQSAHLIQHQRIHTGE 38
Score = 51.0 bits (123), Expect = 1e-08
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GE+P+ C +C K F + + L +H +H+ +P
Sbjct: 2 SSGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 6e-08
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T ERP C C +SF S H R HTGEKP
Sbjct: 7 GTGERPHKC--NECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 5e-07
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K+F + H+ H RIH+G +P
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 6e-16
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGE PY C E C K+F+ +H R H+GEKP
Sbjct: 2 SSGSSGTGENPYECHE--CGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 67.9 bits (167), Expect = 1e-14
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G PY+C C KAFS +Y +H RTH GEKP +
Sbjct: 2 SSGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 57.1 bits (139), Expect = 8e-11
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGE PY C HE C K+F L H RTH E
Sbjct: 3 SGSSGTGENPYEC-HE-CGKAFSRKYQLISHQRTHAGE 38
Score = 49.8 bits (120), Expect = 4e-08
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GE PY C +C K F+ L H H+ +P
Sbjct: 3 SGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 49.4 bits (119), Expect = 4e-08
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E P+ C C ++F+ H RTH GEKP
Sbjct: 7 GTGENPYECHE--CGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 46.3 bits (111), Expect = 5e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FS + + H R H+G +P
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 7e-16
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C C K+F + H + H+GEKP
Sbjct: 3 SGSSGTGEKPYECKV--CSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 61.8 bits (151), Expect = 2e-12
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PY+C + C KAF+ + H +THTGEKP
Sbjct: 3 SGSSGTGEKPYEC--KVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY C CSK+F L +H +THT E
Sbjct: 2 SSGSSGTGEKPYECKV--CSKAFTQKAHLAQHQKTHTGE 38
Score = 52.5 bits (127), Expect = 4e-09
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEA 827
T E+P+ C V C ++FT H +THTGEKP
Sbjct: 7 GTGEKPYECKV--CSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
Score = 50.2 bits (121), Expect = 3e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C+ C K FT+ + L +H H+ +P
Sbjct: 3 SGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 5e-07
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K F+ H+ H + H+G +P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 7e-16
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TG+KPY C E C K F ++ H IH+GEKP
Sbjct: 2 SSGSSGTGKKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 66.0 bits (162), Expect = 7e-14
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PYKC C K F+ H HTGEKP +
Sbjct: 2 SSGSSGTGKKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 55.2 bits (134), Expect = 4e-10
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TG+KPY+C C K F + L +H HT E
Sbjct: 2 SSGSSGTGKKPYKCNE--CGKVFTQNSHLARHRGIHTGE 38
Score = 49.4 bits (119), Expect = 5e-08
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+G+KPY C +C K FT+ S L +H +H+ +P
Sbjct: 3 SGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-07
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T ++P+ C C + FT ++ H HTGEKP
Sbjct: 7 GTGKKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 6e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ H+ H IH+G +P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 71.4 bits (176), Expect = 7e-16
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TG+KP+ C C KSF + N H RIH+GEK
Sbjct: 3 SGSSGTGQKPFECTH--CGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 61.8 bits (151), Expect = 2e-12
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +P++C +C K+F + + H R HTGEK
Sbjct: 3 SGSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 59.5 bits (145), Expect = 1e-11
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TG+KP+ C H C KSF+ G+L H R HT E
Sbjct: 2 SSGSSGTGQKPFECTH--CGKSFRAKGNLVTHQRIHTGE 38
Score = 49.8 bits (120), Expect = 3e-08
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +G+KP+ C C K F +L H +H+ +
Sbjct: 2 SSGSSGTGQKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 49.1 bits (118), Expect = 5e-08
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T ++PF C C +SF H R HTGEK
Sbjct: 7 GTGQKPFECT--HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 45.6 bits (109), Expect = 9e-07
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K+F + ++ H RIH+G +
Sbjct: 15 CTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 7e-16
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 811 VHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C C KSF + H +IH+GEKP
Sbjct: 2 SSGSSGTGEKPYECSI--CGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 66.0 bits (162), Expect = 7e-14
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 1154 VHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C C K+F+ + H + HTGEKP +
Sbjct: 2 SSGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 58.3 bits (142), Expect = 3e-11
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY C+ C KSF L H + HT E
Sbjct: 3 SGSSGTGEKPYECSI--CGKSFTKKSQLHVHQQIHTGE 38
Score = 52.9 bits (128), Expect = 3e-09
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C C K FT+ S L+ H +H+ +P
Sbjct: 3 SGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 51.0 bits (123), Expect = 1e-08
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C + C +SFT + VH + HTGEKP
Sbjct: 7 GTGEKPYECSI--CGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 5e-07
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K+F+ + VH +IH+G +P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 71.4 bits (176), Expect = 7e-16
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TG KPY C + C K+F+ + H R H+G KP
Sbjct: 3 SGSSGTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 63.3 bits (155), Expect = 6e-13
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G++PY C C K FS + H R+HTG KP
Sbjct: 3 SGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TG KPY C+ C+K+F L H R+HT
Sbjct: 2 SSGSSGTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHTGV 38
Score = 52.5 bits (127), Expect = 4e-09
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T +P+ C C ++F+ + VH R+HTG KP
Sbjct: 7 GTGVKPYGCSQ--CAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +G KPY C C K F+ S L H H+ ++P
Sbjct: 2 SSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 46.8 bits (112), Expect = 4e-07
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C KTFS + VH R H+G++P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 71.4 bits (176), Expect = 7e-16
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K+F+ T+ H R+H+GEKP
Sbjct: 3 SGSSGTGEKPYECKE--CGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 9e-13
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C + C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 55.6 bits (135), Expect = 3e-10
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY C C K+F + L +H R HT E
Sbjct: 3 SGSSGTGEKPYECKE--CGKAFSQTTHLIQHQRVHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C ++C K F++ + L +H VH+ +P
Sbjct: 3 SGSSGTGEKPYEC--KECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 47.9 bits (115), Expect = 2e-07
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++F+ + H R HTGEKP
Sbjct: 7 GTGEKPYECKE--CGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 5e-07
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FS H+ H R+H+G +P
Sbjct: 15 CKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 7e-16
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K+F + +N H IH+GEKP
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 1e-12
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC C KAF + H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C C K+F+ +L H HT E
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKAFRAHSNLTTHQVIHTGE 38
Score = 49.0 bits (118), Expect = 6e-08
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +C K F +S+L H ++H+ +P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++F + H HTGEKP
Sbjct: 7 GTGEKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F + ++ H IH+G +P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 8e-16
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP+ CGE C KS+ + H R+H+GEKP
Sbjct: 3 SGSSGTGEKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 9e-13
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +P+KC C K+++ + H R HTGEKP +
Sbjct: 3 SGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 55.6 bits (135), Expect = 3e-10
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKP++C E C KS+ L +H R HT E
Sbjct: 3 SGSSGTGEKPFKC-GE-CGKSYNQRVHLTQHQRVHTGE 38
Score = 49.4 bits (119), Expect = 4e-08
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKP+ C +C K + + L +H VH+ +P
Sbjct: 3 SGSSGTGEKPFKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 9e-08
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+PF C C +S+ H R HTGEKP
Sbjct: 7 GTGEKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K+++ H+ H R+H+G +P
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 8e-16
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGE+ Y C E C K+FA + H RIH+GEKP
Sbjct: 3 SGSSGTGERHYECSE--CGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 64.4 bits (158), Expect = 2e-13
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G R Y+C C KAF+ + + H R HTGEKP +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 56.4 bits (137), Expect = 2e-10
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGE+ Y C+ C K+F L H R HT E
Sbjct: 3 SGSSGTGERHYECSE--CGKAFARKSTLIMHQRIHTGE 38
Score = 51.3 bits (124), Expect = 1e-08
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GE+ Y C +C K F S+L H +H+ +P
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T ER + C C ++F + +H R HTGEKP
Sbjct: 7 GTGERHYECS--ECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ + +H RIH+G +P
Sbjct: 15 CSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 71.5 bits (176), Expect = 8e-16
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHM-RIHSGEKPYVCQVRDCQKRFT 864
+ + KPY+C C K F+ + H+ ++H+ E+P+ CQV +
Sbjct: 3 SGSSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPS 52
Score = 65.7 bits (161), Expect = 1e-13
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEKPYRCAHEFCSKSFKT 1208
S +PY C + C K FS HI + HT E+P++C + +
Sbjct: 3 SGSSGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPSS 53
Score = 60.7 bits (148), Expect = 6e-12
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 1139 CPECKKTFSSAHHMKVHL-RIHSGIRPYKCPVEYCEKAFST 1178
C C K FS H+ H+ ++H+ RP+KC + S+
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPSS 53
Score = 59.1 bits (144), Expect = 2e-11
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHI-RTHTGEKPYVCGEAGCDKSFASA 836
+ +P+ C C + F+ + HI + HT E+P+ C +S
Sbjct: 7 GSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPSSG 54
Score = 52.6 bits (127), Expect = 5e-09
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHT-LVHSDIRPFICDRCPRSYRQ 893
+ S KPY+CQ C K F+ L H VH+ RP C
Sbjct: 2 SSGSSGSVGKPYICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 51.0 bits (123), Expect = 1e-08
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHV-RTHTDE 1222
+ + + KPY C C K F L H+ + HT E
Sbjct: 2 SSGSSGSVGKPYICQS--CGKGFSRPDHLNGHIKQVHTSE 39
Score = 30.6 bits (70), Expect = 0.24
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 872 HTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNH 905
S +P+IC C + + + LN H K H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 8e-16
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TG KPY C E C K+F+ + H R+H+GEKP
Sbjct: 3 SGSSGTGGKPYQCNE--CGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 65.2 bits (160), Expect = 1e-13
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGGKPYQC--NECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 55.2 bits (134), Expect = 4e-10
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TG KPY+C C K+F + L +H R HT E
Sbjct: 2 SSGSSGTGGKPYQCNE--CGKAFSQTSKLARHQRVHTGE 38
Score = 51.0 bits (123), Expect = 1e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+G KPY C +C K F++ S L +H VH+ +P
Sbjct: 3 SGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T +P+ C C ++F+ ++ H R HTGEKP
Sbjct: 7 GTGGKPYQCN--ECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 5e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FS + H R+H+G +P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 8e-16
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K+F+ + H RIH+GEKP
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 64.8 bits (159), Expect = 1e-13
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PYKC C KAFS H R HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 55.6 bits (135), Expect = 3e-10
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY+C C K+F + L +H R HT E
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFSQTSKLARHQRIHTGE 38
Score = 51.4 bits (124), Expect = 8e-09
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY C +C K F++ S L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++F+ ++ H R HTGEKP
Sbjct: 7 GTGEKPYKCN--ECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FS + H RIH+G +P
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.5 bits (176), Expect = 9e-16
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K+F ++ H R+H+G++P
Sbjct: 3 SGSSGTGEKPYKCME--CGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 64.9 bits (159), Expect = 2e-13
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PYKC C KAF S H R HTG++P +
Sbjct: 3 SGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 56.4 bits (137), Expect = 2e-10
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C C K+F + +H R HT +
Sbjct: 2 SSGSSGTGEKPYKCME--CGKAFGDNSSCTQHQRLHTGQ 38
Score = 52.6 bits (127), Expect = 4e-09
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY C +C K F + SS +H +H+ RP
Sbjct: 2 SSGSSGTGEKPYKCM--ECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++F ++ H R HTG++P
Sbjct: 7 GTGEKPYKCME--CGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F H R+H+G RP
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 9e-16
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKP+ C E C K+F + +H+RIH+GEKP
Sbjct: 3 SGSSGSGEKPFKCKE--CGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 9e-13
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +P+KC + C KAF +H+R HTGEKP
Sbjct: 3 SGSSGSGEKPFKC--KECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + +GEKP++C C K+F+ + L H+R HT E
Sbjct: 2 SSGSSGSGEKPFKCKE--CGKAFRQNIHLASHLRIHTGE 38
Score = 50.2 bits (121), Expect = 3e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGEKP+ C+ +C K F + L H +H+ +P
Sbjct: 3 SGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 49.0 bits (118), Expect = 7e-08
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+PF C C ++F + H+R HTGEKP
Sbjct: 7 GSGEKPFKCKE--CGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-07
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F H+ HLRIH+G +P
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 9e-16
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKP+ C E C K F + +H R+H+GEKP
Sbjct: 3 SGSSGSGEKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 5e-13
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +P+KC E C K F+ +H R HTGEKP
Sbjct: 3 SGSSGSGEKPFKC--EECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 1e-10
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ +GEKP++C E C K F + L H R HT E
Sbjct: 3 SGSSGSGEKPFKC-EE-CGKRFTQNSQLHSHQRVHTGE 38
Score = 52.9 bits (128), Expect = 3e-09
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ SGEKP+ C+ +C KRFT+ S L+ H VH+ +P
Sbjct: 2 SSGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 50.2 bits (121), Expect = 2e-08
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+PF C C + FT ++ H R HTGEKP
Sbjct: 7 GSGEKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ + H R+H+G +P
Sbjct: 15 CEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.4 bits (176), Expect = 9e-16
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGE+ Y C E C K+F + H RIH GEKP
Sbjct: 3 SGSSGTGERHYECSE--CGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 64.1 bits (157), Expect = 3e-13
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G R Y+C C KAF + + H R H GEKP +
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 56.4 bits (137), Expect = 2e-10
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGE+ Y C+ C K+F L H R H E
Sbjct: 3 SGSSGTGERHYECSE--CGKAFIQKSTLSMHQRIHRGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GE+ Y C +C K F + S+L H +H +P
Sbjct: 3 SGSSGTGERHYECS--ECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 49.4 bits (119), Expect = 4e-08
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T ER + C C ++F + +H R H GEKP
Sbjct: 7 GTGERHYECS--ECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F + +H RIH G +P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 1e-15
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K+F + ++ H HSGEKP
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 64.1 bits (157), Expect = 3e-13
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC C KAF + S H TH+GEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 58.3 bits (142), Expect = 4e-11
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY+C C K+F+ L H TH+ E
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFRARSSLAIHQATHSGE 38
Score = 51.4 bits (124), Expect = 1e-08
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +C K F SSL H HS +P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 49.1 bits (118), Expect = 6e-08
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++F + +H TH+GEKP
Sbjct: 7 GTGEKPYKCNE--CGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F + + +H HSG +P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 1e-15
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ G+K + C E C K+F +++ H RIH+GEKP
Sbjct: 3 SGSSGAGKKLFKCNE--CKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 64.5 bits (158), Expect = 2e-13
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G + +KC C+K F+ S H R HTGEKP
Sbjct: 3 SGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 4e-10
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + G+K ++C C K+F S L H R HT E
Sbjct: 2 SSGSSGAGKKLFKCNE--CKKTFTQSSSLTVHQRIHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+G+K + C +C+K FT+ SSL H +H+ +P
Sbjct: 3 SGSSGAGKKLFKCN--ECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 3e-08
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
++ F C C ++FT S+ VH R HTGEKP
Sbjct: 7 GAGKKLFKCNE--CKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-07
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C ECKKTF+ + + VH RIH+G +P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 71.0 bits (175), Expect = 1e-15
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEK Y C E C K F+ + H +IH+GEKP
Sbjct: 3 SGSSGTGEKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 64.5 bits (158), Expect = 2e-13
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G + YKC C K FS H + HTGEKP +
Sbjct: 3 SGSSGTGEKRYKC--NECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 54.1 bits (131), Expect = 1e-09
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEK Y+C +E C K F + L +H + HT E
Sbjct: 3 SGSSGTGEKRYKC-NE-CGKVFSRNSQLSQHQKIHTGE 38
Score = 49.4 bits (119), Expect = 5e-08
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEK Y C +C K F+ S L +H +H+ +P
Sbjct: 3 SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FS + H +IH+G +P
Sbjct: 15 CNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 4e-07
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+ + C C + F+ ++ H + HTGEKP
Sbjct: 7 GTGEKRYKCNE--CGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 1e-15
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKPY C E C K F ++ NH RIH+GEKP
Sbjct: 3 SGSSGSGEKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 5e-13
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
SG +PYKC C K F+ H R HTGEKP +
Sbjct: 3 SGSSGSGEKPYKC--NECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 54.4 bits (132), Expect = 7e-10
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + +GEKPY+C +E C K F + L H R HT E
Sbjct: 2 SSGSSGSGEKPYKC-NE-CGKVFTQNSHLTNHWRIHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ SGEKPY C +C K FT+ S L H +H+ +P
Sbjct: 2 SSGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGE 826
+ E+P+ C C + FT ++ H R HTGEKP
Sbjct: 7 GSGEKPYKCNE--CGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 47.1 bits (113), Expect = 3e-07
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ H+ H RIH+G +P
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 1e-15
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C C K+F +++ H +HSGE+P
Sbjct: 3 SGSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 61.4 bits (150), Expect = 2e-12
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC V C KAF H H+GE+P
Sbjct: 3 SGSSGTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 54.4 bits (132), Expect = 7e-10
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY+C C K+F+ S L +H H+ E
Sbjct: 3 SGSSGTGEKPYKC-QV-CGKAFRVSSHLVQHHSVHSGE 38
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY CQ C K F S L +H VHS RP
Sbjct: 3 SGSSGTGEKPYKCQ--VCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C V C ++F S+ H H+GE+P
Sbjct: 7 GTGEKPYKCQV--CGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.4 bits (111), Expect = 5e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C K F + H+ H +HSG RP
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.0 bits (175), Expect = 1e-15
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TG K + C E C K+F + H +IH+GEKP
Sbjct: 3 SGSSGTGGKHFECTE--CGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 7e-13
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G + ++C C KAF+ + + H + HTGEKP +
Sbjct: 3 SGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 55.2 bits (134), Expect = 3e-10
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TG K + C C K+F L H + HT E
Sbjct: 2 SSGSSGTGGKHFECTE--CGKAFTRKSTLSMHQKIHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +G K + C +C K FT S+L H +H+ +P
Sbjct: 2 SSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 49.4 bits (119), Expect = 5e-08
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T + F C C ++FT + +H + HTGEKP
Sbjct: 7 GTGGKHFECTE--CGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ + +H +IH+G +P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 70.6 bits (174), Expect = 1e-15
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TG++PY C E C K+F + ++ H R H+GEKP
Sbjct: 3 SGSSGTGQRPYECIE--CGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 65.3 bits (160), Expect = 1e-13
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G RPY+C C KAF T+ S H R+HTGEKP
Sbjct: 3 SGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 59.1 bits (144), Expect = 1e-11
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TG++PY C C K+FKT L H R+HT E
Sbjct: 3 SGSSGTGQRPYECIE--CGKAFKTKSSLICHRRSHTGE 38
Score = 53.3 bits (129), Expect = 2e-09
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGE 826
T +RP+ C C ++F T + H R+HTGEKP
Sbjct: 7 GTGQRPYECI--ECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 51.0 bits (123), Expect = 1e-08
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+G++PY C +C K F SSL H H+ +P
Sbjct: 3 SGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F + + H R H+G +P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 1e-15
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K F + H RIH+GEKP
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 61.8 bits (151), Expect = 2e-12
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC C K F H R HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 55.6 bits (135), Expect = 3e-10
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY+C +E C K F+ + L +H R HT E
Sbjct: 3 SGSSGTGEKPYKC-NE-CGKVFRHNSYLSRHQRIHTGE 38
