BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8970
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
Adp Ribose
Length = 355
Score = 244 bits (622), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 152/216 (70%), Gaps = 3/216 (1%)
Query: 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
S NYA GLSPY +KGK GL E FD E+ ++K+ L+ + ++ VV HTGAGIST++GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLR 121
PDFRGP+GVWT+E++G+ PK + +F+ A PT THMA+++L G + ++VSQN+DGLH+R
Sbjct: 62 PDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVR 121
Query: 122 SGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY---RGFRPCRGTL 178
SG R LAELHGNM+V++C KC+ Q+VR + ++G K C RG R CRG L
Sbjct: 122 SGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGEL 181
Query: 179 HDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCL 214
DTILDWE +LP +D+ + D S ADLSI LG L
Sbjct: 182 RDTILDWEDSLPDRDLALADEASRNADLSITLGTSL 217
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 243 bits (621), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 113/216 (52%), Positives = 152/216 (70%), Gaps = 3/216 (1%)
Query: 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
S NYA GLSPY +KGK GL E FD E+ ++K+ L+ + ++ VV HTGAGIST++GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLR 121
PDFRGP+GVWT+E++G+ PK + +F+ A PT THMA+++L G + ++VSQN+DGLH+R
Sbjct: 62 PDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVR 121
Query: 122 SGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY---RGFRPCRGTL 178
SG R LAELHGNM+V++C KC+ Q+VR + ++G K C RG R CRG L
Sbjct: 122 SGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGEL 181
Query: 179 HDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCL 214
DTILDWE +LP +D+ + D S ADLSI LG L
Sbjct: 182 RDTILDWEDSLPDRDLALADEASRNADLSITLGTSL 217
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 99/206 (48%), Gaps = 34/206 (16%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-------------------- 72
K+K + +++++ V TGAGIST +GIPDFRGPNG++
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 73 -LEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAE 131
K+GI P + A P + H+ + +L +G + V++QNID LH R+G K + E
Sbjct: 62 RFAKEGIFPMLQ-----AKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIE 114
Query: 132 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQ 191
LHGN+ C +CE+++ + + ++ + C + I+ + NLPQ
Sbjct: 115 LHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLC------DDCNSLIRPNIVFFGENLPQ 168
Query: 192 KDINMGDYNSSIADLSICLGKCLLSF 217
+ SS A L I LG L+ +
Sbjct: 169 DALREAIGLSSRASLMIVLGSSLVVY 194
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 99/206 (48%), Gaps = 34/206 (16%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-------------------- 72
K+K + +++++ V TGAGIST +GIPDFRGPNG++
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 73 -LEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAE 131
K+GI P + A P + H+ + +L +G + V++QNID LH R+G K + E
Sbjct: 62 RFAKEGIFPMLQ-----AKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIE 114
Query: 132 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQ 191
L+GN+ C +CE+++ + + ++ + C + I+ + NLPQ
Sbjct: 115 LYGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLC------DDCNSLIRPNIVFFGENLPQ 168
Query: 192 KDINMGDYNSSIADLSICLGKCLLSF 217
+ SS A L I LG L+ +
Sbjct: 169 DALREAIGLSSRASLMIVLGSSLVVY 194
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 34/206 (16%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-------------------- 72
K+K + +++++ V TGAGIST +GIPDFRGPNG++
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 73 -LEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAE 131
K+GI P + A P + H+ + +L +G + V++QNID LH R+G K + E
Sbjct: 62 RFAKEGIFPMLQ-----AKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG--SKKVIE 114
Query: 132 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQ 191
L GN+ C +CE+++ + + ++ + C + I+ + NLPQ
Sbjct: 115 LAGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLC------DDCNSLIRPNIVFFGENLPQ 168
Query: 192 KDINMGDYNSSIADLSICLGKCLLSF 217
+ SS A L I LG L+ +
Sbjct: 169 DALREAIGLSSRASLMIVLGSSLVVY 194
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 69/135 (51%), Gaps = 18/135 (13%)
Query: 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-------TLEKKGIK--P 80
+ +I+ +E + K+KH V+ TGAGIS +GIP FRG +G+W G K P
Sbjct: 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNP 60
Query: 81 KVNISFDD-------AVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELH 133
+ F A P H AI EL G V V++QNID LH R+G SR+ L ELH
Sbjct: 61 RAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG-SRRVL-ELH 118
Query: 134 GNMYVDQCNKCERQF 148
G+M C C +
Sbjct: 119 GSMDKLDCLDCHETY 133
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 29/192 (15%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFDDAV------------- 90
+ VV+ GAGIST +GIPDFR P +G+++ ++ P F+
Sbjct: 17 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 76
Query: 91 --------PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
P VTH + L ++G + + +QNIDGL SG+ L E HG C
Sbjct: 77 ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCT 136
