RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy897
(125 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 71.1 bits (174), Expect = 7e-16
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 31/138 (22%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFA 74
+ LTG TGF+G+ L+ LLRR + LVR + R+EK D+ +
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGD--PELLR 132
Query: 75 NLVRLKTQRIRFI-----------------FL-----------ATLRFDEELKIAIRTNI 106
+ L R+ + L A + + N+
Sbjct: 133 HFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHE-LFGPNV 191
Query: 107 CATQTVVKLAKQCPHLRL 124
T ++++A
Sbjct: 192 AGTAELIRIALTTKLKPF 209
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 41.7 bits (98), Expect = 1e-05
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
+F+ G +G G+VLL +L + + ++ R E+ N DF
Sbjct: 21 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGR-----RKLTFDEEAYKNVNQEVVDFEK 74
Query: 76 LVRLKTQRIR----FIFLATLRFDEELKIAIRTNICATQTVVKLAKQCPHLRL 124
L + F L T R + +R + +LAK
Sbjct: 75 LDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHF 127
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 39.6 bits (93), Expect = 8e-05
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 23/129 (17%)
Query: 5 PTVEDFYKDGVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR-ERKGVSPQERIEKML 63
P ++ + I +TGGTG GK + +L + I + R E K Q +
Sbjct: 13 PNHQNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRDELK----QSEMAMEF 67
Query: 64 DNEGPIF-----KDFANLVRLKTQRIRFIF-LATLR-------FDEELKIAIRTNICATQ 110
++ F +D L + + A L+ E I+TNI
Sbjct: 68 NDPRMRFFIGDVRDLERLNYA-LEGVDICIHAAALKHVPIAEYNPLE---CIKTNIMGAS 123
Query: 111 TVVKLAKQC 119
V+ +
Sbjct: 124 NVINACLKN 132
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 37.7 bits (88), Expect = 3e-04
Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFA 74
+I +TG +G +G L+ L ++ I + + + LD +
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYG--KKNVIASDIVQRDTGGIKFIT-LD-----VSNRD 52
Query: 75 NLVRL-KTQRIRFIF-LATL---RFDEELKIAIRTNICATQTVVKLAKQCPHLRLF 125
+ R + I IF LA + + +++ +A + N+ T +++ AKQ ++
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVV 108
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 36.6 bits (85), Expect = 8e-04
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
+ +TG G +G+ L L H + LVR
Sbjct: 150 VAITGSRGLVGRALTAQLQTG---GHEVIQLVR 179
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 36.2 bits (83), Expect = 0.001
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEG 67
+ + G TGF+G+ + L YIL R + +I K L+++G
Sbjct: 13 VLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKALEDKG 61
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 35.4 bits (82), Expect = 0.002
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
+ L G TG G+ LLD +L P++ + R ++ + GP+ +
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPAR-----KALAEHPRLDNPVGPLAELLPQ 61
Query: 76 L 76
L
Sbjct: 62 L 62
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 35.3 bits (81), Expect = 0.002
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEK 61
I L G TG++G+ + L H ++LVRE S E+ +
Sbjct: 7 ILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQL 49
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 34.5 bits (79), Expect = 0.005
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSP 55
+ + GGTG++GK +++ + H Y+L R +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNI 43
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 33.8 bits (77), Expect = 0.009
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIE 60
I + GGTG++GK ++ L H +I R S ++
Sbjct: 7 IIIYGGTGYIGKFMVRASLS---FSHPTFIYARPLTPDSTPSSVQ 48
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 33.3 bits (76), Expect = 0.013
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLD 64
I + G TG +G+ ++ ++ + + Y LVR+ + E E+++D
Sbjct: 5 ILILGPTGAIGRHIVWASIK---AGNPTYALVRKTITAANPETKEELID 50
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 33.0 bits (75), Expect = 0.015
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
