RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy897
(125 letters)
>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 312
Score = 42.0 bits (98), Expect = 4e-06
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
I +TGG GF+G L D L+ + + RK +E + +E +
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRK-----RNVEHWIGHENFELINHDV 58
Query: 76 LVRLKTQRIRFIFLATL----RFDEELKIAIRTNICATQTVVKLAKQC 119
+ L + + LA+ + ++TN T ++ LAK+
Sbjct: 59 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 106
>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
salmonicolor [TaxId: 5005]}
Length = 342
Score = 39.4 bits (90), Expect = 3e-05
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 12 KDGVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGP 68
+ ++ +TG GF+ +++ LL + + R S ++K D + P
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEH---GYKVRGTARS---ASKLANLQKRWDAKYP 60
>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia
pseudotuberculosis [TaxId: 633]}
Length = 356
Score = 39.4 bits (90), Expect = 4e-05
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 9 DFYKDGVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGP 68
F++ +F+TG TGF G L L ++ V ++ D
Sbjct: 4 SFWQGKRVFVTGHTGFKGGWLSLWLQTMG---ATVKGYSLTAPTVPSLFETARVADGMQS 60
Query: 69 IFKDFANLVRL 79
D + +L
Sbjct: 61 EIGDIRDQNKL 71
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 393
Score = 38.0 bits (86), Expect = 1e-04
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 3/72 (4%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
+ + GG G+ G L ++ + + LVR L I +
Sbjct: 4 VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLES---LTPIASIHDRISR 60
Query: 76 LVRLKTQRIRFI 87
L + I
Sbjct: 61 WKALTGKSIELY 72
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 37.5 bits (85), Expect = 2e-04
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGP 68
I L G TG++G+ + L H ++LVRE S E+ + + +
Sbjct: 6 ILLIGATGYIGRHVAKASLDLG---HPTFLLVRESTASSNSEKAQLLESFKAS 55
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 37.0 bits (85), Expect = 2e-04
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIF----- 70
I +TGG GF+G ++ +++ + + + E + + ++ F
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNT---QDTVVNIDKLTYAGNLESLSDISESNRYNFEHADI 59
Query: 71 KDFANLVRL-KTQRIRFIF-LATL----RFDEELKIAIRTNICATQTVVKLAKQC 119
D A + R+ + + + LA R I TNI T ++++A++
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY 114
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 232
Score = 36.7 bits (83), Expect = 3e-04
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 8 EDFY-KDGVIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
EDF ++ +F+ G +G G+VLL +L + + ++ R
Sbjct: 8 EDFRMQNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGR 48
>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 281
Score = 36.0 bits (81), Expect = 5e-04
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGP 68
I +TG G +G+ + L + + + ++ + K + + P
Sbjct: 4 ILITGANGQLGREIQKQLKGKN---VEVIPTDVQDLDITNVLAVNKFFNEKKP 53
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 205
Score = 35.8 bits (81), Expect = 6e-04
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
I + G TG G L ++ + + +LVR
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAG---YEVTVLVR 35
>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant
arborvitae (Thuja plicata) [TaxId: 3316]}
Length = 312
Score = 34.7 bits (78), Expect = 0.001
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQ 56
+ + GGTG++GK +++ + H Y+L R +
Sbjct: 6 VLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNID 43
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 34.8 bits (79), Expect = 0.001
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 11/121 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIY--ILVRERKGVSPQERIEKMLDNEGPIF--- 70
+ +TGG GF+G + LL I++ + + + + F
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 71 --KDFANLVRLKTQRIRFIFLATL----RFDEELKIAIRTNICATQTVVKLAKQCPHLRL 124
+D L R + A R + TN+ TQT+++ A R+
Sbjct: 63 DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRV 122
Query: 125 F 125
Sbjct: 123 V 123
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 34.6 bits (78), Expect = 0.002
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQE 57
I + G TG G L+ H + V KG+ +E
Sbjct: 5 TIAVVGATGRQGASLIRVAAAV---GHHVRAQVHSLKGLIAEE 44
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240
(T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 252
Score = 34.4 bits (77), Expect = 0.002
