Query psy8970
Match_columns 258
No_of_seqs 194 out of 1292
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 00:22:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905|consensus 100.0 7.6E-66 1.6E-70 454.1 11.7 255 1-256 12-288 (353)
2 cd01410 SIRT7 SIRT7: Eukaryoti 100.0 2.9E-61 6.3E-66 417.2 17.0 188 45-237 1-205 (206)
3 cd01409 SIRT4 SIRT4: Eukaryoti 100.0 3.4E-61 7.3E-66 430.1 16.4 203 37-241 1-258 (260)
4 PTZ00409 Sir2 (Silent Informat 100.0 6.4E-60 1.4E-64 423.5 15.7 206 29-242 13-255 (271)
5 PRK14138 NAD-dependent deacety 100.0 1.2E-58 2.5E-63 410.4 16.4 200 35-242 2-233 (244)
6 cd01408 SIRT1 SIRT1: Eukaryoti 100.0 1.2E-58 2.6E-63 408.3 15.5 191 45-241 1-230 (235)
7 COG0846 SIR2 NAD-dependent pro 100.0 1.4E-58 3E-63 409.0 14.4 199 34-240 2-235 (250)
8 cd01413 SIR2_Af2 SIR2_Af2: Arc 100.0 6.8E-58 1.5E-62 400.4 15.2 188 41-237 1-221 (222)
9 PRK05333 NAD-dependent deacety 100.0 1.5E-56 3.3E-61 405.1 17.6 210 31-242 6-269 (285)
10 cd01411 SIR2H SIR2H: Uncharact 100.0 3.4E-56 7.3E-61 390.4 15.3 189 37-241 1-223 (225)
11 PRK00481 NAD-dependent deacety 100.0 6.3E-56 1.4E-60 392.5 16.9 198 33-242 2-232 (242)
12 PTZ00410 NAD-dependent SIR2; P 100.0 1.3E-55 2.7E-60 405.1 15.3 190 31-227 14-244 (349)
13 cd01407 SIR2-fam SIR2 family o 100.0 4.1E-55 9E-60 381.7 15.9 184 45-237 1-217 (218)
14 PTZ00408 NAD-dependent deacety 100.0 1.1E-54 2.4E-59 384.2 13.4 184 42-240 2-225 (242)
15 cd01412 SIRT5_Af1_CobB SIRT5_A 100.0 3.2E-53 6.9E-58 371.1 14.4 185 45-241 1-218 (224)
16 KOG2683|consensus 100.0 2.3E-51 4.9E-56 352.6 13.0 213 25-241 26-300 (305)
17 cd00296 SIR2 SIR2 superfamily 100.0 7.6E-50 1.6E-54 348.0 15.2 184 45-237 1-221 (222)
18 PF02146 SIR2: Sir2 family; I 100.0 2.5E-51 5.3E-56 347.3 5.6 157 52-217 1-177 (178)
19 KOG2684|consensus 100.0 2E-49 4.3E-54 363.9 11.4 220 32-253 76-347 (412)
20 KOG2682|consensus 100.0 2.1E-47 4.6E-52 328.4 8.3 211 31-247 21-275 (314)
21 cd01406 SIR2-like Sir2-like: P 99.0 2E-10 4.2E-15 101.5 4.0 78 45-122 1-112 (242)
22 smart00834 CxxC_CXXC_SSSS Puta 81.2 1.1 2.4E-05 28.0 1.8 34 137-179 4-37 (41)
23 PF09723 Zn-ribbon_8: Zinc rib 78.1 1.6 3.4E-05 28.0 1.7 35 136-179 3-38 (42)
24 TIGR00595 priA primosomal prot 76.8 15 0.00032 36.2 8.8 25 193-217 300-324 (505)
25 PF00205 TPP_enzyme_M: Thiamin 74.2 2.3 4.9E-05 33.7 2.1 25 34-58 1-25 (137)
26 PF00205 TPP_enzyme_M: Thiamin 73.2 2.6 5.7E-05 33.4 2.2 20 196-215 70-89 (137)
27 PRK05580 primosome assembly pr 69.2 24 0.00052 36.1 8.5 24 193-216 468-491 (679)
28 TIGR00373 conserved hypothetic 68.8 3.5 7.7E-05 34.2 2.1 33 136-179 107-139 (158)
29 COG3961 Pyruvate decarboxylase 68.4 10 0.00022 37.5 5.3 52 16-67 181-244 (557)
30 PRK06266 transcription initiat 68.0 3.4 7.4E-05 35.0 1.9 33 137-180 116-148 (178)
31 TIGR02098 MJ0042_CXXC MJ0042 f 67.2 4.1 8.9E-05 25.1 1.7 34 139-179 3-36 (38)
32 PRK12496 hypothetical protein; 66.0 3.7 7.9E-05 34.4 1.6 29 137-179 126-154 (164)
33 PRK14873 primosome assembly pr 65.6 22 0.00048 36.3 7.4 47 91-147 355-401 (665)
34 PF05191 ADK_lid: Adenylate ki 65.3 5.4 0.00012 24.8 1.9 30 139-178 2-31 (36)
35 TIGR02605 CxxC_CxxC_SSSS putat 64.9 4.8 0.0001 26.6 1.8 31 137-176 4-34 (52)
36 PRK00945 acetyl-CoA decarbonyl 63.2 9.6 0.00021 32.2 3.7 23 35-57 25-47 (171)
37 COG3091 SprT Zn-dependent meta 62.5 2 4.4E-05 35.5 -0.5 79 93-179 69-151 (156)
38 smart00531 TFIIE Transcription 62.3 5.6 0.00012 32.5 2.1 37 138-180 99-135 (147)
39 COG0028 IlvB Thiamine pyrophos 62.3 9.1 0.0002 38.1 3.9 28 32-59 188-215 (550)
40 PF13717 zinc_ribbon_4: zinc-r 62.0 6.1 0.00013 24.5 1.7 34 138-178 2-35 (36)
41 COG1979 Uncharacterized oxidor 61.7 4.9 0.00011 37.6 1.7 74 32-119 17-90 (384)
42 COG3142 CutC Uncharacterized p 61.1 8.5 0.00018 34.1 3.0 31 28-58 152-183 (241)
43 COG1198 PriA Primosomal protei 61.1 17 0.00037 37.5 5.7 51 121-177 429-484 (730)
44 PRK06260 threonine synthase; V 60.6 5.3 0.00012 37.8 1.9 31 137-181 2-32 (397)
45 KOG4166|consensus 60.1 12 0.00025 36.5 3.9 35 27-61 281-315 (675)
46 PRK00398 rpoP DNA-directed RNA 59.9 5.7 0.00012 25.7 1.4 29 138-178 3-31 (46)
47 TIGR00853 pts-lac PTS system, 58.0 5.1 0.00011 30.3 1.0 16 43-58 2-17 (95)
48 TIGR00746 arcC carbamate kinas 57.6 15 0.00033 33.9 4.2 68 36-123 174-241 (310)
49 PRK09590 celB cellobiose phosp 55.6 5.5 0.00012 30.8 0.9 14 45-58 2-15 (104)
50 cd05013 SIS_RpiR RpiR-like pro 55.5 9.7 0.00021 29.2 2.3 27 33-60 2-28 (139)
51 TIGR00354 polC DNA polymerase, 54.6 7.5 0.00016 41.0 1.8 39 131-183 1000-1043(1095)
52 PF13289 SIR2_2: SIR2-like dom 54.2 6.2 0.00013 30.9 1.0 14 109-122 2-15 (143)
53 PRK14717 putative glycine/sarc 54.0 25 0.00054 27.1 4.1 35 32-67 7-50 (107)
54 COG0549 ArcC Carbamate kinase 53.8 35 0.00076 31.4 5.8 73 36-127 175-247 (312)
55 PF13719 zinc_ribbon_5: zinc-r 53.3 10 0.00023 23.5 1.7 33 139-178 3-35 (37)
56 TIGR00315 cdhB CO dehydrogenas 53.0 13 0.00029 31.0 2.8 22 35-56 18-39 (162)
57 COG1379 PHP family phosphoeste 52.9 3.8 8.3E-05 38.1 -0.5 41 132-183 240-280 (403)
58 cd00350 rubredoxin_like Rubred 52.5 11 0.00023 22.7 1.7 13 139-151 2-14 (33)
59 PRK05858 hypothetical protein; 52.5 18 0.00038 35.7 4.1 31 185-215 244-274 (542)
60 PRK04023 DNA polymerase II lar 51.7 8.9 0.00019 40.7 1.9 39 131-183 1025-1068(1121)
61 PF02302 PTS_IIB: PTS system, 51.2 7.2 0.00016 28.3 0.9 13 46-58 1-13 (90)
62 cd00729 rubredoxin_SM Rubredox 49.9 12 0.00027 22.8 1.6 13 138-150 2-14 (34)
63 PF07295 DUF1451: Protein of u 49.8 11 0.00023 31.1 1.7 30 136-177 110-139 (146)
64 PRK08322 acetolactate synthase 49.8 19 0.00042 35.3 3.9 19 197-215 256-274 (547)
65 PRK14714 DNA polymerase II lar 49.6 9.8 0.00021 41.3 1.8 39 131-183 1241-1284(1337)
66 PRK07979 acetolactate synthase 49.3 18 0.0004 35.8 3.6 21 196-216 265-285 (574)
67 TIGR03393 indolpyr_decarb indo 49.1 19 0.0004 35.5 3.6 27 30-56 191-217 (539)
68 PRK07524 hypothetical protein; 49.0 17 0.00037 35.6 3.4 26 31-56 188-213 (535)
69 PRK08273 thiamine pyrophosphat 48.9 18 0.00039 36.1 3.5 27 30-56 194-220 (597)
70 COG1440 CelA Phosphotransferas 48.8 10 0.00022 29.3 1.4 14 45-58 2-15 (102)
71 PRK06457 pyruvate dehydrogenas 48.4 18 0.0004 35.6 3.5 42 196-237 252-304 (549)
72 PRK06725 acetolactate synthase 48.3 19 0.0004 35.9 3.5 19 197-215 274-292 (570)
73 cd05564 PTS_IIB_chitobiose_lic 48.2 9.2 0.0002 28.8 1.0 13 46-58 1-13 (96)
74 PF04574 DUF592: Protein of un 48.1 19 0.00041 29.8 2.9 19 33-51 135-153 (153)
75 PRK11032 hypothetical protein; 48.1 12 0.00025 31.4 1.7 30 136-177 122-151 (160)
76 PRK07591 threonine synthase; V 47.9 12 0.00027 35.8 2.1 31 136-181 16-46 (421)
77 PRK10499 PTS system N,N'-diace 47.8 9.8 0.00021 29.4 1.2 14 45-58 4-17 (106)
78 PRK06882 acetolactate synthase 47.7 19 0.00042 35.6 3.5 22 196-217 265-286 (574)
79 cd04235 AAK_CK AAK_CK: Carbama 47.4 51 0.0011 30.4 6.0 69 36-123 172-240 (308)
80 PRK13936 phosphoheptose isomer 47.4 24 0.00051 30.1 3.6 30 28-58 27-56 (197)
81 PRK08611 pyruvate oxidase; Pro 46.7 22 0.00048 35.3 3.8 40 197-236 261-311 (576)
82 PF14419 SPOUT_MTase_2: AF2226 46.7 28 0.00061 29.2 3.7 41 24-73 99-140 (173)
83 PRK09107 acetolactate synthase 46.6 21 0.00045 35.7 3.6 19 197-215 274-292 (595)
84 PRK06965 acetolactate synthase 46.5 20 0.00043 35.7 3.4 27 31-57 208-234 (587)
85 PRK06546 pyruvate dehydrogenas 46.3 20 0.00043 35.7 3.4 42 196-237 258-309 (578)
86 PRK07979 acetolactate synthase 46.2 21 0.00045 35.4 3.5 28 31-58 193-220 (574)
87 PLN02470 acetolactate synthase 46.1 22 0.00048 35.4 3.7 19 197-215 273-291 (585)
88 CHL00099 ilvB acetohydroxyacid 46.1 21 0.00044 35.6 3.4 26 31-56 204-229 (585)
89 PRK08979 acetolactate synthase 45.8 21 0.00045 35.5 3.4 21 196-216 265-285 (572)
90 PRK07789 acetolactate synthase 45.7 21 0.00046 35.7 3.5 21 196-216 290-310 (612)
91 PRK08978 acetolactate synthase 45.5 21 0.00045 35.2 3.3 20 196-215 255-274 (548)
92 TIGR01504 glyox_carbo_lig glyo 45.4 23 0.00049 35.4 3.6 27 31-57 189-215 (588)
93 PRK08527 acetolactate synthase 45.3 22 0.00047 35.3 3.4 20 197-216 263-282 (563)
94 PF01475 FUR: Ferric uptake re 45.1 26 0.00056 27.0 3.2 52 89-151 40-93 (120)
95 TIGR02720 pyruv_oxi_spxB pyruv 45.1 21 0.00045 35.5 3.3 26 31-56 187-212 (575)
96 PRK09259 putative oxalyl-CoA d 45.1 21 0.00046 35.3 3.3 26 31-56 200-225 (569)
97 TIGR01504 glyox_carbo_lig glyo 44.8 22 0.00048 35.5 3.4 19 197-215 263-281 (588)
98 PRK07789 acetolactate synthase 44.7 23 0.0005 35.5 3.6 27 31-57 218-244 (612)
99 PRK07418 acetolactate synthase 44.7 23 0.0005 35.5 3.6 20 196-215 283-302 (616)
100 PF09151 DUF1936: Domain of un 44.5 11 0.00023 22.8 0.7 11 171-181 4-15 (36)
101 TIGR03457 sulphoacet_xsc sulfo 44.3 23 0.0005 35.1 3.5 27 31-57 183-209 (579)
102 PRK08155 acetolactate synthase 43.9 26 0.00057 34.6 3.8 20 197-216 271-290 (564)
103 PRK07586 hypothetical protein; 43.8 22 0.00049 34.6 3.3 27 31-57 184-210 (514)
104 COG1996 RPC10 DNA-directed RNA 43.8 14 0.0003 24.7 1.2 29 138-178 6-34 (49)
105 cd05005 SIS_PHI Hexulose-6-pho 43.4 27 0.00058 28.9 3.2 27 31-58 20-46 (179)
106 PF13248 zf-ribbon_3: zinc-rib 43.2 12 0.00027 21.2 0.8 11 138-148 2-12 (26)
107 PRK07418 acetolactate synthase 43.2 23 0.00051 35.5 3.4 26 31-56 211-236 (616)
108 PRK13937 phosphoheptose isomer 43.0 31 0.00068 29.0 3.6 30 28-58 22-51 (188)
109 PRK06466 acetolactate synthase 42.9 25 0.00055 34.9 3.5 21 196-216 265-285 (574)
110 PRK08979 acetolactate synthase 42.7 24 0.00053 35.0 3.4 26 31-56 193-218 (572)
111 PRK06112 acetolactate synthase 42.7 24 0.00053 35.0 3.4 26 31-56 200-225 (578)
112 PRK06154 hypothetical protein; 42.7 25 0.00055 34.9 3.5 28 31-58 201-228 (565)
113 PRK12352 putative carbamate ki 42.6 28 0.0006 32.3 3.5 70 36-123 177-246 (316)
114 TIGR03127 RuMP_HxlB 6-phospho 42.5 25 0.00055 29.0 3.0 27 31-58 17-43 (179)
115 PRK06725 acetolactate synthase 42.4 27 0.00058 34.8 3.6 27 31-57 201-227 (570)
116 PRK11269 glyoxylate carboligas 42.3 26 0.00057 34.9 3.5 28 30-57 189-216 (591)
117 PLN02470 acetolactate synthase 42.2 25 0.00053 35.1 3.3 26 31-56 202-227 (585)
118 PRK07282 acetolactate synthase 41.7 27 0.00059 34.6 3.5 27 31-57 197-223 (566)
119 TIGR03254 oxalate_oxc oxalyl-C 41.5 26 0.00057 34.5 3.4 31 185-215 247-277 (554)
120 TIGR03394 indol_phenyl_DC indo 41.4 35 0.00076 33.7 4.2 30 28-57 185-214 (535)
121 PLN02573 pyruvate decarboxylas 41.3 28 0.0006 34.7 3.5 29 30-58 210-238 (578)
122 PRK11557 putative DNA-binding 41.3 26 0.00057 31.0 3.1 27 32-59 116-142 (278)
123 PRK09107 acetolactate synthase 41.1 27 0.00059 34.9 3.4 27 31-57 199-225 (595)
124 TIGR03844 cysteate_syn cysteat 40.9 17 0.00036 34.7 1.8 29 138-181 2-30 (398)
125 PRK08617 acetolactate synthase 40.9 27 0.00058 34.4 3.3 26 31-56 188-213 (552)
126 TIGR02418 acolac_catab acetola 40.9 34 0.00074 33.6 4.0 19 197-215 256-274 (539)
127 PRK07092 benzoylformate decarb 40.9 28 0.00061 34.1 3.4 26 31-56 193-218 (530)
128 PF00301 Rubredoxin: Rubredoxi 40.8 25 0.00054 23.2 2.1 15 138-152 1-15 (47)
129 PRK08327 acetolactate synthase 40.8 26 0.00056 34.8 3.2 28 30-57 206-233 (569)
130 PRK07282 acetolactate synthase 40.8 27 0.00058 34.7 3.3 20 196-215 269-288 (566)
131 PRK10310 PTS system galactitol 40.4 14 0.00029 27.8 0.9 15 45-59 3-17 (94)
132 cd02750 MopB_Nitrate-R-NarG-li 40.2 27 0.00058 33.6 3.2 45 199-243 166-228 (461)