I + G TG G +L+ R H + +VR
Sbjct: 3 IGIIGATGRAGSRILEEAKNRG---HEVTAIVR 32
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 33.0 bits (76), Expect = 0.016
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
+ G TG +G + H + ++ R
Sbjct: 16 YAVLGATGLLGHHAARAIRAAG---HDLVLIHR 45
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 32.7 bits (75), Expect = 0.020
Identities = 14/105 (13%), Positives = 35/105 (33%), Gaps = 12/105 (11%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRER-KGVSPQERIEKMLDNEGPIFKDFA 74
+ +TG G +G+V+ + L + + P E + + D
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMA---EILRLADLSPLDPAGPNEECV-----QCDL-ADAN 56
Query: 75 NLVRLKTQRIRFIF-LATLRFDEELKIAIRTNICATQTVVKLAKQ 118
+ + I L + ++ + ++ NI + + A+
Sbjct: 57 AVNAM-VAGCDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARA 100
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 32.3 bits (73), Expect = 0.022
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
I + G TG G ++ RR H + +VR
Sbjct: 3 IAVLGATGRAGSAIVAEARRRG---HEVLAVVR 32
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 32.3 bits (73), Expect = 0.022
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIE 60
I + G G + + L TLL + I + R+ K P E I+
Sbjct: 8 ITILGAAGQIAQXLTATLLTY--TDMHITLYGRQLKTRIPPEIID 50
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 32.6 bits (74), Expect = 0.024
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRE 49
I + GGTG++G ++ L+ H Y+ R
Sbjct: 14 ILIFGGTGYIGNHMVKGSLK---LGHPTYVFTRP 44
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 31.6 bits (72), Expect = 0.037
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 20/109 (18%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR-ERKGVSPQERIEKMLDNEGPIFK--- 71
I L G +GF+G LL+ L R + +VR K E ++ + K
Sbjct: 7 IVLIGASGFVGSALLNEALNRG---FEVTAVVRHPEKIKIENEHLK--------VKKADV 55
Query: 72 -DFANLVR-LKTQRIRFIFLATLRFDEELKIAIRTNICATQTVVKLAKQ 118
+ K + ++ I T++ K+
Sbjct: 56 SSLDEVCEVCKGADAVISAFNPGWNNPDI---YDETIKVYLTIIDGVKK 101
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 31.5 bits (72), Expect = 0.047
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIE 60
IF+ G TG +GK LL +L + IY R+ + V ++
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTT---DYQIYAGARKVEQVPQYNNVK 44
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 31.1 bits (71), Expect = 0.056
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 10/104 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
+ +TG G +G + L H + + G E E+++ + D
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLA---HEVRLSDIVDLG--AAEAHEEIV--ACDL-ADAQA 56
Query: 76 LVRLKTQRIRFIF-LATLRFDEELKIAIRTNICATQTVVKLAKQ 118
+ L + I L + + ++ NI + + A+
Sbjct: 57 VHDL-VKDCDGIIHLGGVSVERPWNDILQANIIGAYNLYEAARN 99
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 30.7 bits (70), Expect = 0.089
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 14/117 (11%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYI--LVRERKGVSPQERIEKMLDNEGPIFKDF 73
I + G G +G L L + + ++ + + V E + DF
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYG-TENVIASDIRKLNTDVVNSGPFEVV------NALDF 57
Query: 74 ANLVRL-KTQRIRFIF----LATLRFDEELKIAIRTNICATQTVVKLAKQCPHLRLF 125
+ L + +I I+ L + ++ A N+ + V+ LAK ++F
Sbjct: 58 NQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 30.7 bits (70), Expect = 0.097
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 12 KDGVIFLTGGTGFMGKVLLDTLLRR 36
+ ++ +TG GF+ +++ LL
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEH 34
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A
{Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB:
1wvg_A*
Length = 357
Score = 30.2 bits (68), Expect = 0.13
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 9 DFYKDGVIFLTGGTGFMG 26
F++ +F+TG TGF G
Sbjct: 5 SFWQGKRVFVTGHTGFKG 22
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 30.5 bits (68), Expect = 0.14
Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 16/120 (13%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRR--FPSIHSIYILVR-ERKGVSPQERIEKMLDNEGPIFK 71