Score = 49.8 bits (120), Expect = 3e-08
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY C +C K F S L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 48.7 bits (117), Expect = 7e-08
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGE 826
T E+P+ C C + F ++ H R HTGEKP
Sbjct: 7 GTGEKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 46.7 bits (112), Expect = 4e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F ++ H RIH+G +P
Sbjct: 15 CNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 1e-15
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP+ C E C KSF+ + H RIH+GE P
Sbjct: 3 SGSSGTGEKPHECRE--CGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 65.3 bits (160), Expect = 1e-13
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +P++C C K+FS H R HTGE P +
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 55.6 bits (135), Expect = 3e-10
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKP+ C C KSF + L H R HT E
Sbjct: 3 SGSSGTGEKPHECRE--CGKSFSFNSQLIVHQRIHTGE 38
Score = 51.0 bits (123), Expect = 1e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKP+ C R+C K F+ S L H +H+ P
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 49.1 bits (118), Expect = 6e-08
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P C C +SF+ ++ VH R HTGE P
Sbjct: 7 GTGEKPHECRE--CGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 46.8 bits (112), Expect = 4e-07
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K+FS + VH RIH+G P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 72.3 bits (177), Expect = 1e-15
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 1132 TSSENNVCPECKKTFSSAHHMKVHL-RIHSGIRP---YKCPVEYC---EKAFSTQYSRKA 1184
+ + C +TFS+ H + H+ H G + C E C K+F +Y
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 1185 HIRTHTGEKPYRCA 1198
HIR HTGEK +
Sbjct: 81 HIRVHTGEKSGPSS 94
Score = 71.2 bits (174), Expect = 4e-15
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHI-RTHTGEKP---YVCGEAGCD---KSFASATN 838
++ P CDR+F+T + H+ H G +VC C KSF +
Sbjct: 20 DEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 839 YKNHMRIHSGEKPYVC 854
NH+R+H+GEK
Sbjct: 78 LVNHIRVHTGEKSGPS 93
Score = 59.6 bits (144), Expect = 4e-11
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 815 THTGEKPYVCGEAGCDKSFASATNYKNHM-RIHSGEKP---YVCQVRDCQ---KRFTEYS 867
+ CD++F++ H+ H G +VC +C K F
Sbjct: 19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 868 SLYKHTLVHSDIRPFIC 884
L H VH+ +
Sbjct: 77 KLVNHIRVHTGEKSGPS 93
Score = 57.3 bits (138), Expect = 3e-10
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 1158 IHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTGEKP---YRCAHEFCS---KSFKTSG 1210
I + C++ FST + H+ H G + C E C KSFK
Sbjct: 19 IDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 1211 DLQKHVRTHTDE 1222
L H+R HT E
Sbjct: 77 KLVNHIRVHTGE 88
Score = 29.9 bits (67), Expect = 1.2
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 875 VHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKP 913
+ C R++ + L H H +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 1e-15
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ + EKPY C + C K + N H R+H GEK
Sbjct: 3 SGSSGSVEKPYKCED--CGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 64.8 bits (159), Expect = 2e-13
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
S +PYKC E C K ++ + + H R H GEK
Sbjct: 3 SGSSGSVEKPYKC--EDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + + EKPY+C C K + +L H R H E
Sbjct: 2 SSGSSGSVEKPYKCED--CGKGYNRRLNLDMHQRVHMGE 38
Score = 53.7 bits (130), Expect = 2e-09
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ S EKPY C+ DC K + +L H VH +
Sbjct: 2 SSGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 49.0 bits (118), Expect = 6e-08
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+P+ C C + + +H R H GEK
Sbjct: 7 GSVEKPYKCED--CGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 45.2 bits (108), Expect = 1e-06
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C K ++ ++ +H R+H G +
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 1e-15
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TG KPY+C E C K+F+ ++ H IH+GEKP
Sbjct: 3 SGSSGTGVKPYMCNE--CGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 65.2 bits (160), Expect = 1e-13
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G++PY C C KAFS S H HTGEKP +
Sbjct: 3 SGSSGTGVKPYMC--NECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 55.6 bits (135), Expect = 3e-10
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TG KPY C C K+F L H HT E
Sbjct: 2 SSGSSGTGVKPYMCNE--CGKAFSVYSSLTTHQVIHTGE 38
Score = 51.8 bits (125), Expect = 6e-09
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +G KPY+C +C K F+ YSSL H ++H+ +P
Sbjct: 2 SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 3e-07
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T +P+ C C ++F+ + H HTGEKP
Sbjct: 7 GTGVKPYMCNE--CGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 2e-06
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FS + H IH+G +P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 1e-15
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K F ++ NH RIH+G KP
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 62.9 bits (154), Expect = 9e-13
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC C K F+ H R HTG KP
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 55.2 bits (134), Expect = 4e-10
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C C K F + L H R HT
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLANHQRIHTGV 38
Score = 49.1 bits (118), Expect = 6e-08
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +C K FT+ S L H +H+ ++P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 48.7 bits (117), Expect = 8e-08
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C + FT ++ H R HTG KP
Sbjct: 7 GTGEKPYKCNE--CGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 46.4 bits (111), Expect = 5e-07
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ H+ H RIH+G++P
Sbjct: 15 CNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 1e-15
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C + C K+F+ ++ H IH+G+KP
Sbjct: 3 SGSSGTGEKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 65.6 bits (161), Expect = 9e-14
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PY+C C KAFS + S H HTG+KP +
Sbjct: 3 SGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 55.6 bits (135), Expect = 3e-10
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ TGEKPY C C K+F L H HT +
Sbjct: 3 SGSSGTGEKPYECNQ--CGKAFSVRSSLTTHQAIHTGK 38
Score = 51.8 bits (125), Expect = 6e-09
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C C K F+ SSL H +H+ +P
Sbjct: 3 SGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C ++F+ + H HTG+KP
Sbjct: 7 GTGEKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 45.6 bits (109), Expect = 1e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C K FS + H IH+G +P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 70.7 bits (174), Expect = 2e-15
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKP C E C K+F + H R H +K
Sbjct: 3 SGSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 58.0 bits (141), Expect = 5e-11
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +P KC C KAF + H RTH +K
Sbjct: 3 SGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 57.2 bits (139), Expect = 9e-11
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKP +C C K+F L H RTH D+
Sbjct: 2 SSGSSGTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVDD 38
Score = 51.0 bits (123), Expect = 1e-08
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P C C ++F + +H RTH +K
Sbjct: 7 GTGEKPCKCTE--CGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKP C +C K F S L H H D +
Sbjct: 3 SGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 44.5 bits (106), Expect = 3e-06
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F + +H R H +
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 2e-15
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K F ++ H IH+GEKP
Sbjct: 3 SGSSGTGEKPYKCHE--CGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 61.3 bits (150), Expect = 3e-12
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G +PYKC C K F H HTGEKP
Sbjct: 3 SGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 54.4 bits (132), Expect = 7e-10
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C HE C K F+ + L +H HT E
Sbjct: 2 SSGSSGTGEKPYKC-HE-CGKVFRRNSHLARHQLIHTGE 38
Score = 48.6 bits (117), Expect = 7e-08
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +C K F S L +H L+H+ +P
Sbjct: 3 SGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 3e-07
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C + F ++ H HTGEKP
Sbjct: 7 GTGEKPYKCHE--CGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 7e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F H+ H IH+G +P
Sbjct: 15 CHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 2e-15
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K F ++ H IH+GEKP
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 64.4 bits (158), Expect = 3e-13
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PYKC C K F+ H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 55.6 bits (135), Expect = 3e-10
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C +E C K F + L +H HT E
Sbjct: 2 SSGSSGTGEKPYKC-NE-CGKVFTQNSHLVRHRGIHTGE 38
Score = 50.6 bits (122), Expect = 2e-08
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ +GEKPY C +C K FT+ S L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C + FT ++ H HTGEKP
Sbjct: 7 GTGEKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 8e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ H+ H IH+G +P
Sbjct: 15 CNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.3 bits (173), Expect = 2e-15
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKP+ C E C K F ++ +H R+H+GEKP
Sbjct: 3 SGSSGSGEKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 62.6 bits (153), Expect = 1e-12
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +P++C E C K F+ +H R HTGEKP
Sbjct: 3 SGSSGSGEKPFQC--EECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 56.8 bits (138), Expect = 1e-10
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ +GEKP++C C K F + L H R HT E
Sbjct: 3 SGSSGSGEKPFQCEE--CGKRFTQNSHLHSHQRVHTGE 38
Score = 52.2 bits (126), Expect = 5e-09
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGEKP+ C+ +C KRFT+ S L+ H VH+ +P
Sbjct: 3 SGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 49.9 bits (120), Expect = 3e-08
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+PF C C + FT ++ H R HTGEKP
Sbjct: 7 GSGEKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.2 bits (113), Expect = 2e-07
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ H+ H R+H+G +P
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 2e-15
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K F ++ H IH+GEKP
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 64.1 bits (157), Expect = 3e-13
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PYKC C K F+ H HTGEKP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 56.4 bits (137), Expect = 2e-10
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C C K F + L +H HT E
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLARHRGIHTGE 38
Score = 49.0 bits (118), Expect = 6e-08
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +C K FT+ S L +H +H+ +P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C + FT ++ H HTGEKP
Sbjct: 7 GTGEKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 8e-07
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ H+ H IH+G +P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 3e-15
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ GEKPY C E C KSF+ + H H+ EKP
Sbjct: 3 SGSSGEGEKPYQCSE--CGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 61.4 bits (150), Expect = 3e-12
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
G +PY+C C K+FS Y H THT EKP
Sbjct: 3 SGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 55.2 bits (134), Expect = 4e-10
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + GEKPY+C+ C KSF S L +H THT E
Sbjct: 2 SSGSSGEGEKPYQCSE--CGKSFSGSYRLTQHWITHTRE 38
Score = 49.5 bits (119), Expect = 4e-08
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
E+P+ C C +SF+ S H THT EKP
Sbjct: 7 GEGEKPYQCSE--CGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
GEKPY C +C K F+ L +H + H+ +P
Sbjct: 3 SGSSGEGEKPYQCS--ECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 47.2 bits (113), Expect = 2e-07
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K+FS ++ + H H+ +P
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 69.9 bits (172), Expect = 3e-15
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ GE+ + C + C K F A+N+ H RIH+GEKP
Sbjct: 3 SGSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 58.7 bits (143), Expect = 3e-11
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
G R ++C C K F + H R HTGEKP
Sbjct: 3 SGSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 55.2 bits (134), Expect = 4e-10
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ GE+ +RC+ C K F + + +H R HT E
Sbjct: 3 SGSSGHGERGHRCSD--CGKFFLQASNFIQHRRIHTGE 38
Score = 49.5 bits (119), Expect = 5e-08
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ GE+ + C DC K F + S+ +H +H+ +P
Sbjct: 2 SSGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 1e-07
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
ER C C + F ++ H R HTGEKP
Sbjct: 7 GHGERGHRCSD--CGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 1e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C +C K F A + H RIH+G +P
Sbjct: 15 CSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 3e-15
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGEKPY C E C K F ++ H R+H+G KP
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 64.5 bits (158), Expect = 2e-13
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
+G +PYKC C K F+ H R HTG KP +
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 55.6 bits (135), Expect = 3e-10
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGEKPY+C +E C K F + L +H R HT
Sbjct: 2 SSGSSGTGEKPYKC-NE-CGKVFTQNSHLARHRRVHTGG 38
Score = 49.8 bits (120), Expect = 4e-08
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GEKPY C +C K FT+ S L +H VH+ +P
Sbjct: 3 SGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 47.9 bits (115), Expect = 1e-07
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
T E+P+ C C + FT ++ H R HTG KP
Sbjct: 7 GTGEKPYKCNE--CGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 46.4 bits (111), Expect = 5e-07
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ H+ H R+H+G +P
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 4e-15
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +G+KPY C E C K+F + H R+H+GE+
Sbjct: 3 SGSSGSGKKPYECKE--CRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 58.7 bits (143), Expect = 2e-11
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +PY+C + C K F H R HTGE+
Sbjct: 3 SGSSGSGKKPYEC--KECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 56.4 bits (137), Expect = 2e-10
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + +G+KPY C C K+F G L +H R HT E
Sbjct: 2 SSGSSGSGKKPYECKE--CRKTFIQIGHLNQHKRVHTGE 38
Score = 50.2 bits (121), Expect = 2e-08
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGE 826
+ ++P+ C C ++F H R HTGE+
Sbjct: 7 GSGKKPYECKE--CRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 47.5 bits (114), Expect = 2e-07
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC+KTF H+ H R+H+G R
Sbjct: 15 CKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SG+KPY C+ +C+K F + L +H VH+ R
Sbjct: 3 SGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 4e-15
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GE+P+ C E C K F ++ H+R+HS EK
Sbjct: 3 SGSSGSGERPFKCNE--CGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 59.9 bits (146), Expect = 9e-12
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG RP+KC C K F + H+R H+ EK
Sbjct: 3 SGSSGSGERPFKC--NECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 54.1 bits (131), Expect = 1e-09
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ +GE+P++C +E C K F L H+R H+ E
Sbjct: 3 SGSSGSGERPFKC-NE-CGKGFGRRSHLAGHLRLHSRE 38
Score = 49.8 bits (120), Expect = 4e-08
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ ERPF C C + F + H+R H+ EK
Sbjct: 7 GSGERPFKCNE--CGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F H+ HLR+HS +
Sbjct: 15 CNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 47.5 bits (114), Expect = 2e-07
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGE+P+ C +C K F S L H +HS +
Sbjct: 3 SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 68.7 bits (169), Expect = 6e-15
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEKPY C E C K+F + H R H+G
Sbjct: 3 SGSSGSGEKPYECNE--CGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 61.8 bits (151), Expect = 2e-12
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +PY+C C KAF + H RTH G
Sbjct: 3 SGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 58.3 bits (142), Expect = 3e-11
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + +GEKPY C C K+F L H RTH
Sbjct: 2 SSGSSGSGEKPYECNE--CGKAFIWKSLLIVHERTHAGV 38
Score = 52.5 bits (127), Expect = 4e-09
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ SGEKPY C +C K F S L H H+ +
Sbjct: 2 SSGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 50.2 bits (121), Expect = 3e-08
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
+ E+P+ C C ++F ++ VH RTH G G
Sbjct: 7 GSGEKPYECN--ECGKAFIWKSLLIVHERTHAGVSGPSSG 44
Score = 42.5 bits (101), Expect = 1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F + VH R H+G+
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 68.3 bits (168), Expect = 1e-14
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ + K + C E C + F ++ H RIH+GEKP
Sbjct: 3 SGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 54.5 bits (132), Expect = 7e-10
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + K ++C C + F L +H R HT E
Sbjct: 3 SGSSGSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTGE 38
Score = 54.5 bits (132), Expect = 8e-10
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
S + ++C C + F+ + H R HTGEKP
Sbjct: 3 SGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 47.2 bits (113), Expect = 3e-07
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+ S K + C +C + FT S L +H +H+ +P
Sbjct: 2 SSGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 46.8 bits (112), Expect = 3e-07
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+S + C C R FT + H R HTGEKP
Sbjct: 7 GSSTKSHQCHE--CGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 2e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC + F+ H+ H RIH+G +P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 68.0 bits (167), Expect = 1e-14
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPY 852
+ GEKPY C + C K+F+ + H+R+H+G P
Sbjct: 2 SSGSSGGEKPYRCDQ--CGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 62.2 bits (152), Expect = 1e-12
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
G +PY+C + C KAFS + S HIR HTG P
Sbjct: 2 SSGSSGGEKPYRC--DQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 61.0 bits (149), Expect = 4e-12
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ GEKPYRC C K+F G L H+R HT
Sbjct: 1 GSSGSSGGEKPYRCDQ--CGKAFSQKGSLIVHIRVHTGS 37
Score = 50.6 bits (122), Expect = 2e-08
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 882
GEKPY C C K F++ SL H VH+ P
Sbjct: 2 SSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 48.7 bits (117), Expect = 8e-08
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPY 822
E+P+ C C ++F+ VHIR HTG P
Sbjct: 6 SGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 41.4 bits (98), Expect = 3e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPY 1165
C +C K FS + VH+R+H+G P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 67.6 bits (166), Expect = 2e-14
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR-IHSGEKPYVC 854
+ TG+KPY C E C K+F T+ H R H+GEKP
Sbjct: 3 SGSSGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 58.0 bits (141), Expect = 5e-11
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIR-THTGEKPYRC 1197
+G +PY+C C KAF S H R HTGEKP
Sbjct: 3 SGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 53.3 bits (129), Expect = 2e-09
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVR-THTDE 1222
+ + TG+KPY C C K+F + L +H R HT E
Sbjct: 2 SSGSSGTGKKPYECIE--CGKAFIQNTSLIRHWRYYHTGE 39
Score = 49.9 bits (120), Expect = 4e-08
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHT-LVHSDIRPFIC 884
+ +G+KPY C +C K F + +SL +H H+ +P
Sbjct: 2 SSGSSGTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 44.1 bits (105), Expect = 4e-06
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIR-THTGEKPYVC 824
T ++P+ C C ++F + H R HTGEKP
Sbjct: 7 GTGKKPYECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 41.0 bits (97), Expect = 4e-05
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLR-IHSGIRPYKCP 1168
C EC K F + H R H+G +P
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 67.5 bits (166), Expect = 2e-14
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+GE PY C E C K+F +H R H+GE
Sbjct: 3 SGSSGENPYECSE--CGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 58.3 bits (142), Expect = 3e-11
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 1157 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG PY+C C KAF+ + +H RTH GE
Sbjct: 3 SGSSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 52.5 bits (127), Expect = 3e-09
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+GE PY C+ C K+F L H RTH E
Sbjct: 3 SGSSGENPYECSE--CGKAFNRKDQLISHQRTHAGE 36
Score = 51.7 bits (125), Expect = 6e-09
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
+ E P+ C C ++F + H RTH GE G
Sbjct: 5 SSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSSG 42
Score = 46.0 bits (110), Expect = 6e-07
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 844 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGE PY C +C K F L H H+
Sbjct: 3 SGSSGENPYECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 46.0 bits (110), Expect = 7e-07
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ + H R H+G
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 66.1 bits (162), Expect = 5e-14
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ +GEK + C E C K+F + + H R+H GEK
Sbjct: 3 SGSSGSGEKSHTCDE--CGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 55.7 bits (135), Expect = 2e-10
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG + + C + C K F + + H R H GEK
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 54.5 bits (132), Expect = 6e-10
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ +GEK + C E C K+F L+ H R H E
Sbjct: 3 SGSSGSGEKSHTC-DE-CGKNFCYISALRIHQRVHMGE 38
Score = 47.6 bits (114), Expect = 2e-07
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
SGEK + C +C K F S+L H VH
Sbjct: 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHM 36
Score = 46.0 bits (110), Expect = 8e-07
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+ C C ++F + ++H R H GEK
Sbjct: 7 GSGEKSHTCDE--CGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 39.1 bits (92), Expect = 2e-04
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F +++H R+H G +
Sbjct: 15 CDECGKNFCYISALRIHQRVHMGEKCSGP 43
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 66.0 bits (162), Expect = 5e-14
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+GEKP+ C C+K+F+S + H + H+ EKP
Sbjct: 3 SGSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 60.2 bits (147), Expect = 7e-12
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 1157 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +P+ C CEKAFS++ H +TH EKP
Sbjct: 3 SGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 53.7 bits (130), Expect = 1e-09
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVC 824
+ E+PF C C+++F++ + VH +TH EKP
Sbjct: 5 SSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 51.0 bits (123), Expect = 1e-08