133 PF09845 DUF2072: Zn-ribbon co 40.0 16 0.00035 29.5 1.3 12 139-150 2-13 (131)
134 PRK07064 hypothetical protein; 40.0 28 0.0006 34.2 3.3 27 30-56 189-215 (544)
135 TIGR02418 acolac_catab acetola 39.8 30 0.00065 34.0 3.5 26 32-57 183-208 (539)
136 CHL00099 ilvB acetohydroxyacid 39.8 38 0.00082 33.8 4.2 20 197-216 277-296 (585)
137 PRK07525 sulfoacetaldehyde ace 39.7 29 0.00062 34.6 3.3 27 31-57 187-213 (588)
138 TIGR00173 menD 2-succinyl-5-en 39.7 27 0.00059 33.3 3.1 37 31-67 198-245 (432)
139 TIGR03254 oxalate_oxc oxalyl-C 39.4 30 0.00064 34.2 3.4 26 31-56 193-218 (554)
140 PRK08527 acetolactate synthase 39.3 30 0.00065 34.2 3.4 28 31-58 190-217 (563)
141 PRK12474 hypothetical protein; 39.3 30 0.00065 33.9 3.3 26 31-56 188-213 (518)
142 PRK08322 acetolactate synthase 39.0 32 0.00069 33.8 3.5 26 31-56 183-208 (547)
143 PRK11302 DNA-binding transcrip 38.6 27 0.00059 30.9 2.7 28 32-60 116-143 (284)
144 PRK06456 acetolactate synthase 38.5 32 0.0007 34.0 3.5 26 31-56 194-219 (572)
145 PRK09124 pyruvate dehydrogenas 38.5 34 0.00073 33.9 3.6 20 197-216 259-278 (574)
146 PRK08617 acetolactate synthase 38.2 35 0.00076 33.6 3.7 41 197-237 262-317 (552)
147 PRK06048 acetolactate synthase 38.0 32 0.00069 34.0 3.3 27 31-57 194-220 (561)
148 PRK15482 transcriptional regul 38.0 30 0.00065 30.9 2.9 27 32-59 123-149 (285)
149 PRK11269 glyoxylate carboligas 38.0 35 0.00076 34.0 3.6 19 197-215 264-282 (591)
150 PRK06276 acetolactate synthase 37.9 35 0.00075 34.0 3.6 26 31-56 190-215 (586)
151 cd05006 SIS_GmhA Phosphoheptos 37.8 41 0.00089 27.7 3.5 32 28-60 17-48 (177)
152 COG4019 Uncharacterized protei 37.7 37 0.0008 27.4 3.0 25 30-54 22-46 (156)
153 PRK08978 acetolactate synthase 37.5 32 0.00069 33.9 3.3 26 31-56 183-208 (548)
154 PRK06546 pyruvate dehydrogenas 37.5 32 0.00069 34.3 3.3 26 31-56 188-213 (578)
155 KOG3035|consensus 37.5 10 0.00022 33.5 -0.3 38 176-214 3-47 (245)
156 TIGR00118 acolac_lg acetolacta 37.4 34 0.00074 33.7 3.4 25 32-56 189-213 (558)
157 PRK07586 hypothetical protein; 37.1 31 0.00068 33.6 3.1 20 195-214 254-273 (514)
158 PRK06457 pyruvate dehydrogenas 37.0 33 0.00071 33.9 3.2 25 32-56 183-207 (549)
159 COG2331 Uncharacterized protei 36.9 19 0.00041 26.4 1.1 42 137-187 11-57 (82)
160 PLN02573 pyruvate decarboxylas 36.8 29 0.00062 34.6 2.8 19 197-215 285-303 (578)
161 PRK07710 acetolactate synthase 36.3 35 0.00077 33.8 3.4 25 32-56 203-227 (571)
162 PRK08155 acetolactate synthase 36.2 35 0.00076 33.7 3.3 26 32-57 199-224 (564)
163 PRK13265 glycine/sarcosine/bet 36.1 64 0.0014 26.4 4.1 35 32-67 56-99 (154)
164 PRK06466 acetolactate synthase 36.0 35 0.00076 33.8 3.3 26 31-56 193-218 (574)
165 cd02766 MopB_3 The MopB_3 CD i 35.8 28 0.00061 33.9 2.6 45 199-243 153-215 (501)
166 PRK08199 thiamine pyrophosphat 35.8 37 0.00079 33.5 3.4 26 31-56 191-216 (557)
167 PRK06450 threonine synthase; V 35.7 23 0.00049 33.0 1.8 27 139-180 4-30 (338)
168 PRK07449 2-succinyl-5-enolpyru 35.6 55 0.0012 32.3 4.6 41 197-237 280-335 (568)
169 PRK07064 hypothetical protein; 35.6 40 0.00086 33.1 3.6 20 196-215 257-276 (544)
170 PRK06882 acetolactate synthase 35.5 37 0.0008 33.6 3.4 27 31-57 193-219 (574)
171 PRK09411 carbamate kinase; Rev 35.5 60 0.0013 29.9 4.4 68 37-126 168-235 (297)
172 COG1439 Predicted nucleic acid 35.1 25 0.00054 29.9 1.8 27 137-179 138-164 (177)
173 COG1029 FwdB Formylmethanofura 35.1 26 0.00057 33.2 2.1 46 14-59 45-94 (429)
174 cd05015 SIS_PGI_1 Phosphogluco 34.6 94 0.002 25.3 5.2 48 87-134 85-138 (158)
175 PRK05858 hypothetical protein; 34.5 43 0.00094 32.9 3.7 26 31-56 190-215 (542)
176 PRK12454 carbamate kinase-like 34.5 62 0.0013 30.0 4.4 72 34-125 175-246 (313)
177 cd05567 PTS_IIB_mannitol PTS_I 34.5 22 0.00048 26.0 1.2 14 45-58 1-14 (87)
178 PRK08273 thiamine pyrophosphat 34.4 29 0.00064 34.6 2.5 19 196-214 265-283 (597)
179 PRK09259 putative oxalyl-CoA d 34.4 40 0.00087 33.4 3.4 31 185-215 254-284 (569)
180 PRK14715 DNA polymerase II lar 34.3 24 0.00052 38.8 1.8 38 131-183 1530-1572(1627)
181 cd00730 rubredoxin Rubredoxin; 34.3 30 0.00064 23.2 1.7 13 139-151 2-14 (50)
182 PRK06276 acetolactate synthase 34.1 49 0.0011 32.9 4.0 20 196-215 262-281 (586)
183 PF04216 FdhE: Protein involve 33.7 16 0.00036 33.0 0.5 21 129-149 184-208 (290)
184 TIGR00118 acolac_lg acetolacta 33.6 41 0.00089 33.2 3.3 20 196-215 260-279 (558)
185 PF09538 FYDLN_acid: Protein o 33.5 30 0.00065 27.0 1.9 31 138-181 9-39 (108)
186 TIGR03394 indol_phenyl_DC indo 33.3 32 0.00068 34.0 2.5 21 196-216 261-281 (535)
187 PRK08611 pyruvate oxidase; Pro 33.2 43 0.00094 33.3 3.4 25 32-56 191-215 (576)
188 smart00659 RPOLCX RNA polymera 33.2 32 0.0007 22.3 1.7 27 139-178 3-29 (44)
189 cd02765 MopB_4 The MopB_4 CD i 32.8 36 0.00077 33.8 2.7 46 199-244 155-218 (567)
190 PRK07525 sulfoacetaldehyde ace 32.7 32 0.0007 34.2 2.4 20 196-215 259-278 (588)
191 PF14353 CpXC: CpXC protein 32.7 21 0.00045 28.1 0.9 19 133-151 33-51 (128)
192 PRK10892 D-arabinose 5-phospha 32.7 48 0.001 30.1 3.4 95 28-122 30-138 (326)
193 PRK05441 murQ N-acetylmuramic 32.5 50 0.0011 30.1 3.5 32 28-60 46-77 (299)
194 TIGR03393 indolpyr_decarb indo 32.5 32 0.0007 33.8 2.4 21 196-216 265-285 (539)
195 PRK06154 hypothetical protein; 32.3 34 0.00073 34.0 2.5 21 196-216 273-293 (565)
196 PRK08266 hypothetical protein; 32.2 44 0.00095 32.8 3.3 25 32-56 193-217 (542)
197 PRK09124 pyruvate dehydrogenas 32.2 41 0.00088 33.4 3.0 26 31-56 188-213 (574)
198 PRK12380 hydrogenase nickel in 32.2 27 0.00057 27.3 1.4 15 136-150 68-82 (113)
199 PF01155 HypA: Hydrogenase exp 32.2 18 0.00038 28.2 0.4 34 130-177 62-95 (113)
200 COG4588 AcfC Accessory coloniz 32.1 25 0.00055 30.8 1.4 34 32-72 113-146 (252)
201 PRK12354 carbamate kinase; Rev 32.0 53 0.0012 30.3 3.6 71 35-125 166-237 (307)
202 PRK07524 hypothetical protein; 31.8 34 0.00074 33.5 2.4 20 195-214 255-274 (535)
203 COG3962 Acetolactate synthase 31.4 37 0.0008 33.5 2.4 38 32-69 217-266 (617)
204 COG3383 Uncharacterized anaero 31.3 27 0.00059 36.3 1.6 46 198-243 415-479 (978)
205 COG3364 Zn-ribbon containing p 31.1 25 0.00054 27.2 1.0 12 139-150 3-14 (112)
206 PRK11572 copper homeostasis pr 31.0 51 0.0011 29.5 3.2 42 30-71 154-202 (248)
207 PF12172 DUF35_N: Rubredoxin-l 30.9 30 0.00064 21.2 1.2 16 133-148 6-21 (37)
208 TIGR00100 hypA hydrogenase nic 30.9 29 0.00063 27.1 1.4 15 137-151 69-83 (115)
209 COG1773 Rubredoxin [Energy pro 30.7 32 0.00069 23.6 1.4 16 137-152 2-17 (55)
210 cd04239 AAK_UMPK-like AAK_UMPK 30.6 76 0.0017 27.4 4.2 26 30-55 23-48 (229)
211 TIGR00173 menD 2-succinyl-5-en 30.2 75 0.0016 30.3 4.4 40 197-237 269-323 (432)
212 cd05007 SIS_Etherase N-acetylm 30.1 56 0.0012 29.1 3.3 39 28-67 33-78 (257)
213 cd00368 Molybdopterin-Binding 29.7 39 0.00085 30.9 2.3 43 201-243 154-214 (374)
214 cd02752 MopB_Formate-Dh-Na-lik 29.5 37 0.0008 34.6 2.3 45 199-243 165-228 (649)
215 cd07153 Fur_like Ferric uptake 29.3 60 0.0013 24.6 3.0 52 88-150 32-85 (116)
216 PRK04940 hypothetical protein; 29.2 38 0.00082 28.9 1.9 51 179-229 26-97 (180)
217 COG3925 N-terminal domain of t 29.2 35 0.00076 26.1 1.5 14 202-215 39-52 (103)
218 PRK10886 DnaA initiator-associ 29.2 62 0.0013 27.7 3.3 30 28-58 25-54 (196)
219 COG0028 IlvB Thiamine pyrophos 28.8 38 0.00083 33.7 2.2 21 195-215 258-278 (550)
220 PRK09462 fur ferric uptake reg 28.8 71 0.0015 25.7 3.4 52 88-150 49-102 (148)
221 PRK02947 hypothetical protein; 28.6 67 0.0015 28.3 3.5 32 27-59 23-54 (246)
222 TIGR01162 purE phosphoribosyla 28.6 72 0.0016 26.6 3.4 65 44-119 52-116 (156)
223 PRK06965 acetolactate synthase 28.2 42 0.00092 33.4 2.4 19 197-215 281-299 (587)
224 cd02753 MopB_Formate-Dh-H Form 28.1 46 0.001 32.3 2.6 45 200-244 153-215 (512)
225 PRK00564 hypA hydrogenase nick 27.7 33 0.00073 26.9 1.3 20 131-150 64-83 (117)
226 PRK06048 acetolactate synthase 27.7 44 0.00095 33.1 2.4 19 197-215 267-285 (561)
227 PRK12474 hypothetical protein; 27.2 55 0.0012 32.0 3.0 19 196-214 259-277 (518)
228 TIGR02720 pyruv_oxi_spxB pyruv 27.2 45 0.00098 33.1 2.4 29 30-58 75-103 (575)
229 cd05566 PTS_IIB_galactitol PTS 27.2 34 0.00074 24.8 1.2 14 45-58 1-14 (89)
230 PF13240 zinc_ribbon_2: zinc-r 27.0 28 0.0006 19.3 0.5 7 141-147 2-8 (23)
231 PRK08197 threonine synthase; V 26.9 38 0.00082 32.1 1.7 16 136-151 5-20 (394)
232 PRK08327 acetolactate synthase 26.8 33 0.00071 34.1 1.3 19 197-215 273-291 (569)
233 TIGR02300 FYDLN_acid conserved 26.6 49 0.0011 26.6 2.0 31 138-181 9-39 (129)
234 PLN02569 threonine synthase 26.6 37 0.0008 33.3 1.6 27 138-179 49-75 (484)
235 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.2 61 0.0013 25.4 2.6 25 33-58 2-26 (153)
236 TIGR02321 Pphn_pyruv_hyd phosp 26.2 35 0.00077 31.2 1.3 18 46-63 37-54 (290)
237 PF11576 DUF3236: Protein of u 26.2 65 0.0014 26.5 2.7 24 31-54 22-45 (154)
238 PF14319 Zn_Tnp_IS91: Transpos 26.0 49 0.0011 25.7 1.9 28 138-177 42-69 (111)
239 PRK06112 acetolactate synthase 25.5 52 0.0011 32.7 2.4 20 196-215 277-296 (578)
240 PF00731 AIRC: AIR carboxylase 25.5 45 0.00098 27.5 1.7 24 35-58 42-68 (150)
241 COG3961 Pyruvate decarboxylase 25.5 49 0.0011 32.9 2.2 34 184-217 249-290 (557)
242 PRK04351 hypothetical protein; 25.3 42 0.00092 27.6 1.5 38 133-180 107-144 (149)
243 TIGR03457 sulphoacet_xsc sulfo 24.9 53 0.0012 32.6 2.4 20 196-215 255-274 (579)
244 COG3962 Acetolactate synthase 24.9 68 0.0015 31.7 3.0 21 197-217 289-309 (617)
245 PRK06456 acetolactate synthase 24.7 53 0.0012 32.5 2.4 19 197-215 267-285 (572)
246 PRK08199 thiamine pyrophosphat 24.5 56 0.0012 32.3 2.5 20 196-215 263-282 (557)
247 cd05563 PTS_IIB_ascorbate PTS_ 24.5 40 0.00086 24.2 1.1 13 46-58 1-13 (86)
248 cd02761 MopB_FmdB-FwdB The Mop 24.4 94 0.002 29.0 3.9 27 31-57 222-248 (415)
249 PRK12686 carbamate kinase; Rev 24.4 1.6E+02 0.0035 27.2 5.3 67 37-122 175-241 (312)
250 COG2513 PrpB PEP phosphonomuta 24.3 45 0.00097 30.6 1.6 57 46-106 40-107 (289)
251 PF08660 Alg14: Oligosaccharid 24.3 81 0.0017 26.3 3.1 34 27-60 75-108 (170)
252 KOG1718|consensus 24.0 54 0.0012 27.9 1.9 34 28-61 74-111 (198)
253 PRK08266 hypothetical protein; 24.0 52 0.0011 32.3 2.1 21 197-217 257-277 (542)
254 KOG1185|consensus 24.0 96 0.0021 30.7 3.8 52 186-237 259-328 (571)
255 cd02755 MopB_Thiosulfate-R-lik 23.9 60 0.0013 31.1 2.5 26 218-243 190-215 (454)
256 PRK00414 gmhA phosphoheptose i 23.5 82 0.0018 26.6 3.0 29 30-58 26-57 (192)
257 PRK03824 hypA hydrogenase nick 23.4 50 0.0011 26.6 1.6 15 137-151 69-83 (135)
258 PRK12570 N-acetylmuramic acid- 23.4 99 0.0021 28.2 3.7 28 29-57 43-70 (296)
259 cd04242 AAK_G5K_ProB AAK_G5K_P 23.3 1E+02 0.0022 27.1 3.7 31 27-57 20-50 (251)
260 COG2051 RPS27A Ribosomal prote 23.3 53 0.0011 23.4 1.5 17 131-147 12-28 (67)
261 PF13714 PEP_mutase: Phosphoen 23.3 31 0.00068 30.5 0.4 57 46-107 31-100 (238)
262 PRK07710 acetolactate synthase 23.3 59 0.0013 32.2 2.4 19 197-215 275-293 (571)
263 COG1675 TFA1 Transcription ini 23.1 51 0.0011 28.0 1.6 31 138-179 113-143 (176)
264 PF13453 zf-TFIIB: Transcripti 23.1 30 0.00065 21.7 0.2 8 140-147 1-8 (41)
265 TIGR01973 NuoG NADH-quinone ox 23.1 81 0.0018 31.6 3.3 44 199-242 358-420 (603)
266 PRK14558 pyrH uridylate kinase 23.1 1.3E+02 0.0028 26.0 4.3 27 28-54 23-49 (231)