V + G TG +G L + L +Y + R R I +
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPIN-------YVQC 55
Query: 72 DFANLVRLKT-----QRIRFIFLATLRFDEELKIAIRTNICATQTVVK-LAKQCPHLRLF 125
D ++ + + +F T + N + V+ + CP+L+
Sbjct: 56 DISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHI 115
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 29.6 bits (67), Expect = 0.19
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
I + G TG G L ++ + + +LVR
Sbjct: 6 IAIFGATGQTGLTTLAQAVQA---GYEVTVLVR 35
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 29.6 bits (67), Expect = 0.20
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
+ + G G + + LL L + H +VR
Sbjct: 24 VLVVGANGKVARYLLSELKNKG---HEPVAMVR 53
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 29.6 bits (67), Expect = 0.24
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
+I +TG TG +G ++++L++ P+ I +VR
Sbjct: 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIVR 33
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 29.6 bits (67), Expect = 0.24
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 19/120 (15%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQ----ERIEKMLDNEGPIFK 71
I +TGG GF+G L P + +L + R + + G +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 72 -------DFANLVRLKTQRIRFIF-LA----TLRFDEELKIAIRTNICATQTVVKLAKQC 119
+ +L RL+ ++F A T ++EL ++TN A ++++A+
Sbjct: 72 VIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQEL--VMKTNYQAFLNLLEIARSK 129
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 29.6 bits (67), Expect = 0.25
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
I LTG TG +G + + + I +I VR
Sbjct: 3 IMLTGATGHLGTHITNQAIAN--HIDHFHIGVR 33
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.2 bits (66), Expect = 0.32
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
I +TG TG +G +++ LL++ P+ I +VR
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVR 34
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 29.0 bits (65), Expect = 0.35
Identities = 4/33 (12%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
+ + G G + + +++ L + + R
Sbjct: 26 VLILGAGGQIARHVINQLADKQT--IKQTLFAR 56
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 28.7 bits (64), Expect = 0.42
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 25/111 (22%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
I +TG GF+GK L L + H I+ + R+ + +E +E L
Sbjct: 3 IVITGAKGFVGKNLKADLTST--TDHHIFEVHRQ----TKEEELESALLK---------- 46
Query: 76 LVRLKTQRIRFIF-LATLRFDEELKIAIRTNICATQTVVKLAKQCPHLRLF 125
FI LA + E K N+ V+ + +
Sbjct: 47 --------ADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAI 89
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 28.7 bits (64), Expect = 0.42
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
+ +TG +G G+++ L LVR
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVR 38
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 28.5 bits (64), Expect = 0.51
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 18/116 (15%)
Query: 16 IFLTGGTGFMGKVLLDTLLRR----FPSIHSIYIL-VRE---RKGVSPQERIEKMLDNEG 67
I + G G +G+ L L++ + ++ V + G S D
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARA-AD--- 72
Query: 68 PIFKDFANLVRLKTQRIRFIF-LATL---RFDEELKIAIRTNICATQTVVKLAKQC 119
+L R IF LA + + + R N+ T+ + +
Sbjct: 73 --LSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIA 126
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 28.4 bits (64), Expect = 0.61
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 14 GVIFLTGGTGFMGKVLLDTLLRR 36
+ GGTGF+ +L+ LL++
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQK 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.74
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 38/132 (28%)
Query: 24 FMGKVLLDTLLRRFP-----SIHSIYILVRE---------RKGVSPQERIEKMLDNEG-- 67
+ K+ +L+ + P SI SIY+ ++ R V I K D++
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLI 465
Query: 68 PIFKD---FANLVR-LKTQR-------IRFIFLATLRFDEELKIAIR---TNICATQTVV 113