Query: 143 KCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSS 202
C+R F + V + CP C G + I+ + LPQ+ + + +
Sbjct: 137 VCQRPFPGEDIRADVMADRVP-RCPV-----CTGVVKPDIVFFGEPLPQRFL-LHVVDFP 189
Query: 203 IADLSICLGKCL 214
+ADL + LG L
Sbjct: 190 MADLLLILGTSL 201
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2
Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD---------------- 87
+ VV+ GAGIST +GIPDFR P +G+++ ++ P F+
Sbjct: 24 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 83
Query: 88 -----DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
+ P VTH + L ++G + + +QNIDGL SG+ L E HG C
Sbjct: 84 ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCT 143
Query: 143 KCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSS 202
C+R F + V + CP C G + I+ + LPQ+ + + +
Sbjct: 144 VCQRPFPGEDIRADVMADRVP-RCPV-----CTGVVKPDIVFFGEPLPQRFL-LHVVDFP 196
Query: 203 IADLSICLGKCL 214
+ADL + LG L
Sbjct: 197 MADLLLILGTSL 208
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 29/192 (15%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFDDAV------------- 90
+ VV+ GAGIST +GIPDFR P +G+++ ++ P F+
Sbjct: 23 QRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAK 82
Query: 91 --------PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
P VTH + L ++G + + +QNIDGL SG+ L E HG C
Sbjct: 83 ELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCT 142
Query: 143 KCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSS 202
C+R F + V + CP C G + I+ + LPQ+ + + +
Sbjct: 143 VCQRPFPGEDIRADVMADRVP-RCPV-----CTGVVKPDIVFFGEPLPQRFL-LHVVDFP 195
Query: 203 IADLSICLGKCL 214
+ADL + LG L
Sbjct: 196 MADLLLILGTSL 207
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 21/131 (16%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 82
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 83 NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
F+ A P H A EL G + +++QN+DGLH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDGLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 143 KCERQFVRKSA 153
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 30/147 (20%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKG 77
G A S DF K + KAKH+V+ +GAG+S +G+P FRG G W + +
Sbjct: 1 GSARPSSSXADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQD 53
Query: 78 IKPKVNISFDDA----------------VPTVTHMAILE----LVNRGKVHYVVSQNIDG 117
+ + + + + P H AI E L +G+ V++QNID
Sbjct: 54 LATPLAFAHNPSRVWEFYHYRREVXGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDE 113
Query: 118 LHLRSGLSRKYLAELHGNMYVDQCNKC 144
LH ++G K L E+HG+++ +C C
Sbjct: 114 LHRKAGT--KNLLEIHGSLFKTRCTSC 138
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 30/147 (20%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKG 77
G A S DF K + KAKH+V+ +GAG+S +G+P FRG G W + +
Sbjct: 1 GSARPSSSMADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQD 53
Query: 78 IKPKVNISFDDA----------------VPTVTHMAILE----LVNRGKVHYVVSQNIDG 117
+ + + + + P H AI E L +G+ V++QNID
Sbjct: 54 LATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDE 113
Query: 118 LHLRSGLSRKYLAELHGNMYVDQCNKC 144
LH ++G K L E+HG+++ +C C
Sbjct: 114 LHRKAGT--KNLLEIHGSLFKTRCTSC 138
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 82
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 83 NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
F+ A P H A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 143 KCERQFVRKSA 153
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 82
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 83 NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
F+ A P H A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 143 KCERQFVRKSA 153
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 82
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 20 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 79
Query: 83 NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
F+ A P H A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 80 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 136
Query: 143 KCERQFVRKSA 153
C F +SA
Sbjct: 137 SCNNSFEVESA 147
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 21 AETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIK 79
A S DF K + KAKH+V+ +GAG+S +G+P FRG G W + + +
Sbjct: 5 ARPSSSMADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLA 57
Query: 80 PKVNISFDDA----------------VPTVTHMAILE----LVNRGKVHYVVSQNIDGLH 119
+ + + + P H AI E L +G+ V++QNID LH
Sbjct: 58 TPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 117
Query: 120 LRSGLSRKYLAELHGNMYVDQCNKC 144
++G K L E+HG+++ +C C
Sbjct: 118 RKAGT--KNLLEIHGSLFKTRCTSC 140
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 30/141 (21%)
Query: 25 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIKPKVN 83
S DF K + KAKH+V+ +GAG+S +G+P FRG G W + + + +
Sbjct: 3 SSMADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLA 55
Query: 84 ISFDDA----------------VPTVTHMAILE----LVNRGKVHYVVSQNIDGLHLRSG 123
+ + + P H AI E L +G+ V++QNID LH ++G
Sbjct: 56 FAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAG 115
Query: 124 LSRKYLAELHGNMYVDQCNKC 144
K L E+HG+++ +C C
