BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy897
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGP-IFKDFA 74
+ LTG TGF+G+ L+ LLRR + LVR + R+EK D+ P + + F
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 75 NL 76
L
Sbjct: 136 EL 137
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 14 GVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERK 51
G + +TGGTGF+G ++ +LL S+++ ERK
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERK 39
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 26/130 (20%)
Query: 14 GVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR-ERKGVS------------PQERIE 60
G LTG TGF+G L++ L H IY +R + + ++ +E +E
Sbjct: 151 GNTLLTGATGFLGAYLIEALQ---GYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVE 207
Query: 61 KMLDNEGPIFKDFANLVRLK-TQRIRFIFLATLRF-----DEELKIAIRTNICATQTVVK 114
ML N I DF + + + + I A R D+E + + N+ T V++
Sbjct: 208 MMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFE---KVNVQGTVDVIR 264
Query: 115 LAKQCPHLRL 124
LA+Q H RL
Sbjct: 265 LAQQ-HHARL 273
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIF----- 70
I +TGG GF+G + L+ + + I G ++ + D+ F
Sbjct: 27 ILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSG--NLNNVKSIQDHPNYYFVKGEI 84
Query: 71 ---KDFANLVRLKTQRIRFIFLATLRFDEELKIAI---RTNICATQTVVKLAKQCPHLRL 124
+ ++++ + ++ F A D ++ I TN+ T T+++L K+ PH++L
Sbjct: 85 QNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKL 144
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of Triphenylmethane
Dyes By Citrobacter Sp. Triphenylmethane Reductase
Length = 287
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR-ERKGVSPQERIE-KMLDNEGP--IFK 71
I +TG TG +G +++ LL++ P+ I I+ E+ + +E + D P + K
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQK 62
Query: 72 DFANLVRLKTQRIRFIFLATLRFDEELKIAIRTNIC 107
FA + +L +F++ +D L I N+
Sbjct: 63 AFAGVSKL-------LFISGPHYDNTLLIVQHANVV 91
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp. Triphenylmethane
Reductase Complexed With Nadp(H)
Length = 287
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR-ERKGVSPQERIE-KMLDNEGP--IFK 71
I +TG TG +G +++ LL++ P+ I I+ E+ + +E + D P + K
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQK 62
Query: 72 DFANLVRLKTQRIRFIFLATLRFDEELKIAIRTNIC 107
FA + +L +F++ +D L I N+
Sbjct: 63 AFAGVSKL-------LFISGPHYDNTLLIVQHANVV 91
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 14 GVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
G LTG TGF+G L++ L H IY +R
Sbjct: 70 GNTLLTGATGFLGAYLIEALQ---GYSHRIYCFIR 101
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
I +TGG GF+G L+D L+ + + I+ R+ G S + + + KD++
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGG-SAELHVRDL--------KDYSW 53
Query: 76 LVRLKTQRIRFIFLAT--LRFD-EELKIAIRTNICATQTVVKLAKQC 119
+K + F F A +R E + N+ AT V++ A+Q
Sbjct: 54 GAGIKGD-VVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT 99
>pdb|2NUW|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure At 1.8 A Resolution
pdb|2NUW|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure At 1.8 A Resolution
pdb|2NUX|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure In P6522 At 2.5 A
Resolution
pdb|2NUX|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius, Native Structure In P6522 At 2.5 A
Resolution
pdb|2NUY|A Chain A, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius In Complex With Pyruvate
pdb|2NUY|B Chain B, 2-Keto-3-Deoxygluconate Aldolase From Sulfolobus
Acidocaldarius In Complex With Pyruvate
Length = 288
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 30 LDTLLRRFPSIHSIYILVRERKGVS---PQERIEKMLDNEG 67
L +LR++ SI +IY+LV E +G P+ I + D E
Sbjct: 229 LADILRKYGSISAIYVLVNEFQGYDVGYPRPPIFPLTDEEA 269
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 35 RRFPSIHSIYILVRERKGVSPQERIEKMLDNEG 67
RF S+ +YI+ E KG+ P+E +DN G
Sbjct: 195 ERFGSVKRVYIVCTEDKGI-PEEFQRWQIDNIG 226
>pdb|1HUS|A Chain A, Ribosomal Protein S7
Length = 155
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 22 TGFMGKVLLDTLLRRFPSI-HSIYILVRERKGVSPQERIEKMLDNEGPIFK 71
T + K+ +D + I ++ + ++RER G P E E+ L N P+ +
Sbjct: 23 TRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEVFEQALKNVXPVLE 73
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 35 RRFPSIHSIYILVRERKGVSPQERIEKMLDNEG 67
RF S+ +YI+ E KG+ P+E +DN G
Sbjct: 195 ERFGSVKRVYIVCTEDKGI-PEEFQRWQIDNIG 226
>pdb|3MMZ|A Chain A, Crystal Structure Of Putative Had Family Hydrolase From
Streptomyces Avermitilis Ma-4680
pdb|3MMZ|B Chain B, Crystal Structure Of Putative Had Family Hydrolase From
Streptomyces Avermitilis Ma-4680
pdb|3MMZ|C Chain C, Crystal Structure Of Putative Had Family Hydrolase From
Streptomyces Avermitilis Ma-4680
pdb|3MMZ|D Chain D, Crystal Structure Of Putative Had Family Hydrolase From
Streptomyces Avermitilis Ma-4680
Length = 176
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 5 PTVEDFYKDGVIFLTGGTGFMGKVLLDTLLRRFPSIH 41
PT ED D V+ GT +VL+D+ R F S+H
Sbjct: 7 PTAEDI--DAVVLDFDGTQTDDRVLIDSDGREFVSVH 41
>pdb|2OT3|A Chain A, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 274
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 3 FYPTVEDFYKDGVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRER---KGVSPQERI 59
F+ T ++ YK +FL G M ++ + Y V ER +G P ER+
Sbjct: 26 FHKTGQEIYKQTKLFLEG----MHYKRDLSIEEQSECAQDFYHNVAERMQTRGKVPPERV 81
Query: 60 EKMLDNEGPIFKDFANLVRLKTQRIRFIFLATLRFDEELKIAIRTNICATQTVV 113
EK++D I K + T+ +++F DE+ +AI+ I A + V
Sbjct: 82 EKIMDQ---IEK------YIMTRLYKYVFCPETTDDEKKDLAIQKRIRALRWVT 126
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 278 FFKDSIILATGATG-TGKTLL 297
>pdb|3CU2|A Chain A, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
pdb|3CU2|B Chain B, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
Length = 237
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 20 GGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFANLVRL 79
GT + +++LD +++ V +R G R+EK+++ +G + A +
Sbjct: 161 NGTKYPSELILDRVIQ-----------VEKRLG---NRRVEKLINIDGSXTLELAKYFKQ 206
Query: 80 KTQRIRFIFLATLRFDEELKIAIR 103
T +I ++ + F ELK ++
Sbjct: 207 GTHQIDWLVSGSALFSGELKTNLK 230
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 10 FYKDGVIFLTGGTGFMGKVLL 30
F+KD +I TG TG GK LL
Sbjct: 265 FFKDSIILATGATG-TGKTLL 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.146 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,588,634
Number of Sequences: 62578
Number of extensions: 133108
Number of successful extensions: 487
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 36
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)