P + D ++++ LK R +FL RF L+ IR T A+ +++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRF---LEQKIRHDSTAWNASGSIL 521
Query: 114 KLAKQCPHLRLF 125
+Q L+ +
Sbjct: 522 NTLQQ---LKFY 530
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 27.6 bits (62), Expect = 0.93
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 12 KDGVIFLTGGTGFMGKVLLDTLLRR 36
+ + +TG +GF+G L+ LL R
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLER 28
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 27.6 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 16 IFLTGGTGFMGKVLLDTLLRR 36
+ +TGGTGF+G ++ +LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLLEN 24
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 27.2 bits (61), Expect = 1.5
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
I +TGG GF+G ++ L + I I ++ + G + + + + +DF
Sbjct: 2 IIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDG-TKFVNLVDLNIADYMDKEDFLI 58
Query: 76 LVRLK--TQRIRFIF-LA----TLRFDEELKIAIRTNICATQTVVKLAKQ 118
+ + IF T +D + + N ++ ++ +
Sbjct: 59 QIMAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLE 106
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 1.6
Identities = 27/136 (19%), Positives = 39/136 (28%), Gaps = 57/136 (41%)
Query: 20 GGTGFMG--KVLLDTLLRRFPS---------IHSIYILVR---------------ERKGV 53
GG G K+ L+TL R+ S +I R E+ GV
Sbjct: 635 GGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAEGIEKMGV 694
Query: 54 ---SPQERIEKMLDN--------------EGPIFKDF----ANLVRLKTQRIRFIFLATL 92
S +E M N + P+ D + LK F A L
Sbjct: 695 RTFSQKE----MAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELKE------FTAKL 744
Query: 93 RFDEELKIAIRTNICA 108
R + +R +
Sbjct: 745 RKELVETSEVRKAVSI 760
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 26.9 bits (60), Expect = 1.8
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 14/115 (12%)
Query: 12 KDGVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYI---LVRERKGVSPQERIEKMLDNEGP 68
+ +I +TGG GF+G ++ L + I I + L K V+ + ++
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDGTKFVNLVDLNIADYMDKED 102
Query: 69 IFKDFANLVRLKTQRIRFIF-LA----TLRFDEELKIAIRTNICATQTVVKLAKQ 118
+ + + IF T +D + + N ++ ++ +
Sbjct: 103 FLIQI--MAGEEFGDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLE 153
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 1.75A {Burkholderia thailandensis}
Length = 432
Score = 25.9 bits (57), Expect = 4.1
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 20 GGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSP--QERIEKMLDNEGPIFKDFANLV 77
GTG + LL L + I+ + +S + R + L + P +
Sbjct: 146 AGTGKLAAGLLTALAALGVELDEYAIV--D---LSGELRARQRETLGAQAPGLAARVRWL 200
Query: 78 RLKTQRIRFIFLA 90
+R + +
Sbjct: 201 DALPERFEGVVVG 213
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET:
BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Length = 267
Score = 25.8 bits (57), Expect = 5.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 11 YKDGVIFLTGGTGFMGKVLLD 31
K V+ +T GTG + D
Sbjct: 140 VKGTVLVITLGTGIGSAFIFD 160
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 25.6 bits (57), Expect = 5.3
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 26 GKVLLDTLLRRFPSIH 41
++ ++ +RF I
Sbjct: 327 ARIAIEEFSKRFRHIE 342
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 25.7 bits (57), Expect = 5.6
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 1 MEFYPTVED--FYKDGVIFLTGGTGFMGKVLLDTLLRR 36
M Y + + V +TG GF+G LL+TLL+
Sbjct: 13 MSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLKL 50
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer,
oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces
cerevisiae} SCOP: c.2.1.11 e.37.1.1
Length = 274
Score = 25.4 bits (55), Expect = 6.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 86 FIFLATLRFDEELKIAIRTN 105
F F A L + L+I I TN
Sbjct: 148 FYFGANLEIGDRLQILISTN 167
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 25.4 bits (56), Expect = 6.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 16 IFLTGGTGFMGKVLLDTLLRR 36