267 smart00463 SMR Small MutS-rela 22.9 1.6E+02 0.0034 20.8 4.0 14 45-58 32-45 (80)
268 PRK03681 hypA hydrogenase nick 22.9 47 0.001 25.9 1.3 14 137-150 69-82 (114)
269 PF02150 RNA_POL_M_15KD: RNA p 22.7 36 0.00078 20.9 0.5 12 171-182 4-15 (35)
270 cd02759 MopB_Acetylene-hydrata 22.6 71 0.0015 30.8 2.7 26 218-243 194-219 (477)
271 COG1737 RpiR Transcriptional r 22.4 93 0.002 27.9 3.3 27 32-59 118-144 (281)
272 cd07363 45_DOPA_Dioxygenase Th 22.4 1.8E+02 0.0038 25.7 5.1 42 20-61 9-50 (253)
273 PF03604 DNA_RNApol_7kD: DNA d 22.4 79 0.0017 19.1 1.9 10 140-149 2-11 (32)
274 PF10263 SprT-like: SprT-like 22.3 48 0.0011 26.6 1.3 36 135-180 120-155 (157)
275 PF00466 Ribosomal_L10: Riboso 22.2 1.5E+02 0.0033 21.8 4.0 31 28-58 4-34 (100)
276 COG2824 PhnA Uncharacterized Z 22.1 50 0.0011 25.8 1.2 36 201-236 53-97 (112)
277 PRK10220 hypothetical protein; 22.0 59 0.0013 25.4 1.6 74 139-229 4-89 (111)
278 COG2103 Predicted sugar phosph 22.0 1.4E+02 0.0031 27.2 4.3 36 32-68 48-90 (298)
279 PRK14559 putative protein seri 21.9 59 0.0013 33.2 2.1 7 170-176 43-49 (645)
280 PF13580 SIS_2: SIS domain; PD 21.8 77 0.0017 25.1 2.4 27 32-58 19-48 (138)
281 cd04254 AAK_UMPK-PyrH-Ec UMP k 21.7 1.5E+02 0.0032 25.7 4.4 27 28-54 23-49 (231)
282 COG1545 Predicted nucleic-acid 21.6 68 0.0015 26.0 2.0 16 134-149 25-40 (140)
283 PF11590 DNAPolymera_Pol: DNA 21.6 78 0.0017 20.3 1.8 23 36-58 2-24 (41)
284 PHA02768 hypothetical protein; 21.2 71 0.0015 21.9 1.7 40 139-183 6-47 (55)
285 TIGR02075 pyrH_bact uridylate 21.2 1.4E+02 0.003 26.0 4.0 31 30-61 26-56 (233)
286 PRK11639 zinc uptake transcrip 21.0 1.3E+02 0.0029 24.9 3.7 55 88-150 57-112 (169)
287 COG0068 HypF Hydrogenase matur 20.9 1.3E+02 0.0029 31.0 4.2 39 170-212 175-218 (750)
288 COG0041 PurE Phosphoribosylcar 20.8 1.3E+02 0.0028 25.1 3.5 27 36-64 48-74 (162)
289 TIGR03129 one_C_dehyd_B formyl 20.5 1.1E+02 0.0024 28.5 3.5 27 31-57 228-254 (421)
290 TIGR02320 PEP_mutase phosphoen 20.4 50 0.0011 30.1 1.1 19 46-64 40-58 (285)
291 cd05710 SIS_1 A subgroup of th 20.3 1.4E+02 0.003 22.9 3.5 23 218-240 79-101 (120)
292 cd05565 PTS_IIB_lactose PTS_II 20.1 55 0.0012 25.0 1.1 13 46-58 2-14 (99)
293 TIGR00824 EIIA-man PTS system, 20.1 1.3E+02 0.0029 23.2 3.4 27 25-51 39-65 (116)
No 1
>KOG1905|consensus
Probab=100.00 E-value=7.6e-66 Score=454.10 Aligned_cols=255 Identities=45% Similarity=0.731 Sum_probs=242.1
Q ss_pred CchhhcccCCCCCCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCC
Q psy8970 1 MSCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKP 80 (258)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p 80 (258)
||+||+.++|.|.++|+.|.||.+|+++.++.++++||+++++|+++||+|||||||+||||||||++|+|++++.+.+
T Consensus 12 ~~v~~~~~~s~~~~~~k~~~~e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~- 90 (353)
T KOG1905|consen 12 MSVNYAHGLSIRLEKGKQGRPEEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKD- 90 (353)
T ss_pred hhhhhhcccchhhhcccccCccccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCcc-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred cccccccCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhcccc
Q psy8970 81 KVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQK 160 (258)
Q Consensus 81 ~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~ 160 (258)
.+...|..|.|+.+|++|.+|++.|.+++||||||||||.|+|+|.+++.|||||++-..|.+|..+|.++..+..++..
T Consensus 91 ~~~~df~~ArPt~THmai~~Lhr~gll~~viSQNvDGLhlrsGlPr~~LsElHGNmfiEvC~sC~~~yvr~~~v~t~gl~ 170 (353)
T KOG1905|consen 91 KFGVDFSEARPTVTHMAIVALHRAGLLKHVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCRPEYVRDRVVDTVGLK 170 (353)
T ss_pred ccCCchhhcCCcchHHHHHHHHHcchhhhhhhccccchhhccCCCHHHHHHHhcchHHHHhhhhcccceehhheeecccc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred CCCCCCCCCC---CCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEc
Q psy8970 161 NLNISCPYRG---FRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCF 221 (258)
Q Consensus 161 ~~~~~C~~~~---c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN 221 (258)
.....|.... |+.|.|.|+..++.|...+|.+.|+.|.++.+.||++|++||||+|. ++||
T Consensus 171 at~R~ct~~k~~~~rscrg~l~d~~ldwe~~lpln~l~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivN 250 (353)
T KOG1905|consen 171 ATGRHCTGRKCRKCRSCRGTLRDFGLDWEDELPLNDLDRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVN 250 (353)
T ss_pred cccccccccccccccccccchhhccccccccCCchhhHHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEe
Confidence 7777887654 55666888999999999999999999999999999999999999998 9999
Q ss_pred CCCCCCCCcccEEEEeeccCcccccc---ccccCcccc
Q psy8970 222 FRKTKQNNNTNLCGRVVKSTDSTRRC---RVRIPARAE 256 (258)
Q Consensus 222 ~~~t~~d~~adl~i~~~~~~~~~~~~---~~~~~~~~~ 256 (258)
+|+|+.|+.|+++|++.+|..+...| ++.+|.|-.
T Consensus 251 lQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~~ 288 (353)
T KOG1905|consen 251 LQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYDR 288 (353)
T ss_pred CccCcccchhheeehhhHHHHHHHHHHHhCCCCCcccC
Confidence 99999999999999999999888888 899999964
No 2
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=2.9e-61 Score=417.17 Aligned_cols=188 Identities=44% Similarity=0.760 Sum_probs=170.7
Q ss_pred CcEEEEeCCccCccCCCCCCCCCCCCccccc-cCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcC
Q psy8970 45 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEK-KGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSG 123 (258)
Q Consensus 45 ~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~-~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG 123 (258)
|+|||+||||||++||||||||++|+|+... +..+|.+.|.|..++||++|++|++|++.|++.+||||||||||+|||
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~~~~~~~~~~~~~~~~~~~Pn~~H~~La~l~~~g~~~~viTQNID~Lh~~AG 80 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELERAGLLKFVISQNVDGLHLRSG 80 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCcccCCccccChHHHhhhhcCCCCHHHHHHHHHHHCCCCceEEecCccchHhHcC
Confidence 5799999999999999999999999998644 356788899999999999999999999999999999999999999999
Q ss_pred CCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhcc
Q psy8970 124 LSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSI 203 (258)
Q Consensus 124 ~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~ 203 (258)
++.++|+|+||++++++|+.|++.+..+.....+......|.|+ .|||.|||+||||||++|+..++.|.+++++
T Consensus 81 ~~~~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~p~C~-----~Cgg~lrP~VV~FgE~lp~~~~~~a~~~~~~ 155 (206)
T cd01410 81 LPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETGRRCH-----ACGGILKDTIVDFGERLPPENWMGAAAAACR 155 (206)
T ss_pred cCcccEEEecCCcCcccCCCCCCccchHHHHHHhhcCCCCCcCC-----CCcCccCCcEEECCCCCCHHHHHHHHHHHhc
Confidence 98899999999999999999998887766544433333356676 9999999999999999999999999999999
Q ss_pred CCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEe
Q psy8970 204 ADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRV 237 (258)
Q Consensus 204 ~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~ 237 (258)
||++|||||||+|+ ++||++||+.|..+|++|++
T Consensus 156 aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~~ 205 (206)
T cd01410 156 ADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIHG 205 (206)
T ss_pred CCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEeC
Confidence 99999999999999 89999999999999999985
No 3
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=3.4e-61 Score=430.15 Aligned_cols=203 Identities=24% Similarity=0.412 Sum_probs=171.5
Q ss_pred HHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccc-c------ccCCCCccccc-----------ccCCCCCHHHHHH
Q psy8970 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTL-E------KKGIKPKVNIS-----------FDDAVPTVTHMAI 98 (258)
Q Consensus 37 la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~-~------~~~~~p~~~~~-----------f~~~~Pn~~H~~L 98 (258)
|+++|++|++|||+||||||++||||||||++|+|+. . .+..+|+.+|. +.+++||++|++|
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~Pn~~H~~l 80 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWARSFVGWPRFSAAQPNAAHRAL 80 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccCCCCCCCHHHHHhCcHHHHHHHHHHHhhhhhhccCCCCHHHHHH
Confidence 5788999999999999999999999999999999986 2 34567764332 3478999999999
Q ss_pred HHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccc------------cCCCCCC
Q psy8970 99 LELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQ------------KNLNISC 166 (258)
Q Consensus 99 ~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~------------~~~~~~C 166 (258)
++|+++|++.+||||||||||++||+ ++|+|+|||++.++|+.|++.+..+.+...+.. .+++...
T Consensus 81 a~L~~~g~~~~viTQNIDgLh~~aG~--~~vielHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (260)
T cd01409 81 AALEAAGRLHGLITQNVDGLHTKAGS--RNVVELHGSLHRVVCLSCGFRTPRAELQDRLEALNPGFAEQAAGQAPDGDVD 158 (260)
T ss_pred HHHHHcCCCeeEEeeccchhHHHcCC--CCEEEEeeecCEEEeCCCcCccCHHHHHHHHhhcCcchhhhhcccCCCcccc
Confidence 99999999999999999999999997 689999999999999999998875544321110 0000000
Q ss_pred ---------CCCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEc
Q psy8970 167 ---------PYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCF 221 (258)
Q Consensus 167 ---------~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN 221 (258)
..+.|+.|||+|||+||||||++|++.++.|.+++++||++|||||||+|+ |+||
T Consensus 159 ~~~~~~~~~~~p~C~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN 238 (260)
T cd01409 159 LEDEQVAGFRVPECERCGGVLKPDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVN 238 (260)
T ss_pred cchhhcccCCCCCCCCCCCEECCCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEc
Confidence 014455999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCcccEEEEeeccC
Q psy8970 222 FRKTKQNNNTNLCGRVVKST 241 (258)
Q Consensus 222 ~~~t~~d~~adl~i~~~~~~ 241 (258)
+++|++|..++++|++.+++
T Consensus 239 ~~~t~~d~~a~~~i~~~~~~ 258 (260)
T cd01409 239 IGPTRADHLATLKVDARCGE 258 (260)
T ss_pred CCCCCCCccccEEEeCChhh
Confidence 99999999999999987654
No 4
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=100.00 E-value=6.4e-60 Score=423.50 Aligned_cols=206 Identities=23% Similarity=0.349 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCC-CCCcccc---------ccCCCCccccccc-------CCCC
Q psy8970 29 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGP-NGVWTLE---------KKGIKPKVNISFD-------DAVP 91 (258)
Q Consensus 29 ~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~-~Glw~~~---------~~~~~p~~~~~f~-------~~~P 91 (258)
..+..|+.++++|+++++|||+||||||++||||||||+ +|+|+.. .+..+|+.+|.|. +++|
T Consensus 13 ~~~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~~~~~~t~~~f~~~p~~~~~~~~~~~~~~~a~P 92 (271)
T PTZ00409 13 TKSITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEVIRDISSDYEIEL 92 (271)
T ss_pred cccccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCCHHHhccHHHHHHChHHHHHHHHHhhhcccCCC
Confidence 344578899999999999999999999999999999998 6999752 2345787777653 5899
Q ss_pred CHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhc-c--ccCCCCCCCC
Q psy8970 92 TVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSV-G--QKNLNISCPY 168 (258)
Q Consensus 92 n~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~C~~ 168 (258)
|++|++|++|++.|++.+||||||||||+|||. ++|+|+|||+.+++|+.|+..+..+...... . .....