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+GEKP+ C+ C K+F + L H +TH +E
Sbjct: 3 SGSSGEKPFGCSC--CEKAFSSKSYLLVHQQTHAEE 36
Score = 46.8 bits (112), Expect = 3e-07
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C C+K FSS ++ VH + H+ +P
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 44.4 bits (106), Expect = 2e-06
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 844 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
SGEKP+ C C+K F+ S L H H++ +P
Sbjct: 3 SGSSGEKPFGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 65.8 bits (161), Expect = 6e-14
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPY 852
+ GE PY+CG+ C KSF + H R S P
Sbjct: 2 SSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 54.2 bits (131), Expect = 8e-10
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ GE PY C C KSF G L H R+ +
Sbjct: 1 GSSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQS 37
Score = 51.1 bits (123), Expect = 1e-08
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
G PY C C K+F+ + S H R+ + P
Sbjct: 2 SSGSSGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 48.0 bits (115), Expect = 1e-07
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPY 822
E P+ C C +SFT VH R+ + P
Sbjct: 6 SGGETPYLCGQ--CGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 47.7 bits (114), Expect = 2e-07
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 882
GE PY+C C K FT+ SL H S P
Sbjct: 2 SSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 40.7 bits (96), Expect = 5e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYK 1166
+C +C K+F+ + VH R S P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 65.6 bits (161), Expect = 8e-14
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ TGE PY C E C K F+ +H + HSG+
Sbjct: 3 SGSSGTGENPYECCE--CGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 56.4 bits (137), Expect = 1e-10
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
+G PY+C C K FS + +H +TH+G+
Sbjct: 3 SGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 54.8 bits (133), Expect = 5e-10
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + TGE PY C C K F L H +TH+ +
Sbjct: 2 SSGSSGTGENPYECCE--CGKVFSRKDQLVSHQKTHSGQ 38
Score = 48.3 bits (116), Expect = 1e-07
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
T E P+ C C + F+ + H +TH+G+ G
Sbjct: 7 GTGENPYECCE--CGKVFSRKDQLVSHQKTHSGQSGPSSG 44
Score = 46.0 bits (110), Expect = 8e-07
Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFIC 884
+GE PY C +C K F+ L H HS
Sbjct: 3 SGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.5 bits (101), Expect = 1e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K FS + H + HSG
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A
4znf_A
Length = 57
Score = 64.0 bits (155), Expect = 5e-13
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
+C EC +K H+R H+ +RPY C YC +F T+ + H+++ K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 63.6 bits (154), Expect = 6e-13
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
Y C E C K HIRTHT +PY C + C+ SFKT G+L KH+++
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHS 55
Score = 59.7 bits (144), Expect = 1e-11
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 799 CDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
C ++ K HIRTHT +PY C C+ SF + N HM+ + K
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHSK 56
Score = 55.9 bits (134), Expect = 4e-10
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 822 YVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
Y+C E C + K H+R H+ +PY C C F +L KH +
Sbjct: 2 YICEE--CGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKA 53
Score = 48.2 bits (114), Expect = 2e-07
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 852 YVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESK 909
Y+C+ +C R + S L KH H+D+RP+ C C S++ L H K+ K
Sbjct: 2 YICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 40.5 bits (94), Expect = 8e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
HT RP+ C C+ SF T H+++ K
Sbjct: 24 HTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHSK 56
Score = 30.1 bits (67), Expect = 0.51
Identities = 5/34 (14%), Positives = 14/34 (41%)
Query: 1128 VKKSTSSENNVCPECKKTFSSAHHMKVHLRIHSG 1161
++ T C C +F + ++ H++ +
Sbjct: 21 IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.4 bits (150), Expect = 2e-12
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ T K Y C E C K+F + H +IH+ +
Sbjct: 3 SGSSGTDSKSYNCNE--CGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 55.3 bits (134), Expect = 4e-10
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ T K Y C C K+F L +H + HT +
Sbjct: 3 SGSSGTDSKSYNCNE--CGKAFTRIFHLTRHQKIHTRK 38
Score = 50.7 bits (122), Expect = 1e-08
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
+ + Y C C KAF+ + H + HT +
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 39.1 bits (92), Expect = 2e-04
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
T + + C C ++FT H + HT + G
Sbjct: 7 GTDSKSYNCN--ECGKAFTRIFHLTRHQKIHTRKSGPSSG 44
Score = 37.9 bits (89), Expect = 4e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C EC K F+ H+ H +IH+
Sbjct: 15 CNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 30.2 bits (69), Expect = 0.26
Identities = 9/67 (13%), Positives = 18/67 (26%), Gaps = 30/67 (44%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHK 901
+ K Y C C +++ ++ L H+
Sbjct: 3 SGSSGTDSKSYNCN------------------------------ECGKAFTRIFHLTRHQ 32
Query: 902 KTNHRES 908
K + R+S
Sbjct: 33 KIHTRKS 39
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 61.0 bits (149), Expect = 3e-12
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPY 852
+G++ Y C E C KSF + H RIH+G P
Sbjct: 3 SGSSGQRVYECQE--CGKSFRQKGSLTLHERIHTGSGPS 39
Score = 49.5 bits (119), Expect = 4e-08
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+G++ Y C C KSF+ G L H R HT
Sbjct: 3 SGSSGQRVYECQE--CGKSFRQKGSLTLHERIHTGS 36
Score = 48.7 bits (117), Expect = 6e-08
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1157 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
SG R Y+C + C K+F + S H R HTG P
Sbjct: 3 SGSSGQRVYEC--QECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 42.2 bits (100), Expect = 1e-05
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPY 822
+ +R + C C +SF +H R HTG P
Sbjct: 5 SSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 39.9 bits (94), Expect = 8e-05
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPY 1165
C EC K+F + +H RIH+G P
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 844 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPF 882
SG++ Y CQ +C K F + SL H +H+ P
Sbjct: 3 SGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSGPS 39
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 60.4 bits (146), Expect = 1e-11
Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 1148 SAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFK 1207
S+ +IH G R KC C F T + K C E C K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKC--SKCGIIFI-------RRSTLSRRKTPMC--EKCRKDSC 50
Query: 1208 TSGDLQKHVRTHTDE 1222
L K + +
Sbjct: 51 QEAALNKDEGNESGK 65
Score = 59.7 bits (144), Expect = 2e-11
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 834 ASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQ 893
S+ + +IH G++ C C F S+L + + +C++C + Q
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCS--KCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQ 51
Query: 894 LCTLNVHKKTNHRESKNKKPSN 915
LN + K PS+
Sbjct: 52 EAALNKDEGN-ESGKKTSGPSS 72
Score = 52.7 bits (126), Expect = 6e-09
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 805 TSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFT 864
+S + H G++ C + C F + S K +C+ C+K
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSK--CGIIFIRRST-------LSRRKTPMCE--KCRKDSC 50
Query: 865 EYSSLYKHTLVHS 877
+ ++L K S
Sbjct: 51 QEAALNKDEGNES 63
Score = 51.2 bits (122), Expect = 3e-08
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 11/67 (16%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRI 845
H +R C C F T + K +C + C K
Sbjct: 13 HLGDRSQKCS--KCGIIFI-------RRSTLSRRKTPMCEK--CRKDSCQEAALNKDEGN 61
Query: 846 HSGEKPY 852
SG+K
Sbjct: 62 ESGKKTS 68
Score = 42.3 bits (99), Expect = 3e-05
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 9/57 (15%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPY 1195
C +C F S + C E C K + + +G+K
Sbjct: 21 CSKCGIIFI-------RRSTLSRRKTPMC--EKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 30.0 bits (67), Expect = 0.85
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 1132 TSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPY 1165
+ + +C +C+K + SG +
Sbjct: 35 SRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 67.5 bits (165), Expect = 2e-11
Identities = 38/177 (21%), Positives = 66/177 (37%), Gaps = 37/177 (20%)
Query: 354 DDHYGMEDVKKRILEFI-------AVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
DD G +I E + A+ + G + + YGPPG GKT IA+++A
Sbjct: 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG 263
Query: 407 REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGK--- 462
+F + EI G + + ++ + P ++ IDE+D I
Sbjct: 264 AFFFLI------NGPEIMS---KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE 314
Query: 463 GYSGDP----ASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLR 515
G+ S LL ++D + + V+ + N ++I LR
Sbjct: 315 KTHGEVERRIVSQLLTLMDGLKQR-------------AHVIVMAATNRPNSIDPALR 358
Score = 47.5 bits (113), Expect = 3e-05
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 354 DDHYGMEDVKKRILEFI--------AVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARAL 405
+D G+EDVK+ + E + + G T K + FYGPPG GKT +AK+IA
Sbjct: 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIANEC 535
Query: 406 NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGK-- 462
+ S+ G E+ + G V + K + P VL DE+D I K
Sbjct: 536 QANF--ISIKG----PELLTM---WFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586
Query: 463 -GYSGDPASA--------LLEM 475
G GD A L EM
Sbjct: 587 GGNIGDGGGAADRVINQILTEM 608
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 57.7 bits (140), Expect = 5e-11
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+GEKPY C E C ++F+ H ++H+ +
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 51.6 bits (124), Expect = 7e-09
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+GEKPY CA C ++F + L +H + HT +
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVK 36
Score = 46.2 bits (110), Expect = 5e-07
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 1157 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRC 1197
SG +PY C C++ FS H + HT +
Sbjct: 3 SGSSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 43.5 bits (103), Expect = 6e-06
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
+ E+P+ C C +F+ +N H + HT + G
Sbjct: 5 SSGEKPYSCAE--CKETFSDNNRLVQHQKMHTVKSGPSSG 42
Score = 41.9 bits (99), Expect = 2e-05
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 844 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
SGEKPY C +C++ F++ + L +H +H+
Sbjct: 3 SGSSGEKPYSCA--ECKETFSDNNRLVQHQKMHT 34
Score = 40.4 bits (95), Expect = 8e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
C ECK+TFS + + H ++H+
Sbjct: 13 CAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 65.3 bits (159), Expect = 7e-11
Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 50/232 (21%)
Query: 354 DDHYGMEDVKKRILEFI-----------AVSQLKGTTQGKILCFYGPPGVGKTSIAKSIA 402
G + ++ ++ + G+ + YGPPG+GKT+ A +A
Sbjct: 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98
Query: 403 RALNREYFRFSVGGMSDV-------AEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLID 455
+ L + + SDV A +K K + + ++ ++++D
Sbjct: 99 QELGYDILEQNA---SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155
Query: 456 EVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN-VIDTIPEPL 514
EVD G SG + ++ + + I N P
Sbjct: 156 EVD----GMSGGDRGGVGQLAQFCRK--------------TSTPLILICNERNLPKMRPF 197
Query: 515 RDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIK 566
I + + + E+ L+P+ I LI+
Sbjct: 198 DRVCLDIQFRR-PDANSIKSRLMTIAIR---------EKFKLDPNVIDRLIQ 239
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 55.8 bits (135), Expect = 2e-10
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 1185 HIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 1219
R TG KP++C C +SF S L H + H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 49.6 bits (119), Expect = 3e-08
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
R TG KP+ C + CD+SF+ + + H + H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 47.7 bits (114), Expect = 2e-07
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTH 1189
R +GI+P++CP C+++FS H + H
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 44.6 bits (106), Expect = 2e-06
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 842 HMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
R +G KP+ C DC + F+ L H H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
Score = 43.1 bits (102), Expect = 7e-06
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTH 816
T +PF CP CDRSF+ S+ +H + H
Sbjct: 6 STGIKPFQCPD--CDRSFSRSDHLALHRKRH 34
Score = 34.2 bits (79), Expect = 0.008
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 1139 CPECKKTFSSAHHMKVHLRIH 1159
CP+C ++FS + H+ +H + H
Sbjct: 14 CPDCDRSFSRSDHLALHRKRH 34
Score = 31.9 bits (73), Expect = 0.058
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 872 HTLVHSDIRPFICDRCPRSYRQLCTLNVHKKT 903
T + I+PF C C RS+ + L +H+K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 54.9 bits (132), Expect = 6e-10
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 1157 RIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCA 1198
+ C E C K F Y H +H+GEKPY
Sbjct: 5 SSGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 53.8 bits (129), Expect = 2e-09
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 814 RTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVC 854
+ K C C K F + H HSGEKPY
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 51.5 bits (123), Expect = 1e-08
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 1125 GGTVKKSTSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKC 1167
G + + + C C K F +H+ H HSG +PY
Sbjct: 1 GSSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 48.8 bits (116), Expect = 1e-07
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCG 825
+ + C + C + F H +H+GEKPY G
Sbjct: 6 SGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 44.9 bits (106), Expect = 2e-06
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ K C E C K F+ L +H +H+ E
Sbjct: 5 SSGRTRKQVAC--EICGKIFRDVYHLNRHKLSHSGE 38
Score = 43.4 bits (102), Expect = 6e-06
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 844 RIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRC 887
K C++ C K F + L +H L HS +P+
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.4 bits (71), Expect = 0.12
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 880 RPFICDRCPRSYRQLCTLNVHKKT 903
+ C+ C + +R + LN HK +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLS 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 60.9 bits (147), Expect = 8e-10
Identities = 52/283 (18%), Positives = 97/283 (34%), Gaps = 45/283 (15%)
Query: 340 EENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQ---------LKGTTQGKILCFYGPP 390
E + + LD + G++ VK RI E A+ L T + F G P
Sbjct: 17 YEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNP 76
Query: 391 GVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGH--RRTYVGAMPGKVIQCMKKTKTE 448
G GKT++A +A R + + Y+G K + +K+
Sbjct: 77 GTGKTTVALKMA----GLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM-- 130
Query: 449 NPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVID 508
++ IDE + + + ++ L ++ D V+ A+ ++
Sbjct: 131 GGVLFIDEAYYLYRPDNERDYG--------QEAIEILLQVMENNRDDLVVILAGYADRME 182
Query: 509 TIPEP---LRDRM-EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVL 564
+ R R+ I+ Y EE IA L Q + ++PE T A++
Sbjct: 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQ---MTPEAET----ALRAY 235
Query: 565 IKNYCRESG------VRNLQKHIEKVTRKVALTIVKKESDKVT 601
I + +RN +++ + A + S +
Sbjct: 236 IGLRRNQPHFANARSIRNA---LDRARLRQANRLFTASSGPLD 275
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 4e-09
Identities = 85/593 (14%), Positives = 159/593 (26%), Gaps = 239/593 (40%)
Query: 312 FLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIA 371
L +S F ++ + LP + E DD+ ++ + L +++
Sbjct: 20 LLVPTASFFIASQLQEQFNKILP---EPTEGF-------AADDEPTTPAELVGKFLGYVS 69
Query: 372 VSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYV 431
S ++ + G+ + Y G +D+ H
Sbjct: 70 -SLVEPSKVGQF-----------DQVLNLCLTEFENCYLE----G-NDI-----H--ALA 105
Query: 432 GAMPGKVIQCMKKTKTENPLVLI----DEVDKIGKGYSGDPASALLEMLDPEQNANFL-- 485
+ + + KTK LI + + SAL + E NA +
Sbjct: 106 AKLLQENDTTLVKTKE-----LIKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAI 159
Query: 486 -------DHYLDVPVDLSRVL----------FICTANVIDTIPEPLRDRMEM-------I 521
D Y + +L R L I + +T+ E +R ++ +
Sbjct: 160 FGGQGNTDDYFE---EL-RDLYQTYHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGL 213
Query: 522 DV------------SGYVAEEKVAI-------AAQYLIPQAMKESGLSPEQ--------- 553
++ Y+ ++ A Y++ K G +P +
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV--TAKLLGFTPGELRSYLKGAT 271
Query: 554 -----------ITLEPS----------AIQVL-------------------IKNYCRESG 573
I S AI VL I E+
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 574 ---------VRNL-----QKHIEKVTRKVALTIVKKESDKVTVTNDNLSD-FVGKPIFSH 618
+ NL Q ++ K + +V ++ N + V
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLP------AGKQVEISLVNGAKNLV------- 378
Query: 619 DRLFEIT-PP----GVVT--RKVALTIVKKESD---------KVTVTNDNLSDFVGKPIF 662
++ PP G+ RK D K+ +N F+ P+
Sbjct: 379 -----VSGPPQSLYGLNLTLRKAK---APSGLDQSRIPFSERKLKFSN----RFL--PVA 424
Query: 663 S--HDRLFEITPPGVVM-----GLAWTAMAVK------KDGP---SAGITITTALVSLAT 706
S H L + +++ A ++ DG +I+ +V
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Query: 707 GKPIK----QNLAMT-------GEISLVGKVLPVGGIKEKTIAAKRVGVHTIL 748
P+K T G S +G + K+ T GV I+
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVL--THRNKDGT------GVRVIV 529
Score = 59.7 bits (144), Expect = 6e-09
Identities = 55/337 (16%), Positives = 94/337 (27%), Gaps = 121/337 (35%)
Query: 137 NFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMNPLYKEQLMILLQ-----QENSPVVD 191
+ + +A+ I S ++ + +L E P
Sbjct: 262 ELRSYLKGATGHSQGLVTAV---AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 192 -NPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEE 250
P L D +L EG P MLS+S L +E ++Q + +
Sbjct: 319 LPPSILED---SLENNEGV-----------P-SPMLSISNLTQE----QVQDYV-NKTNS 358
Query: 251 KVKQQHRKYI--------------------LQEQLKAIKKELGLEKDDKDAIEEKFRERI 290
+ + I L L+ K GL D+ I F ER
Sbjct: 359 HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL---DQSRI--PFSER- 412
Query: 291 KDKKV------P---P-------PVMEVLNEELAKLGFLESHSS---------------- 318
K P P P +++N++L K +
Sbjct: 413 --KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 319 -EFNVTRNYLDWLTSLP--WGIQSEENLDLTQAAKILD---DDHYGMEDVKKRILEFIAV 372
+++ +D + LP W E +A ILD G+ + R +
Sbjct: 471 LSGSISERIVDCIIRLPVKW-----ETTTQFKATHILDFGPGGASGLGVLTHRNKD---- 521
Query: 373 SQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY 409
GT GV +A ++ + +Y
Sbjct: 522 ----GT------------GVR-VIVAGTLDINPDDDY 541
Score = 51.6 bits (123), Expect = 2e-06
Identities = 74/430 (17%), Positives = 132/430 (30%), Gaps = 152/430 (35%)
Query: 755 KDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHTSERP---------FPCPVLG------- 798
+ D + +GLN+ EW E+ S P CP++G
Sbjct: 200 RTTLDAEKVFTQGLNIL---EW-------LENPSNTPDKDYLLSIPISCPLIGVIQLAHY 249
Query: 799 ---CDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASAT-------------NYKNH 842
K+ T + Y+ G G + +A + +
Sbjct: 250 VVTA----------KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 843 MRI--HSGEKPYVCQVRDCQKRFTEYS---SLYKHTLVHSDIRPFICDRCP----RSYRQ 893
+ + G VR C + + S S+ + +L +++ P P + Q
Sbjct: 300 ITVLFFIG-------VR-CYEAYPNTSLPPSILEDSLENNEGVP-----SPMLSISNLTQ 346
Query: 894 LCTLNVHKKTNHRESKNKKPSNRVSNQLISIQSSLT-SYYSFVHFSG--STLF-IETSVR 949
+ KTN K+ + I SL + V SG +L+ + ++R
Sbjct: 347 EQVQDYVNKTNSHLPAGKQ---------VEI--SLVNGAKNLV-VSGPPQSLYGLNLTLR 394
Query: 950 K---PTSVATD----PADDKKSDGSL-FL-------TGHLGDVMKESANISLTVARNFLS 994
K P+ D P ++K S FL + L S I+ + +N +S
Sbjct: 395 KAKAPS--GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA---SDLINKDLVKNNVS 449
Query: 995 TIEPDNTFLNTRHLHLHVPEGAVK--KDGP---SAGITITTALVSLATGKPIKQNLAMTG 1049
D + +P V DG +I+ +V P+K
Sbjct: 450 FNAKD----------IQIP---VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 1050 EISLV---GKVLPVGGIKEKTIALKPLIQQQEQHKSKMFIIVDLDDVDREEDMIFELEDE 1106
+ + + G P GG L L + + I+ D++ ++D
Sbjct: 497 KATHILDFG---P-GGAS----GLGVLTHRNKDGTGVRVIVAGTLDINPDDDY------- 541
Query: 1107 DLMEEEGGKQ 1116
G KQ
Sbjct: 542 ------GFKQ 545
Score = 45.0 bits (106), Expect = 2e-04
Identities = 57/304 (18%), Positives = 92/304 (30%), Gaps = 100/304 (32%)
Query: 373 SQLKGTTQGKILCFYGPPGVGKTS-IAKSI---ARALNREYFRFSVGGMSDVAEIKGHRR 428
SQ +G G L Y KTS A+ + A ++ + FS+ D+
Sbjct: 1626 SQEQG--MGMDL--Y------KTSKAAQDVWNRADNHFKDTYGFSI---LDIVINNPVNL 1672
Query: 429 T-YVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDH 487
T + G GK I EN +I E GK + E + E N + +
Sbjct: 1673 TIHFGGEKGKRI-------RENYSAMIFETIVDGKLKT--------EKIFKEINEHSTSY 1717
Query: 488 YLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAI-AAQYLIPQAMKE 546
L L T T P A+ + + +K
Sbjct: 1718 TFRSEKGL---LSA-TQF---TQP---------------------ALTLMEKAAFEDLKS 1749
Query: 547 SGLSPEQITL------EPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKK--ESD 598
GL P T E +A L + V +++ + +V +
Sbjct: 1750 KGLIPADATFAGHSLGEYAA---L----ASLADVMSIES---------LVEVVFYRGMTM 1793
Query: 599 KVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVT-------RKVALTIVKKESDKVTVTND 651
+V V D L S+ + I P V + V + K+ V + N
Sbjct: 1794 QVAVPRDELGR-------SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 652 NLSD 655
N+ +
Sbjct: 1847 NVEN 1850
Score = 43.5 bits (102), Expect = 5e-04
Identities = 44/306 (14%), Positives = 89/306 (29%), Gaps = 112/306 (36%)
Query: 336 GIQSEE-NLDL---TQAAK-ILDD-DHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGP 389
G Q + +DL ++AA+ + + D++ + IL+ + + F G
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIV-----INNPVNLTIHFGGE 1679
Query: 390 PGVGKTSIAKSIARALNREYFRFSVGGMSD--------VAEIKGHRRTYVGAMPGKVIQC 441
G + + Y + D EI H +Y ++
Sbjct: 1680 KG-----------KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-- 1726
Query: 442 MKKTKTEN--PLVLIDEVDKIGKGYSGDPASALLEMLDPE----QNANFLDH----Y--L 489
+ T+ P + + E A E L + +A F H Y L
Sbjct: 1727 ---SATQFTQPALTLMEK-------------AAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 490 DVPVDLSRVLFICTANVI---DTIPEPLRDR---MEMIDVSGYVAEEKVAIAAQYLIPQA 543
A+V+ + E + R M++ + + A + P
Sbjct: 1771 -----------ASLADVMSIESLV-EVVFYRGMTMQVAVPRDELGRSNYGMIA--INPGR 1816
Query: 544 MKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTVT 603
+ + A+Q +++ + +G +E IV
Sbjct: 1817 VA--------ASFSQEALQYVVERVGKRTG-----WLVE---------IV---------- 1844
Query: 604 NDNLSD 609
N N+ +
Sbjct: 1845 NYNVEN 1850
Score = 42.7 bits (100), Expect = 9e-04
Identities = 61/405 (15%), Positives = 110/405 (27%), Gaps = 188/405 (46%)
Query: 212 QAILEEMDIPKRLMLSLSLLK------KELELNKLQQKIGREVEEKVKQQHRKYILQEQL 265
Q + D + S+L L ++ +K G+ + E Y
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-GKRIRE-------NYS----- 1689
Query: 266 KAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFNVTRN 325
A+ E + D K E+ F+E +NE F
Sbjct: 1690 -AMIFETIV--DGKLKTEKIFKE--------------INEHSTSYTF--RSEKGL----- 1725
Query: 326 YLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILC 385
L T + TQ A + ++E A LK ++G I
Sbjct: 1726 -LS-AT---------QF---TQPA-LT-------------LMEKAAFEDLK--SKGLI-- 1753
Query: 386 FYGPPG-------VGKTSIAKSIARALNREYFRFS----VGG-MS--DVAEIKGHRRTYV 431
P +G EY + + MS + E+ +R
Sbjct: 1754 ---PADATFAGHSLG--------------EY---AALASLADVMSIESLVEVVFYR---- 1789
Query: 432 GAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDV 491
G +Q D++G+ G M +