+ + G GF+G L + LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLRE 23
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 25.1 bits (55), Expect = 6.9
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 16 IFLTGGTGFMGKVLLDTLLRR 36
+ + G GF+G L +L
Sbjct: 27 VLILGVNGFIGHHLSKRILET 47
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 25.2 bits (56), Expect = 7.0
Identities = 2/16 (12%), Positives = 7/16 (43%)
Query: 26 GKVLLDTLLRRFPSIH 41
++ L+ ++F
Sbjct: 327 ARIALEEFAKKFRVKE 342
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 25.3 bits (56), Expect = 7.2
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 26 GKVLLDTLLRRFPSIH 41
V+L L R P
Sbjct: 375 VTVMLQEWLARIPEFR 390
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 25.3 bits (56), Expect = 7.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 26 GKVLLDTLLRRFPSIH 41
G+V+L L R+ +I
Sbjct: 371 GEVVLAALARKVAAIE 386
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 25.3 bits (56), Expect = 7.4
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 26 GKVLLDTLLRRFPSIH 41
+V L+ ++ RF +
Sbjct: 363 NRVALEEIIARFGRLT 378
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 25.3 bits (56), Expect = 7.5
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 26 GKVLLDTLLRRFPSIH 41
++ + +LRR P +
Sbjct: 350 LSLMTERVLRRLPDLR 365
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase,
translation; 3.40A {Homo sapiens} SCOP: a.173.1.1
d.218.1.4
Length = 448
Score = 25.2 bits (55), Expect = 7.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 63 LDNEGPIFKDFANLVRLKTQRIRFIFLATLRFDE 96
L +G +F F LK +++RF+ A R E
Sbjct: 174 LGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQE 207
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 25.0 bits (55), Expect = 7.8
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 26 GKVLLDTLLRRFPSIH 41
V L L R P
Sbjct: 368 IIVTLKEWLTRIPDFS 383
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 25.0 bits (55), Expect = 7.9
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 16 IFLTGGTGFMGKVLLDTLLRR 36
I +TG GF+ + L
Sbjct: 32 ISITGAGGFIASHIARRLKHE 52
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 25.2 bits (56), Expect = 7.9
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 26 GKVLLDTLLRRFPSIH 41
+ L+ +L F I
Sbjct: 305 ASIALNDILNHFKRIK 320
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein
B; 3D-structure, structural genomics, NPPSFA; HET: PEG;
1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Length = 178
Score = 24.5 bits (54), Expect = 8.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 15 VIFLTGGTGF 24
VI TGGTG+
Sbjct: 84 VIISTGGTGY 93
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 24.9 bits (55), Expect = 8.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 16 IFLTGGTGFMGKVLLDTLLRR 36
+F+TG G +G + + LL R
Sbjct: 24 VFITGICGQIGSHIAELLLER 44
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 25.0 bits (55), Expect = 9.1
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 26 GKVLLDTLLRRFPSIH 41
V L+ L+R P
Sbjct: 374 VIVTLEEWLKRIPEFS 389
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase
fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A
{Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A*
2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 25.0 bits (54), Expect = 9.3
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 20 GGTGFMGKVLLDTLLRRFPSIHSIYILV 47
GG G + +L + ++P + +V
Sbjct: 61 GGAGEIDLQILSKVQAQYPGVCINNEVV 88
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 24.9 bits (55), Expect = 9.8
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 26 GKVLLDTLLRRFPSIH 41
+V + L+R P
Sbjct: 351 ARVAITEFLKRIPEFS 366
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.146 0.429
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,014,663
Number of extensions: 115741
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 111
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.4 bits)