T Consensus 93 N~~H~aLa~Le~~g~~~~vITQNIDgLh~rAGs--~~V~ElHG~l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~----- 165 (271)
T PTZ00409 93 NPGHVALSTLESLGYLKFVVTQNVDGLHEESGN--TKVIPLHGSVFEARCCTCRKTIQLNKIMLQKTSHFMHQLP----- 165 (271)
T ss_pred CHHHHHHHHHHhcCCCcEEEeccccchHhHcCC--CcEEEeccCcCcceeCCCCCCcccCHHHHhhhhhhccCCC-----
Confidence 999999999999999999999999999999996 6899999999999999999887654432111 0 00112
Q ss_pred CCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCC-Ccc
Q psy8970 169 RGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQN-NNT 231 (258)
Q Consensus 169 ~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d-~~a 231 (258)
+.|+ |||.|||+||||||++|++.++.|.+++++||++|||||||+|+ |+||+++|++| ..+
T Consensus 166 P~C~-Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~ 244 (271)
T PTZ00409 166 PECP-CGGIFKPNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRIS 244 (271)
T ss_pred CCCC-CCCcccCcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccc
Confidence 3455 99999999999999999999999999999999999999999999 89999999987 478
Q ss_pred cEEEEeeccCc
Q psy8970 232 NLCGRVVKSTD 242 (258)
Q Consensus 232 dl~i~~~~~~~ 242 (258)
|++|++.+++.
T Consensus 245 d~~i~~~~~~~ 255 (271)
T PTZ00409 245 DYHVRAKFSEL 255 (271)
T ss_pred cEEEECcHHHH
Confidence 99999866543
No 5
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.2e-58 Score=410.41 Aligned_cols=200 Identities=30% Similarity=0.463 Sum_probs=176.1
Q ss_pred HHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCcccc--------ccCCCCcccccc--------cCCCCCHHHHHH
Q psy8970 35 KVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE--------KKGIKPKVNISF--------DDAVPTVTHMAI 98 (258)
Q Consensus 35 ~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~--------~~~~~p~~~~~f--------~~~~Pn~~H~~L 98 (258)
++++++|++|++|||+||||||++|||||||+++|+|+.. .+..+|+.+|.| .+++||.+|++|
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~~~~~~~~~~~~~p~~~w~~~~~~~~~~~~~~Pn~~H~al 81 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEGIFPMLEAKPNLAHVLL 81 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCcccccCHHHHHhCHHHHHHHHHHhhcccccCCCCHHHHHH
Confidence 5789999999999999999999999999999999999742 123466666654 478999999999
Q ss_pred HHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCee
Q psy8970 99 LELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL 178 (258)
Q Consensus 99 ~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~l 178 (258)
++|+++|++.+||||||||||+|||. ++|+|+||++.+++|+.|++.|+.+.....+. ....|.|+ .|||.|
T Consensus 82 a~L~~~g~~~~viTQNIDgLh~~aG~--~~VielHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~Cp-----~Cgg~l 153 (244)
T PRK14138 82 AKLEEKGLIEAVITQNIDRLHQKAGS--KKVIELHGNVEEYYCVRCGKRYTVEDVIEKLE-KSDVPRCD-----DCSGLI 153 (244)
T ss_pred HHHHHcCCceEEEeecccChhhHcCC--CeEEEccCCcCeeEECCCCCcccHHHHHHHHh-cCCCCCCC-----CCCCeE
Confidence 99999999999999999999999995 68999999999999999999988766544222 12346666 999999
Q ss_pred cceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEeeccCc
Q psy8970 179 HDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRVVKSTD 242 (258)
Q Consensus 179 rP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~~~~~~ 242 (258)
||+||||||++|+..++.+.+++++||++|||||||+|+ ++||+++|+.|..+|++|++.+++.
T Consensus 154 rP~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~ 233 (244)
T PRK14138 154 RPNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEF 233 (244)
T ss_pred CCCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHH
Confidence 999999999999999999999999999999999999999 8999999999999999999866543
No 6
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=100.00 E-value=1.2e-58 Score=408.25 Aligned_cols=191 Identities=26% Similarity=0.378 Sum_probs=166.8
Q ss_pred CcEEEEeCCccCccCCCCCCCCCC-CCccccc---------------cCCCCcccccc------cCCCCCHHHHHHHHHH
Q psy8970 45 KHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF------DDAVPTVTHMAILELV 102 (258)
Q Consensus 45 ~~ivv~tGAGiS~~SGIPdFR~~~-Glw~~~~---------------~~~~p~~~~~f------~~~~Pn~~H~~L~~L~ 102 (258)
|+|||+|||||||+||||||||++ |+|+... +..+|..+|.| .+++||++|++|++|+
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~a~Pn~~H~~la~L~ 80 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAKELYPGQFKPSVAHYFIKLLE 80 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhhhhccCCCHHHhcCHHHHHHChHHHHHHHHHHhcCcCCCCHHHHHHHHHH
Confidence 579999999999999999999999 9997521 23455555644 4799999999999999
Q ss_pred HcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceE
Q psy8970 103 NRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTI 182 (258)
Q Consensus 103 ~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~V 182 (258)
++|++.+||||||||||+|||++.++|+|||||+.+++|+.|++.|+.+.+...+.. ...|+|+ .|||.|||+|
T Consensus 81 ~~g~~~~viTQNiD~Lh~raG~~~~~V~elHG~l~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~-----~Cgg~lrP~V 154 (235)
T cd01408 81 DKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCIKCKHKYPGDWMREDIFN-QEVPKCP-----RCGGLVKPDI 154 (235)
T ss_pred hcCCceEEEEeccchHHHHcCCCccCEEEeCcCCCccccccCCCcCCHHHHHHHHhC-CCCccCC-----CCCCCccCcE
Confidence 999999999999999999999988899999999999999999998887654333221 1245666 9999999999
Q ss_pred EEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE---------------EEEcCCCCCCC--CcccEEEEeeccC
Q psy8970 183 LDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF---------------LKCFFRKTKQN--NNTNLCGRVVKST 241 (258)
Q Consensus 183 v~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~---------------v~iN~~~t~~d--~~adl~i~~~~~~ 241 (258)
|||||.+|++.++.+.+++++||++|||||||+|+ |+||+++|++| ..+|++|++.+++
T Consensus 155 v~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~ 230 (235)
T cd01408 155 VFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDD 230 (235)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHH
Confidence 99999999988888989999999999999999999 99999999998 8999999987654
No 7
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=100.00 E-value=1.4e-58 Score=408.95 Aligned_cols=199 Identities=31% Similarity=0.516 Sum_probs=176.3
Q ss_pred HHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCcc-cc---------ccCCCCcccccc--------cCCCCCHHH
Q psy8970 34 IKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-LE---------KKGIKPKVNISF--------DDAVPTVTH 95 (258)
Q Consensus 34 l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~-~~---------~~~~~p~~~~~f--------~~~~Pn~~H 95 (258)
+++++++|++|++|||+|||||||+|||||||+.+|+|. .. .+..+|+.+|.| ..++||++|
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~p~~l~s~~~f~~~p~~~~~f~~~~~~~~~~a~Pn~~H 81 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPELVWDFYSERLRLLYLAQPNKAH 81 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCCHHHHhCHHHHhhCHHHHHHHHHHHHHhhhcCCCCHHH
Confidence 578999999999999999999999999999999999998 32 245688888876 358999999
Q ss_pred HHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCC
Q psy8970 96 MAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCR 175 (258)
Q Consensus 96 ~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cg 175 (258)
++|++|+++|++++||||||||||++||+ .+|+||||++.+.+|..|+..+..++....... ...|+|+ .||
T Consensus 82 ~~la~le~~~~~~~iiTQNiD~Lhe~AGs--~~Vi~lHGsl~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~-----~Cg 153 (250)
T COG0846 82 YALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHGSLKRVRCSKCGNQYYDEDVIKFIED-GLIPRCP-----KCG 153 (250)
T ss_pred HHHHHHhhcCCceEEEecccchHHHHcCC--CcEEEeccceeeeEeCCCcCccchhhhhhhccc-CCCCcCc-----cCC
Confidence 99999999999999999999999999998 499999999999999999988876553322211 1245666 999
Q ss_pred C-eecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEee
Q psy8970 176 G-TLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRVV 238 (258)
Q Consensus 176 g-~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~~ 238 (258)
+ .|||+||||||++|++.++.+.+.+++||++||+|||+.|+ ++||.++++++..+|+++++.
T Consensus 154 ~~~lrP~VV~fGE~lp~~~~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~ 233 (250)
T COG0846 154 GPVLRPDVVWFGEPLPASFLDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGD 233 (250)
T ss_pred CccccCCEEEeCCCCCHHHHHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhh
Confidence 9 99999999999999999999999999999999999999999 999999999999999999875
Q ss_pred cc
Q psy8970 239 KS 240 (258)
Q Consensus 239 ~~ 240 (258)
+.
T Consensus 234 a~ 235 (250)
T COG0846 234 AG 235 (250)
T ss_pred HH
Confidence 44
No 8
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=100.00 E-value=6.8e-58 Score=400.36 Aligned_cols=188 Identities=31% Similarity=0.519 Sum_probs=166.1
Q ss_pred HHhCCcEEEEeCCccCccCCCCCCCCCCCCccccc---------cCCCCcccccc--------cCCCCCHHHHHHHHHHH
Q psy8970 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK---------KGIKPKVNISF--------DDAVPTVTHMAILELVN 103 (258)
Q Consensus 41 i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~---------~~~~p~~~~~f--------~~~~Pn~~H~~L~~L~~ 103 (258)
|++|++|||+||||||++|||||||+++|+|+... +..+|+.+|.| .+++||++|++|++|++
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~a~Pn~~H~~La~L~~ 80 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPEEVASIDYFYRNPEEFWRFYKEIILGLLEAQPNKAHYFLAELEK 80 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCCCCHHHhccHHHHhHCHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHh
Confidence 46799999999999999999999999999997422 34567767765 37899999999999999
Q ss_pred cCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEE
Q psy8970 104 RGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTIL 183 (258)
Q Consensus 104 ~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv 183 (258)
+|++.+||||||||||+|||. ++|+|+||++.+++|+.|++.++++.... + .....|.|+ .|||.|||+||
T Consensus 81 ~~~~~~viTQNiDgLh~~AG~--~~v~elHG~l~~~~C~~C~~~~~~~~~~~-~-~~~~~p~C~-----~Cgg~lrP~Vv 151 (222)
T cd01413 81 QGIIKAIITQNIDGLHQRAGS--KNVIELHGTLQTAYCVNCGSKYDLEEVKY-A-KKHEVPRCP-----KCGGIIRPDVV 151 (222)
T ss_pred cCCCeEEEEeccchhhHHcCC--CcEEEccCCcCcceECCCCCCcchhHHHH-h-ccCCCCcCC-----CCCCccCCCEE
Confidence 999999999999999999995 78999999999999999999888765421 1 112245666 99999999999
Q ss_pred EcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEe
Q psy8970 184 DWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRV 237 (258)
Q Consensus 184 ~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~ 237 (258)
||||.+|++.++.|.+++++||++|||||||+|+ |+||+++|++|..+|++|++
T Consensus 152 ~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~~ 221 (222)
T cd01413 152 LFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQD 221 (222)
T ss_pred ECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeC
Confidence 9999999999999999999999999999999999 99999999999999999986
No 9
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.5e-56 Score=405.10 Aligned_cols=210 Identities=24% Similarity=0.409 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccc------cCCCCc---ccc--------cccCCCCCH
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------KGIKPK---VNI--------SFDDAVPTV 93 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~------~~~~p~---~~~--------~f~~~~Pn~ 93 (258)
...|+.|+++|+++++|||+||||||++||||||||++|+|+... +..+|. .+| .+..++||+
T Consensus 6 ~~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pn~ 85 (285)
T PRK05333 6 PAALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRSPPITYQAFMGSDAARRRYWARSMVGWPVFGRAQPNA 85 (285)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccccCCcccHHHHhcCchhhHHHHHHHHhhchhcccCCCCH
Confidence 345668999999999999999999999999999999999997531 122232 122 235789999
Q ss_pred HHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhcc------------ccC
Q psy8970 94 THMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVG------------QKN 161 (258)
Q Consensus 94 ~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~------------~~~ 161 (258)
+|++|++|+++|++++||||||||||+|||. ++|+|+||++..++|++|++.+..+.....+. ..+
T Consensus 86 ~H~aLa~L~~~g~~~~viTQNIDgLh~rAG~--~~ViElHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (285)
T PRK05333 86 AHHALARLGAAGRIERLVTQNVDGLHQRAGS--RDVIELHGRLDGVRCMGCGARHPRAEIQHVLEAANPEWLALEAAPAP 163 (285)
T ss_pred HHHHHHHHHHcCCcccEEecccchhHHHcCC--CCEEeecCCcCEEEECCCCCcCCHHHHHHHHhhcCcchhhhhcccCC
Confidence 9999999999999999999999999999995 78999999999999999998877553321110 000
Q ss_pred CC------CCCC---CCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE---------------
Q psy8970 162 LN------ISCP---YRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF--------------- 217 (258)
Q Consensus 162 ~~------~~C~---~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~--------------- 217 (258)
+. +... .|+|+.|||.|||+||||||.+|+..++.+.+++++||++|||||||.|+
T Consensus 164 ~~~~~~~~~~~~~~~iP~C~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~ 243 (285)
T PRK05333 164 DGDADLEWAAFDHFRVPACPACGGILKPDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKP 243 (285)
T ss_pred CccccccccccccCCCCCCCCCCCcccCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCe
Confidence 00 0000 13455999999999999999999999999999999999999999999998
Q ss_pred -EEEcCCCCCCCCcccEEEEeeccCc
Q psy8970 218 -LKCFFRKTKQNNNTNLCGRVVKSTD 242 (258)
Q Consensus 218 -v~iN~~~t~~d~~adl~i~~~~~~~ 242 (258)
|+||+++++.|..++++|++.+++.
T Consensus 244 ~i~IN~~~t~~~~~~~~~i~g~~~ev 269 (285)
T PRK05333 244 IAALNLGRTRADPLLTLKVEASCAQA 269 (285)
T ss_pred EEEECCCCCCCCcceeEEEeCCHHHH
Confidence 9999999999999999999866543
No 10
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=100.00 E-value=3.4e-56 Score=390.39 Aligned_cols=189 Identities=29% Similarity=0.463 Sum_probs=166.9
Q ss_pred HHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccc------------cCCCCcccccc-------cCCCCCHHHHH
Q psy8970 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK------------KGIKPKVNISF-------DDAVPTVTHMA 97 (258)
Q Consensus 37 la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~------------~~~~p~~~~~f-------~~~~Pn~~H~~ 97 (258)
|+++|++|++|||+||||||++|||||||+++|+|+... +..+|+.+|.| .+++||.+|++
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~ 80 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEIYKYSPEYLLSHDFLEREPEKFYQFVKENLYFPDAKPNIIHQK 80 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCcCCCChHHeecHHHHHHCHHHHHHHHHHHhhCCCCCCCHHHHH
Confidence 467899999999999999999999999999999998631 13455555643 58899999999
Q ss_pred HHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCe
Q psy8970 98 ILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177 (258)
Q Consensus 98 L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~ 177 (258)
|++|++.+ +.+||||||||||++||. ++|+|+||++.+++|+.|++.++++... ..|.|+ .|||.