Sbjct: 1790 ----GMTMQVA------------VPRDELGRSNYG--------M---------------I 1810
Query: 492 PVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIA------AQYLIPQAMK 545
++ RV + + + E + R +G++ E I QY+
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKR------TGWLVE----IVNYNVENQQYVA----- 1855
Query: 546 ESGLSPEQITLEPSAIQVLIK--NYCRESGVRN--LQK--HIEKV 584
+G + A+ + N+ + + LQK +E+V
Sbjct: 1856 -AG--------DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 39.6 bits (92), Expect = 0.008
Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 72/230 (31%)
Query: 568 YCRESGVRNLQKHIEKVTRKV----ALTIVKKESDKVTVTNDNLSDFVGKPIFSHDR--- 620
Y +++ + + L IV +T+ GK I +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK---GKRI--RENYSA 1690
Query: 621 -LFEITPPG-VVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDR--LF--EITPPG 674
+FE G + T K+ I N++ + + F ++ L + T P
Sbjct: 1691 MIFETIVDGKLKTEKIFKEI-----------NEHSTSY----TFRSEKGLLSATQFTQPA 1735
Query: 675 -VVMGLA-WTAMAVKKDG--PS----AG------ITITTALVSLATGKPIKQNLAMTGE- 719
+M A + + K G P+ AG AL SLA M+ E
Sbjct: 1736 LTLMEKAAFEDL--KSKGLIPADATFAGHSLGEY----AALASLA-D-------VMSIES 1781
Query: 720 -ISLV---GKVL----PVG--GIKEKTIAAKRVGVHTILMPEENKKDFTD 759
+ +V G + P G + A G +E + +
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Score = 33.9 bits (77), Expect = 0.47
Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 77/240 (32%)
Query: 109 TAQHSINITTDYNDTFYHVMQMAAENDDNFNDHKVSLVKDLSEVYSALM----------- 157
+ I +Y M E + + K+++E ++
Sbjct: 1677 GGEKGKRIRENY-------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 158 ---QEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLA--DLG-----AALTGA- 206
Q + + ++ L+ + ++ A LG A+L
Sbjct: 1730 QFTQPALTLM----EKA-AFE-----DLKSKG--LIPADATFAGHSLGEYAALASLADVM 1777
Query: 207 --E---------G-TEQQAILE-EMDIPKRLMLSL--SLLKKELELNKLQ---QKIGREV 248
E G T Q A+ E+ M+++ + LQ +++G+
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 249 EEKV--------KQQHRKYILQEQLKAIK------KELGLEKDDKDAIEEKFR-ERIKDK 293
V QQ Y+ L+A+ + L+K D +++ E ++
Sbjct: 1838 GWLVEIVNYNVENQQ---YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 32.3 bits (73), Expect = 1.4
Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 75/212 (35%)
Query: 935 VHFSGSTLFIETSVRKPTSVATDPADDKKSDGSLFLTGHLGDVMKESANISLTVARNFLS 994
+HF G +R+ S + DG L ++ + S +
Sbjct: 1674 IHFGGEK---GKRIRENYSAMIF---ETIVDGKLKTEKIFKEINEHSTSY---------- 1717
Query: 995 TIEPDNTFLN-TRHLHLHVP---------------EGAVKKDGPSAG------ITITTAL 1032
T + L+ T+ P +G + D AG AL
Sbjct: 1718 TFRSEKGLLSATQFTQ---PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY----AAL 1770
Query: 1033 VSLATGKPIKQNLAMTGE--ISLV---GKVLPVGGIKEKTIALKPLIQQQEQHKSKMFII 1087
SLA M+ E + +V G ++ + + E +S +I
Sbjct: 1771 ASLA-D-------VMSIESLVEVVFYRGM------------TMQVAVPRDELGRSNYGMI 1810
Query: 1088 -VDLDDVDREEDMIFELEDEDLMEEEGGKQTG 1118
++ V F E + E GK+TG
Sbjct: 1811 AINPGRV----AASFSQEALQYVVERVGKRTG 1838
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 55.3 bits (132), Expect = 4e-09
Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAH 1199
L I + CP C FS+ S K HIR E C
Sbjct: 50 LIHNPQLLDESSYLYRLLASKAISQFVCP--LCLMPFSSSVSLKQHIRYT--EHTKVC-- 103
Query: 1200 EFCSKSFKTSGDLQKHVRTH 1219
C K F ++ HV
Sbjct: 104 PVCKKEFTSTDSALDHVCKK 123
Score = 55.3 bits (132), Expect = 4e-09
Identities = 16/122 (13%), Positives = 36/122 (29%), Gaps = 6/122 (4%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGC--DKSFASATNYKNHMR 844
+ + + G T +++ H T ++ + ++Y +
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 845 IHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTN 904
+VC + C F+ SL +H +C C + + + H
Sbjct: 68 ASKAISQFVCPL--CLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKK 123
Query: 905 HR 906
H
Sbjct: 124 HN 125
Score = 51.1 bits (121), Expect = 1e-07
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHI-RTHTG 1191
VCP C FSS+ +K H+R CP C+K F++ S H+ + H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTE--HTKVCP--VCKKEFTSTDSALDHVCKKHNI 126
Score = 47.2 bits (111), Expect = 2e-06
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 748 LMPEENKKDFTDLPEYIREGLNVHFVSEWRQVYDLVFEHTSERPFPCPVLGCDRSFTTSN 807
L PE+ + + I N + E + + F CP+ C F++S
Sbjct: 35 LTPEQKRLIRAIVKTLIH---NPQLLDE-SSYLYRLLASKAISQFVCPL--CLMPFSSSV 88
Query: 808 IRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMR 844
K HIR E VC C K F S + +H+
Sbjct: 89 SLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVC 121
Score = 44.5 bits (104), Expect = 2e-05
Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 1132 TSSENNVCPE--CKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKA--FSTQYSRKAHIR 1187
+ S+ + + + H R + V+ + S +
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 1188 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQ 1224
+ C C F +S L++H+R
Sbjct: 68 ASKAISQFVCPL--CLMPFSSSVSLKQHIRYTEHTKV 102
Score = 41.5 bits (96), Expect = 3e-04
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 2/93 (2%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKR--FTEYSSLYKHTL 874
+G K Y+ G + H ++ V+ + SS L
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 875 VHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
I F+C C + +L H +
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHT 100
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 51.8 bits (125), Expect = 4e-09
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+P+ C +C K F S +LQ+H RTHT E
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 51.5 bits (124), Expect = 6e-09
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
RPF C C + FT S+ + H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 48.8 bits (117), Expect = 6e-08
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
RP+ C YC K F+ + H RTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 47.6 bits (114), Expect = 2e-07
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
+P++C + C K F + + H R H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 35.7 bits (83), Expect = 0.003
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 850 KPYVCQVRDCQKRFTEYSSLYKHTLVHSDIR 880
+P++C C KRFT L +H H+ +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.7 bits (70), Expect = 0.16
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 1138 VC--PECKKTFSSAHHMKVHLRIHSGIR 1163
+C C K F+ + ++ H R H+G +
Sbjct: 4 MCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 53.8 bits (128), Expect = 8e-09
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 818 GEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
++ Y C C+ +S +H R+ VC C RF +H
Sbjct: 13 NKEVYQCRL--CNAKLSSLLEQGSHERLC--RNAAVCPY--CSLRFFSPELKQEHE-SKC 65
Query: 878 DIRPFICDRCPRSYRQLCTLNVHKKTNHRE 907
+ + C C R+++ ++ H+ H +
Sbjct: 66 EYKKLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 53.4 bits (127), Expect = 9e-09
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 1121 GGGGGGTVKKSTSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQY 1180
G G + E C C SS H R+ CP YC F +
Sbjct: 1 GSSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCP--YCSLRFFSPE 56
Query: 1181 SRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQMS 1226
++ H + K C C ++FK+S + +H ++ M+
Sbjct: 57 LKQEH-ESKCEYKKLTCL--ECMRTFKSSFSIWRHQVEVHNQNNMA 99
Score = 38.0 bits (87), Expect = 0.002
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 3/69 (4%)
Query: 1135 ENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
VCP C F S + H + C C + F + +S H +
Sbjct: 41 NAAVCPYCSLRFFSPELKQEH-ESKCEYKKLTCLE--CMRTFKSSFSIWRHQVEVHNQNN 97
Query: 1195 YRCAHEFCS 1203
S
Sbjct: 98 MAPTSGPSS 106
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 57.7 bits (140), Expect = 9e-09
Identities = 41/222 (18%), Positives = 78/222 (35%), Gaps = 52/222 (23%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKI--LCFYGPPGVGKTSIAKSIARALNREYFR 411
D+ G ++V +R+ ++ + I L F GPPG GKT+ A ++AR L E +R
Sbjct: 17 DEVVGQDEVIQRLKGYVE--------RKNIPHLLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 412 FSVGGMSDVAEIKGHRRTYVGAMPGKVIQ-CMKKTKTENP--LVLIDEVDKIGKGYSGDP 468
+ E+ + + K+ + P ++ +DE D
Sbjct: 69 ------DNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADA--------- 113
Query: 469 ASALLEMLDPEQNA--NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGY 526
+ Q A ++ Y FI + N + I EP++ R +
Sbjct: 114 ------LTADAQAALRRTMEMYSKS------CRFILSCNYVSRIIEPIQSRCAVFRFK-P 160
Query: 527 VAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568
V +E + + + E + + ++ LI
Sbjct: 161 VPKEAMKKRLLEICEK---------EGVKITEDGLEALIYIS 193
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 55.7 bits (135), Expect = 1e-08
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 52/222 (23%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKI--LCFYGPPGVGKTSIAKSIARALNREYFR 411
D+ G ++V +R+ ++ + I L F GPPG GKT+ A ++AR L E +R
Sbjct: 17 DEVVGQDEVIQRLKGYV--------ERKNIPHLLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 412 FSVGGMSDVAEIKGHRRTYVGAMPGKVIQ-CMKKTKTENP--LVLIDEVDKIGKGYSGDP 468
+ E+ + + K+ + P ++ +DE D
Sbjct: 69 ------DNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEAD---------- 112
Query: 469 ASALLEMLDPEQNA--NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGY 526
+ Q A ++ Y R FI + N + I EP++ R +
Sbjct: 113 -----ALTADAQAALRRTMEMYSKS----CR--FILSCNYVSRIIEPIQSRCAVFRFKP- 160
Query: 527 VAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568
V +E + + + E + + ++ LI
Sbjct: 161 VPKEAMKKRLLEICEK---------EGVKITEDGLEALIYIS 193
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 50.6 bits (121), Expect = 1e-08
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 812 HIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEKP 851
+ GE P+ C + CD+ F H R H+ +
Sbjct: 3 SGSSGAGENPFKCSK--CDRVFTQRNYLVQHERTHARKSG 40
Score = 47.9 bits (114), Expect = 1e-07
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1184 AHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + GE P++C+ C + F L +H RTH +
Sbjct: 2 SSGSSGAGENPFKCSK--CDRVFTQRNYLVQHERTHARK 38
Score = 42.2 bits (99), Expect = 2e-05
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 1155 HLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
+G P+KC C++ F+ + H RTH +
Sbjct: 3 SGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKSG 40
Score = 40.6 bits (95), Expect = 6e-05
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
E PF C CDR FT N H RTH +
Sbjct: 7 GAGENPFKCS--KCDRVFTQRNYLVQHERTHARKSG 40
Score = 40.6 bits (95), Expect = 7e-05
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 841 NHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
+ +GE P+ C C + FT+ + L +H H+
Sbjct: 2 SSGSSGAGENPFKCS--KCDRVFTQRNYLVQHERTHAR 37
Score = 34.4 bits (79), Expect = 0.011
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSG 1161
C +C + F+ +++ H R H+
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHAR 37
Score = 32.1 bits (73), Expect = 0.064
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 871 KHTLVHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRES 908
+ PF C +C R + Q L H++T+ R+S
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 55.9 bits (135), Expect = 2e-08
Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 46/188 (24%)
Query: 339 SEENLDLTQAAKILDDDHYGMEDVKKRILEFIA--VSQLK--GTTQGKILCFYGPPGVGK 394
++E+ + + D R+L+ V Q K T + GPP GK
Sbjct: 23 NQEDYA-----SYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGK 77
Query: 395 TSIAKSIARALNREYFRFS----VGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP 450
T++A IA N + + + G S+ A+ + ++ + A ++
Sbjct: 78 TALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDA-------------YKSQ 124
Query: 451 L--VLIDEVDKI------GKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502
L V++D+++++ G +S ALL +L P ++L I
Sbjct: 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK------------KAPPQGRKLLIIG 172
Query: 503 TANVIDTI 510
T + D +
Sbjct: 173 TTSRKDVL 180
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 56.2 bits (136), Expect = 2e-08
Identities = 47/222 (21%), Positives = 81/222 (36%), Gaps = 52/222 (23%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKI--LCFYGPPGVGKTSIAKSIARALNREYFR 411
DD G E + KR+ ++ G + L F GPPGVGKT+ A ++AR L E +R
Sbjct: 25 DDIVGQEHIVKRLKHYVK--------TGSMPHLLFAGPPGVGKTTAALALARELFGENWR 76
Query: 412 FSVGGMSDVAEIKGHRRTYVGAMPGKVIQ-CMKKTKTENP--LVLIDEVDKIGKGYSGDP 468
+ E+ + + KV + K ++ +DE D
Sbjct: 77 ------HNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADA--------- 121
Query: 469 ASALLEMLDPEQNA--NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGY 526
+ Q A ++ + S V FI + N I EP++ R +
Sbjct: 122 ------LTQDAQQALRRTMEMF------SSNVRFILSCNYSSKIIEPIQSRCAIFRFR-P 168
Query: 527 VAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568
+ +E +A +Y+ E + L +Q ++
Sbjct: 169 LRDEDIAKRLRYIAEN---------EGLELTEEGLQAILYIA 201
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 47.7 bits (114), Expect = 2e-07
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 785 EHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
+ ++ C + GC + + ++ + H+R HTGE+
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 46.2 bits (110), Expect = 5e-07
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
+ + C ++ C K + +AH+R HTGE+
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 45.4 bits (108), Expect = 9e-07
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
+K ++C GC K + ++ + H+R H+GE+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 44.3 bits (105), Expect = 2e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+K + C + C K + + L+ H+R HT E
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE 36
Score = 37.3 bits (87), Expect = 7e-04
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 1138 VC--PECKKTFSSAHHMKVHLRIHSGIR 1163
+C C K + H++ HLR H+G R
Sbjct: 10 ICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 31.2 bits (71), Expect = 0.12
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
+K ++C ++ C K + + S L H H+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 52.9 bits (127), Expect = 2e-07
Identities = 38/189 (20%), Positives = 61/189 (32%), Gaps = 32/189 (16%)
Query: 352 LDDDHYGMEDVKKRILEFI-----AVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
LD+ G + + + +L IL +G G GK+ + + R +
Sbjct: 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMG 61
Query: 407 REYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVI-----QCMKKTKTENPLVL-IDEVDKI 460
S G + G P K+I + + + N L I+++D
Sbjct: 62 INPIMMSAGELES---------GNAGE-PAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111
Query: 461 GKGYSGDPAS--------ALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPE 512
G A L + L + + +RV I T N T+
Sbjct: 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG-MYNKQENARVPIIVTGNDFSTLYA 170
Query: 513 PL-RD-RME 519
PL RD RME
Sbjct: 171 PLIRDGRME 179
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 53.7 bits (130), Expect = 3e-07
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 17/75 (22%)
Query: 386 FYGPPGVGKTSIAKSIARALNREYFRFS-VGGMSDVAEIKGHRRTYVGAMPGKVIQCMKK 444
+GPPG GKT++A+ IAR N + R S V S V EI+ + I+ ++
Sbjct: 55 LWGPPGTGKTTLAEVIARYANADVERISAV--TSGVKEIR------------EAIERARQ 100
Query: 445 TKT--ENPLVLIDEV 457
+ ++ +DEV
Sbjct: 101 NRNAGRRTILFVDEV 115
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 45.4 bits (108), Expect = 1e-06
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
R + C C +AF+ Q K H R+HT EK
Sbjct: 1 RSFVCE--VCTRAFARQEHLKRHYRSHTNEK 29
Score = 43.1 bits (102), Expect = 5e-06
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
R F C V C R+F K H R+HT EK
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 40.0 bits (94), Expect = 8e-05
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ + C E C+++F L++H R+HT+E
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNE 28
Score = 36.5 bits (85), Expect = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
+ +VC C ++FA + K H R H+ EK
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 36.5 bits (85), Expect = 0.001
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSG 1161
VC C + F+ H+K H R H+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTN 27
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 50.4 bits (120), Expect = 3e-06
Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 7/133 (5%)
Query: 340 EENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAK 399
LD + AK G E+ ++ + + + K G+ + GPPG GKT++A
Sbjct: 23 GLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMA-GRAVLLAGPPGTGKTALAL 81
Query: 400 SIARALNREY-FRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVD 458
+IA+ L + F VG EIK + + E V EV
Sbjct: 82 AIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN-----FRRAIGLRIKETKEVYEGEVT 136
Query: 459 KIGKGYSGDPASA 471
++ + +P
Sbjct: 137 ELTPCETENPMGG 149
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; 2.60A {Bacillus subtilis}
Length = 209
Score = 48.6 bits (117), Expect = 3e-06
Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 155 ALMQEVIKTVRDIISMNP-LYKEQLMILLQQENSPVVDNPIYLADLGAALTGAEGTEQQA 213
ALM+ ++ I ++ + E + ++ P +AD+ A+ + ++Q
Sbjct: 127 ALMRTLLDHFDQYIKISKKISAETYAAVTD------IEEPGRMADIVASHLPLKLKDKQD 180
Query: 214 ILEEMDIPKRLMLSLSLLKKELELNKLQQ 242
ILE D+ RL + + E E+ ++++
Sbjct: 181 ILETADVKDRLNKVIDFINNEKEVLEIEK 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 49.0 bits (117), Expect = 5e-06
Identities = 49/271 (18%), Positives = 94/271 (34%), Gaps = 66/271 (24%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKI--LCFYGPPGVGKTSIAKSIARALNREYFR 411
D+ YG +V + +F+ +GK+ L FYGPPG GKTS ++AR + + +
Sbjct: 25 DEVYGQNEVITTVRKFVD--------EGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76
Query: 412 FSVGGMSDVAEIKGHRRTYVGAMPGKVIQ-CMKKTKTENP--LVLIDEVDKIGKGYSGDP 468
+ V E+ + + ++ + L+++DE D
Sbjct: 77 ------NMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADA--------- 121
Query: 469 ASALLEMLDPEQNA--NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSGY 526
M + QNA ++ Y F AN + L +
Sbjct: 122 ------MTNAAQNALRRVIERYTKN------TRFCVLANYAHKLTPALLSQCTRFRFQ-P 168
Query: 527 VAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY---CRESGVRNLQKHIEK 583
+ +E + ++ E++ L P+A + LI+ R + LQ
Sbjct: 169 LPQEAIERRIANVLVH---------EKLKLSPNAEKALIELSNGDMR-RVLNVLQ----- 213
Query: 584 VTRKVALTIVKKESDKVTVTNDNLSDFVGKP 614
+ D+ +++D + + G P
Sbjct: 214 -----SCKATLDNPDEDEISDDVIYECCGAP 239
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 48.5 bits (115), Expect = 1e-05
Identities = 47/282 (16%), Positives = 95/282 (33%), Gaps = 53/282 (18%)
Query: 347 QAAKILDDDH-----YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSI 401
+ L D+ ED ++I +A + I YG G GKT++ K +
Sbjct: 8 INREYLLPDYIPDELPHREDQIRKIASILA-PLYREEKPNNIFI-YGLTGTGKTAVVKFV 65
Query: 402 ARALNREY---FRF-SVGGMS---------DVAEIKGHRRTYVGAMPGKVIQCMKKTKTE 448
L++++ F+ + D+ E + + G ++ + + K +
Sbjct: 66 LSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD 125
Query: 449 N---PLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTAN 505
++++DE+D K Y+ D L + S++ FI N
Sbjct: 126 YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNK--------------SKISFIGITN 171
Query: 506 ---VIDTIPEPLRDRM--EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSA 560
+D + ++ + E I Y AEE I + ++ + L +
Sbjct: 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQ--------MAFKPGVLPDNV 223
Query: 561 IQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTV 602
I++ RE G + + R + + KV
Sbjct: 224 IKLCAALAAREHGDA---RRALDLLRVSGEIAERMKDTKVKE 262
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 47.5 bits (112), Expect = 2e-05
Identities = 39/334 (11%), Positives = 91/334 (27%), Gaps = 41/334 (12%)
Query: 360 EDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY-FRFSVGGM- 417
E +++ + G PG GKT + + + RF
Sbjct: 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82
Query: 418 ---------SDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDP 468
++A G + + + + E L + +D
Sbjct: 83 IYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDA-------- 134
Query: 469 ASALLEMLDPEQNANFLDHYLDVP-VDLSRVLFICTAN---VIDTIPEPLRDRM--EMID 522
L P+ + F+ + + R+ + + V++ + R M +I
Sbjct: 135 -----FNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIR 189
Query: 523 VSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIE 582
S Y ++ I + E S + + + + I G + + I+
Sbjct: 190 FSPYTKDQIFDILLDRA-KAGLAEGSYSEDILQM-IADITGAQTPLDTNRG--DARLAID 245
Query: 583 KVTRKVALTIVKKESDKVTVTNDNLSDFVGKPIFSHDRLFEITPPGVVTRKVALTIVKKE 642
+ + A + + + S S + L + + + +K
Sbjct: 246 -ILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKIS 304
Query: 643 SDKVTVTND------NLSDFVGKPIFSHDRLFEI 670
D + + G+ H +L+
Sbjct: 305 HTPYITFGDAEESYKIVCEEYGERPRVHSQLWSY 338
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 46.1 bits (110), Expect = 3e-05
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 20/122 (16%)
Query: 350 KILDDDHYGMEDVKKRILEFIAVSQLKGTTQ-----GKI---LCFYGPPGVGKTSIAKSI 401
+ D GM + K + EF V LK + K+ GPPG GKT +AK++
Sbjct: 2 GVSFKDVAGMHEAKLEVREF--VDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAV 59
Query: 402 ARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKI 460
A + ++ G ++ E+ G +V K+ + P +V IDE+D +
Sbjct: 60 ATEAQVPF--LAMAG-AEFVEV------IGGLGAARVRSLFKEARARAPCIVYIDEIDAV 110
Query: 461 GK 462
GK
Sbjct: 111 GK 112
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 46.2 bits (110), Expect = 4e-05
Identities = 41/228 (17%), Positives = 73/228 (32%), Gaps = 63/228 (27%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKI--LCFYGPPGVGKTSIAKSIARALNREYFR 411
D G ++ R+ + G + + G PG+GKT+ +A L +
Sbjct: 21 SDIVGNKETIDRLQQIAK--------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYA 72
Query: 412 FSV--------GGMSDVAE-IKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGK 462
V G+ V IK + + PGK K +V++DE D
Sbjct: 73 DGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGK----HK-------IVILDEADS--- 118
Query: 463 GYSGDPASALLEMLDPEQNA--NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEM 520
M Q A ++ Y + F N + I EPL+ + +
Sbjct: 119 ------------MTAGAQQALRRTMELYSNS------TRFAFACNQSNKIIEPLQSQCAI 160
Query: 521 IDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568
+ S +++E V +I E + ++ +I
Sbjct: 161 LRYS-KLSDEDVLKRLLQIIKL---------EDVKYTNDGLEAIIFTA 198
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 45.2 bits (108), Expect = 6e-05
Identities = 38/140 (27%), Positives = 57/140 (40%), Gaps = 34/140 (24%)
Query: 358 GMEDVKKRILEFIAVSQLK--------GTTQGKILCFYGPPGVGKTSIAKSIAR--ALNR 407
+ED+++ + I ++ ++ G + GPPG GKT +AK++A LN
Sbjct: 14 ALEDIREELTMAI-LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN- 71
Query: 408 EYFRFSVGGMSDVAEI--KGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGKGY 464
F SV G E+ YVG V Q ++ K P V+ DEVD +
Sbjct: 72 --F-ISVKG----PELLNM-----YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR 119
Query: 465 SGDPASA-------LLEMLD 477
S A LL +D
Sbjct: 120 SDRETGASVRVVNQLLTEMD 139
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 45.7 bits (107), Expect = 6e-05
Identities = 32/257 (12%), Positives = 68/257 (26%), Gaps = 19/257 (7%)
Query: 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF 412
+ + RI I S + Q K+ K + + L
Sbjct: 19 RELLKSQVEDFTRIFLPIYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDEL-ITSSAR 75
Query: 413 SVGGMSDVAEIKGHRRTYVGAMPGKVIQ--CMKKTKTENPLVLIDEVDKIGKGYSGDPAS 470
+ D I + A+ K+ + + L ++
Sbjct: 76 KELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTL 135
Query: 471 ALLEMLDPEQNANFLDHYLDVPVDL-SRVLFICTANVIDTIPEPLRDR------MEMIDV 523
L++ + + L ++ S++ IC TI E + I +
Sbjct: 136 ILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKL 195
Query: 524 SGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNYCRESGVRNLQKHIEK 583
+ E + L L ++ I N RE + + ++
Sbjct: 196 NKVDKNELQQMIITRL-------KSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIV 248
Query: 584 VTRKVALTIVKKESDKV 600
+ K+ I + + V
Sbjct: 249 INHKINNKITQLIAKNV 265
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 40.6 bits (95), Expect = 7e-05
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
+ ++C C K F +Y+ ++HI+TH ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 38.3 bits (89), Expect = 4e-04
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 1185 HIRTHTGEKP---YRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