Identities = 5/45 (11%), Positives = 16/45 (35%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIE 60
+ +TG +G G+++ L + ++ + +
Sbjct: 6 VLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEAD 50
>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 341
Score = 34.6 bits (78), Expect = 0.002
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 10/121 (8%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYIL----------VRERKGVSPQERIEKMLD 64
V +TG GF+G LL+TLL+ + + VR + +
Sbjct: 18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 77
Query: 65 NEGPIFKDFANLVRLKTQRIRFIFLATLRFDEELKIAIRTNICATQTVVKLAKQCPHLRL 124
+ + + + + R + + TNI ++ A+
Sbjct: 78 DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 137
Query: 125 F 125
Sbjct: 138 T 138
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 34.6 bits (78), Expect = 0.002
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 10/103 (9%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFK---- 71
I +TGG GF+G + + P +H + G + +E +L + +
Sbjct: 5 IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG--NKANLEAILGDRVELVVGDIA 62
Query: 72 DFANLVRLKTQRIRFIFLATL----RFDEELKIAIRTNICATQ 110
D + +L + + A + I TN T
Sbjct: 63 DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTY 105
>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 212
Score = 33.2 bits (74), Expect = 0.004
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR 48
+ L G TG G+ LLD +L P++ + R
Sbjct: 5 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPAR 36
>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 347
Score = 33.5 bits (75), Expect = 0.004
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFK-DF 73
++ +TGG G++G + L+ L R+E + + P ++ D
Sbjct: 3 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTY--DSVARLEVLTKHHIPFYEVDL 60
Query: 74 ANLVRLK 80
+ L+
Sbjct: 61 CDRKGLE 67
>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase
(RmlD) {Salmonella enterica serovar typhimurium [TaxId:
90371]}
Length = 298
Score = 33.4 bits (74), Expect = 0.004
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKG-VSPQERIEKMLDNEGP 68
I L G TG +G L +L I + + +E G S + + + + P
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKEFCGDFSNPKGVAETVRKLRP 55
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 32.8 bits (73), Expect = 0.008
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVR-ERKGVSPQERIEKMLDNEGPIFK 71
+ +TGG G++G + LL I R G S E + ++ + G +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 32.6 bits (73), Expect = 0.008
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIF 70
+ +TGG+G++G LL+ H + IL + + L + P F
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNG---HDVIILDNLCNSKRSVLPVIERLGGKHPTF 54
>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 339
Score = 32.3 bits (72), Expect = 0.009
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFA 74
+ +TG TG G L + LL + + ++ L+R + +RI + + + K
Sbjct: 3 IALITGITGQDGSYLTEFLLGKG---YEVHGLIRRSSNFNT-QRINHIYIDPHNVNKALM 58
Query: 75 NLVR 78
L
Sbjct: 59 KLHY 62
>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId:
5691]}
Length = 383
Score = 32.1 bits (71), Expect = 0.012
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
+ + GG G++G + LLR HS+ I+ + +E +N +
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTN--HSVVIVDSLVGTHGKSDHVET-RENVARKLQQSDG 61
Query: 76 LVRLKTQRIRFIFLATLRFDEELKIAIRTNICATQTVVKLAKQCPH 121
R + + +R ++ L + V A
Sbjct: 62 PKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVG 107
>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose
epimerase/reductase (GDP-fucose synthetase) {Escherichia
coli [TaxId: 562]}
Length = 315
Score = 32.2 bits (72), Expect = 0.012
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 12/110 (10%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
+F+ G G +G + L +R + + R+ + + +E D
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQR--GDVELVLRTRDELNLLDSRAVHDFFASERI---DQVY 59
Query: 76 LVRLKTQRIRFIFLATLRFDEELKIAIRTNICATQTVVKLAKQCPHLRLF 125
L K I F I N+ ++ A Q +L
Sbjct: 60 LAAAKVGGIVANNTYPADF-------IYQNMMIESNIIHAAHQNDVNKLL 102
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 31.9 bits (71), Expect = 0.013
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFA 74
V +TG TG G L + LL + + ++ +VR + RIE + N +
Sbjct: 3 VALITGITGQDGSYLAEFLLEKG---YEVHGIVRRSSSFNT-GRIEHLYKNPQAHIEGNM 58
Query: 75 NLVR 78
L
Sbjct: 59 KLHY 62
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 31.7 bits (71), Expect = 0.014