T Consensus 81 La~L~~~~-~~~viTQNvD~Lh~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~-------~~p~C~-----~Cgg~ 145 (225)
T cd01411 81 MAELEKMG-LKAVITQNIDGLHQKAGS--KNVVEFHGSLYRIYCTVCGKTVDWEEYL-------KSPYHA-----KCGGV 145 (225)
T ss_pred HHHHHHcC-CcEEEEeccchhhhhcCC--CcEEEeCCCcCeeEeCCCCCccchhhcC-------CCCCCC-----CCCCE
Confidence 99999888 899999999999999995 6899999999999999999887764331 245666 99999
Q ss_pred ecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE---------------EEEcCCCCCCCCcccEEEEeeccC
Q psy8970 178 LHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF---------------LKCFFRKTKQNNNTNLCGRVVKST 241 (258)
Q Consensus 178 lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~---------------v~iN~~~t~~d~~adl~i~~~~~~ 241 (258)
|||+||||||.+|+..++.+.++++++|++|||||||.|+ |+||+++++.|..+|++|++ +++
T Consensus 146 lrP~vv~fge~~~~~~~~~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~~~~~~~~~~-~~~ 223 (225)
T cd01411 146 IRPDIVLYEEMLNESVIEEAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLDSPATLVIKD-AVK 223 (225)
T ss_pred eCCCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCCcchhehhcc-hhh
Confidence 9999999999999999999999999999999999999997 99999999999999999987 543
No 11
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=6.3e-56 Score=392.53 Aligned_cols=198 Identities=34% Similarity=0.543 Sum_probs=175.5
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCcccc---------ccCCCCcccccc--------cCCCCCHHH
Q psy8970 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVTH 95 (258)
Q Consensus 33 ~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~---------~~~~~p~~~~~f--------~~~~Pn~~H 95 (258)
+|++++++|++|++|||+||||||++|||||||+.+|+|+.. .+..+|+.+|.| .+++||++|
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~~~~~~~~~~~~~~~p~~~w~f~~~~~~~~~~~~Pn~~H 81 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPEDVASPEGFARDPELVWKFYNERRRQLLDAKPNAAH 81 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccCCCHHHhccHHHHhhCHHHHHHHHHHHHHHhccCCCCHHH
Confidence 578999999999999999999999999999999999999632 234567766654 479999999
Q ss_pred HHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCC
Q psy8970 96 MAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCR 175 (258)
Q Consensus 96 ~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cg 175 (258)
++|++|++.|++++||||||||||++||. ++|+|+||++.+++|+.|++.|..+.... ...|+|+ .||
T Consensus 82 ~~L~~L~~~~~~~~viTqNiD~L~~~aG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C~-----~Cg 149 (242)
T PRK00481 82 RALAELEKLGKLVTVITQNIDGLHERAGS--KNVIELHGSLLRARCTKCGQTYDLDEYLK-----PEPPRCP-----KCG 149 (242)
T ss_pred HHHHHHHhcCCCeEEEEeccchhHHHcCC--CceeeccCCcCceeeCCCCCCcChhhhcc-----CCCCCCC-----CCC
Confidence 99999999999999999999999999996 79999999999999999998887665432 1244566 999
Q ss_pred CeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEeec
Q psy8970 176 GTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRVVK 239 (258)
Q Consensus 176 g~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~~~ 239 (258)
|.|||+||||||.+|+..++.+.++++++|++|||||||+|+ |+||+++++.+..+++.|.+.+
T Consensus 150 g~lrP~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~ 229 (242)
T PRK00481 150 GILRPDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKA 229 (242)
T ss_pred CccCCCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCH
Confidence 999999999999999999999999999999999999999997 9999999999999999999855
Q ss_pred cCc
Q psy8970 240 STD 242 (258)
Q Consensus 240 ~~~ 242 (258)
++.
T Consensus 230 ~~~ 232 (242)
T PRK00481 230 GEV 232 (242)
T ss_pred HHH
Confidence 443
No 12
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=100.00 E-value=1.3e-55 Score=405.14 Aligned_cols=190 Identities=27% Similarity=0.461 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHh--CCcEEEEeCCccCccCCCCCCCCC-CCCccccc---------------cCCCCcccccc------
Q psy8970 31 DKKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEK---------------KGIKPKVNISF------ 86 (258)
Q Consensus 31 ~~~l~~la~~i~~--a~~ivv~tGAGiS~~SGIPdFR~~-~Glw~~~~---------------~~~~p~~~~~f------ 86 (258)
+++++.|+++|++ +++|||+||||||++|||||||++ +|+|+... +..+|+.+|.|
T Consensus 14 ~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~~~~~~~~pe~~fs~~~f~~~P~~f~~~~r~~~~ 93 (349)
T PTZ00410 14 EPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREMDL 93 (349)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccccccCCCCHHHHcCHHHHHHCHHHHHHHHHHhhc
Confidence 3457789999998 679999999999999999999999 59997521 23456656654
Q ss_pred --cCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCC
Q psy8970 87 --DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNI 164 (258)
Q Consensus 87 --~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 164 (258)
..++||++|++|+.|++.|++.+||||||||||++||+++++|+|+||++.+++|..|++.|+.+.....+. ....|
T Consensus 94 ~~~~a~Pn~aH~aLa~Le~~G~l~~vITQNIDgLh~rAG~~~~~ViElHGsl~~~~C~~C~~~~~~~~~~~~~~-~~~vP 172 (349)
T PTZ00410 94 WPGHFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTPYDIEQAYLEAR-SGKVP 172 (349)
T ss_pred ccCcCCCCHHHHHHHHHHhcCCcceEEecchhhhHhhcCCCcccEEEeccCCCeeEeCCCCCCcchhHHHHHhh-cCCCC
Confidence 258999999999999999999999999999999999999899999999999999999998887655432221 12245
Q ss_pred CCCCCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE---------------EEEcCCCCCC
Q psy8970 165 SCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF---------------LKCFFRKTKQ 227 (258)
Q Consensus 165 ~C~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~---------------v~iN~~~t~~ 227 (258)
.|+ .|||.|||+||||||.+|+..++ +.+++++||++|||||||+|+ |+||++++..
T Consensus 173 ~C~-----~CgG~lRPdVVlFGE~lp~~~~~-a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~~~ 244 (349)
T PTZ00410 173 HCS-----TCGGIVKPDVVFFGENLPDAFFN-VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERVGG 244 (349)
T ss_pred CCC-----CCCCccCCcEEecCCcCCHHHHH-HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECccccCC
Confidence 666 99999999999999999998887 889999999999999999999 8999998853
No 13
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=100.00 E-value=4.1e-55 Score=381.69 Aligned_cols=184 Identities=32% Similarity=0.605 Sum_probs=162.1
Q ss_pred CcEEEEeCCccCccCCCCCCCCCCCCcccccc----------CCCCcccccc-------cCCCCCHHHHHHHHHHHcCCC
Q psy8970 45 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEKK----------GIKPKVNISF-------DDAVPTVTHMAILELVNRGKV 107 (258)
Q Consensus 45 ~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~----------~~~p~~~~~f-------~~~~Pn~~H~~L~~L~~~g~~ 107 (258)
|+|||+||||||++|||||||+++|+|+.... ..+|+.+|.| .+++||++|++|++|++.|++
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~Pn~~H~~L~~L~~~~~~ 80 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRERRYPLNAQPNPAHRALAELERKGKL 80 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCccccCChhhccCCHHHHHHCHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhcCCC
Confidence 58999999999999999999999999975321 3567777765 379999999999999999999
Q ss_pred cEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEEEcCC
Q psy8970 108 HYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEH 187 (258)
Q Consensus 108 ~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv~fgE 187 (258)
.+||||||||||++||++ +|+|+||++..++|+.|++.+..+.....+. ....|.|+ .|||.|||+||||||
T Consensus 81 ~~viTQNiDgL~~~aG~~--~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~-~~~~p~C~-----~Cg~~lrP~Vv~fgE 152 (218)
T cd01407 81 KRVITQNVDGLHQRAGSP--KVIELHGSLFRVRCTKCGKEYPRDELQADID-REEVPRCP-----KCGGLLRPDVVFFGE 152 (218)
T ss_pred eeEEEeccchhHHHcCCC--CEEECcCCcCcceeCCCcCCCcHHHHhHhhc-cCCCCcCC-----CCCCccCCCeEECCC
Confidence 999999999999999985 9999999999999999999877654322111 22356676 999999999999999
Q ss_pred CCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEe
Q psy8970 188 NLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRV 237 (258)
Q Consensus 188 ~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~ 237 (258)
++|+. ++.+.++++++|++|||||||.|+ |+||+++++.|..+|++|++
T Consensus 153 ~~p~~-~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~~ 217 (218)
T cd01407 153 SLPEE-LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVILG 217 (218)
T ss_pred CCcHH-HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCccceEEEeC
Confidence 99998 999999999999999999999999 99999999999999999875
No 14
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=100.00 E-value=1.1e-54 Score=384.18 Aligned_cols=184 Identities=26% Similarity=0.375 Sum_probs=155.7
Q ss_pred HhCCcEEEEeCCccCccCCCCCCCCCCCCcccc---------ccCCCCcccccc----------cCCCCCHHHHHHHHHH
Q psy8970 42 DKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF----------DDAVPTVTHMAILELV 102 (258)
Q Consensus 42 ~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~---------~~~~~p~~~~~f----------~~~~Pn~~H~~L~~L~ 102 (258)
++|++|||+||||||++||||||||++|+|+.. .+..+|+..|.| .+++||.+|++|++|+
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~~~Pn~~H~~L~~Le 81 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATPDAFLRNPALVQRFYNERRRALLSSSVKPNKAHFALAKLE 81 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCCCChhhcCCHHHHHhCHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999642 234567666655 3679999999999999
Q ss_pred Hc--CCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCC--Cee
Q psy8970 103 NR--GKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCR--GTL 178 (258)
Q Consensus 103 ~~--g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cg--g~l 178 (258)
+. |++++||||||||||+|||. ++|+|+||++++++|+.|++.|+++.... ...|.|+ .|| |.+
T Consensus 82 ~~~~~~~~~iiTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~-----~~~p~C~-----~Cg~~g~l 149 (242)
T PTZ00408 82 REYRGGKVVVVTQNVDNLHERAGS--THVLHMHGELLKVRCTATGHVFDWTEDVV-----HGSSRCK-----CCGCVGTL 149 (242)
T ss_pred HhhcCCcEEEEeecccchhhHcCC--CcEEEecCccceEEECCCCcccCchhhhh-----cCCCccc-----cCCCCCCC
Confidence 86 88899999999999999996 68999999999999999998887654221 1235666 787 999
Q ss_pred cceEEEcCC-CCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEeecc
Q psy8970 179 HDTILDWEH-NLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRVVKS 240 (258)
Q Consensus 179 rP~Vv~fgE-~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~~~~ 240 (258)
||+|||||| .+|.+.++ +++++||++|||||||+|+ |+||++++..+..+|++|++.+.
T Consensus 150 rP~vV~FGE~~~~~~~~~---~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~ 225 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIE---SVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKAS 225 (242)
T ss_pred CCCEEEcCCCCCcHHHHH---HHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHH
Confidence 999999999 78766555 4478999999999999999 89999999999989999887543
No 15
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=100.00 E-value=3.2e-53 Score=371.06 Aligned_cols=185 Identities=28% Similarity=0.445 Sum_probs=162.4
Q ss_pred CcEEEEeCCccCccCCCCCCCCCCCCcccc---------ccCCCCcccccc--------cCCCCCHHHHHHHHHHHcCCC
Q psy8970 45 KHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVTHMAILELVNRGKV 107 (258)
Q Consensus 45 ~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~---------~~~~~p~~~~~f--------~~~~Pn~~H~~L~~L~~~g~~ 107 (258)
|+|||+||||||++|||||||+++|+|+.. .+..+|+.+|.| ..++||.+|++|++|++++++
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~~~~~~~~~~~~f~~~p~~~w~f~~~~~~~~~~~~Pn~~H~~L~~L~~~~~~ 80 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPEELATPEAFARDPELVWEFYNWRRRKALRAQPNPAHLALAELERRLPN 80 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCCCChhhcCCHHHHHHCHHHHHHHHHHHHHHccccCCCHHHHHHHHHHhcCCC
Confidence 579999999999999999999999999642 134567776765 378999999999999999989
Q ss_pred cEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEEEcCC
Q psy8970 108 HYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEH 187 (258)
Q Consensus 108 ~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv~fgE 187 (258)
++||||||||||++||+ ++|+|+||++..++|..|++.+..+.... ....|.|+ .|||.|||+||||||
T Consensus 81 ~~viTqNiDgL~~~aG~--~~v~e~HG~~~~~~C~~C~~~~~~~~~~~----~~~~p~C~-----~Cgg~lrp~Vv~fge 149 (224)
T cd01412 81 VLLITQNVDGLHERAGS--RNVIELHGSLFRVRCSSCGYVGENNEEIP----EEELPRCP-----KCGGLLRPGVVWFGE 149 (224)
T ss_pred eEEEEccchHhhHHhCC--CceEeeCCCcCccccCCCCCCCCcchhhh----ccCCCCCC-----CCCCccCCceEECCC
Confidence 99999999999999998 79999999999999999998876652211 12356676 999999999999999
Q ss_pred CCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEeeccC
Q psy8970 188 NLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRVVKST 241 (258)
Q Consensus 188 ~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~~~~~ 241 (258)
.+|+ .++.+.++++++|++|||||||+|. |+||++++..+..++++|++.+++
T Consensus 150 ~~p~-~~~~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~ 218 (224)
T cd01412 150 SLPL-ALLEAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGE 218 (224)
T ss_pred CCHH-HHHHHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHH
Confidence 9999 8899999999999999999999999 999999999999999999985543
No 16
>KOG2683|consensus
Probab=100.00 E-value=2.3e-51 Score=352.60 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=179.6
Q ss_pred CChHHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCC-CCccccccCCCCc-------------ccc------
Q psy8970 25 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEKKGIKPK-------------VNI------ 84 (258)
Q Consensus 25 ~~~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~-Glw~~~~~~~~p~-------------~~~------ 84 (258)
+.++..+++|++|.++|..+++++|+|||||||+||||||||++ |+|..... +|- -+|
T Consensus 26 ~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~--kPI~hqdf~rSs~~RqRYWaRnf~g 103 (305)
T KOG2683|consen 26 HADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAH--KPIQHQDFVRSSRCRQRYWARNFVG 103 (305)
T ss_pred CCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCC--CcchHHHHhhhhHHHHHHHHHhhcC
Confidence 34556688999999999999999999999999999999999999 99975322 221 123
Q ss_pred --cccCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhcc----
Q psy8970 85 --SFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVG---- 158 (258)
Q Consensus 85 --~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~---- 158 (258)
.|..++||++|++|++|++.|+..++||||||+||.|||+ +.+.||||+...+.|..|+...++..+.+.+.