I + E P + C C+K+FK +++ H++TH ++
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 37.9 bits (88), Expect = 5e-04
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 812 HIRTHTGEKP---YVCGEAGCDKSFASATNYKNHMRIHSGEK 850
I + E P + C GC K+F N ++H++ H ++
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 37.5 bits (87), Expect = 7e-04
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 788 SERPFPCPVLGCDRSFT-TSNIRKVHIRTHTGEK 820
++ F C GC ++F NIR HI+TH ++
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRS-HIQTHLEDR 47
Score = 31.4 bits (71), Expect = 0.12
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIR 880
+K + C C K F ++ H H + R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 28.3 bits (63), Expect = 1.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 1140 PECKKTFSSAHHMKVHLRIHSGIR 1163
P C KTF ++++ H++ H R
Sbjct: 24 PGCTKTFKRRYNIRSHIQTHLEDR 47
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 45.0 bits (107), Expect = 9e-05
Identities = 55/267 (20%), Positives = 98/267 (36%), Gaps = 62/267 (23%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT 447
GP GVGKT IA+ +A+ N F + E+ YVG +I+ + +
Sbjct: 57 GPTGVGKTEIARRLAKLANA---PFIKVEATKFTEVG-----YVGKEVDSIIRDLTDSAG 108
Query: 448 E-------NPLVLIDEVDKI---GKGYSGDPAS-----ALLEMLD-PEQNANFLDHYLDV 491
N +V IDE+DKI G+ D + LL +++ +
Sbjct: 109 GAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH------G 162
Query: 492 PVDLSRVLFIC-----TANVIDTIPE-----PLRDRMEMIDVSGYVA---EEKVAIAAQY 538
V +LFI A D IPE P+R + + + + E ++ QY
Sbjct: 163 MVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQY 222
Query: 539 LIPQAMKESGLSPEQITLE--PSAIQVL------IKNYCRESGVRNLQKHIEKVTRKVAL 590
+A+ ++ E + + A++ + + G R L +E++ K++
Sbjct: 223 ---KAL----MATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 275
Query: 591 TIVKKESDKVTVT----NDNLSDFVGK 613
+ V + D L + V
Sbjct: 276 SASDMNGQTVNIDAAYVADALGEVVEN 302
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 45.2 bits (106), Expect = 9e-05
Identities = 51/295 (17%), Positives = 101/295 (34%), Gaps = 45/295 (15%)
Query: 347 QAAKILDDDH-----YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSI 401
+ +L D+ E +R+ E +A L+G L YG G GKT++A+ +
Sbjct: 7 RKRWVLLPDYVPDVLPHREAELRRLAEVLA-PALRGEKPSNALL-YGLTGTGKTAVARLV 64
Query: 402 ARALNREY------FRF----------SVGGMSDVAEIKGHRRTYVG-AMPGKVIQCMKK 444
R L + S +AE G R + G ++ + +K+
Sbjct: 65 LRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124
Query: 445 TKTENP--LVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502
++++DE+D + K G + ++ E V +S V
Sbjct: 125 LSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDR---------VWVSLVGITN 175
Query: 503 TANVIDTIPEPLRDRM--EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITL---- 556
+ ++ + ++ + + Y A + I +A L P+ + L
Sbjct: 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA-EEAFNPGVLDPDVVPLCAAL 234
Query: 557 --EPSAIQVLIKNYCRESGVRNLQKHIEKVTRK-VALTIVKKESDKVTVTNDNLS 608
+ R +G ++ E+V R+ V + E D+V+ L
Sbjct: 235 AAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLP 289
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 44.9 bits (107), Expect = 1e-04
Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 37/143 (25%)
Query: 358 GMEDVKKRILEFIAVSQLK--------GTTQGKILCFYGPPGVGKTSIAKSIAR--ALNR 407
G+EDVK+ + E + ++ G T K + FYGPPG GKT +AK+IA N
Sbjct: 19 GLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN- 76
Query: 408 EYFRFSVGGMSDVAEI--KGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGK-- 462
F S+ G E+ + G V + K + P VL DE+D I K
Sbjct: 77 --F-ISIKG----PELLTM-----WFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 124
Query: 463 -GYSGDPASA-------LLEMLD 477
G GD A +L +D
Sbjct: 125 GGNIGDGGGAADRVINQILTEMD 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 43.9 bits (104), Expect = 1e-04
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF 412
D + G + F+A + + + K L +G GVGKT + +IA L +
Sbjct: 28 DLNDDGRIKAIRFAERFVA--EYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85
Query: 413 SVGGMSD-VAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEV 457
+ + + E+K + + + +KK P++++D++
Sbjct: 86 LIVYVPELFRELK---HSLQDQTMNEKLDYIKKV----PVLMLDDL 124
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 39.7 bits (92), Expect = 1e-04
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 1193 KPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
KPY C H C + F G LQ+HVR HT E
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGE 29
Score = 37.8 bits (87), Expect = 4e-04
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
++PY C +C++ F+ + + H+R HTGEK
Sbjct: 1 MKPYVC--IHCQRQFADPGALQRHVRIHTGEK 30
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
KPYVC C + FA + H+RIH+GEK
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGEK 30
Score = 30.1 bits (67), Expect = 0.24
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 790 RPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
+P+ C + C R F + H+R HTGEK
Sbjct: 2 KPYVC--IHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.7 bits (66), Expect = 0.30
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 850 KPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
KPYVC CQ++F + +L +H +H+
Sbjct: 2 KPYVC--IHCQRQFADPGALQRHVRIHT 27
Score = 29.7 bits (66), Expect = 0.36
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSG 1161
VC C++ F+ ++ H+RIH+G
Sbjct: 5 VCIHCQRQFADPGALQRHVRIHTG 28
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 45.6 bits (108), Expect = 1e-04
Identities = 29/188 (15%), Positives = 74/188 (39%), Gaps = 19/188 (10%)
Query: 128 MQMAAENDDNFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMNPLYKEQ---LMILLQQ 184
+ + + ++ + L + +S++ + L E + +++ + ++ L + L++
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNL-AEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Query: 185 ENSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLM-LSLSLLKKELELNKLQQK 243
E +L EG + ++ ++ L L KKE EL +
Sbjct: 1051 EEKS-------RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 244 IGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVL 303
+ E +K + L+ + ++++L EK ++ E++ R+ ++ +E L
Sbjct: 1104 LEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE-------LEAL 1156
Query: 304 NEELAKLG 311
EL
Sbjct: 1157 KTELEDTL 1164
Score = 35.2 bits (81), Expect = 0.16
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 210 EQQAILEEMDIPKRLMLSLSLLKKELE--LNKLQQKIGREVEEKVKQQHRKYILQEQLKA 267
E QA L ++ + +ELE ++ LQ+ + E + K + +K L E+L+A
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEA 1155
Query: 268 IKKELGLEKDDKDAIEEKFRERIKDKK 294
+K EL D +E KD
Sbjct: 1156 LKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 34.0 bits (78), Expect = 0.36
Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 210 EQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIK 269
Q + E K++ + L+++LE + + + EKV + +++ + ++
Sbjct: 942 RSQQLQAEK---KKMQQQMLDLEEQLE--EEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 270 KELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKL 310
+ ++ +EE+ + + + L + K
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Score = 33.7 bits (77), Expect = 0.46
Identities = 19/106 (17%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 210 EQQAILEEMDIPKRLMLSLSLLKKELE-----LNKLQQKIGREVEEKVKQQHRKYILQEQ 264
E + E ++ RL L++ L + + +++ + EK K Q + L+EQ
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 265 LKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKL 310
L+ + + +K + K ++ D + ++ ++ KL
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDD-------ILIMEDQNNKL 1002
Score = 32.9 bits (75), Expect = 0.93
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 210 EQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYI-LQEQLKAI 268
E + IL EM+ + + + E K+QQ++ ++EE+++++ LQ +
Sbjct: 924 ELEEILHEMEA-RIEEEEERSQQLQAEKKKMQQQM-LDLEEQLEEEEAARQKLQLEKVTA 981
Query: 269 KKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELA 308
++ +DD +E++ + K++K+ + L LA
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 44.8 bits (105), Expect = 2e-04
Identities = 29/204 (14%), Positives = 62/204 (30%), Gaps = 10/204 (4%)
Query: 360 EDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSD 419
ED+ + I +K + L F G G GKT ++K I +
Sbjct: 26 EDILRDAAIAIR-YFVKNEVKFSNL-FLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVK 83
Query: 420 VAEIKGHR-RTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPAS--ALLEML 476
A + A+ + + + + E K + + + L E+
Sbjct: 84 QAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVD 143
Query: 477 DPEQNANFLDHYLDVPVDLSRVLFICTAN---VIDTIPEPLRDRM-EMIDVSGYVAEEKV 532
+ + + + I +N V D + + + + Y AE+
Sbjct: 144 TLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLK 203
Query: 533 AIAAQYLIPQAMKESGLSPEQITL 556
I ++Y + + E ++
Sbjct: 204 FILSKY-AEYGLIKGTYDDEILSY 226
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 38.8 bits (90), Expect = 2e-04
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTD 1221
++PY C H C K+F + DL +H ++H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 36.9 bits (85), Expect = 0.001
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIHS 847
++PY C GCDK+F + H + H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 34.2 bits (78), Expect = 0.009
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHT 1190
RPY C C+KAF + H ++H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 33.8 bits (77), Expect = 0.013
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 789 ERPFPCPVLGCDRSFTTSNIRKVHIRTHT 817
+RP+ C GCD++F ++ H ++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 31.9 bits (72), Expect = 0.052
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
++PY C C K F L +H H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.8 bits (100), Expect = 2e-04
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 24/83 (28%)
Query: 210 EQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIK 269
EQ+ L+E+D + E E + +K ++EE +++ EQ++ K
Sbjct: 93 EQRKRLQELDAASK--------VMEQEWREKAKK---DLEE----WNQRQ--SEQVEKNK 135
Query: 270 KELGLEKDDKDAIEEKFRERIKD 292
++ A ++ F ++
Sbjct: 136 IN------NRIA-DKAFYQQPDA 151
Score = 32.4 bits (73), Expect = 0.58
Identities = 11/83 (13%), Positives = 32/83 (38%), Gaps = 20/83 (24%)
Query: 246 REVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNE 305
+ E +++ R +EQ K +++ K + EK ++ +++ + +E
Sbjct: 81 TQEPESIRKW-R----EEQRKRLQELDAASKVMEQEWREKAKKDLEE------WNQRQSE 129
Query: 306 ELAKL---------GFLESHSSE 319
++ K F + ++
Sbjct: 130 QVEKNKINNRIADKAFYQQPDAD 152
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 42.4 bits (99), Expect = 2e-04
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSD 419
+++ G GK+ I + + L + F V + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 43.7 bits (103), Expect = 3e-04
Identities = 33/229 (14%), Positives = 71/229 (31%), Gaps = 55/229 (24%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKI--LCFYGPPGVGKTSIAKSIARAL-NREYF 410
D+ + + + + + + FYGPPG GKTS ++ + L +
Sbjct: 37 DEVTAQDHAVTVLKKTLK--------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLM 88
Query: 411 RFSV--------GGMSDVAE-IKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIG 461
+ + G+S V E +K R V ++ + ++++DE D
Sbjct: 89 KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYK--IIILDEADS-- 144
Query: 462 KGYSGDPASALLEMLDPEQNA--NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRME 519
M Q+A ++ Y F N + I +PL +
Sbjct: 145 -------------MTADAQSALRRTMETY------SGVTRFCLICNYVTRIIDPLASQCS 185
Query: 520 MIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPSAIQVLIKNY 568
+ +++ Q E + + ++ ++
Sbjct: 186 KFRFK-ALDASNAIDRLRFISEQ---------ENVKCDDGVLERILDIS 224
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 43.4 bits (102), Expect = 4e-04
Identities = 45/271 (16%), Positives = 87/271 (32%), Gaps = 61/271 (22%)
Query: 343 LDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIA 402
LD + G + R + +G G+ + G PG GKT+IA +A
Sbjct: 33 LDDALEPRQASQGMVGQLAAR-RAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMA 91
Query: 403 RALNREYFRFSVGGM--------------------SDVAEIKGHRRTY-------VGAMP 435
+AL + ++ G V G T + +
Sbjct: 92 QALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRT 151
Query: 436 GKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLE---------MLDPEQNANFLD 486
+ E + ++++ + + + ++ MLD E +FL+
Sbjct: 152 QGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESF-SFLN 210
Query: 487 HYLDVPVDLSRVLFICTANVIDT-----------IPEPLRDRMEMIDVSGYVAEEKVAIA 535
L+ ++ VL + T I IP L DR+ ++ + Y ++ I
Sbjct: 211 RALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQI- 267
Query: 536 AQYLIPQAMKESGLSPEQITLEPSAIQVLIK 566
+ +E E + + A VL +
Sbjct: 268 ----LRIRCEE-----EDVEMSEDAYTVLTR 289
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 43.4 bits (102), Expect = 4e-04
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 20/173 (11%)
Query: 354 DDHYGMEDVKKRILEFIAVSQL------KGTTQGKILCFYGPPGVGKTSIAKSIARALNR 407
D G+E K+ + E + + T + + +GPPG GK+ +AK++A N
Sbjct: 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN 193
Query: 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGKGYSG 466
F FS+ V++ ++G V + + P ++ IDE+D + S
Sbjct: 194 STF-FSISSSDLVSK-------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 245
Query: 467 DPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRME 519
+ + A + FL V VD +L + N+ + +R R E
Sbjct: 246 NESEAARRIK-----TEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE 293
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 42.9 bits (101), Expect = 4e-04
Identities = 28/187 (14%), Positives = 69/187 (36%), Gaps = 35/187 (18%)
Query: 242 QKIGREVEEKVKQQHRKY--ILQE-----QLKAIKKELGLEKDDKDAIEEKFRERIKDKK 294
+KIG + + + ++Q ++ + + L ++ + KF + + +++
Sbjct: 2 EKIGETMAKLGQNTRVNSDQLIQTILADPEVASFISQHHLSQEQINLSLSKFNQFLVERQ 61
Query: 295 --------------VPPPVMEVLNEELAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSE 340
P M +++ L E ++ + L SLP +
Sbjct: 62 KYQLKDPSYIAKGYQPILAMNEGYADVSYLETKELVEAQKQAAISERIQLVSLPKSYRHI 121
Query: 341 --ENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIA 398
++D+ ++ + IL+F+ + + + K L YG G+GK+ +
Sbjct: 122 HLSDIDV---------NNASRMEAFSAILDFV---EQYPSAEQKGLYLYGDMGIGKSYLL 169
Query: 399 KSIARAL 405
++A L
Sbjct: 170 AAMAHEL 176
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 41.6 bits (98), Expect = 4e-04
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 32/117 (27%)
Query: 353 DDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF 412
+ I F+ + +GK L F G PGVGKT +A + +A+
Sbjct: 13 HPKNVSQNRALLTIRVFVHNFNPE---EGKGLTFVGSPGVGKTHLAVATLKAI------- 62
Query: 413 SVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTEN------------PLVLIDEV 457
E KG R + +I +K E P++++D++
Sbjct: 63 --------YEKKGIRGYFFDTK--DLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDL 109
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 42.3 bits (100), Expect = 5e-04
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 345 LTQAAKILDDDHYGMEDVK---KRILEFIAVSQLKGTTQGKI---LCFYGPPGVGKTSIA 398
LT+A K+ D G E+ K K I+EF+ +I + GPPGVGKT +A
Sbjct: 31 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90
Query: 399 KSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEV 457
+++A + + G SD E+ +VG +V + K P +V IDE+
Sbjct: 91 RAVAGEARVPF--ITASG-SDFVEM------FVGVGAARVRDLFETAKRHAPCIVFIDEI 141
Query: 458 DKIGK 462
D +G+
Sbjct: 142 DAVGR 146
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR
{Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 37.8 bits (87), Expect = 6e-04
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 1189 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTD 1221
+G++P+ C C +F T + +H++ HTD
Sbjct: 2 SSGKRPFVC--RICLSAFTTKANCARHLKVHTD 32
Score = 35.9 bits (82), Expect = 0.003
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSD 878
SG++P+VC++ C FT ++ +H VH+D
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHTD 32
Score = 34.7 bits (79), Expect = 0.007
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 816 HTGEKPYVCGEAGCDKSFASATNYKNHMRIHS 847
+G++P+VC C +F + N H+++H+
Sbjct: 2 SSGKRPFVC--RICLSAFTTKANCARHLKVHT 31
Score = 34.3 bits (78), Expect = 0.008
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHT 1190
SG RP+ C + C AF+T+ + H++ HT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHT 31
Score = 30.9 bits (69), Expect = 0.13
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHT 817
+ +RPF C + C +FTT H++ HT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHT 31
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 41.2 bits (96), Expect = 7e-04
Identities = 30/187 (16%), Positives = 54/187 (28%), Gaps = 29/187 (15%)
Query: 374 QLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA 433
+ G IL G PG GK++IA+++A F SD G
Sbjct: 2 NMTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFH----SDDL----WGYIKHGR 53
Query: 434 MPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPV 493
+ + Q + +++ + Y+ + + LD ++L + +
Sbjct: 54 IDPWLPQ-----SHQQNRMIMQIAADVAGRYAKEGYFVI---LDGVVRPDWLPAFTALAR 105
Query: 494 DLSRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKE------S 547
L + V+ T +R VA E S
Sbjct: 106 PLHYI-------VLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVS 158
Query: 548 GLSPEQI 554
G +Q
Sbjct: 159 GKDTDQA 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 42.3 bits (99), Expect = 7e-04
Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 35/203 (17%)
Query: 327 LDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCF 386
LD + + S + + L M+ V L+ + + + + F
Sbjct: 119 LDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCM----VYNIPKKRYWLF 174
Query: 387 YGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK 446
GP GKT++A ++ + +V D + + +
Sbjct: 175 KGPIDSGKTTLAAALLELCGGKA--LNVNLPLD----RLN----------FELGVAIDQF 218
Query: 447 TENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVD-----LSRVLF- 500
LV+ ++V G P+ + LD ++ LD + V ++ +F
Sbjct: 219 ----LVVFEDVKGTGGESRDLPSGQGINNLDNLRDY--LDGSVKVNLEKKHLNKRTQIFP 272
Query: 501 --ICTANVIDTIPEPLRDRMEMI 521
I T N ++P+ L+ R
Sbjct: 273 PGIVTMNE-YSVPKTLQARFVKQ 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 41.1 bits (96), Expect = 7e-04
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFR 411
G ++ G P GKT++++++A L
Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 42.8 bits (101), Expect = 8e-04
Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 157 MQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALT---GAEGTEQQA 213
+Q +++ + +E I++Q+ + Y L A + +
Sbjct: 845 LQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKR 904
Query: 214 ILEEMDIPKRLMLSLSLLKKELE--LNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKE 271
L+++ I R + L LE + +LQ+KI + +E + L+ ++
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964
Query: 272 LGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKL 310
L + + EE+ + L EE+AKL
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVL-------SLQEEIAKL 996
Score = 41.2 bits (97), Expect = 0.002
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Query: 211 QQAILEEMDIPKRLMLSLSLLKKEL-----ELNKLQQKIGREVEEKVKQQHRKYILQEQL 265
Q+ I E+ K L+ ++ L+ +L +++ EE +R LQE++
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 266 KAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAK 309
++KEL + +K IEE + + E L EL +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHE-------TEQLVSELKE 1030
Score = 31.6 bits (72), Expect = 1.9
Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 210 EQQAILEEMDIPKRLMLSLSLLKKELE--LNKLQQKIGREVEEKVKQQHRKYILQEQLKA 267
++ EE+ ++ + KK +E +K + + + V E +Q + E+ +
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL--LKTEKEEL 1042
Query: 268 IKKELGLEKDDKDAIEEKFRERIKDKK 294
++ K+ + +E+K E K +
Sbjct: 1043 NRRIHDQAKEITETMEKKLVEETKQLE 1069
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 41.6 bits (98), Expect = 0.001
Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 49/194 (25%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKI--LCFYGP-PGVGKTSIAKSIARALNREYF 410
D+ K+ + +GKI + + P PG GKT++AK++ +N +
Sbjct: 26 DECILPAFDKETFKSITS--------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77
Query: 411 RF--SVGGMSDVAE-IKGHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKIGKGYSGD 467
S + V + KVI +IDE D+ G
Sbjct: 78 FVNGSDCKIDFVRGPLTNFASAASFDGRQKVI-------------VIDEFDRSG------ 118
Query: 468 PASALLEMLDPEQNA--NFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRMEMIDVSG 525
A + Q +F++ Y I TAN ID I +PL+ R +I
Sbjct: 119 LAES--------QRHLRSFMEAYSSN----CS--IIITANNIDGIIKPLQSRCRVITFGQ 164
Query: 526 YVAEEKVAIAAQYL 539
E+K+ + Q +
Sbjct: 165 PTDEDKIEMMKQMI 178
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 40.3 bits (94), Expect = 0.001
Identities = 25/184 (13%), Positives = 51/184 (27%), Gaps = 37/184 (20%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREY------FRFSVGGMSDVAEIKGHRRTYVGAMP 435
K+ GP GVGK++ K +A L+ V G +
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWES---DELLALTW 59
Query: 436 GKVIQCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDL 495
+ V++D + D A AL + + + + ++ + +
Sbjct: 60 KNITDLTVNFLLAQNDVVLDYI------AFPDEAEALAQTVQ-AKVDDVEIRFIILWTN- 111
Query: 496 SRVLFICTANVIDTIPEPLRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKE-----SGLS 550
E L R + + E + + ++ + S L
Sbjct: 112 ---------------REELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQ 156
Query: 551 PEQI 554
P +
Sbjct: 157 PTNL 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 41.7 bits (98), Expect = 0.002
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 358 GMEDVKKRILEFIAVSQLKGTTQGKI-------LCFYGPPGVGKTSIAKSIARALNREYF 410
G +I E + + I + YGPPG GKT IA+++A +F
Sbjct: 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFF 267
Query: 411 RFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIG 461
+ EI G + + ++ + P ++ IDE+D I
Sbjct: 268 LIN------GPEIMS---KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 40.8 bits (96), Expect = 0.002
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 350 KILDDDHYGMEDVK---KRILEFIAVSQLKGTTQGKI---LCFYGPPGVGKTSIAKSIAR 403
K D G ++ K ++E++ GKI + GPPG GKT +AK+IA
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67
Query: 404 ALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP-LVLIDEVDKIGK 462
+ F++ G SD E+ +VG +V ++ K P ++ IDE+D +G+
Sbjct: 68 EAKVPF--FTISG-SDFVEM------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR 118
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6
motif two domain P transport protein; HET: NAG B12;
2.60A {Homo sapiens} PDB: 3kq4_A*
Length = 399
Score = 40.9 bits (95), Expect = 0.002
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 58 LNGKKNAPETNQIKKGSGQGNAKSSGKSSGKPEAKSDKVVVSYSL---WVGSNVTAQHSI 114
L GK + Q+ + + G + + V Y++ G + +I
Sbjct: 257 LKGKTYL-DVPQVTCSPDHEVQPTLPSNPGPGPTSASNITVIYTINNQLRGVELLFNETI 315
Query: 115 NITTDYNDTFYHVMQMAAENDDNFN 139
N++ V++ A + F
Sbjct: 316 NVSVKSGSVLLVVLEEAQRKNPMFK 340
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 40.4 bits (95), Expect = 0.002
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 387 YGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK 446
GPPGVGKT +A+++A + + G SD E+ +VG +V + K
Sbjct: 55 VGPPGVGKTHLARAVAGEARVPF--ITASG-SDFVEM------FVGVGAARVRDLFETAK 105
Query: 447 TENP-LVLIDEVDKIGK 462
P +V IDE+D +G+
Sbjct: 106 RHAPCIVFIDEIDAVGR 122
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 40.3 bits (95), Expect = 0.002
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 387 YGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK 446
GPPG GKT +AK++A + + FS+GG S E+ +VG +V + K
Sbjct: 50 VGPPGTGKTLLAKAVAGEAHVPF--FSMGG-SSFIEM------FVGLGASRVRDLFETAK 100
Query: 447 TENP-LVLIDEVDKIGK 462
+ P ++ IDE+D IGK
Sbjct: 101 KQAPSIIFIDEIDAIGK 117
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 40.3 bits (95), Expect = 0.003
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 386 FYGPPGVGKTSIAKSIARALN 406
F G GVGKTSIA+ +A+ LN
Sbjct: 43 FSGTRGVGKTSIARLLAKGLN 63
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 40.2 bits (95), Expect = 0.003
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D + G E +KK + FIA ++ + IL F GP G+GKT++A I+ ++
Sbjct: 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHIL-FSGPAGLGKTTLANIISYEMS 80