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 18/120 (15%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQ--ERIEKMLDNEGPIFK- 71
V +TG TG G L + LL + + ++ + R + + + I + P F
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKG---YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHL 59
Query: 72 ------DFANLVR-LKTQRIRFIFLATL-----RFDEELKIAIRTNICATQTVVKLAKQC 119
D +NL R L+ + ++ E + + T +++ +
Sbjct: 60 HYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL 119
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 31.6 bits (70), Expect = 0.019
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIF 70
+ +TGG GF+G L L + + L R+ + + + F
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA----TDNLHWLSSLGNFEF 53
>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA
(PrmI) {Escherichia coli [TaxId: 562]}
Length = 342
Score = 31.5 bits (69), Expect = 0.020
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
+ + G GF+G L + LLR + +Y L +S EG I +
Sbjct: 3 VLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRFLNHPHFHFVEGDI-SIHSE 59
Query: 76 LVRLKTQRI 84
+ ++
Sbjct: 60 WIEYHVKKC 68
>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st
ketoreductase module {Saccharopolyspora erythraea
[TaxId: 1836]}
Length = 259
Score = 31.1 bits (69), Expect = 0.021
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 6 TVEDFYKDGVIFLTGGTGFMGKVLLDTLLRR 36
T +++ G + +TGGTG +G + L RR
Sbjct: 2 TDDEWKPTGTVLVTGGTGGVGGQIARWLARR 32
>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase
{Escherichia coli [TaxId: 562]}
Length = 307
Score = 31.2 bits (68), Expect = 0.023
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 16 IFLTGGTGFMGKVLLDTLLRR-FPSIHSIYILVRERKGVSPQE-RIEKMLDNEGPIFKDF 73
I +TGG GF+G ++ L + I + L K V+ + I +D E + +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIM 61
Query: 74 AN 75
A
Sbjct: 62 AG 63
>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 321
Score = 31.1 bits (69), Expect = 0.026
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIF 70
+TG TG G L LL + + ++ LV R+ + R+ ++ +
Sbjct: 3 ALVTGITGQDGAYLAKLLLEKG---YRVHGLVA-RRSSDTRWRLRELGIEGDIQY 53
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 30.3 bits (67), Expect = 0.049
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 16 IFLTGGTGFMGKVLLDTLLRR 36
I +TG GF+ + L
Sbjct: 18 ISITGAGGFIASHIARRLKHE 38
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 146
Score = 27.0 bits (59), Expect = 0.43
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 20 GGTGFMGKVLLDTLL--RRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
G G +G VL+ ++ R F +I ++ + +P + +
Sbjct: 8 GWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKA 65
>d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 333
Score = 27.0 bits (58), Expect = 0.75
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 57 ERIEKMLDNEGPIFKDFANLVRLKTQ 82
RI + ++ ++DFA L R Q
Sbjct: 20 GRIREAVERGERRYRDFAVLYRTNAQ 45
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase
{Escherichia coli [TaxId: 562]}
Length = 162
Score = 25.6 bits (55), Expect = 1.5
Identities = 12/100 (12%), Positives = 24/100 (24%), Gaps = 1/100 (1%)
Query: 16 IFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFAN 75
+ + G G MG+ L+ L + L RE + + E + + +
Sbjct: 7 VAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSL 65
Query: 76 LVRLKTQRIRFIFLATLRFDEELKIAIRTNICATQTVVKL 115
+ F L +
Sbjct: 66 DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGF 105
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 25.4 bits (55), Expect = 1.9
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 21 GTGFMGKVLLDTLLRRFPSIHSIYILVRERK 51
G+G +G L+ +LR + ++ +
Sbjct: 11 GSGNIGTDLMIKVLRNAKYLEMGAMVGIDAA 41
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 147
Score = 24.6 bits (53), Expect = 2.8
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 20 GGTGFMGKVLLDTLL--RRFPSIHSIYILVRERKGVSPQERIEKML 63
G G +G VL+ ++ R F I + GV +
Sbjct: 7 GWRGMVGSVLMQRMVEERDFDLIE-PVFFSTSQIGVPAPNFGKDAG 51
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId:
408]}
Length = 191
Score = 24.9 bits (53), Expect = 3.1
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 12 KDGVIFLTGGTGFMGKVLLDTLLRRFPSIHSIY 44
K + GTG +G L +
Sbjct: 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCG 54
>d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 333
Score = 24.4 bits (51), Expect = 5.0
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 57 ERIEKMLDNEGPIFKDFANLVRLKTQ 82
+ +KD+A L R Q
Sbjct: 22 GELIAHHFVNKTQYKDYAILYRGNHQ 47