T Consensus 104 WprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS--~~~tElHG~~~~VkCl~C~y~~~R~~~Qdrl~~~NP 181 (305)
T KOG2683|consen 104 WPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGS--RMVTELHGSAYQVKCLSCGYIEPRQTFQDRLKYLNP 181 (305)
T ss_pred cchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccc--cceeeeccceEEEEecccCcccchHHHHHHHHhcCc
Confidence 4789999999999999999999999999999999999997 67999999999999999998777665443221
Q ss_pred -----------ccCCCCC-C--------CCCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE-
Q psy8970 159 -----------QKNLNIS-C--------PYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF- 217 (258)
Q Consensus 159 -----------~~~~~~~-C--------~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~- 217 (258)
+.+++.. - ..|-|.+|||.|||+|+||||++|.+..+.+.+.+.+||-+||+||||.|+
T Consensus 182 ~fke~~~~~~~~~pDgDv~lpl~~e~gF~IPeC~~CgG~lKpdV~fFGdnvn~dkv~~~~~~v~e~dg~LvlGsSL~v~S 261 (305)
T KOG2683|consen 182 GFKEAIVSPGHQRPDGDVELPLEFEEGFQIPECEKCGGLLKPDVTFFGDNVNKDKVTFCMEKVKECDGFLVLGSSLMVLS 261 (305)
T ss_pred chhhhccCccccCCCCCeecchhhhhcccCCcccccCCccCCceEEecCCCChHHHHHHHHHHhccCceEEechhHHHHH
Confidence 1111110 0 014577999999999999999999999999999999999999999999999
Q ss_pred ---------------EEEcCCCCCCCCcccEEEEeeccC
Q psy8970 218 ---------------LKCFFRKTKQNNNTNLCGRVVKST 241 (258)
Q Consensus 218 ---------------v~iN~~~t~~d~~adl~i~~~~~~ 241 (258)
.|||+.||+.|+.|+++|..++++
T Consensus 262 g~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gd 300 (305)
T KOG2683|consen 262 GFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGE 300 (305)
T ss_pred HHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhh
Confidence 999999999999999999875544
No 17
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=100.00 E-value=7.6e-50 Score=348.02 Aligned_cols=184 Identities=34% Similarity=0.564 Sum_probs=162.0
Q ss_pred CcEEEEeCCccCccCCCCCCCCCC-CCccccc----------cCCCCcccccc--------cCCCCCHHHHHHHHHHHcC
Q psy8970 45 KHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK----------KGIKPKVNISF--------DDAVPTVTHMAILELVNRG 105 (258)
Q Consensus 45 ~~ivv~tGAGiS~~SGIPdFR~~~-Glw~~~~----------~~~~p~~~~~f--------~~~~Pn~~H~~L~~L~~~g 105 (258)
|++|++||||||++|||||||+.+ |+|+... +..+|+.+|.| .+++||++|++|++|++.+
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~H~~l~~l~~~~ 80 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRYTPLDAKPNPAHRALAELERKG 80 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCCcccccCCHHHHHHCHHHHHHHHHHHHhhhCcCCCCHHHHHHHHHHHcC
Confidence 579999999999999999999998 9997532 12355555554 4799999999999999999
Q ss_pred CCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEEEc
Q psy8970 106 KVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDW 185 (258)
Q Consensus 106 ~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv~f 185 (258)
++.+|||||||+||++||++.++|+|+||++...+|..|++.++.+..... ...|.|+ .|||.|||+|++|
T Consensus 81 ~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~----~~~p~C~-----~C~~~l~p~v~~f 151 (222)
T cd00296 81 KLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLER----EKPPRCP-----KCGGLLRPDVVDF 151 (222)
T ss_pred CCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhc----cCCCCCC-----CCCCcccCceEEC
Confidence 999999999999999999988899999999999999999988776654422 2356676 9999999999999
Q ss_pred CCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCC--CcccEEEEe
Q psy8970 186 EHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQN--NNTNLCGRV 237 (258)
Q Consensus 186 gE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d--~~adl~i~~ 237 (258)
||.+|+..+..+.+++.++|++|||||||+|+ ++||++++..| ..+|+++.+
T Consensus 152 ge~~~~~~~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~~ 221 (222)
T cd00296 152 GEALPKEWFDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVILG 221 (222)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEeC
Confidence 99999988888999999999999999999999 99999999999 788888764
No 18
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=100.00 E-value=2.5e-51 Score=347.30 Aligned_cols=157 Identities=38% Similarity=0.712 Sum_probs=122.5
Q ss_pred CCccCccCCCCCCCC-CCCCcccccc---------CCCCccccc-c---------cCCCCCHHHHHHHHHHHcCCCcEEE
Q psy8970 52 GAGISTSAGIPDFRG-PNGVWTLEKK---------GIKPKVNIS-F---------DDAVPTVTHMAILELVNRGKVHYVV 111 (258)
Q Consensus 52 GAGiS~~SGIPdFR~-~~Glw~~~~~---------~~~p~~~~~-f---------~~~~Pn~~H~~L~~L~~~g~~~~vi 111 (258)
|||||++|||||||| ++|+|+.... ..+|.+.|. | ..++||.+|++|++|++.|++++||
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~a~Pn~~H~~La~L~~~g~~~~vi 80 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTKYKPEELATPEAFFSDPEFVWEKFYRFRRKVISKDAEPNPGHRALAELEKKGKLKRVI 80 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHHCHHHHHSSHHHHHHHHHHHHHHHHHHHHHHCTCTS---HHHHHHHHHHHTTSEEEEE
T ss_pred CCccchhhCCCccccCCCCcceeeeccccccccccccccchhhhHHHHHhhhhccccCCCChhHHHHHHHHHhhhhccce
Confidence 999999999999999 8999985321 123333443 2 3799999999999999999999999
Q ss_pred eccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEEEcCCCCCh
Q psy8970 112 SQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQ 191 (258)
Q Consensus 112 TQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv~fgE~~~~ 191 (258)
||||||||+|||++ +|+|||||++.++|..|++.+..+........ ...++|+ .||+.|||+||||||++|
T Consensus 81 TQNIDgLh~~AG~~--~vielHG~l~~~~C~~C~~~~~~~~~~~~~~~-~~~~~C~-----~C~~~lrp~vv~fgE~~~- 151 (178)
T PF02146_consen 81 TQNIDGLHQKAGSP--KVIELHGSLFRLRCSKCGKEYDREDIVDSIDE-EEPPRCP-----KCGGLLRPDVVLFGESLP- 151 (178)
T ss_dssp ES-SSSHHHHTTES--CEEETTEEEEEEEETTTSBEEEGHHHHHHHHT-TSSCBCT-----TTSCBEEEEE--BTSB-S-
T ss_pred ecccchhhhcccch--hhHHHHhhhceeeecCCCccccchhhcccccc-ccccccc-----ccCccCCCCeeecCCCCH-
Confidence 99999999999985 99999999999999999999887665443322 2345676 999999999999999999
Q ss_pred HHHHHHHHHhccCCEEEEEecCceeE
Q psy8970 192 KDINMGDYNSSIADLSICLGKCLLSF 217 (258)
Q Consensus 192 ~~~~~a~~~~~~~Dl~lvvGTSl~V~ 217 (258)
+.+..|.+++++|||+|||||||+|+
T Consensus 152 ~~~~~~~~~~~~~Dl~lviGTSl~V~ 177 (178)
T PF02146_consen 152 EEIEEAIEDAEEADLLLVIGTSLQVY 177 (178)
T ss_dssp HHHHHHHHHHHH-SEEEEESS-STST
T ss_pred HHHHHHHHHHHcCCEEEEEccCcEEE
Confidence 78889999999999999999999985
No 19
>KOG2684|consensus
Probab=100.00 E-value=2e-49 Score=363.90 Aligned_cols=220 Identities=26% Similarity=0.340 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCcccccc---------------CCCCcccccc------cCCC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKK---------------GIKPKVNISF------DDAV 90 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~---------------~~~p~~~~~f------~~~~ 90 (258)
+.+..+..+|++||+|||+||||||+++|||||||.+|+|...+. ..+|..+..| ....
T Consensus 76 ~t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~~~~l~sp~~mFd~~~fr~d~~~F~~~a~~l~~~~~~ 155 (412)
T KOG2684|consen 76 NTLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLKAPDLPSPQAMFDISYFRDDPSIFYRFARELKPPSNN 155 (412)
T ss_pred ccHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhhcccCCCHHHhccchhhhcccHHHHHHHHHhcCCccC
Confidence 357788899999999999999999999999999999999974322 2233323222 3566
Q ss_pred CCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCC-
Q psy8970 91 PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYR- 169 (258)
Q Consensus 91 Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~- 169 (258)
|++.|.+|+.|+++||+.++||||||+||++||+...+++++|||+.+..|+.|+..++++.+...+.. ...|.||.+
T Consensus 156 ps~~H~Fi~~L~~~gkLlR~YTQNID~LE~~aGl~~~~lVq~HGSf~t~sCt~C~~k~~~~~~~~~~~~-~~vp~CP~C~ 234 (412)
T KOG2684|consen 156 PSAFHEFIKLLEKKGKLLRNYTQNIDGLERKAGLSTNKLVQCHGSFKTASCTKCGYKKPFEELREDIRN-QEVPVCPDCE 234 (412)
T ss_pred CchHHHHHHHHHhcCceeEEeecccchhhhccCCCcCceEEeccccceeeecccccccChHHHHHHHhc-CcCccCcccc
Confidence 999999999999999999999999999999999988889999999999999999998887755433321 224555520
Q ss_pred --------CCCCC---C-CeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE---------------EEEcC
Q psy8970 170 --------GFRPC---R-GTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF---------------LKCFF 222 (258)
Q Consensus 170 --------~c~~C---g-g~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~---------------v~iN~ 222 (258)
..+.| + |.|||+||||||.+|+............+||+|||||||+|+ |.||+
T Consensus 235 ~~~~~r~~~g~r~~~~~vgvlrP~IvffgE~lP~~~~~~~~~d~d~~DllIviGTSLKV~pV~~iv~~~~~~vpqIliNr 314 (412)
T KOG2684|consen 235 GKNEKRRGAGKRCESEGVGVLRPDIVFFGENLPDSFHIGVGADLDECDLLIVIGTSLKVRPVAEIVKSFPAKVPQILINR 314 (412)
T ss_pred cccccccCccccccccCccccccceEEecCCCChHHHhhhhccccccceEEEeCCccccccHHHHHhhhcccCcEEEecC
Confidence 00111 1 499999999999999998888877888899999999999999 99999
Q ss_pred CCCCCCCcccEEEEeeccCccccc---cccccCc
Q psy8970 223 RKTKQNNNTNLCGRVVKSTDSTRR---CRVRIPA 253 (258)
Q Consensus 223 ~~t~~d~~adl~i~~~~~~~~~~~---~~~~~~~ 253 (258)
++.+... .|+-+.+.|+...... |+|+.|+
T Consensus 315 ~~v~h~e-fd~~ll~~CD~v~~~l~~~~g~~~~~ 347 (412)
T KOG2684|consen 315 DPVPHAE-FDVELLGDCDDVIRLLCQKCGWLKPL 347 (412)
T ss_pred ccccccc-cChhhccchHHHHHHHHhhccccchH
Confidence 9776544 5555566676655543 4777654
No 20
>KOG2682|consensus
Probab=100.00 E-value=2.1e-47 Score=328.42 Aligned_cols=211 Identities=23% Similarity=0.347 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHh--CCcEEEEeCCccCccCCCCCCCCCC-CCccccc---------------cCCCCcccccc------
Q psy8970 31 DKKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF------ 86 (258)
Q Consensus 31 ~~~l~~la~~i~~--a~~ivv~tGAGiS~~SGIPdFR~~~-Glw~~~~---------------~~~~p~~~~~f------ 86 (258)
+-.++++|+++++ .++++++.||||||++|||||||++ |+|+..+ |..+|+-++..
T Consensus 21 ~l~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLqr~~LPYpEAiFel~yF~~nP~PF~tLAkELyP 100 (314)
T KOG2682|consen 21 ELTLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQRYHLPYPEAIFELSYFKKNPEPFFTLAKELYP 100 (314)
T ss_pred hhhHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHHHhcCCChhhhhccHHhhcCCchHHHHHHHhCC
Confidence 4468899999997 5799999999999999999999995 9997432 23455443322
Q ss_pred cCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccC-CcccccchhhhhhhccccCCCCC
Q psy8970 87 DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN-KCERQFVRKSATNSVGQKNLNIS 165 (258)
Q Consensus 87 ~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~-~C~~~~~~~~~~~~~~~~~~~~~ 165 (258)
.+.+||.+|++|+.|.++|.+.++||||||+|++.||++++.++|.||++.+.+|. .|++.|+.+.+...+..+. .|+
T Consensus 101 gnfkPt~~HYflrLl~DK~lL~r~YTQNIDtLER~aGv~d~~lvEAHGtFa~s~Ci~~C~~~yp~e~~ka~i~~~~-vpk 179 (314)
T KOG2682|consen 101 GNFKPTITHYFLRLLHDKGLLLRCYTQNIDTLERIAGVPDEDLVEAHGTFATSHCISSCRHEYPLEWMKAKIMSEV-VPK 179 (314)
T ss_pred CCcCchhHHHHHHHHccccHHHHHHhccchHHHHhcCCCHHHHHHhccceeeeeehhhhcCcCCHHHHHHHHHhcc-CCC
Confidence 47899999999999999999999999999999999999999999999999999999 6999999887665554432 566
Q ss_pred CCCCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE---------------EEEcCCCCCC---
Q psy8970 166 CPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF---------------LKCFFRKTKQ--- 227 (258)
Q Consensus 166 C~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~---------------v~iN~~~t~~--- 227 (258)
|+ .|+|++||+||||||++|..+++.-+.....+|++||+||||+|+ ++||+++..-
T Consensus 180 C~-----vC~~lVKP~IVFfGE~LP~rF~e~~~~D~~~~dl~lV~GTSL~V~PFAsLpe~vp~~v~RlLiNre~~Gp~~~ 254 (314)
T KOG2682|consen 180 CE-----VCQGLVKPDIVFFGESLPARFFECMQSDFLKVDLLLVMGTSLQVQPFASLPEKVPLSVPRLLINREKAGPFLG 254 (314)
T ss_pred Cc-----hhhccccccEEEecCCccHHHHHHHhhcccccceEEEeccceeeeecccchhhhhhcCceeEecccccCcccc
Confidence 76 999999999999999999999988888999999999999999999 9999997662
Q ss_pred -CCcccEEEEeeccCcccccc
Q psy8970 228 -NNNTNLCGRVVKSTDSTRRC 247 (258)
Q Consensus 228 -d~~adl~i~~~~~~~~~~~~ 247 (258)
-...|+.+.+.++..+-..|
T Consensus 255 ~~r~rDv~~lgd~d~~~eaLv 275 (314)
T KOG2682|consen 255 MIRYRDVAWLGDCDQGVEALV 275 (314)
T ss_pred CcccccchhhccHHHHHHHHH
Confidence 12355666665554444333
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=99.02 E-value=2e-10 Score=101.46 Aligned_cols=78 Identities=27% Similarity=0.346 Sum_probs=53.7
Q ss_pred CcEEEEeCCccCccCCCCCCCCC-CCCccccccCC--------CC-------------------c---cccc--ccCCCC
Q psy8970 45 KHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGI--------KP-------------------K---VNIS--FDDAVP 91 (258)
Q Consensus 45 ~~ivv~tGAGiS~~SGIPdFR~~-~Glw~~~~~~~--------~p-------------------~---~~~~--f~~~~P 91 (258)
.++|+|.|||+|+++|+|++++- ..++....... .+ . ..+. -...+|
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTLLDEIASELGLEIDGYSVEAKDENDYLELAELLEKEFGTIGIKINAVLEEKTRPDFEP 80 (242)
T ss_pred CCEEEEecCccccccCCCChHHHHHHHHHHcCCccchhhccccchhhHHHHHHHHHHHhccchhhhHHHHHhccCCCCCC
Confidence 47899999999999999999863 22221100000 00 0 0001 135789
Q ss_pred CHHHHHHHHHHHcCC-CcEEEeccCcchHhhc
Q psy8970 92 TVTHMAILELVNRGK-VHYVVSQNIDGLHLRS 122 (258)
Q Consensus 92 n~~H~~L~~L~~~g~-~~~viTQNIDgLh~kA 122 (258)
++.|.+|++|...+. ...|||+|.|.|.++|
T Consensus 81 ~~~h~~i~~l~~~~~~~~~iiTTNyD~llE~a 112 (242)
T cd01406 81 SPLHELLLRLFINNEGDVIIITTNYDRLLETA 112 (242)
T ss_pred CHHHHHHHhchhccCCceEEEEcchHHHHHHH
Confidence 999999999987653 5689999999999986
No 22
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=81.24 E-value=1.1 Score=27.97 Aligned_cols=34 Identities=24% Similarity=0.652 Sum_probs=20.5
Q ss_pred eecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeec
Q psy8970 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLH 179 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lr 179 (258)
+..+|..|++.+....... . .....|| .||+.++
T Consensus 4 Y~y~C~~Cg~~fe~~~~~~---~-~~~~~CP-----~Cg~~~~ 37 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKIS---D-DPLATCP-----ECGGDVR 37 (41)
T ss_pred EEEEcCCCCCEEEEEEecC---C-CCCCCCC-----CCCCcce
Confidence 4569999999775432211 1 1234566 9998654
No 23
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=78.14 E-value=1.6 Score=28.04 Aligned_cols=35 Identities=20% Similarity=0.703 Sum_probs=21.4
Q ss_pred eeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCC-eec
Q psy8970 136 MYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRG-TLH 179 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg-~lr 179 (258)
++..+|..||+.+..... +.. .....|| .||+ .++
T Consensus 3 ~Yey~C~~Cg~~fe~~~~---~~~-~~~~~CP-----~Cg~~~~~ 38 (42)
T PF09723_consen 3 IYEYRCEECGHEFEVLQS---ISE-DDPVPCP-----ECGSTEVR 38 (42)
T ss_pred CEEEEeCCCCCEEEEEEE---cCC-CCCCcCC-----CCCCCceE
Confidence 456799999987654322 222 2345576 8997 443
No 24
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.75 E-value=15 Score=36.18 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCCEEEEEecCceeE
Q psy8970 193 DINMGDYNSSIADLSICLGKCLLSF 217 (258)
Q Consensus 193 ~~~~a~~~~~~~Dl~lvvGTSl~V~ 217 (258)
.++...+.+.+-+.=|+|||.+...