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet, structural
genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 102
Score = 37.4 bits (86), Expect = 0.003
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 1150 HHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSR--KAHIRT-HTG---EKPYRCAHEFCS 1203
HH + + Y+C YC F T H+ + H Y C C+
Sbjct: 4 HHHHHNQQNKKVEGGYECK--YCT--FQTPDLNMFTFHVDSEHPNVVLNSSYVCV--ECN 57
Query: 1204 KSFKTSGDLQKHV-RTHTDE 1222
K L +H + H E
Sbjct: 58 FLTKRYDALSEHNLKYHPGE 77
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 35.6 bits (81), Expect = 0.003
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1160 SGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
S + + C EYC K F ++S +AH+R HT EK
Sbjct: 5 SSGKIFTC--EYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 32.9 bits (74), Expect = 0.027
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 1200 EFCSKSFKTSGDLQKHVRTHTDE 1222
E+C+K FK LQ H+R HT+E
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNE 35
Score = 31.0 bits (69), Expect = 0.15
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 1132 TSSENNVCPECKKTFSSAHHMKVHLRIHSG 1161
+S + C C K F H ++ HLRIH+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 28.3 bits (62), Expect = 1.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 829 CDKSFASATNYKNHMRIHSGEK 850
C+K F + + H+RIH+ EK
Sbjct: 15 CNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.3 bits (62), Expect = 1.3
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
+S + F C C++ F + + H+R HT EK
Sbjct: 5 SSGKIFTCEY--CNKVFKFKHSLQAHLRIHTNEK 36
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 39.5 bits (93), Expect = 0.004
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 386 FYGPPGVGKTSIAKSIARALN 406
F G GVGKTSIA+ +A+ LN
Sbjct: 50 FSGTRGVGKTSIARLLAKGLN 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 39.9 bits (94), Expect = 0.004
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D+ G E+VKK++ + ++++G +L GPPG+GKT++A IA L
Sbjct: 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVL-LAGPPGLGKTTLAHIIASELQ 76
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 39.9 bits (94), Expect = 0.004
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 354 DDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
D++ G E +K+++ ++ ++ + +L +GPPG+GKT++A IA L
Sbjct: 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLL-LFGPPGLGKTTLAHVIAHELG 63
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 39.6 bits (93), Expect = 0.005
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 387 YGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTK 446
YGPPG GKT +AK++A N + R V G V + ++G V K K
Sbjct: 57 YGPPGTGKTLLAKAVATETNATFIR--VVGSELV-------KKFIGEGASLVKDIFKLAK 107
Query: 447 TENP-LVLIDEVDKIG 461
+ P ++ IDE+D I
Sbjct: 108 EKAPSIIFIDEIDAIA 123
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 39.4 bits (92), Expect = 0.006
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 21/173 (12%)
Query: 354 DDHYGMEDVKKRILEFIAVSQL-----KGTTQG-KILCFYGPPGVGKTSIAKSIARALNR 407
+D G+E K+ + E + + KG + + YGPPG GK+ +AK++A N
Sbjct: 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS 110
Query: 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGKGYSG 466
+F S SD+ ++G V Q + P ++ ID+VD +
Sbjct: 111 TFFSVS---SSDLVS------KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE 161
Query: 467 DPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRME 519
+ A + L V D VL + N+ + +R R E
Sbjct: 162 GESEASRRIK-----TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFE 209
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 34.4 bits (78), Expect = 0.006
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 1162 IRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 1191
+RPY C V C K FS ++ + H R HTG
Sbjct: 1 MRPYSCSV--CGKRFSLKHQMETHYRVHTG 28
Score = 34.4 bits (78), Expect = 0.008
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSG 1161
C C K FS H M+ H R+H+G
Sbjct: 5 SCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.8 bits (61), Expect = 1.4
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSG 848
+PY C + C K F+ + H R+H+G
Sbjct: 2 RPYSC--SVCGKRFSLKHQMETHYRVHTG 28
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 39.7 bits (93), Expect = 0.006
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 386 FYGPPGVGKTSIAKSIARALNR-EYFRF 412
GPPG+ K+ IA+ + A F +
Sbjct: 46 LLGPPGIAKSLIARRLKFAFQNARAFEY 73
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 38.9 bits (91), Expect = 0.007
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 386 FYGPPGVGKTSIAKSIARALN 406
PG+G ++ +++R L
Sbjct: 29 IQALPGMGDDALIYALSRYLL 49
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 39.1 bits (90), Expect = 0.007
Identities = 37/287 (12%), Positives = 84/287 (29%), Gaps = 50/287 (17%)
Query: 350 KILDDDH-----YGMEDVKKRILEFIAVSQLKGTTQGKILCFY---GPPGVGKTSIAKSI 401
++ D+++ + + L G + Y G G+GKT++AK
Sbjct: 13 RVFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFT 72
Query: 402 ARALNR---------EYFRFSVGGMSDVAEI----------KGHRRTYVGAMPGKVIQCM 442
+ ++ + + ++ I R K +
Sbjct: 73 VKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDN 132
Query: 443 KKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFIC 502
+ LV++DE + S A+ L L + + ++R+ F+
Sbjct: 133 LYVENHYLLVILDEFQSM--LSSPRIAAEDLYTLL------RVHEEIPSRDGVNRIGFLL 184
Query: 503 TANVID--TIPEPLRDRM-----EMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQIT 555
A+ + + ++ + + Y + E I Q E GL
Sbjct: 185 VASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA------ELGLRDT--V 236
Query: 556 LEPSAIQVLIKNYCRESGVRNLQKHIEKVTRKVALTIVKKESDKVTV 602
EP ++++ Y + G + + D ++
Sbjct: 237 WEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSE 283
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 38.6 bits (90), Expect = 0.010
Identities = 45/176 (25%), Positives = 67/176 (38%), Gaps = 26/176 (14%)
Query: 354 DDHYGMEDVKKRILEFIAVSQL-----KGTTQ-GKILCFYGPPGVGKTSIAKSIARALNR 407
+D G+E K I E + L G K + +GPPG GKT I K IA
Sbjct: 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA 143
Query: 408 EYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCM-KKTKTENP-LVLIDEVDKIGKGYS 465
+F S S + +VG K+++ + + + P ++ IDE+D +
Sbjct: 144 TFFSIS---ASSLTS------KWVGEGE-KMVRALFAVARCQQPAVIFIDEIDSLL-SQR 192
Query: 466 GDPASALLEMLDPEQNANFLDHYLD--VPVDLSRVLFICTANVIDTIPEPLRDRME 519
GD + E FL LD R+L + N I E R R+
Sbjct: 193 GDGEHESSRRIKTE----FLVQ-LDGATTSSEDRILVVGATNRPQEIDEAARRRLV 243
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 35.0 bits (80), Expect = 0.010
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 852 YVCQVRDCQKRFTEYSSLYKHTL-VH------SDIRPFIC--DRCPRSYRQLCTLNVHKK 902
C+ ++C + + L +H L H + P C + C ++ H
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 903 TNH 905
H
Sbjct: 62 AQH 64
Score = 31.6 bits (71), Expect = 0.17
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 822 YVCGEAGCDKSFASATNYKNHM-RIHSGEK------PYVCQVRDCQKRFTEYSSLYKH 872
C C +S +S + + H+ + H + P C DC + +S+ H
Sbjct: 2 LKCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNH 59
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 34.3 bits (78), Expect = 0.011
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHT 817
+ ++PF C GC + FT + VH H
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 30.0 bits (67), Expect = 0.30
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 819 EKPYVCGEAGCDKSFASATNYKNHMRIH 846
+KP++C GC + F + + H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 28.5 bits (63), Expect = 0.95
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 849 EKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
+KP++C C +RFT L H H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.1 bits (77), Expect = 0.012
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 786 HTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTG 818
+ E+P+ CPV C F + H+R+H G
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
Score = 34.1 bits (77), Expect = 0.014
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1189 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQMSG 1227
+GEKPY C C FK + HVR+H SG
Sbjct: 5 SSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVGKSG 41
Score = 32.6 bits (73), Expect = 0.048
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 846 HSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHS 877
SGEKPY C V C RF + H H
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHD 34
Score = 32.2 bits (72), Expect = 0.057
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1159 HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTG 1191
SG +PY CPV C F + H+R+H G
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
Score = 29.5 bits (65), Expect = 0.61
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 876 HSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSN 915
S +P+ C C +++ ++ H +++ PS+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSS 44
Score = 29.1 bits (64), Expect = 0.88
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 816 HTGEKPYVCGEAGCDKSFASATNYKNHMRIHSG 848
+GEKPY C C F H+R H G
Sbjct: 5 SSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDG 35
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 38.1 bits (89), Expect = 0.013
Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 25/175 (14%)
Query: 354 DDHYGMEDVKKRILEFIAV-------SQLKGTTQ-GKILCFYGPPGVGKTSIAKSIARAL 405
+D G+E K+ + E AV KG + + YGPPG GK+ +AK++A
Sbjct: 18 EDVAGLEGAKEALKE--AVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75
Query: 406 NREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGKGY 464
N +F S SD+ K ++G V Q + P ++ ID+VD +
Sbjct: 76 NSTFFSVS---SSDLVS-K-----WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 126
Query: 465 SGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRME 519
+ A + L V D VL + N+ + +R R E
Sbjct: 127 GEGESEASRRIK-----TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFE 176
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 38.1 bits (89), Expect = 0.015
Identities = 39/184 (21%), Positives = 65/184 (35%), Gaps = 41/184 (22%)
Query: 354 DDHYGMEDVKKRILEFIAV----------SQLKGTTQGKILCFYGPPGVGKTSIAKSIAR 403
D G + K+ + E V + L+ +G +L +GPPG GKT +A+++A
Sbjct: 21 TDIAGQDVAKQALQE--MVILPSVRPELFTGLRAPAKGLLL--FGPPGNGKTLLARAVAT 76
Query: 404 ALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKI-G 461
+ + S + + K YVG V + P ++ IDEVD +
Sbjct: 77 ECSATFLNIS---AASLTS-K-----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS 127
Query: 462 KGYSGD-PASA-----LLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLR 515
+ S + AS L D D R++ + N + E
Sbjct: 128 ERSSSEHEASRRLKTEFLVEFDGLPGNP----------DGDRIVVLAATNRPQELDEAAL 177
Query: 516 DRME 519
R
Sbjct: 178 RRFT 181
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 37.4 bits (86), Expect = 0.015
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDV 420
KI G PGVGK+++ + L+ + + D
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 38.1 bits (89), Expect = 0.015
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 28/177 (15%)
Query: 354 DDHYGMEDVKKRILEFIAV----------SQLKGTTQGKILCFYGPPGVGKTSIAKSIAR 403
D G+E K+ + E AV + + +G IL +GPPG GK+ +AK++A
Sbjct: 12 SDVAGLEGAKEALKE--AVILPIKFPHLFTGKRTPWRG-IL-LFGPPGTGKSYLAKAVAT 67
Query: 404 ALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENPLVL-IDEVDKIGK 462
N F FS+ V++ ++G V + + P ++ IDE+D +
Sbjct: 68 EANNSTF-FSISSSDLVSK-------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLC- 118
Query: 463 GYSGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFICTANVIDTIPEPLRDRME 519
G + S + E FL V VD +L + N+ + +R R E
Sbjct: 119 GSRSENESEAARRIKTE----FLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE 171
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 38.4 bits (90), Expect = 0.015
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 32/91 (35%)
Query: 386 FYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRT---YVGAMPG------ 436
F GP GVGKT + +++AL E RF MS+ E R T +GA PG
Sbjct: 493 FAGPTGVGKTEVTVQLSKALGIELLRFD---MSEYME----RHTVSRLIGAPPGYVGFDQ 545
Query: 437 ------KVIQCMKKTKTENP--LVLIDEVDK 459
VI+ +P ++L+DE++K
Sbjct: 546 GGLLTDAVIK--------HPHAVLLLDEIEK 568
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 36.6 bits (85), Expect = 0.018
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYF 410
++ GP K+++A +++ L
Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPII 30
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 37.0 bits (85), Expect = 0.021
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDV 420
+ K++ G PGVG T+ ++ L +E + + V
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 96
Score = 34.8 bits (79), Expect = 0.022
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 1138 VCPECKK-TFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
CP C+ + +K H+ + C +C K + K H+ + P
Sbjct: 36 SCPTCQAVGRKTIEGLKKHMENC-KQEMFTCH--HCGKQLRSLAGMKYHVMANHNSLP 90
Score = 31.8 bits (71), Expect = 0.33
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 825 GEAGCDK----SFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIR 880
G C + K HM ++ + C C K+ + + H + + +
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCH--HCGKQLRSLAGMKYHVMANHNSL 89
Query: 881 PF 882
P
Sbjct: 90 PS 91
Score = 31.0 bits (69), Expect = 0.49
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 1165 YKCPVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
CP T K H+ ++ + C H C K ++ ++ HV
Sbjct: 35 VSCP-TCQAVGRKTIEGLKKHMENC-KQEMFTCHH--CGKQLRSLAGMKYHVMA 84
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB:
2cse_V
Length = 1275
Score = 37.9 bits (87), Expect = 0.022
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 1168 PVEYCEKAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
E S +R T + Y+C CS + DL HV +H
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASHGLH 206
Score = 35.2 bits (80), Expect = 0.19
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 1126 GTVKKSTSSENNVCPECKKTFSSAHHMKVHLRIHS 1160
G ++S C C S + H+ H
Sbjct: 170 GLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 32.5 bits (73), Expect = 1.1
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 799 CDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIHS 847
+ R T + Y C C S + H+ H
Sbjct: 158 TSAIVSKHPARVGLPPTASSGHGYQCHV--CSAVLFSPLDLDAHVASHG 204
Score = 29.4 bits (65), Expect = 8.9
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 875 VHSDIRPFICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSNRVSNQLISIQSS 927
S + C C L+ H ++ S+ + + SS
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISS 226
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 32.8 bits (74), Expect = 0.028
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 793 PCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
PC + C ++FT ++ H+R HTGEK
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 31.7 bits (71), Expect = 0.062
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
+P +C + C KAF+ S AH+R HTGEK
Sbjct: 1 KPCQCVM--CGKAFTQASSLIAHVRQHTGEK 29
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.5 bits (78), Expect = 0.031
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 1138 VCPECKK-TFSSAHHMKVHLRI-HSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEKP 1194
VCP C T + +K H+ + KC +C K F ++ H KP
Sbjct: 26 VCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQ--HCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 30.3 bits (67), Expect = 1.00
Identities = 14/56 (25%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 1165 YKCPVEYCEKAF-STQYSRKAHIRT-HTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
CP C T K H+ + +C H C K FK+ L H
Sbjct: 25 AVCPT--CNVVTRKTLVGLKKHMEVCQKLQDALKCQH--CRKQFKSKAGLNYHTMA 76
Score = 30.3 bits (67), Expect = 1.1
Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 828 GCDKSFASATNYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLV-HSDIRPFICDR 886
G S + R VC + R T L KH V C
Sbjct: 1 GSSGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKT-LVGLKKHMEVCQKLQDALKCQH 59
Query: 887 CPRSYRQLCTLNVHKKTNH 905
C + ++ LN H H
Sbjct: 60 CRKQFKSKAGLNYHTMAEH 78
>2ym9_A Cell invasion protein SIPD; type 3 secretion, T3SS, needle TIP
protein, H pathogen interaction, bacterial pathogenesis,
TIP complex; 3.00A {Salmonella enterica subsp}
Length = 346
Score = 37.0 bits (84), Expect = 0.035
Identities = 34/216 (15%), Positives = 76/216 (35%), Gaps = 18/216 (8%)
Query: 9 SASTLISFKPLAQAPTKAAPPPTSPEPNKKAAKEAKIINDKMLKPKSKPLNGKKNAPETN 68
+ +IS A +A S P + + + + + L L +
Sbjct: 44 RGTDIISLSQAATKIHQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAE 103
Query: 69 QIKKGSGQGNAKSSGKSSGKPEAKSDKVVVSYSLWVGSNVTAQHSINITTDYNDTFYHVM 128
Q + +A +S S P A+ + +W ++ +Q+ I Y + +V+
Sbjct: 104 QNENLRSAFSAPTSALFSASPMAQPRTTISDAEIW---DMVSQNISAIGDSYLGVYENVV 160
Query: 129 QMAAENDDNFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMN---PLYKEQLMILLQQE 185
+ + + S++ S M + +D ++ K L L+ +
Sbjct: 161 AVYTD-----------FYQAFSDILSK-MGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKY 208
Query: 186 NSPVVDNPIYLADLGAALTGAEGTEQQAILEEMDIP 221
N + ++ A G+ + A E + L E+++P
Sbjct: 209 NQINSNTVLFPAQSGSGVKVATEAEARQWLSELNLP 244
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 35.6 bits (83), Expect = 0.036
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYF 410
L G G GK+S+A+ + AL E
Sbjct: 10 LVLIGFMGSGKSSLAQELGLALKLEVL 36
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.5 bits (73), Expect = 0.036
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
+PYKCP C A + + + H+R HTGEK
Sbjct: 8 KPYKCP--QCSYASAIKANLNVHLRKHTGEK 36
Score = 32.1 bits (72), Expect = 0.057
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 817 TGEKPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
+ KPY C + C + A N H+R H+GEK
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGEK 36
Score = 29.4 bits (65), Expect = 0.46
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 787 TSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
+S +P+ CP C + VH+R HTGEK
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGEK 36
Score = 29.0 bits (64), Expect = 0.69
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1190 TGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
+ KPY+C CS + +L H+R HT E
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGE 35
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 36.0 bits (84), Expect = 0.037
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
G PG GK++I + +A+AL
Sbjct: 9 GLPGSGKSTIGRRLAKALGVGLL 31
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 35.8 bits (82), Expect = 0.038
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFR 411
I G G GK+++A +A L+ +
Sbjct: 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 36.3 bits (84), Expect = 0.039
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 361 DVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF 410
D +++IL+ A ++K G+ + G G GKT++ K +AR+L +F
Sbjct: 29 DEEQQILKKKA-EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 35.6 bits (83), Expect = 0.040
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYF 410
+ F G G GK+++A+++A+ L+ +
Sbjct: 7 IVFIGFMGSGKSTLARALAKDLDLVFL 33
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 35.6 bits (83), Expect = 0.045
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
GP G GK++I + +A+ LN E++
Sbjct: 11 GPMGAGKSTIGRQLAQQLNMEFY 33
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 35.2 bits (82), Expect = 0.049
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
G G G T++ + +ARAL E+
Sbjct: 9 GARGCGMTTVGRELARALGYEFV 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 36.3 bits (84), Expect = 0.054
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 354 DDHYGMEDVKKRILEFIAVSQL-----KGTTQ-GKILCFYGPPGVGKTSIAKSIARALNR 407
DD G + K+ + E + + L G + L +GPPG GKT +AK++A N
Sbjct: 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA 174
Query: 408 EYFRFS 413
+F S
Sbjct: 175 TFFNIS 180
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 35.2 bits (82), Expect = 0.059
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 384 LCFYGPPGVGKTSIAKSIARALNREYF 410
+ G GK+++ ++R+LN ++
Sbjct: 3 IYLIGFMCSGKSTVGSLLSRSLNIPFY 29
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 36.2 bits (83), Expect = 0.062
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 358 GMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGM 417
+ +L+ + + G PG GK++IA+ + + +N +Y F
Sbjct: 3 DTHKLADDVLQLL--DNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHP 60
Query: 418 SDVAEIKGHR 427
+ + +
Sbjct: 61 NVIEVNDRLK 70
Score = 30.4 bits (68), Expect = 4.1
Identities = 3/51 (5%), Positives = 11/51 (21%)
Query: 358 GMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE 408
+D + + + + G ++ +N
Sbjct: 96 LFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVN 146
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 36.3 bits (83), Expect = 0.063
Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 33/188 (17%)
Query: 351 ILDDDHYGMEDVKK-RILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY 409
+ + D+ K R L + + K++ G PG GKT I +N E
Sbjct: 130 AVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTK---EILSRVNFEE 186
Query: 410 FRFSVGGMSDVAEIK---------GHRRTYVGAMPGKVIQCMKKTKTENPLVLIDEVDKI 460
V G I+ + V + ++ K + + + IDE +
Sbjct: 187 DLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML 246
Query: 461 GKGY---------------SGDPASALLEMLDPEQNANFLDHYLDVPVDLSRVLFI---C 502
G GD + ++ + H+ + VD C
Sbjct: 247 HTGCVNFLVEMSLCDIAYVYGDTQQ--IPYINRVTGFPYPAHFAKLEVDEVETRRTTLRC 304
Query: 503 TANVIDTI 510
A+V +
Sbjct: 305 PADVTHFL 312
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 35.3 bits (82), Expect = 0.065
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
G G GKTS+ +A+ R +
Sbjct: 12 GLMGAGKTSVGSQLAKLTKRILY 34
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus,
HPV E6 protein, de novo protein; NMR {Synthetic} SCOP:
k.12.1.1
Length = 33
Score = 31.4 bits (71), Expect = 0.083
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIRPYK 1166
CPEC K F + H+ H+ +H + +
Sbjct: 4 ACPECPKRFMRSDHLSKHITLHELLGEER 32
Score = 29.1 bits (65), Expect = 0.51
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 1195 YRCAHEFCSKSFKTSGDLQKHVRTHTD 1221
Y+ A C K F S L KH+ H
Sbjct: 1 YKFACPECPKRFMRSDHLSKHITLHEL 27
Score = 28.0 bits (62), Expect = 1.4
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEKP 821
F CP C + F S+ HI H
Sbjct: 3 FACPE--CPKRFMRSDHLSKHITLHELLGE 30
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 34.6 bits (79), Expect = 0.084
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
G PGVGKT++ K +A +Y
Sbjct: 18 GTPGVGKTTLGKELASKSGLKYI 40
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 34.6 bits (79), Expect = 0.095
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTY 430
G PGVGKT++ K I L + F V + + +RT
Sbjct: 7 GEPGVGKTTLVKKIVERLGKRAIGFWTEE---VRDPETKKRTG 46
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 35.3 bits (81), Expect = 0.11
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
LKG + L F GPP GK+ + S+ L
Sbjct: 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 35.4 bits (81), Expect = 0.15
Identities = 22/157 (14%), Positives = 43/157 (27%), Gaps = 22/157 (14%)
Query: 247 EVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEE 306
E K R + L+ +++ D + + D + ++
Sbjct: 40 HSELISKMSTRLERIANFLRIYRRQASELGPLIDFFNYNNQSHLADFL-----EDYIDFA 94
Query: 307 LAKLGFLESHSSEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRI 366
+ + L +R LD L G ++ Y E R+
Sbjct: 95 INEPDLLRPVVIAPQFSRQMLD--RKLLLGNVPKQM------------TCYIREYHVDRV 140
Query: 367 LEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIAR 403
++ + L +G G GK+ IA
Sbjct: 141 IKKL---DEMCDLDSFFLFLHGRAGSGKSVIASQALS 174
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 34.8 bits (80), Expect = 0.15
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
+ G GVGKT+I+ + A + R
Sbjct: 15 TFVFIGGKGGVGKTTISAATALWMARS 41
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus,
HPV E6 protein, de novo protein; NMR {Synthetic} SCOP:
k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 30.6 bits (69), Expect = 0.15