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 24.4 bits (51), Expect = 5.5
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 27 KVLLDTLLRRFPSIH 41
K+ + LL + S+
Sbjct: 388 KIFFEELLPKLKSVE 402
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 24.4 bits (51), Expect = 5.9
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 27 KVLLDTLLRRFPSIH 41
++L+D +L R P +
Sbjct: 357 ELLVDAVLDRVPGLK 371
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 24.3 bits (51), Expect = 5.9
Identities = 5/15 (33%), Positives = 5/15 (33%)
Query: 27 KVLLDTLLRRFPSIH 41
V L L R P
Sbjct: 358 IVTLKEWLTRIPDFS 372
>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 24.1 bits (51), Expect = 6.1
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 15 VIFLTGGTGFMGKVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEG 67
V+ +TG + +G L L +Y +R+ K + L
Sbjct: 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPP 56
>d1jyoe_ d.184.1.2 (E:) Virulence effector SptP domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 102
Score = 23.4 bits (50), Expect = 6.2
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 53 VSPQERIEKMLDNEG--PIFK------DFANLVRLKTQRIRFIFLATL--RFDEE----- 97
V+P++ K+L G P+FK +R++ Q+I FL L ++ E
Sbjct: 5 VAPEKFSSKVLTWLGKMPLFKNTEVVQKHTENIRVQDQKILQTFLHALTEKYGETAVNDA 64
Query: 98 -LKIAIRTNICATQTVVKLAKQC 119
L I N TQ + +C
Sbjct: 65 LLMSRINMNKPLTQRLAVQITEC 87
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 24.0 bits (50), Expect = 6.4
Identities = 3/15 (20%), Positives = 10/15 (66%)
Query: 27 KVLLDTLLRRFPSIH 41
++ ++ LL++ P +
Sbjct: 355 QIGIEALLKKMPGVD 369
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 24.0 bits (50), Expect = 6.4
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 27 KVLLDTLLRRFPSIH 41
+ TL ++FP +
Sbjct: 359 TTVFSTLYQKFPDLK 373
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 24.3 bits (51), Expect = 6.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 27 KVLLDTLLRRFPSIH 41
++ TL RRFP +
Sbjct: 364 RMAYQTLWRRFPGLR 378
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator
RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 77
Score = 23.2 bits (50), Expect = 6.8
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 32 TLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEG 67
L F S H + + R G +R +LD EG
Sbjct: 42 VLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEG 77
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 24.0 bits (50), Expect = 6.8
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 25 MGKVLLDTLLRRFPSIH 41
+ L++L RFP +
Sbjct: 357 EVTLALESLFGRFPDLR 373
>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 23.6 bits (51), Expect = 6.8
Identities = 9/40 (22%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 56 QERIEKMLDNEGPIFKDF--ANLVRLKTQRIRFIFLATLR 93
E++E M +N ++ ++ +++ +RIR++ + LR
Sbjct: 35 MEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLR 74
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 24.0 bits (50), Expect = 7.0
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 27 KVLLDTLLRRFPSIH 41
++ + T+ RRFP +
Sbjct: 361 EIAVGTIFRRFPEMK 375
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 23.9 bits (51), Expect = 7.3
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 1/100 (1%)
Query: 27 KVLLDTLLRRFPSIHSIYILVRERKGVSPQERIEKMLDNEGPIFKDFANLVRLKTQRI-R 85
K ++ L S + +EK L PI + F N +K R
Sbjct: 109 KKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSR 168
Query: 86 FIFLATLRFDEELKIAIRTNICATQTVVKLAKQCPHLRLF 125
F + FD I + +Q R F
Sbjct: 169 FGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTF 208
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 24.0 bits (50), Expect = 7.5
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 27 KVLLDTLLRRFPSI 40
V L L RFP +
Sbjct: 359 GVALPALYARFPHL 372
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 23.6 bits (49), Expect = 8.7
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 27 KVLLDTLLRRFPSI 40
+ + L RRFP++
Sbjct: 354 RTVFTELWRRFPAL 367
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 23.6 bits (49), Expect = 8.7
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 27 KVLLDTLLRRFPSIH 41
+V L L RFP++
Sbjct: 360 EVALRALFGRFPALS 374
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.330 0.146 0.429
Gapped
Lambda K H
0.267 0.0369 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 495,460
Number of extensions: 22437
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 57
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.3 bits)