Sbjct: 116 T--KNLLEIHGSLFKTRCTSC 134
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 21 AETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIK 79
A S DF K + KAKH+V+ +GAG+S +G+P FRG G W + + +
Sbjct: 7 ARPSSSMADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLA 59
Query: 80 PKVNISFDDA----------------VPTVTHMAILE----LVNRGKVHYVVSQNIDGLH 119
+ + + + P H AI E L +G+ V++QNID LH
Sbjct: 60 TPLAFAHNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELH 119
Query: 120 LRSGLSRKYLAELHGNMYVDQCNKC 144
++G K L E+HG+++ +C C
Sbjct: 120 RKAGT--KNLLEIHGSLFKTRCTSC 142
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 82
I ++K++V TGAG++ +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVAAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 83 NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
F+ A P H A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 143 KCERQFVRKSA 153
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 20/150 (13%)
Query: 15 KGKLG-LAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPN----- 68
+G +G L +F K+ ++ L++ I K KHVV TG+G S + IP FRG +
Sbjct: 15 RGSMGNLMISFLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWS 74
Query: 69 -----------GVWTLEKKGIKPKVNISFDDAVPTVT-HMAILELVNRGKVHYVVSQNID 116
G W +K + +IS D + H+A+ L + G + VV+QN+D
Sbjct: 75 KYDPRIYGTIWGFWKYPEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVD 134
Query: 117 GLHLRSGLSRKYLAELHGNMYVDQCNKCER 146
GLH SG ++ + LHGN++ C C +
Sbjct: 135 GLHEASGNTK--VISLHGNVFEAVCCTCNK 162
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 21/131 (16%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------------KGIKPKV 82
I ++K++V TGAG+S +GIP FRG +G+W + K ++
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRM 68
Query: 83 NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
F+ A P + A EL G + +++QN+D LH R+G SR + LHG++ V +C
Sbjct: 69 EKVFN-AQPNKANQAFAELERLGVLKCLITQNVDDLHERAG-SRNVI-HLHGSLRVVRCT 125
Query: 143 KCERQFVRKSA 153
C F +SA
Sbjct: 126 SCNNSFEVESA 136
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 19/127 (14%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPN----------------GVWTLEKKGIKP 80
L++ I K KHVV TG+G S + IP FRG + G W +K +
Sbjct: 13 LAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIWEV 72
Query: 81 KVNISFDDAVPTVT-HMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 139
+IS D + H+A+ L + G + VV+QN+DGLH SG ++ + LHGN++
Sbjct: 73 IRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGNTK--VISLHGNVFEA 130
Query: 140 QCNKCER 146
C C +
Sbjct: 131 VCCTCNK 137
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 42 DKAKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEKKGIKPKVNISFDDAV---------- 90
++ + V+ GAGISTSAGIPDFR P+ G++ +K P F+ +
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFA 100
Query: 91 -----------PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 139
PT+ H + L ++G + +QNID L +GL ++ L E HG Y
Sbjct: 101 LAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTS 160
Query: 140 QC 141
C
Sbjct: 161 HC 162
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 42 DKAKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEKKGIKPKVNISFDDAV---------- 90
++ + V+ GAGISTSAGIPDFR P+ G++ +K P F+ +
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFA 100
Query: 91 -----------PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 139
PT+ H + L ++G + +QNID L +GL ++ L E HG Y
Sbjct: 101 LAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTS 160
Query: 140 QC 141
C
Sbjct: 161 HC 162
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 44 AKHVVLHTGAGISTSAGIPDFRGPNGVWT-LEKKGI--------------KPKV--NISF 86
A+ +++ TGAG+STS GIPDFR G ++ ++ G+ P V NI+
Sbjct: 46 ARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFXHDPSVFYNIAN 105
Query: 87 DDAVP----TVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
P + H I L +GK+ +QNID L +G+S L + HG+ C
Sbjct: 106 XVLPPEKIYSPLHSFIKXLQXKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCV 165
Query: 143 KCERQFVRKSATNSVGQKNLNIS-CPY 168
C + N + +NL + CPY
Sbjct: 166 TCHWNLPGERIFNKI--RNLELPLCPY 190
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 34/203 (16%)
Query: 39 EWIDKAKHVVLHTGAGISTSAGIPDFRG-----------------PNGVWTLEKKGIKPK 81
+ + + K +++ TGAG+S S GIPDFR P ++ +E P+
Sbjct: 11 KLLQECKKIIVLTGAGVSVSCGIPDFRSRDGIYARLAVDFPDLPDPQAMFDIEYFRKDPR 70
Query: 82 VNISFDDAV------PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGN 135
F + P++ H I GK+ +QNID L +G+ R + + HG+
Sbjct: 71 PFFKFAKEIYPGQFQPSLCHKFIALSDKEGKLLRNYTQNIDTLEQVAGIQR--IIQCHGS 128
Query: 136 MYVDQCNKCERQF----VRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQ 191
C C+ + VR N V + CP + I+ + NLP+
Sbjct: 129 FATASCLICKYKVDCEAVRGDIFNQVVPR-----CPRCPADEPLAIMKPEIVFFGENLPE 183
Query: 192 KDINMGDYNSSIADLSICLGKCL 214
+ Y+ DL I +G L
Sbjct: 184 QFHRAMKYDKDEVDLLIVIGSSL 206
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 24/147 (16%)
Query: 44 AKHVVLHTGAGISTSAGIPDFRGPNGVWT-LEKKGI-KPK----VNISFDDA-------- 89
A+ +++ TGAG+STS GIPDFR G ++ ++ G+ P+ NI D
Sbjct: 184 ARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIAN 243