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 1138 VCPECKKTFSSAHHMKVHLRIHSGIR 1163
CPEC K F + H+ +H+ +H +
Sbjct: 4 ACPECPKRFMRSDHLTLHILLHENKK 29
Score = 29.1 bits (65), Expect = 0.47
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 1195 YRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
Y+ A C K F S L H+ H ++
Sbjct: 1 YKFACPECPKRFMRSDHLTLHILLHENK 28
Score = 28.7 bits (64), Expect = 0.83
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 792 FPCPVLGCDRSFTTSNIRKVHIRTHTGEK 820
F CP C + F S+ +HI H +K
Sbjct: 3 FACPE--CPKRFMRSDHLTLHILLHENKK 29
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 35.0 bits (81), Expect = 0.16
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVI 439
G++L G G+GK++ K +A RF IK R + + K++
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP-EWQEIIKYFRGSELQNYFTKML 160
Query: 440 QCMKKT------KTENPLVLIDEVDKIGKGYSGDP------ASALLEMLDPEQNANFLDH 487
+ K P + V K+G+ +++L E N L
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE---NVLKR 217
Query: 488 YLDVPVDLS 496
++ LS
Sbjct: 218 DIE---KLS 223
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 34.3 bits (79), Expect = 0.16
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 359 MEDVKKRILEFIAVSQLKGTTQGKILCF-YGPPGVGKTSIAKSIARALNREYFR 411
+ + + +LE +L G+ L G PG GK++++ +A AL+ +
Sbjct: 4 LAALCQGVLE-----RLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLP 52
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.17
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1188 THTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHT 1220
+ EK ++C C K+F S L +H R HT
Sbjct: 6 SGQKEKCFKCNK--CEKTFSCSKYLTQHERIHT 36
Score = 30.9 bits (69), Expect = 0.19
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 815 THTGEKPYVCGEAGCDKSFASATNYKNHMRIHS 847
+ EK + C + C+K+F+ + H RIH+
Sbjct: 6 SGQKEKCFKCNK--CEKTFSCSKYLTQHERIHT 36
Score = 30.6 bits (68), Expect = 0.22
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 1118 GSSGGGGGGTVKKSTSSENNVCPECKKTFSSAHHMKVHLRIHS 1160
GSSG G + C +C+KTFS + ++ H RIH+
Sbjct: 1 GSSGSSGQK-------EKCFKCNKCEKTFSCSKYLTQHERIHT 36
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 34.0 bits (78), Expect = 0.18
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALN 406
LKGT + L F GP GK+ S +
Sbjct: 52 LKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium
rectale}
Length = 373
Score = 34.9 bits (80), Expect = 0.18
Identities = 29/261 (11%), Positives = 77/261 (29%), Gaps = 49/261 (18%)
Query: 359 MEDVKKRILEFIA------VSQLKGTTQGKILCFYGPPG-VGKTSIAKSIARALNREYFR 411
++ + K+IL + + + ++ F P G VG +++A + A A +
Sbjct: 115 VDVIFKQILGVYSDMAANVATISGENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKK 174
Query: 412 ---FSVGGMSDVAEIKGHRRTYVGAMPGK----VIQCMKKTKTENPLVLIDEVDKIGKGY 464
++ + A VI + K++ N L+ ++ I +
Sbjct: 175 VFYLNIEQCGTTD-------VFFQAEGNATMSDVIYSL-KSRKANLLLKLESC--IKQSQ 224
Query: 465 SG----DPASALLEM--LDPEQNANFLD------HY----LDVPVDLSR----VLFICTA 504
G L++ + + +Y +D+P L +L
Sbjct: 225 EGVSYFSSTKVALDILEISYADIDTLIGNIQGMDNYDEIIVDLPFSLEIEKLKLLSKAWR 284
Query: 505 NVIDTIPEP-----LRDRMEMIDVSGYVAEEKVAIAAQYLIPQAMKESGLSPEQITLEPS 559
++ E + + + + + + ++ I+++
Sbjct: 285 IIVVNDGSQLSNYKFMRAYESVVLLEQNDDINIIRNMNMIYNKFSNKNSEMLSNISIKTI 344
Query: 560 AIQVLIKNYCRESGVRNLQKH 580
++ + L K
Sbjct: 345 GGAPRYEHATVRQIIEALTKM 365
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 34.5 bits (79), Expect = 0.19
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 367 LEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE 408
L I +L+ K + F G GVGKT+++ + L +
Sbjct: 12 LRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEK 53
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 33.9 bits (77), Expect = 0.19
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 368 EFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRF 412
E + + + + G G GKT+IA +A E+
Sbjct: 16 ENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1
c.56.5.4
Length = 340
Score = 34.5 bits (80), Expect = 0.20
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 24/83 (28%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHTI----------LMPEENKK--DFTDL------------ 760
LPVGG+ + + K V V + L +E F +L
Sbjct: 79 SFLPVGGVDPRILPGKVVQVKNLKGVIGYRPIHLQRDEENTPPRFENLRIDFGFSSADEA 138
Query: 761 PEYIREGLNVHFVSEWRQVYDLV 783
+Y+ G V FVS++ +
Sbjct: 139 KKYVSIGDYVSFVSDYIEKNGRA 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 34.5 bits (79), Expect = 0.21
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 384 LCFYGPPGVGKTSIAKSIARAL 405
L YGP G GK + ++ ++
Sbjct: 39 LLLYGPNGTGKKTRCMALLESI 60
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 32.9 bits (75), Expect = 0.21
Identities = 10/64 (15%), Positives = 32/64 (50%)
Query: 230 LLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRER 289
+ + E +L++ + + + + + + L ++ ++ ++ E+D+ EE+ +
Sbjct: 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74
Query: 290 IKDK 293
IK+K
Sbjct: 75 IKNK 78
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 33.6 bits (78), Expect = 0.22
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 377 GTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
G+ K L G GVG+ I ++ + + F + +
Sbjct: 1 GSHMRKTLVLLGAHGVGRRHIKNTL-ITKHPDRFAYPI 37
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
2.21A {Homo sapiens}
Length = 591
Score = 34.4 bits (79), Expect = 0.23
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 352 LDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSI 401
+ + I + + K + + +G G GK+ +A
Sbjct: 122 RPVVFVTRKKLVNAIQQKL----SKLKGEPGWVTIHGMAGCGKSVLAAEA 167
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP; 1.70A
{Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Length = 158
Score = 33.0 bits (76), Expect = 0.23
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 381 GKILCFYGPPGVGKTSIAKSIARAL 405
++ G G GKT++ + + + +
Sbjct: 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 33.4 bits (77), Expect = 0.25
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
G G GKT++ K+ AR LN +
Sbjct: 32 GYMGAGKTTLGKAFARKLNVPFI 54
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 34.1 bits (78), Expect = 0.25
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
IL F G GV +T IA + A+ L +
Sbjct: 3 LILTFLGKSGVARTKIAIAAAKLLASQ 29
>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI,
structure initiative; 2.15A {Shigella flexneri 2a str}
SCOP: b.49.3.1 c.56.5.4
Length = 348
Score = 34.1 bits (79), Expect = 0.28
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHT--------ILMPEENKKDFTDLPEYIREGL 768
VLPVG ++ + V + T +L + D + + + G
Sbjct: 83 DVLPVGNVRMAARQLQPVRITTREECKIPGLLDGDRQGNDVSAM--RVDIGA 132
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 33.2 bits (75), Expect = 0.29
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRT--YVGAMPGK 437
GPPGVGKT++ + L V G +G RR V + G
Sbjct: 8 GPPGVGKTTLIHKASEVLKSS--GVPVDGFYTEEVRQGGRRIGFDVVTLSGT 57
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 33.7 bits (78), Expect = 0.31
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 386 FYGPPGVGKTSIAKSIARAL 405
F GP GVGKT +AK++A L
Sbjct: 52 FLGPTGVGKTELAKTLAATL 71
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 33.6 bits (77), Expect = 0.33
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
+ YGP GKT +A IA+
Sbjct: 2 LLHLIYGPTCSGKTDMAIQIAQETGWP 28
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 33.4 bits (76), Expect = 0.35
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 327 LDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCF 386
D+L G Q E++ + KIL+ + Y + L + K T +
Sbjct: 58 PDYLV----GQQPVEDISSNRIYKILELNGYDPQYAASVFLGWATKKFGKRNT----IWL 109
Query: 387 YGPPGVGKTSIAKSIARAL 405
+GP GKT+IA++IA +
Sbjct: 110 FGPATTGKTNIAEAIAHTV 128
>3nzz_A Cell invasion protein SIPD; needle TIP protein, PRGI, SIPB, SIPC;
1.65A {Salmonella enterica} PDB: 3o02_A* 3o00_A 3o01_A*
2ym0_A
Length = 308
Score = 33.5 bits (75), Expect = 0.39
Identities = 31/210 (14%), Positives = 76/210 (36%), Gaps = 19/210 (9%)
Query: 17 KPLAQAPTKAAPPPTSPEPNKKAAKEAKIINDKMLKPKSKPLNGKKNAPETNQIKKGSGQ 76
L+QA TK + + ++E +++ L + + A + +
Sbjct: 11 ISLSQAATKIHQAQQTLQSTPPISEENN--DERTLARQQLTSSLNALAKSGVSLSAEQNE 68
Query: 77 G--NAKSSGKSSGKPEAKSDKVVVSYSLWVGSNVTAQHSINITTDYNDTFYHVMQMAAEN 134
+A S+ S+ + + + S ++ +Q+ I Y + +V+ + +
Sbjct: 69 NLRSAFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTD- 127
Query: 135 DDNFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMN---PLYKEQLMILLQQENSPVVD 191
+ S++ S M + +D ++ K L L+ + N +
Sbjct: 128 ----------FYQAFSDILSK-MGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSN 176
Query: 192 NPIYLADLGAALTGAEGTEQQAILEEMDIP 221
++ A G+ + A E + L E+++P
Sbjct: 177 TVLFPAQSGSGVKVATEAEARQWLSELNLP 206
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 32.9 bits (76), Expect = 0.39
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+ + GP G GK+++ K + + F FSV
Sbjct: 2 AGPRPVVLSGPSGAGKSTLLKKL-FQEHSSIFGFSV 36
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (66), Expect = 0.41
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 847 SGEKPYVCQVRDCQKRFTEYSSLYKHTLVH 876
S EK + C R+C + F +Y SL +H ++H
Sbjct: 8 SREKSHQC--RECGEIFFQYVSLIEHQVLH 35
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.8 bits (74), Expect = 0.41
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
G PG GKTS+A+ IA L+
Sbjct: 17 GTPGTGKTSMAEMIAAELDGFQH 39
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 33.7 bits (78), Expect = 0.42
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 386 FYGPPGVGKTSIAKSIARAL 405
F GP GVGKT +A+++A ++
Sbjct: 526 FLGPTGVGKTELARALAESI 545
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 32.4 bits (73), Expect = 0.46
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 8/94 (8%)
Query: 1128 VKKSTSSENNVCPECKKTFSS--AHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAH 1185
+ KS + CP + R + KCP E C ++
Sbjct: 45 IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL-MVKCPNEGCLHKMELRHLEDHQ 103
Query: 1186 IRTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTH 1219
C C + F+ + H+
Sbjct: 104 AHCEFALMD--C--PQCQRPFQKF-HINIHILKD 132
Score = 30.4 bits (68), Expect = 2.4
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRT 1188
CP+C++ F H+ +H+ R C C + ++ H +
Sbjct: 113 CPQCQRPFQK-FHINIHILKDCPRRQVSCD--NCAASM-AFEDKEIHDQN 158
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc
finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 73
Score = 30.7 bits (68), Expect = 0.49
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 1189 HTGEKPYRCAHEFCSKSFKTSGDLQKHVRT 1218
++ +PYRC H+ C +F +L H +
Sbjct: 22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQA 51
Score = 29.9 bits (66), Expect = 0.72
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 19/87 (21%)
Query: 1122 GGGGGTVKKSTSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYS 1181
G G + +K S++ P +S RPY+C + C AF+ Q +
Sbjct: 1 GSSGSSGRKKPVSQSLEFPT----------------RYSPYRPYRCVHQGCFAAFTIQQN 44
Query: 1182 RKAHIRT-HTGEKPYRCA--HEFCSKS 1205
H + H + P A E S
Sbjct: 45 LILHYQAVHKSDLPAFSAEVEEESGPS 71
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 33.0 bits (75), Expect = 0.51
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
+ + G GVGKT+ + S+A L +
Sbjct: 17 RWIFVGGKGGVGKTTTSCSLAIQLAKV 43
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 33.3 bits (76), Expect = 0.52
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 382 KILCFYGPPGVGKTSIAKSIARAL 405
K + G GVGKT+ + S+A L
Sbjct: 19 KWIFVGGKGGVGKTTTSSSVAVQL 42
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 31.1 bits (70), Expect = 0.59
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 232 KKELELNKLQQKIGREVEE-KVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERI 290
++ +L Q++ EVE K K +H+ +Q+ ++ +L + K+ + + RE
Sbjct: 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE-- 60
Query: 291 KDKKVPPPVMEVLNEEL 307
+E N++L
Sbjct: 61 ---------LEQANDDL 68
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 32.9 bits (76), Expect = 0.59
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 388 GPPGVGKTSIAKSIARALNREYFR 411
G PG+ KT ++A+ ++ ++ R
Sbjct: 53 GVPGLAKTLSVNTLAKTMDLDFHR 76
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.1 bits (64), Expect = 0.60
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIHSGEK 850
KP+ C C+ + S +N K HM HS EK
Sbjct: 8 KPFKCSL--CEYATRSKSNLKAHMNRHSTEK 36
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 33.4 bits (76), Expect = 0.61
Identities = 30/154 (19%), Positives = 60/154 (38%), Gaps = 28/154 (18%)
Query: 144 SLVKDLSEVYSALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAAL 203
+ E ++ V++ +++II + + + IY A+
Sbjct: 826 EWWNETIEAEEEFIRSVMEDIKEIIEVAKIENAKRAY-------------IYTAE----- 867
Query: 204 TGAEGTEQQAILEEMD---IPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYI 260
+ + + E+ D + LM + K E+ K+ QK+ +E VK+ + +
Sbjct: 868 -DWKWKVAEVVSEKRDFKSSMEELMKDSEIRKHGKEVAKIVQKLIKERTFDVKRINEEKA 926
Query: 261 LQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKK 294
L+E + ++KELG+E I E KK
Sbjct: 927 LREAKEFMEKELGIE------IIINPTEDKGGKK 954
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 32.5 bits (75), Expect = 0.62
Identities = 9/35 (25%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+G ++ GP GVGK ++ +++ + F +S+
Sbjct: 7 RGLLIVLSGPSGVGKGTVREAVFKDPETS-FDYSI 40
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 32.2 bits (73), Expect = 0.62
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
GP GVGKT A ++ L +
Sbjct: 12 GPFGVGKTHTAHTLHERLPGSFV 34
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 32.3 bits (74), Expect = 0.62
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 359 MEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+ D + + I + G +L G GKT++A +++ L + V
Sbjct: 3 LRDRIDFLCKTILAIKTAGRL---VLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 33.3 bits (77), Expect = 0.64
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 386 FYGPPGVGKTSIAKSIARAL 405
F GP GVGKT +AK++A L
Sbjct: 593 FLGPTGVGKTELAKTLAATL 612
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family;
helicase, MCM homolog, DNA replication, ATP-binding,
DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Length = 506
Score = 32.9 bits (75), Expect = 0.66
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 23/111 (20%)
Query: 357 YGMEDVKKRILEFIAVSQLKGTTQ--GKI-LCFYGPPGVGKTSIAKSIARALNREYFRFS 413
G E+V K +A+ + ++ + G P V + + R +
Sbjct: 216 PGAEEVGKM----LALQLFSCVGKNSERLHVLLAGYPVVCSEILHHVLDHLAPRGVYV-D 270
Query: 414 VGGMSDV---AEIKGHRRTYV--GAMPGKVIQCMKKTKTENPLVLIDEVDK 459
+ A +K R + GA + ++ +D ++
Sbjct: 271 LRRTELTDLTAVLKEDRGWALRAGAA----------VLADGGILAVDHLEG 311
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 33.1 bits (76), Expect = 0.66
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVI 439
IL G GVGKT++ K +A + + + D +K R + ++
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKD-EVLKRFRGKEIYNYFKEL- 81
Query: 440 QCMKKTKTENPLVLIDEVDKIGKGYSGDPASALLEMLDPEQNANFLDHYLDVP 492
+ + I V+ K G + E+L D ++
Sbjct: 82 ----YSNELKIVHKIQYVEYASKFLKG----TVNEILTKIDERGKKDEVKELL 126
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 33.2 bits (76), Expect = 0.67
Identities = 20/160 (12%), Positives = 50/160 (31%), Gaps = 19/160 (11%)
Query: 259 YILQEQL-KAIKKELGLEKDD-KDAIEEKFRE-RIKDKKVPPPVMEVLNEELAKLGFLES 315
++ + + K + + + A+E R+ + P E ++
Sbjct: 93 FLPRSRAEKGVVHYTRVTPGQARLAVETAVELGRLSEDDSPLFAAEAAATGEGRIYLPHV 152
Query: 316 HSSEFNVTRNYLDWLTSLP-WGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIAVSQ 374
+E + L + P G +++ +A K L ++ +
Sbjct: 153 LRAEKKLASLIRTLLATPPADGAGNDDWAVPKKARKGLSEEQ--------ASVLDQLAGH 204
Query: 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+++ G PG GK++ K++A +
Sbjct: 205 -------RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 32.7 bits (74), Expect = 0.69
Identities = 27/206 (13%), Positives = 59/206 (28%), Gaps = 52/206 (25%)
Query: 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGGMSD---------VAEIKGHRRTYV 431
I G GK+SI K LN Y + + + E++ V
Sbjct: 30 APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLV 89
Query: 432 GAMPG-------------------------------KVIQCMKKTKTENPLVLIDEVDKI 460
+P +++ ++ +N ++++DE ++
Sbjct: 90 KRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 149
Query: 461 GKGYSGDPASALLEMLDPEQNANF--------LDHYLDVPVDLSRVLFICTANVIDTIPE 512
K + AL D + F L + D LF + ++ P
Sbjct: 150 VKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPF 209
Query: 513 PLRDRMEMI----DVSGYVAEEKVAI 534
+ +E + + ++ +
Sbjct: 210 SREEAIEFLRRGFQEADIDFKDYEVV 235
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 32.8 bits (75), Expect = 0.70
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
K + G GVGKT+ + S+A +++
Sbjct: 20 KWIFVGGKGGVGKTTTSCSLAIQMSKV 46
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport
protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A*
2v3n_A* 2v3p_A* 2bb5_A*
Length = 414
Score = 32.9 bits (74), Expect = 0.72
Identities = 3/34 (8%), Positives = 14/34 (41%)
Query: 103 WVGSNVTAQHSINITTDYNDTFYHVMQMAAENDD 136
S ++ + +++ + +++ A E+
Sbjct: 321 LKVSGISPSYRHSVSVPAGSSLEDILKNAQEHGR 354
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 30.2 bits (67), Expect = 0.75
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 1187 RTHTGEKPYRCAHEFCSKSFKTSGDLQKHVRTHTDEFQ 1224
Y+C H C +++ +L H+ H +EFQ
Sbjct: 18 GPRLQNSTYQCKH--CDSKLQSTAELTSHLNIHNEEFQ 53
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 32.1 bits (74), Expect = 0.82
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
QG + P G GK+S+ +++ + + SV
Sbjct: 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 32.4 bits (74), Expect = 0.85
Identities = 20/149 (13%), Positives = 53/149 (35%), Gaps = 22/149 (14%)
Query: 262 QEQLKAIKKELGLEKDDKDAIEEKFRERIKDKKVPPPVMEVLNEELAKLGFLESHSSEFN 321
+ K E + +++ + + V P + + L + G ES +
Sbjct: 5 HHHHSSPKIEERTYPP-QIPAQQELGDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNT- 62
Query: 322 VTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIA-VSQLKGTTQ 380
++ L + A L +++ + +++ + + + + +
Sbjct: 63 -----------------LKKLLRFSVEAGGLTEENV-VGKLQEILCDMLPSADKWQEPIH 104
Query: 381 GKILCFYGPPGVGK-TSIAKSIARALNRE 408
K + +G G GK T++AK A ++ +
Sbjct: 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK 133
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 38
Score = 28.6 bits (63), Expect = 0.97
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 1166 KCPVEYCEKAFSTQYSRKAHIRTHT 1190
KCP + C+ + +Y +AH++ HT
Sbjct: 11 KCPTDGCDYSTPDKYKLQAHLKVHT 35
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear
cluster, zinc finger, DNA-binding protein; 2.10A {Mus
musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 30.7 bits (69), Expect = 1.00
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 1128 VKKSTSSENNVCPECKKTFSSAHHM---KVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKA 1184
+ + + CP C+ K L I + + KCP + C + S
Sbjct: 50 ILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL-MVKCPAQDCNEEVS-LEKYNH 107
Query: 1185 HIRTH 1189
H+ +H
Sbjct: 108 HVSSH 112
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 31.9 bits (73), Expect = 1.0
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 360 EDVKKR----ILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIAR 403
++V E ++ + G+ + GP G GKT++ ++I+
Sbjct: 5 KNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISG 52
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 31.8 bits (73), Expect = 1.0
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
L GP GVGK ++ K + YF FSV
Sbjct: 22 NIYPLVICGPSGVGKGTLIKKL-LNEFPNYFYFSV 55
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 32.5 bits (74), Expect = 1.1
Identities = 42/255 (16%), Positives = 77/255 (30%), Gaps = 27/255 (10%)
Query: 71 KKGSGQGNAKSSGKSSGKPEAKSDKVVVSYSLWVGSNVTAQHSINITTDYNDTFYHVMQM 130
KG K G P+ D++ + VG+ V H+ + + T + MQ
Sbjct: 76 YKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQS 135
Query: 131 AAENDDNFNDHKVSLVKDLSEVYSALMQEVI-KTVRDIISMNPLYKEQLMILLQQENSP- 188
A + + D + V + +++ V D+I L K L N
Sbjct: 136 ALK----------TFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQ 185
Query: 189 ------VVDNPIYLADLGAALTGAEGTEQQAILEEMDIPKRLMLSLS--------LLKKE 234
V+ P+ L G TG T + +L + L +K
Sbjct: 186 VYAVKTVLQRPLSLI-QGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI 244
Query: 235 LELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDKK 294
+ ++ + E + L Q++ + L+K + E +K+
Sbjct: 245 HQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKR 304
Query: 295 VPPPVMEVLNEELAK 309
E L
Sbjct: 305 YRALKRTAERELLMN 319
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 32.0 bits (72), Expect = 1.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 381 GKILCFYGPPGVGKTSIAKSIARAL 405
G + P G GK+ +A +A +
Sbjct: 30 GTVGALVSPGGAGKSMLALQLAAQI 54
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 31.7 bits (73), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+ L GP GVGK ++ K + + FRFS+
Sbjct: 11 RIPPLVVCGPSGVGKGTLIKKV-LSEFPSRFRFSI 44
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 31.6 bits (71), Expect = 1.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 388 GPPGVGKTSIAKSIARALNREYFR 411
G G GK+S+ ++IA A +
Sbjct: 25 GVSGSGKSSVGEAIAEACGYPFIE 48
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 31.4 bits (72), Expect = 1.1
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
K L G GVG++ I ++ + N E F + V
Sbjct: 18 GRKTLVLIGASGVGRSHIKNAL-LSQNPEKFVYPV 51
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 28.1 bits (62), Expect = 1.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 820 KPYVCGEAGCDKSFASATNYKNHMRIH 846
KPYVC C K F ++ NH+R H
Sbjct: 1 KPYVCER--CGKRFVQSSQLANHIRHH 25
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 32.2 bits (73), Expect = 1.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
L F G GVGKTSI+ + A L +
Sbjct: 9 PYLFFTGKGGVGKTSISCATAIRLAEQ 35
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 28.3 bits (62), Expect = 1.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 1163 RPYKCPVEYCEKAFSTQYSRKAHIRTHTGE 1192
R Y CPV CEK+FS K+HI+T+ E
Sbjct: 8 RSYSCPV--CEKSFSEDRLIKSHIKTNHPE 35
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 1.4
Identities = 4/46 (8%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 801 RSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASATNYKNHMRIH 846
+ + + +H GEK + ++ + + + + +
Sbjct: 188 KRLHSMSQETIHRNLARGEKRLQREK--SEQVLDNPEDLRGPIHLS 231
Score = 30.9 bits (69), Expect = 2.0
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 1150 HHMKVHLRIHSGIRPY-KCPVEYCE---KAFSTQYSRKAHIRTHTGEKPYRCAHEFCSKS 1205
H +++ R IRP V Y E K + H GEK + E +
Sbjct: 160 HSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQR--EKSEQV 217
Query: 1206 FKTSGDLQKHVRTHT 1220
DL+ +
Sbjct: 218 LDNPEDLRGPIHLSV 232
Score = 30.2 bits (67), Expect = 3.7
Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 2/55 (3%)
Query: 1139 CPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEKAFSTQYSRKAHIRTHTGEK 1193
+ K S +H + G + + E E+ + I +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQR--EKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 29.8 bits (66), Expect = 4.3
Identities = 10/64 (15%), Positives = 17/64 (26%)
Query: 839 YKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTLN 898
++ I GE V D KR S H + + ++ + L
Sbjct: 166 FRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLR 225
Query: 899 VHKK 902
Sbjct: 226 GPIH 229
Score = 29.0 bits (64), Expect = 8.9
Identities = 0/31 (0%), Positives = 10/31 (32%)
Query: 1129 KKSTSSENNVCPECKKTFSSAHHMKVHLRIH 1159
+ + + ++ + ++ + +
Sbjct: 201 NLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.9 bits (72), Expect = 1.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 388 GPPGVGKTSIAKSIARALNRE 408
GP G G T++ K I AL
Sbjct: 52 GPAGTGATTLTKFIIEALIST 72
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 1.5
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 8/36 (22%)
Query: 1108 LMEEEGGKQTGSSGGGGGGTVKKSTSSENNVCPECK 1143
+M E + + + CPECK
Sbjct: 1 MMTRESIDKRAGR--------RGPNLNIVLTCPECK 28
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 30.8 bits (69), Expect = 1.5
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+ G GKT++ + A RE +R