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~k 324 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAK 324 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCccccc
Confidence 3455667776666677799987543
No 25
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=74.24 E-value=2.3 Score=33.73 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 34 IKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 34 l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
+++++++|++|++.++++|.|+...
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~ 25 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRS 25 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHT
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChh
Confidence 5789999999999999999997643
No 26
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=73.20 E-value=2.6 Score=33.36 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.8
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++||++|++||++.
T Consensus 70 ~~~~~l~~aDlvl~iG~~~~ 89 (137)
T PF00205_consen 70 AANEALEQADLVLAIGTRLS 89 (137)
T ss_dssp HHHHHHHHSSEEEEESSSSS
T ss_pred HHHHHhcCCCEEEEECCCCc
Confidence 46677899999999999873
No 27
>PRK05580 primosome assembly protein PriA; Validated
Probab=69.15 E-value=24 Score=36.05 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=16.2
Q ss_pred HHHHHHHHhccCCEEEEEecCcee
Q psy8970 193 DINMGDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 193 ~~~~a~~~~~~~Dl~lvvGTSl~V 216 (258)
..+...+.+.+-+.=|+|||.+..
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~ia 491 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQMLA 491 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhhc
Confidence 455566667666666779998753
No 28
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=68.79 E-value=3.5 Score=34.19 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=24.2
Q ss_pred eeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeec
Q psy8970 136 MYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLH 179 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lr 179 (258)
-....|+.|+..|...+... .+..|| .||+.|.
T Consensus 107 ~~~Y~Cp~c~~r~tf~eA~~------~~F~Cp-----~Cg~~L~ 139 (158)
T TIGR00373 107 NMFFICPNMCVRFTFNEAME------LNFTCP-----RCGAMLD 139 (158)
T ss_pred CCeEECCCCCcEeeHHHHHH------cCCcCC-----CCCCEee
Confidence 34568999999998876542 256777 9999753
No 29
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=68.39 E-value=10 Score=37.51 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=40.3
Q ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEeCCccCc------------cCCCCCCCCC
Q psy8970 16 GKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIST------------SAGIPDFRGP 67 (258)
Q Consensus 16 ~~~~~~e~~~~~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~------------~SGIPdFR~~ 67 (258)
+++-.+....+++.+++.+..++++|.++|+.+|++|+.+|. +.|+|.|--+
T Consensus 181 ~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~p 244 (557)
T COG3961 181 TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFPVATLP 244 (557)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEee
Confidence 344444445778888999999999999999999999999884 4556666544
No 30
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=67.99 E-value=3.4 Score=35.02 Aligned_cols=33 Identities=24% Similarity=0.593 Sum_probs=24.7
Q ss_pred eecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecc
Q psy8970 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHD 180 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP 180 (258)
....|+.|+..|...+... .+..|| .||+.|..
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~------~~F~Cp-----~Cg~~L~~ 148 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME------YGFRCP-----QCGEMLEE 148 (178)
T ss_pred CEEECCCCCcEEeHHHHhh------cCCcCC-----CCCCCCee
Confidence 3568999999998876532 256777 99998866
No 31
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=67.21 E-value=4.1 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.492 Sum_probs=19.7
Q ss_pred cccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeec
Q psy8970 139 DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLH 179 (258)
Q Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lr 179 (258)
..|++|+..|..+... +........|+ .||..+.
T Consensus 3 ~~CP~C~~~~~v~~~~--~~~~~~~v~C~-----~C~~~~~ 36 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQ--LGANGGKVRCG-----KCGHVWY 36 (38)
T ss_pred EECCCCCCEEEeCHHH--cCCCCCEEECC-----CCCCEEE
Confidence 6799999887654321 21111123566 8987653
No 32
>PRK12496 hypothetical protein; Provisional
Probab=65.97 E-value=3.7 Score=34.37 Aligned_cols=29 Identities=14% Similarity=0.557 Sum_probs=19.7
Q ss_pred eecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeec
Q psy8970 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLH 179 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lr 179 (258)
+..+|..|++.|+.+. ....|| .||..++
T Consensus 126 w~~~C~gC~~~~~~~~---------~~~~C~-----~CG~~~~ 154 (164)
T PRK12496 126 WRKVCKGCKKKYPEDY---------PDDVCE-----ICGSPVK 154 (164)
T ss_pred eeEECCCCCccccCCC---------CCCcCC-----CCCChhh
Confidence 3467999999886432 123477 8998764
No 33
>PRK14873 primosome assembly protein PriA; Provisional
Probab=65.58 E-value=22 Score=36.34 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccc
Q psy8970 91 PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQ 147 (258)
Q Consensus 91 Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~ 147 (258)
|.....+|.+-.++| .-++--| |-|+ ..++-++-.=+..+|.+|+-.
T Consensus 355 s~~l~~~i~~~L~~g--qvll~ln------RrGy--ap~l~C~~Cg~~~~C~~C~~~ 401 (665)
T PRK14873 355 PSLAFRAARDALEHG--PVLVQVP------RRGY--VPSLACARCRTPARCRHCTGP 401 (665)
T ss_pred CHHHHHHHHHHHhcC--cEEEEec------CCCC--CCeeEhhhCcCeeECCCCCCc
Confidence 345556666555667 3444434 5555 357777777778888888754
No 34
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=65.29 E-value=5.4 Score=24.84 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=18.7
Q ss_pred cccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCee
Q psy8970 139 DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL 178 (258)
Q Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~l 178 (258)
..|..||+.|...... ......|. .||+.|
T Consensus 2 r~C~~Cg~~Yh~~~~p-----P~~~~~Cd-----~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYHIEFNP-----PKVEGVCD-----NCGGEL 31 (36)
T ss_dssp EEETTTTEEEETTTB-------SSTTBCT-----TTTEBE
T ss_pred cCcCCCCCccccccCC-----CCCCCccC-----CCCCee
Confidence 5799999988754321 11234576 899865
No 35
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=64.87 E-value=4.8 Score=26.57 Aligned_cols=31 Identities=26% Similarity=0.710 Sum_probs=18.5
Q ss_pred eecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCC
Q psy8970 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRG 176 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg 176 (258)
+..+|.+|+..+..... +.. .....|| .||+
T Consensus 4 Yey~C~~Cg~~fe~~~~---~~~-~~~~~CP-----~Cg~ 34 (52)
T TIGR02605 4 YEYRCTACGHRFEVLQK---MSD-DPLATCP-----ECGG 34 (52)
T ss_pred EEEEeCCCCCEeEEEEe---cCC-CCCCCCC-----CCCC
Confidence 45789999987764321 111 1234566 8986
No 36
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=63.21 E-value=9.6 Score=32.19 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCcEEEEeCCccCc
Q psy8970 35 KVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 35 ~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
+.++++|++|++.|++.|.|+..
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccc
Confidence 47889999999999999999975
No 37
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=62.49 E-value=2 Score=35.51 Aligned_cols=79 Identities=20% Similarity=0.423 Sum_probs=49.4
Q ss_pred HHHHHHHHHHH----cCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCC
Q psy8970 93 VTHMAILELVN----RGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY 168 (258)
Q Consensus 93 ~~H~~L~~L~~----~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~ 168 (258)
.+|+-+-.... .|+.+..+-+.||||--..-.+ ..+-.+-|+-+.-+|. |+..|....-.+..... ...+|.
T Consensus 69 LaHl~ly~~~gr~~phg~ewk~lm~qV~~l~~~~~h~-~~~~~v~~~~~~Y~C~-C~q~~l~~RRhn~~~~g-~~YrC~- 144 (156)
T COG3091 69 LAHLHLYQEFGRYKPHGKEWKLLMQQVLGLRFCRTHQ-FEVQSVRRTTYPYRCQ-CQQHYLRIRRHNTVRRG-EVYRCG- 144 (156)
T ss_pred HHHHHHHHHcCCCCCCchhHHHHHHHhCCCCCCccch-HHHhhccccceeEEee-cCCccchhhhccccccc-ceEEec-
Confidence 46665554443 2566777888999886544222 2455567788899999 99887654433222211 145677
Q ss_pred CCCCCCCCeec
Q psy8970 169 RGFRPCRGTLH 179 (258)
Q Consensus 169 ~~c~~Cgg~lr 179 (258)
+|+|.|.
T Consensus 145 ----~C~gkL~ 151 (156)
T COG3091 145 ----KCGGKLV 151 (156)
T ss_pred ----cCCceEE
Confidence 9999774
No 38
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=62.28 E-value=5.6 Score=32.46 Aligned_cols=37 Identities=19% Similarity=0.556 Sum_probs=22.8
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecc
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHD 180 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP 180 (258)
...|+.|+..|...+....... .....|| .||+.|..
T Consensus 99 ~Y~Cp~C~~~y~~~ea~~~~d~-~~~f~Cp-----~Cg~~l~~ 135 (147)
T smart00531 99 YYKCPNCQSKYTFLEANQLLDM-DGTFTCP-----RCGEELEE 135 (147)
T ss_pred EEECcCCCCEeeHHHHHHhcCC-CCcEECC-----CCCCEEEE
Confidence 4689999999887654322111 1114566 99997644
No 39
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=62.28 E-value=9.1 Score=38.13 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
++|++++++|.+|++.||+.|.|+.-+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 8899999999999999999999998876
No 40
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=61.97 E-value=6.1 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.545 Sum_probs=19.7
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCee
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL 178 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~l 178 (258)
..+|++|+..|..++.. +......-+|+ .||...
T Consensus 2 ~i~Cp~C~~~y~i~d~~--ip~~g~~v~C~-----~C~~~f 35 (36)
T PF13717_consen 2 IITCPNCQAKYEIDDEK--IPPKGRKVRCS-----KCGHVF 35 (36)
T ss_pred EEECCCCCCEEeCCHHH--CCCCCcEEECC-----CCCCEe
Confidence 35799999988765532 22221123455 888653
No 41
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=61.65 E-value=4.9 Score=37.59 Aligned_cols=74 Identities=28% Similarity=0.331 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEE
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVV 111 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~vi 111 (258)
.++.+|.+-|+..++|+++.|+| |. -++|+|+.-....+-..+..|...+||+....+.+-.+ -+-
T Consensus 17 g~i~~l~~ei~~~~kVLi~YGGG-SI--------KrnGvydqV~~~Lkg~~~~E~~GVEPNP~~~Tv~kaV~-----i~k 82 (384)
T COG1979 17 GQIAELREEIPKDAKVLIVYGGG-SI--------KKNGVYDQVVEALKGIEVIEFGGVEPNPRLETLMKAVE-----ICK 82 (384)
T ss_pred chHHHHHhhccccCeEEEEecCc-cc--------cccchHHHHHHHhcCceEEEecCCCCCchHHHHHHHHH-----HHH
Confidence 45788888999999999999999 32 24688874322222333567899999998776654443 123
Q ss_pred eccCcchH
Q psy8970 112 SQNIDGLH 119 (258)
Q Consensus 112 TQNIDgLh 119 (258)
.||||=|.
T Consensus 83 ee~idflL 90 (384)
T COG1979 83 EENIDFLL 90 (384)
T ss_pred HcCceEEE
Confidence 45666554
No 42
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=61.10 E-value=8.5 Score=34.11 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEeCCccCcc
Q psy8970 28 EDFDKKIKVLSEWIDKA-KHVVLHTGAGISTS 58 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a-~~ivv~tGAGiS~~ 58 (258)
....+.+..++++|+.| .+|.|+.|||+..+
T Consensus 152 ~sa~eg~~~l~~li~~a~gri~Im~GaGV~~~ 183 (241)
T COG3142 152 ASALEGLDLLKRLIEQAKGRIIIMAGAGVRAE 183 (241)
T ss_pred CchhhhHHHHHHHHHHhcCCEEEEeCCCCCHH
Confidence 34456788999999987 79999999999865
No 43
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.07 E-value=17 Score=37.49 Aligned_cols=51 Identities=22% Similarity=0.438 Sum_probs=27.5
Q ss_pred hcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCC-----CCCCCCCCe
Q psy8970 121 RSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY-----RGFRPCRGT 177 (258)
Q Consensus 121 kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~-----~~c~~Cgg~ 177 (258)
|-|+ ...+.+|=.=+..+|++|+-.+........+ .+..|.. ..||.||+.
T Consensus 429 RRGy--s~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L----~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 429 RRGY--APLLLCRDCGYIAECPNCDSPLTLHKATGQL----RCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred cCCc--cceeecccCCCcccCCCCCcceEEecCCCee----EeCCCCCCCCCCCCCCCCCCC
Confidence 4455 3466677666777777776544332221111 1233432 247799986
No 44
>PRK06260 threonine synthase; Validated
Probab=60.59 E-value=5.3 Score=37.85 Aligned_cols=31 Identities=26% Similarity=0.669 Sum_probs=21.4
Q ss_pred eecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecce
Q psy8970 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDT 181 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~ 181 (258)
..++|..|+++|+.+.. ...|| .||++|...