Query: 90 -------VPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
+ + H I L +GK+ +QNID L +G+S L + HG+ C
Sbjct: 244 MVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCV 303
Query: 143 KCERQFVRKSATNSVGQKNLNIS-CPY 168
C + N + +NL + CPY
Sbjct: 304 TCHWNLPGERIFNKI--RNLELPLCPY 328
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 47 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 99
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 30 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 89
Query: 100 ELVN--RGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 144
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 90 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 149
Query: 145 ERQF 148
+ +
Sbjct: 150 GKVY 153
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 47 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 99
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 23 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82
Query: 100 ELVN--RGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 144
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 142
Query: 145 ERQF 148
+ +
Sbjct: 143 GKVY 146
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 47 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 99
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 41 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 100
Query: 100 ELVN--RGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 144
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 101 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 160
Query: 145 ERQF 148
+ +
Sbjct: 161 GKVY 164
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 47 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 99
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 33 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 92
Query: 100 ELVN--RGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 144
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 93 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 152
Query: 145 ERQF 148
+ +
Sbjct: 153 GKVY 156
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 47 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 99
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 31 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 90
Query: 100 ELVN--RGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 144
N K HY V +QNID L ++G+ + E HG+ C C
Sbjct: 91 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGC 150
Query: 145 ERQF 148
+ +
Sbjct: 151 GKVY 154
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2
Homolog Protein Deacetylase From Eschericia Coli
Length = 235
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 22/117 (18%)
Query: 47 VVLHTGAGISTSAGIPDFRGPNGVW---------TLEKKGIKPKVNISFDDA-------- 89
V++ TGAGIS +GI FR +G+W T E P++ +F +A
Sbjct: 4 VLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP 63
Query: 90 --VPTVTHMAILELVNR-GKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK 143
P H+A+ +L + G +V+QNID LH R+G + + +HG + +C++
Sbjct: 64 EIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTN--VIHMHGELLKVRCSQ 118
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 47 VVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD------DAVPTVTHMAIL 99
V+ GAGISTS GIPDFR P G++ + P FD D +P T L
Sbjct: 41 VIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 100
Query: 100 ELVN--RGKVHY-------------VVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKC 144
N K HY V +QN D L ++G+ + E HG+ C C
Sbjct: 101 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNFDTLERQAGVKDDLIIEAHGSFAHCHCIGC 160
Query: 145 ERQF 148
+ +
Sbjct: 161 GKVY 164
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 85 SFDDAVPTVTHMAILELVNR 104
S +DA PT TH+A+L L+N+
Sbjct: 140 STNDAFPTATHIAVLSLLNQ 159
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 85 SFDDAVPTVTHMAILELVNR 104
S +DA PT TH+A+L L+N+
Sbjct: 140 STNDAFPTATHIAVLSLLNQ 159
>pdb|2HV2|A Chain A, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|B Chain B, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|C Chain C, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|D Chain D, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|E Chain E, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
pdb|2HV2|F Chain F, Crystal Structure Of Conserved Protein Of Unknown Function
From Enterococcus Faecalis V583 At 2.4 A Resolution,
Probable N- Acyltransferase
Length = 400
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 46 HVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGI----KPKVNISF 86
H V + AGI A P++RG G+ + K+ + K KV +S+
Sbjct: 72 HGVRYPXAGIGYVASYPEYRGEGGISAIXKEXLADLAKQKVALSY 116
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 6 AEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHV 47
A L P + K+GLA+ +ED D+ I + E D A+ +
Sbjct: 441 ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,952,826
Number of Sequences: 62578
Number of extensions: 327880
Number of successful extensions: 764
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 50
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)