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 31.8 bits (73), Expect = 1.5
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 387 YGPPGVGKTSIAKSIA 402
GPPGVGKT +A+++A
Sbjct: 70 VGPPGVGKTHLARAVA 85
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 31.8 bits (72), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 382 KILCFYGPPGVGKTSIAKSIARAL 405
K + G GVGKT+ + SIA +
Sbjct: 19 KWIFVGGKGGVGKTTSSCSIAIQM 42
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 31.4 bits (71), Expect = 1.6
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
IL G PGVGK++ +K++A+ L++ V
Sbjct: 8 ILT--GLPGVGKSTFSKNLAKILSKNNIDVIV 37
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 31.4 bits (72), Expect = 1.6
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARAL 405
+G IL G G GK+++ +
Sbjct: 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 30.9 bits (69), Expect = 1.6
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 196 LADLGAALTGAEGTEQQAILEEMDIPKRLMLSLSLLKKEL-----ELNKLQQKIGREVEE 250
L ++ + + E + + L S S K+ L ++ G + E
Sbjct: 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91
Query: 251 KVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKDK 293
Q R LQE++K +K L + ++ ++ K+K
Sbjct: 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEK 134
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 31.8 bits (73), Expect = 1.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 387 YGPPGVGKTSIAKSIA 402
GPPG GKT +A+++A
Sbjct: 55 VGPPGTGKTLLARAVA 70
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.7 bits (72), Expect = 1.8
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 357 YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVG 415
+ + I + + + + YG G GK+ +A R + FS G
Sbjct: 127 VTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGG 181
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 30.9 bits (71), Expect = 1.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 388 GPPGVGKTSIAKSIARALNREY 409
GP GK+S+A+ +A AL Y
Sbjct: 9 GPSASGKSSVARRVAAALGVPY 30
>2lse_A Four helix bundle protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Artificial gene}
Length = 101
Score = 29.3 bits (65), Expect = 1.9
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 242 QKIGREVEEKVKQQHRKYILQEQLKAIKKELGLEKDDKDAIEEKFRERIKD--KKVPPPV 299
+KI EV + + R+ I ++ K +K EL E+ D + EKFR+ ++ K P V
Sbjct: 13 EKILDEVTDGAPDEARERI-EKLAKDVKDEL--EEGDAKNMIEKFRDEMEQMYKDAPNAV 69
Query: 300 MEVLNEELAKL 310
ME L EE+ KL
Sbjct: 70 MEQLLEEIEKL 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 2.0
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 12/33 (36%)
Query: 440 QCMKKTKTENPLVLIDEVDKIGKGYSGDPASAL 472
Q +KK + L K Y+ D A AL
Sbjct: 20 QALKKL--QASL----------KLYADDSAPAL 40
Score = 28.8 bits (63), Expect = 6.7
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 37 KKAAK--EAKIINDKMLKPKSKP 57
K+A K +A + K+ S P
Sbjct: 19 KQALKKLQASL---KLYADDSAP 38
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 31.1 bits (71), Expect = 2.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
K++ G GVGK+ ++ +A+ N E
Sbjct: 3 KVIVIAGTTGVGKSQLSIQLAQKFNGE 29
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 31.1 bits (71), Expect = 2.3
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 50/147 (34%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA----MPGKVIQC-- 441
GP G GKT +A+++A+ L+ ++ + + E G YVG + +++Q
Sbjct: 79 GPTGSGKTLMAQTLAKHLD---IPIAISDATSLTE-AG----YVGEDVENILTRLLQASD 130
Query: 442 MKKTKTENPLVLIDEVDKIGKGYSGDPAS------------ALLEMLD------------ 477
K + +V IDE+DKI + + S ALL++++
Sbjct: 131 WNVQKAQKGIVFIDEIDKISR--LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGR 188
Query: 478 --PEQNANFLDHYLDVPVDLSRVLFIC 502
PE NF+ +D S +LFIC
Sbjct: 189 KHPEG--NFI------QIDTSDILFIC 207
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 30.7 bits (69), Expect = 2.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 388 GPPGVGKTSIAKSIARALNREYF 410
G G GK++I+ I++ L E F
Sbjct: 7 GTVGAGKSTISAEISKKLGYEIF 29
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin;
structural genomics, unknown function, PSI-2, protein
struct initiative; 2.45A {Helicobacter pylori}
Length = 236
Score = 30.5 bits (68), Expect = 2.5
Identities = 14/133 (10%), Positives = 43/133 (32%), Gaps = 12/133 (9%)
Query: 32 SPEPNKKAAKEAKIINDKMLKPKSKPLNGKKNAPETNQIKKGSGQGNAKSSGKSSGKPEA 91
+ +KA ++ + + + + + + G N E
Sbjct: 89 PQDIKEKALLVLRMDGNVAILEDIVEESDALSEEKVIDMSSGYLNLNFV---------EP 139
Query: 92 KSDKVVVSYSLWVGSNVTAQHSINITTDYNDTFYHVMQMAAENDDNFNDHKVSLVKDLSE 151
KS+ ++ S+ + V + + + F + + + + + K +++
Sbjct: 140 KSEDIIHSFGIDVSKIKAVIERVELRRTNSGGFVPKTFVHRIKETDHDQA---IRKIMNQ 196
Query: 152 VYSALMQEVIKTV 164
Y +M + K +
Sbjct: 197 AYHKVMVHITKEL 209
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 31.1 bits (70), Expect = 2.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
K+L G G GK+ ++ +A E
Sbjct: 41 KLLVLMGATGTGKSRLSIDLAAHFPLE 67
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 30.4 bits (68), Expect = 2.7
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF 410
TQ + G G GKT+ + N
Sbjct: 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICL 49
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 30.5 bits (70), Expect = 2.7
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+G ++ GP GVGK ++ K I + +++S+
Sbjct: 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTS-YKYSI 38
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 30.5 bits (68), Expect = 2.7
Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 6/86 (6%)
Query: 23 PTKAAPPPTSPEPNKKAAKEAKIINDKMLKPKSKPLNGKKNAPETNQIKKGSGQGNAKSS 82
T+ P P P +K + K KP KK P K G Q A
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQ----PPKPKKPKPQEKKKKQPAKT--KPGKRQRMALKL 110
Query: 83 GKSSGKPEAKSDKVVVSYSLWVGSNV 108
D V+ ++L + V
Sbjct: 111 EADRLFDVKNEDGDVIGHALAMEGKV 136
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, ADP, DCMP, D
transferase; 2.00A {Mycobacterium smegmatis} PDB: 3r8c_A
4die_A*
Length = 233
Score = 30.5 bits (70), Expect = 2.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 388 GPPGVGKTSIAKSIARALNREY 409
GP G GK+S+++ +ARAL Y
Sbjct: 16 GPAGTGKSSVSRGLARALGARY 37
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 30.1 bits (69), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSV 414
GP G GK+++ K + A + F FSV
Sbjct: 8 GPSGTGKSTLLKKL-FAEYPDSFGFSV 33
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium tumefaciens}
Length = 87
Score = 28.7 bits (64), Expect = 2.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 1127 TVKKSTSSENNVCPECKKTFSSAHHMKVHLRIHSGIRPYKCPVEYCEK 1174
+V+KS ++ VC EC +F S +K HL H + P EY EK
Sbjct: 12 SVRKSVQDDHIVCLECGGSFKS---LKRHLTTHHSMTPE----EYREK 52
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 30.5 bits (68), Expect = 2.9
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYF 410
+ L G VGK++ K + + +
Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 30.6 bits (69), Expect = 2.9
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 341 ENLDLTQAAKI------LDDDHY-GMEDVKKRILEFIAVSQLKGTTQGK-ILCFYGPPGV 392
E +DL + ++ L + + EF+ Q I+ G V
Sbjct: 42 EQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAV 101
Query: 393 GKTSIAKSIARALNREYFRFSVGGMSD 419
GK++ A+ + L R V ++
Sbjct: 102 GKSTTARVLQALLARWDHHPRVDLVTT 128
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown
function; HET: MSE; 1.90A {Bacillus subtilis} SCOP:
b.49.3.1 c.56.5.4
Length = 373
Score = 30.7 bits (70), Expect = 2.9
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHT 746
+ VGG + + A+RV + T
Sbjct: 88 RFQTVGGWWAQVMLAQRVTIVT 109
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.1 bits (59), Expect = 3.2
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 1192 EKPYRCAHEFCSKSFKTSGDLQKHVRTHTDE 1222
K + C + C K FK+ G L+ H HT +
Sbjct: 7 GKTHLC--DMCGKKFKSKGTLKSHKLLHTAD 35
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 30.1 bits (69), Expect = 3.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 388 GPPGVGKTSIAKSIARALNREY 409
GP GK+++AK IA+ Y
Sbjct: 23 GPASSGKSTVAKIIAKDFGFTY 44
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 30.7 bits (69), Expect = 3.2
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
I+ G VGK++ ++ + L+R +V
Sbjct: 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 30.2 bits (69), Expect = 3.4
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 379 TQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+ G IL P G GKT++A + SV
Sbjct: 25 SVGVILVLSSPSGCGKTTVANKLLEKQKNN-IVKSV 59
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 30.6 bits (70), Expect = 3.4
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 46/145 (31%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGA----MPGKVIQC-- 441
GP G GKT +A+++AR L+ F++ + + E G YVG + K++Q
Sbjct: 58 GPTGSGKTLLAETLARLLD---VPFTMADATTLTE-AG----YVGEDVENIIQKLLQKCD 109
Query: 442 MKKTKTENPLVLIDEVDKIGKGYSGDPAS------------ALLEMLD------PEQ--- 480
K + +V ID++DKI + D S ALL++++ P Q
Sbjct: 110 YDVQKAQRGIVYIDQIDKISR--KSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGR 167
Query: 481 ---NANFLDHYLDVPVDLSRVLFIC 502
FL VD S++LFIC
Sbjct: 168 KHPQQEFL------QVDTSKILFIC 186
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 30.1 bits (69), Expect = 3.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 388 GPPGVGKTSIAKSIARALN 406
GP G GK ++ K++A AL
Sbjct: 12 GPSGAGKGTLCKAMAEALQ 30
>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI;
1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4
PDB: 1y0r_A* 1xfo_A
Length = 353
Score = 30.3 bits (69), Expect = 3.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHT 746
+V P+GG+ KT+ A+R V
Sbjct: 86 RVAPIGGVDPKTLIAQRFKVWI 107
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 30.3 bits (68), Expect = 3.5
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 354 DDHYGMEDVKK------RILEFI---------AVSQLKGTTQGK---ILCFYGPPGVGKT 395
++ +E+V + R+L F + Q GT + I+ G VGK+
Sbjct: 35 NEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS 94
Query: 396 SIAKSIARALNREYFRFSVGGMS 418
+ A+ + L+R V ++
Sbjct: 95 TTARVLQALLSRWPEHRRVELIT 117
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A
{Staphylococcus aureus}
Length = 219
Score = 30.1 bits (69), Expect = 3.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 388 GPPGVGKTSIAKSIARALNREY 409
GP GK++IAK +A L+ Y
Sbjct: 10 GPAAAGKSTIAKRVASELSMIY 31
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 30.4 bits (67), Expect = 3.7
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 351 ILDDDHYGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF 410
+ D ++ + + ++I G + F GP G GK+ + I L +Y
Sbjct: 1 MCDKSKTVLDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYG 60
Query: 411 R 411
Sbjct: 61 G 61
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 29.8 bits (68), Expect = 4.0
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 368 EFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+ ++ + G+++ GP VGK+++ + + + FSV
Sbjct: 7 DTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSV 51
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S
specificity, metallopeptidase M42, hydrolas; 2.70A
{Streptococcus pneumoniae}
Length = 355
Score = 30.3 bits (69), Expect = 4.1
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHT 746
+V+ +GG ++++R + T
Sbjct: 85 RVVEIGGWNPMVVSSQRFKLLT 106
>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE;
1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4
Length = 346
Score = 30.4 bits (69), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHT 746
++ PVGG+ K + A +V ++T
Sbjct: 84 RLEPVGGVDPKVVYASKVRIYT 105
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein;
1.65A {Escherichia coli} PDB: 2p6j_A
Length = 52
Score = 27.5 bits (60), Expect = 4.2
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 247 EVEEKVKQQHRKY--ILQEQLKAIKKELGLEKDDKDAIEEKFRE 288
EVE K+K+ R++ I QE L ++LGL ++ AIE+ FRE
Sbjct: 7 EVERKLKEFVRRHQEITQETLHEYAQKLGL---NQQAIEQFFRE 47
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 30.7 bits (69), Expect = 4.2
Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 21/242 (8%)
Query: 147 KDLSEVYSALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIY--LADLGAALT 204
K L ++ + V K + + + E I L + Y + D
Sbjct: 802 KALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRKIQDYRSAYNDIRDWQRREK 861
Query: 205 GAEGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQ 264
AE E+ + D+ + L S + L + R+ + K + +++E
Sbjct: 862 EAEKKEKSTTDWD-DVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGE------MIEEV 914
Query: 265 LKAIKKELGLEKDDKDAIEE-----KFRERIKDKKVPPPVMEVLNEELAKL--GFLESHS 317
+ I+ LG + + + + + + E + ++ +
Sbjct: 915 KRLIRSSLGN-RAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEEN 973
Query: 318 SEFNVTRNYLDWLTSLPWGIQSEENLDLTQAAKILDDDHYGMEDVKKRILEFIA--VSQL 375
+ + Y+ TSL +E +L + L + + K+ + + I + +
Sbjct: 974 LNEDAAKRYIR--TSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVSFIEKF 1031
Query: 376 KG 377
KG
Sbjct: 1032 KG 1033
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled
dodecamer, hyperthermophilic; 2.24A {Pyrococcus
horikoshii} PDB: 2cf4_A
Length = 332
Score = 30.3 bits (69), Expect = 4.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHT 746
+ VGGI ++ + + V V T
Sbjct: 80 RFRKVGGIDDRLLYGRHVNVVT 101
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 4.5
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
IL G GKT++ + L R +V
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAV 35
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.1 bits (67), Expect = 4.6
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 381 GKILCFYGPPGVGKTSIAKSIARALNREYFRF 412
+ G VGK+S+ ++
Sbjct: 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDC 62
>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A
{Curcuma longa} PDB: 3ov3_A
Length = 393
Score = 30.2 bits (68), Expect = 4.6
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 18/95 (18%)
Query: 480 QNANFLDHYLDV------PVDLSRVLFICTANVIDTI-----PEPLRDRMEMIDVSGYVA 528
+ + F D Y V + +C ++ E L++R ++
Sbjct: 32 EQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHLTEEILKERPKLCSYKEASF 91
Query: 529 EEKVAIAAQYLIP-------QAMKESGLSPEQITL 556
+++ I + + +A+KE G +IT
Sbjct: 92 DDRQDIVVEEIPRLAKEAAEKAIKEWGRPKSEITH 126
>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function,
protease, thermophilic, SELF-compartmentalising,
hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2wzn_A
2pe3_A
Length = 354
Score = 30.0 bits (68), Expect = 4.6
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHT 746
++P+GG+ +T+ A+R+ T
Sbjct: 89 HIVPIGGVLPETLVAQRIRFFT 110
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 30.0 bits (68), Expect = 5.5
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 13/137 (9%)
Query: 357 YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGG 416
YG+ L + G ++ GP G GKT+ K +A L +
Sbjct: 101 YGVNAFVLYRLPIVK--------DGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 417 MSDVAEIKGHR-RTYVGAMPGKVI-QCMKKTKTE-NPLVLIDEVDKIGKGYSGDPASALL 473
+ + +G+ + Y + I +K + P + +V ++ K D
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV--DEVGKFE 210
Query: 474 EMLDPEQNANFLDHYLD 490
E++ + N LD L
Sbjct: 211 EVVKELELENVLDRELH 227
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 29.8 bits (68), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
K++ GP VGKT + +A+ LN E
Sbjct: 4 KLVAIVGPTAVGKTKTSVMLAKRLNGE 30
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 30.0 bits (68), Expect = 5.5
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 357 YGMEDVKKRILEFIAVSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYFRFSVGG 416
YG+ L + +G ++ GP G GK++ K +A L +
Sbjct: 31 YGVNAFVLYRLPVVK--------EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 30.0 bits (67), Expect = 5.9
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 374 QLKGTTQGK-------ILCFYGPPGVGKTSIAKSIARALNREYFR---FSVG 415
L + +G ++ G P GKT I+K + R LN F+VG
Sbjct: 25 ALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 29.0 bits (65), Expect = 6.2
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413
+ G PG GK++ A+ N ++ +
Sbjct: 6 LTI--GCPGSGKSTWAREFIAK-NPGFYNIN 33
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 30.2 bits (67), Expect = 6.2
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 882 FICDRCPRSYRQLCTLNVHKKTNHRESKNKKPSNRVSNQLI 922
++C+ C + + L+ H +++HR+ + + + N I
Sbjct: 117 YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAI 157
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex,
type III secretion, T3 complex, HOST pathogen
interaction; HET: DXC; 2.19A {Salmonella enterica subsp}
PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Length = 305
Score = 29.5 bits (65), Expect = 6.3
Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 18/149 (12%)
Query: 76 QGNAKSSGKSSGKPEAKSDKVVVSYSLWVGSNVTAQHSINITTDYNDTFYHVMQMAAEND 135
+ + +W ++ +Q+ I Y + +V+ + +
Sbjct: 70 VFKDIDAAIIQNFRGGSGGTTISDAEIW---DMVSQNISAIGDSYLGVYENVVAVYTD-- 124
Query: 136 DNFNDHKVSLVKDLSEVYSALMQEVIKTVRDIISMN---PLYKEQLMILLQQENSPVVDN 192
+ S++ S M + +D ++ K L L+ + N +
Sbjct: 125 ---------FYQAFSDILSK-MGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNT 174
Query: 193 PIYLADLGAALTGAEGTEQQAILEEMDIP 221
++ A G+ + A E + L E+++P
Sbjct: 175 VLFPAQSGSGVKVATEAEARQWLSELNLP 203
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 29.4 bits (65), Expect = 6.3
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 378 TTQGKILCFYGPPGVGKTSIAKSIARALNREYF 410
T+ K + G GK++ + +
Sbjct: 21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 29.4 bits (67), Expect = 6.4
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 378 TTQGKILCFYGPPGVGKTSIAKSIARALNRE 408
++ + GP GKT +A ++A AL E
Sbjct: 2 SSLPPAIFLMGPTAAGKTDLAMALADALPCE 32
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 29.8 bits (66), Expect = 6.5
Identities = 13/120 (10%), Positives = 20/120 (16%), Gaps = 5/120 (4%)
Query: 778 QVYDLVFEHTSERPFPCPVLGCDRSFTTSNIRKVHIRTHTGEKPYVCGEAGCDKSFASAT 837
L + F F + R AG A A+
Sbjct: 42 DAIRLRVRGDNRSEFAQWF-----YFRLTGARGERCVMTFENANDCAYPAGWRDYRAVAS 96
Query: 838 NYKNHMRIHSGEKPYVCQVRDCQKRFTEYSSLYKHTLVHSDIRPFICDRCPRSYRQLCTL 897
+ + D F Y F+ + L
Sbjct: 97 YDRVNWFRVPTSYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQMPQASVVEL 156
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 29.0 bits (66), Expect = 6.7
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 380 QGKILCFYGPPGVGKTSIAKSIARALNREYFRFSV 414
+ + P G GKTS+ +++ +AL + S+
Sbjct: 6 KANLFIISAPSGAGKTSLVRALVKALAE--IKISI 38
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 29.7 bits (66), Expect = 6.7
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 383 ILCFYGPPGVGKTSIAKSIARALNREYFRFS 413
+ G PG GK++ A+ N ++ +
Sbjct: 6 LTI--GCPGSGKSTWAREFIAK-NPGFYNIN 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.9 bits (67), Expect = 6.9
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 379 TQGKILCFYGPPGVGKTSIAKSIARALNRE 408
++ + L GPPG GKT S RA
Sbjct: 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPDF 1331
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 29.6 bits (65), Expect = 7.0
Identities = 19/156 (12%), Positives = 40/156 (25%), Gaps = 17/156 (10%)
Query: 353 DDDHYGMEDVKKRILEFIA--VSQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNREYF 410
+ ++ + + R+ + + + K G PG GKTS+ +I
Sbjct: 3 NIVNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVI 62
Query: 411 RFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKTENP---LVLIDEVDKIGK----- 462
D K + + +K + +I + G
Sbjct: 63 V------IDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIE 116
Query: 463 GYSGDPASALLEMLDPEQNANFLD-HYLDVPVDLSR 497
G + + + + VP S
Sbjct: 117 GTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSY 152
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 29.5 bits (67), Expect = 7.0
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNRE 408
++ GP GKT ++ +A+ N E
Sbjct: 8 FLIVIVGPTASGKTELSIEVAKKFNGE 34
>3isx_A Endoglucanase; TM1050, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}
Length = 343
Score = 29.5 bits (67), Expect = 7.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 725 KVLPVGGIKEKTIAAKRVGVHT 746
+ PVGG+ + KR+
Sbjct: 90 TIEPVGGVSPYMLLGKRIRFEN 111
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.4 bits (67), Expect = 7.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 373 SQLKGTTQGKILCFYGPPGVGKTSIAKSIARALNRE 408
S + + K + GP GKT++A + + L E
Sbjct: 2 SDISKASLPKAIFLMGPTASGKTALAIELRKILPVE 37
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 28.9 bits (64), Expect = 7.6
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 382 KILCFYGPPGVGKTSIAKSIARALNREYF 410
I+ G G + K +A L ++
Sbjct: 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 29.7 bits (67), Expect = 7.7
Identities = 17/144 (11%), Positives = 36/144 (25%), Gaps = 17/144 (11%)
Query: 148 DLSEVYSALMQEVIKTVRDIISMNPLYKEQLMILLQQENSPVVDNPIYLADLGAALTGAE 207
+ + Q V I + +P E + + S
Sbjct: 141 LIKAKNFLVFQG---DVEQIAAQSP--VELSRMFEEVSGSIQYKKEYEELKEKIEKLSKS 195
Query: 208 GTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKA 267
TE + LK G + + R ++ + +
Sbjct: 196 ATESIKNRRRIH---------GELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQ 246
Query: 268 IKKELGLEKDDKDAIEEKFRERIK 291
+K E EK + + ++R +
Sbjct: 247 LKAE---EKKILNQFLKIKKKRKE 267
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 29.6 bits (66), Expect = 8.1
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Query: 388 GPPGVGKTSIAKSIARALNREYFRFSVGGMSDVAEIKGHRRTYVGAMPGKVIQCMKKTKT 447
PG GK+ AK + + G + + + + + G I C
Sbjct: 42 AKPGAGKSFTAKMLLLRE------YMQGSRVIIIDPEREYKEMCRKLGGVWINCTGGEGK 95
Query: 448 ENPLVLIDEVDKIGKGYSGDPASALLEMLD 477
NPL + + + S L +
Sbjct: 96 INPLQVRLRPVEEEDEENAVFQSPLALHIQ 125
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural
genomics, PSI-2, prote structure initiative; HET: ATP;
2.20A {Chlorobium tepidum}
Length = 245
Score = 29.1 bits (66), Expect = 8.5
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 378 TTQGKILCFYGP-PGVGKTSIAKSIARALNRE 408
+ ++ F G G + IA + A AL++E
Sbjct: 1 SNAKRVFGFVSAKGGDGGSCIAANFAFALSQE 32
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.2 bits (65), Expect = 8.8
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 210 EQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQQHRKYILQEQLKAIK 269
E + I E+ D K ++ L+ E +L + +++ + + + + LK+++
Sbjct: 150 EAKHIAEDADR-KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLE 208
Query: 270 KELGLEKDDKDAIEEKFRE 288
+ +D EE+ +
Sbjct: 209 AQAEKYSQKEDKYEEEIKV 227
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 29.6 bits (67), Expect = 9.1
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 207 EGTEQQAILEEMDIPKRLMLSLSLLKKELELNKLQQKIGREVEEKVKQ---------QHR 257
T QA L+ ++ SL + +L + ++ V + +
Sbjct: 909 SITAVQAKLKNLEAFDGECQSL-EGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQ 967
Query: 258 KYILQEQLKAIKKELGLEKDDKDAIEE 284
++ + K L E + IE+
Sbjct: 968 WTGVKSSAETYKNTLLAELERLQKIED 994
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, MTBI,
transferase; HET: ATM; 1.85A {Staphylococcus aureus
subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 28.8 bits (65), Expect = 9.5
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 375 LKGTTQGKILCFYGPPGVGKTSIAKSIARALNREY 409
+ + F GP G GKT++ + L ++Y
Sbjct: 20 FQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDY 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET:
NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 29.2 bits (66), Expect = 9.8
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 986 LTVARNFLSTIEPDNTFLNTRHLHLH------VPEGA 1016
+ +A ++TI P + LHL V +
Sbjct: 176 IRIADTNITTI-PQGLPPSLTELHLDGNKITKVDAAS 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.378
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,486,431
Number of extensions: 1176632
Number of successful extensions: 6267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5093
Number of HSP's successfully gapped: 1233
Length of query: 1230
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1125
Effective length of database: 3,770,088
Effective search space: 4241349000
Effective search space used: 4241349000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (27.9 bits)