T Consensus 2 ~~~~C~~cg~~~~~~~~---------~~~Cp-----~cg~~l~~~ 32 (397)
T PRK06260 2 YWLKCIECGKEYDPDEI---------IYTCP-----ECGGLLEVI 32 (397)
T ss_pred CEEEECCCCCCCCCCCc---------cccCC-----CCCCeEEEE
Confidence 45899999998864422 23576 899887543
No 45
>KOG4166|consensus
Probab=60.09 E-value=12 Score=36.45 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCC
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGI 61 (258)
++..+..|++++++|+.||+-|++.|+|+=..+--
T Consensus 281 ~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~ 315 (675)
T KOG4166|consen 281 EDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDG 315 (675)
T ss_pred hhhHHHHHHHHHHHHHhccCceEEeCcccccCCcc
Confidence 45578999999999999999999999999777653
No 46
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=59.93 E-value=5.7 Score=25.75 Aligned_cols=29 Identities=21% Similarity=0.556 Sum_probs=18.6
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCee
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL 178 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~l 178 (258)
..+|.+||..+..+... ....|| .||+.+
T Consensus 3 ~y~C~~CG~~~~~~~~~-------~~~~Cp-----~CG~~~ 31 (46)
T PRK00398 3 EYKCARCGREVELDEYG-------TGVRCP-----YCGYRI 31 (46)
T ss_pred EEECCCCCCEEEECCCC-------CceECC-----CCCCeE
Confidence 46899999887654321 133566 898743
No 47
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=58.00 E-value=5.1 Score=30.29 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.5
Q ss_pred hCCcEEEEeCCccCcc
Q psy8970 43 KAKHVVLHTGAGISTS 58 (258)
Q Consensus 43 ~a~~ivv~tGAGiS~~ 58 (258)
+.++|++++|+|+|++
T Consensus 2 ~~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 2 NETNILLLCAAGMSTS 17 (95)
T ss_pred CccEEEEECCCchhHH
Confidence 3578999999999965
No 48
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=57.58 E-value=15 Score=33.92 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=37.1
Q ss_pred HHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEeccC
Q psy8970 36 VLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNI 115 (258)
Q Consensus 36 ~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNI 115 (258)
.+..+|. ...+||.+|.| |||.+.+.+.++..+. +.+..--.+ .++...+ -...|+=++|
T Consensus 174 ~I~~LL~-~G~iVI~~ggg-----giPvi~e~~~~~g~e~----------~id~D~lAa--~lA~~l~--AD~LIiLTDV 233 (310)
T TIGR00746 174 TIKTLVE-NGVIVISSGGG-----GVPVVLEGAELKGVEA----------VIDKDLASE--KLAEEVN--ADILVILTDV 233 (310)
T ss_pred HHHHHHH-CCCEEEeCCCC-----CcCEEecCCeEEeeEe----------cCCHHHHHH--HHHHHhC--CCEEEEEeCC
Confidence 3334444 56788888877 8999987554432211 111111122 2333333 3445777789
Q ss_pred cchHhhcC
Q psy8970 116 DGLHLRSG 123 (258)
Q Consensus 116 DgLh~kAG 123 (258)
||++..-+
T Consensus 234 dGVy~~~~ 241 (310)
T TIGR00746 234 DAVYINYG 241 (310)
T ss_pred CceeCCCC
Confidence 99986533
No 49
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=55.59 E-value=5.5 Score=30.78 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.2
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
++|++++|+|+|++
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 57999999999876
No 50
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=55.52 E-value=9.7 Score=29.23 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 33 KIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 33 ~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
.++++++.|.++++ |+++|.|-|...+
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~~~a 28 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSGLVA 28 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchHHHH
Confidence 47899999999976 5888999887654
No 51
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=54.58 E-value=7.5 Score=40.99 Aligned_cols=39 Identities=26% Similarity=0.529 Sum_probs=28.8
Q ss_pred cccccee-----ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEE
Q psy8970 131 ELHGNMY-----VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTIL 183 (258)
Q Consensus 131 elHGsl~-----~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv 183 (258)
-|-||++ .+||++|+..|-+-.+ ...|+ +|||.+-++|-
T Consensus 1000 Dl~GNLRaFsrQ~fRC~kC~~kYRR~PL---------~G~C~-----kCGg~lilTV~ 1043 (1095)
T TIGR00354 1000 DIIGNLRAFSRQEVRCTKCNTKYRRIPL---------VGKCL-----KCGNNLTLTVS 1043 (1095)
T ss_pred HhhhhHhhhhccceeecccCCccccCCC---------CCccc-----ccCCeEEEEEe
Confidence 5679987 4699999998865432 34576 99998877763
No 52
>PF13289 SIR2_2: SIR2-like domain
Probab=54.25 E-value=6.2 Score=30.89 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=12.9
Q ss_pred EEEeccCcchHhhc
Q psy8970 109 YVVSQNIDGLHLRS 122 (258)
Q Consensus 109 ~viTQNIDgLh~kA 122 (258)
.|||+|.|.|.++|
T Consensus 2 ~iiTtNyD~llE~a 15 (143)
T PF13289_consen 2 TIITTNYDDLLEKA 15 (143)
T ss_pred EEEECCHhHHHHHH
Confidence 69999999999987
No 53
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=54.01 E-value=25 Score=27.10 Aligned_cols=35 Identities=43% Similarity=0.645 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC---------CCCCCCC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG---------IPDFRGP 67 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG---------IPdFR~~ 67 (258)
.+++++++..- +.++||+-||-=.-+|| =|+|-||
T Consensus 7 ~rvk~~aek~g-~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGP 50 (107)
T PRK14717 7 KRIKELAEKYG-AENIVVILGAAEAEAAGLAAETVTNGDPTFAGP 50 (107)
T ss_pred HHHHHHHHhcC-CccEEEEecCcchhhccceeeeeccCCCccccc
Confidence 34555555443 56788887764444444 4999998
No 54
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=53.78 E-value=35 Score=31.36 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=48.9
Q ss_pred HHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEeccC
Q psy8970 36 VLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNI 115 (258)
Q Consensus 36 ~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNI 115 (258)
+..++|-++.++||.+|.| |||..+..+|+-..+.- .+. .| +-..|+++. .-+.++|.+.+
T Consensus 175 ~~Ik~L~~~g~vVI~~GGG-----GIPVv~~~~~~~GVeAV-IDK----Dl-------asalLA~~i--~AD~liILTdV 235 (312)
T COG0549 175 EAIKALLESGHVVIAAGGG-----GIPVVEEGAGLQGVEAV-IDK----DL-------ASALLAEQI--DADLLIILTDV 235 (312)
T ss_pred HHHHHHHhCCCEEEEeCCC-----CcceEecCCCcceeeEE-Ecc----HH-------HHHHHHHHh--cCCEEEEEecc
Confidence 5566667789999999998 99999998883322221 111 11 223344444 34567999999
Q ss_pred cchHhhcCCCcc
Q psy8970 116 DGLHLRSGLSRK 127 (258)
Q Consensus 116 DgLh~kAG~~~~ 127 (258)
|+.+..-|-|.+
T Consensus 236 d~Vy~n~gkp~q 247 (312)
T COG0549 236 DAVYVNFGKPNQ 247 (312)
T ss_pred chheecCCCccc
Confidence 999988887644
No 55
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=53.35 E-value=10 Score=23.49 Aligned_cols=33 Identities=18% Similarity=0.558 Sum_probs=19.1
Q ss_pred cccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCee
Q psy8970 139 DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL 178 (258)
Q Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~l 178 (258)
.+|++|+..|..++. .+......-+|+ +|+...
T Consensus 3 i~CP~C~~~f~v~~~--~l~~~~~~vrC~-----~C~~~f 35 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDD--KLPAGGRKVRCP-----KCGHVF 35 (37)
T ss_pred EECCCCCceEEcCHH--HcccCCcEEECC-----CCCcEe
Confidence 589999988765542 222222223465 887653
No 56
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=53.00 E-value=13 Score=31.05 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCcEEEEeCCccC
Q psy8970 35 KVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 35 ~~la~~i~~a~~ivv~tGAGiS 56 (258)
++++++|++|++.+++.|.|+.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcC
Confidence 5788999999999999999986
No 57
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=52.93 E-value=3.8 Score=38.10 Aligned_cols=41 Identities=22% Similarity=0.620 Sum_probs=29.9
Q ss_pred cccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEE
Q psy8970 132 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTIL 183 (258)
Q Consensus 132 lHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv 183 (258)
.-|.++..-|+.|...|..++... ...+|| +|||.++-.|.
T Consensus 240 ~LGKY~~TAC~rC~t~y~le~A~~------~~wrCp-----kCGg~ikKGV~ 280 (403)
T COG1379 240 RLGKYHLTACSRCYTRYSLEEAKS------LRWRCP-----KCGGKIKKGVS 280 (403)
T ss_pred cccchhHHHHHHhhhccCcchhhh------hcccCc-----ccccchhhhHH
Confidence 347788899999999887665431 134677 99998887664
No 58
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=52.49 E-value=11 Score=22.75 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=10.1
Q ss_pred cccCCcccccchh
Q psy8970 139 DQCNKCERQFVRK 151 (258)
Q Consensus 139 ~~C~~C~~~~~~~ 151 (258)
++|..||..|..+
T Consensus 2 ~~C~~CGy~y~~~ 14 (33)
T cd00350 2 YVCPVCGYIYDGE 14 (33)
T ss_pred EECCCCCCEECCC
Confidence 6899999887643
No 59
>PRK05858 hypothetical protein; Provisional
Probab=52.47 E-value=18 Score=35.69 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=21.8
Q ss_pred cCCCCChHHHHHHHHHhccCCEEEEEecCce
Q psy8970 185 WEHNLPQKDINMGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 185 fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~ 215 (258)
|.|.+|...-..+.+.++++|++|++||++.
T Consensus 244 ~~~~hpl~~~~~~~~~l~~aD~vl~vG~~~~ 274 (542)
T PRK05858 244 VPADHPLAFSRARGKALGEADVVLVVGVPMD 274 (542)
T ss_pred CCCCCchhhhHHHHHHHHhCCEEEEECCCCc
Confidence 4555554433445677889999999999774
No 60
>PRK04023 DNA polymerase II large subunit; Validated
Probab=51.71 E-value=8.9 Score=40.69 Aligned_cols=39 Identities=33% Similarity=0.686 Sum_probs=29.1
Q ss_pred ccccceee-----cccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEE
Q psy8970 131 ELHGNMYV-----DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTIL 183 (258)
Q Consensus 131 elHGsl~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv 183 (258)
-|-||++. +||++|+..|-+-.+ ...|+ +|||.+-++|-
T Consensus 1025 Dl~GNLRaFsrQ~fRC~kC~~kYRR~PL---------~G~C~-----kCGg~lilTVh 1068 (1121)
T PRK04023 1025 DLIGNLRAFSRQEFRCTKCGAKYRRPPL---------SGKCP-----KCGGNLILTVH 1068 (1121)
T ss_pred hhhhhhhhhcccceeecccCcccccCCC---------CCcCc-----cCCCeEEEEEe
Confidence 56699874 699999999865432 34576 99998887773
No 61
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=51.16 E-value=7.2 Score=28.33 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=11.0
Q ss_pred cEEEEeCCccCcc
Q psy8970 46 HVVLHTGAGISTS 58 (258)
Q Consensus 46 ~ivv~tGAGiS~~ 58 (258)
+|++.+|+|+|++
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5888999999876
No 62
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=49.91 E-value=12 Score=22.77 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=10.2
Q ss_pred ecccCCcccccch
Q psy8970 138 VDQCNKCERQFVR 150 (258)
Q Consensus 138 ~~~C~~C~~~~~~ 150 (258)
.++|..||..+..
T Consensus 2 ~~~C~~CG~i~~g 14 (34)
T cd00729 2 VWVCPVCGYIHEG 14 (34)
T ss_pred eEECCCCCCEeEC
Confidence 4789999987654
No 63
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=49.79 E-value=11 Score=31.11 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=19.5
Q ss_pred eeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCe
Q psy8970 136 MYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~ 177 (258)
....+|.+||+....... ...|+|| +||+.
T Consensus 110 ~G~l~C~~Cg~~~~~~~~-------~~l~~Cp-----~C~~~ 139 (146)
T PF07295_consen 110 PGTLVCENCGHEVELTHP-------ERLPPCP-----KCGHT 139 (146)
T ss_pred CceEecccCCCEEEecCC-------CcCCCCC-----CCCCC
Confidence 456799999987554321 1245677 89864
No 64
>PRK08322 acetolactate synthase; Reviewed
Probab=49.76 E-value=19 Score=35.30 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=16.1
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|++||++.
T Consensus 256 ~~~~l~~aDlil~lG~~l~ 274 (547)
T PRK08322 256 VHCAIEHADLIINVGHDVI 274 (547)
T ss_pred HHHHHHhCCEEEEECCCCc
Confidence 5567889999999999875
No 65
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=49.61 E-value=9.8 Score=41.29 Aligned_cols=39 Identities=28% Similarity=0.537 Sum_probs=28.9
Q ss_pred cccccee-----ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEE
Q psy8970 131 ELHGNMY-----VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTIL 183 (258)
Q Consensus 131 elHGsl~-----~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv 183 (258)
-|-||++ .+||++|+..|-+-.+ ...|+ +|||.+-++|-
T Consensus 1241 Dl~GNLraFsrQ~~RC~kC~~kyRR~PL---------~G~C~-----kCGg~iilTv~ 1284 (1337)
T PRK14714 1241 DLIGNLRAFSRQEFRCLKCGTKYRRMPL---------AGKCR-----KCGGRIILTVH 1284 (1337)
T ss_pred hhhhhhhhhhccceeecccCcccccCCC---------CCccc-----ccCCeEEEEEe
Confidence 5679997 4699999998865432 34576 99998877763
No 66
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=49.28 E-value=18 Score=35.84 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=16.9
Q ss_pred HHHHHhccCCEEEEEecCcee
Q psy8970 196 MGDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V 216 (258)
.+.+.+++||++|+|||++..
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~ 285 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDD 285 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcc
Confidence 355678899999999998743
No 67
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=49.13 E-value=19 Score=35.48 Aligned_cols=27 Identities=15% Similarity=-0.053 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.++.+++++++|++||+.|++.|.|+.
T Consensus 191 ~~~~i~~a~~~L~~AkrPvil~G~g~~ 217 (539)
T TIGR03393 191 LRAFRDAAENKLAMAKRVSLLADFLAL 217 (539)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeChhhc
Confidence 355689999999999999999999985
No 68
>PRK07524 hypothetical protein; Provisional
Probab=49.04 E-value=17 Score=35.64 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||++|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 188 PAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCChH
Confidence 46799999999999999999999985
No 69
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=48.85 E-value=18 Score=36.12 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.++.+++++++|++|++.||+.|.|+.
T Consensus 194 ~~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 194 YDEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECcchH
Confidence 356799999999999999999999985
No 70
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=48.79 E-value=10 Score=29.28 Aligned_cols=14 Identities=50% Similarity=0.693 Sum_probs=12.4
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
++|.++++||+||+
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 57999999999976
No 71
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=48.40 E-value=18 Score=35.61 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=26.7
Q ss_pred HHHHHhccCCEEEEEecCceeE---------EEEcCCCCCCCC--cccEEEEe
Q psy8970 196 MGDYNSSIADLSICLGKCLLSF---------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V~---------v~iN~~~t~~d~--~adl~i~~ 237 (258)
.+.+.+++||++|++||++... |.||.++....+ ..++.|.+
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~ 304 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVNFLNKSAKVIQVDIDNSNIGKRLDVDLSYPI 304 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhhcCCCCCcEEEEeCCHHHhCCCCCCCeEEec
Confidence 3556778999999999998542 555555544332 34455443
No 72
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=48.35 E-value=19 Score=35.86 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=16.2
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|+|||++.
T Consensus 274 ~~~~l~~aDlil~vG~~~~ 292 (570)
T PRK06725 274 ANMAVTECDLLLALGVRFD 292 (570)
T ss_pred HHHHHHhCCEEEEeCCCCC
Confidence 5567889999999999874
No 73
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=48.21 E-value=9.2 Score=28.82 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=11.2
Q ss_pred cEEEEeCCccCcc
Q psy8970 46 HVVLHTGAGISTS 58 (258)
Q Consensus 46 ~ivv~tGAGiS~~ 58 (258)
+|++++|+|+|++
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4889999999876
No 74
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=48.08 E-value=19 Score=29.81 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCCcEEEEe
Q psy8970 33 KIKVLSEWIDKAKHVVLHT 51 (258)
Q Consensus 33 ~l~~la~~i~~a~~ivv~t 51 (258)
.++.+.++|++|++|+|+|
T Consensus 135 Tid~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 135 TIDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp SHHHHHHHHHH-SSEEEEE
T ss_pred cHHHHHHHHHhcCceEEeC
Confidence 4889999999999999998
No 75
>PRK11032 hypothetical protein; Provisional
Probab=48.06 E-value=12 Score=31.36 Aligned_cols=30 Identities=20% Similarity=0.463 Sum_probs=19.1
Q ss_pred eeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCe
Q psy8970 136 MYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~ 177 (258)
+..++|.+||+....... ...|+|| +||+.
T Consensus 122 ~G~LvC~~Cg~~~~~~~p-------~~i~pCp-----~C~~~ 151 (160)
T PRK11032 122 LGNLVCEKCHHHLAFYTP-------EVLPLCP-----KCGHD 151 (160)
T ss_pred cceEEecCCCCEEEecCC-------CcCCCCC-----CCCCC
Confidence 456899999987543221 2246677 89853
No 76
>PRK07591 threonine synthase; Validated
Probab=47.93 E-value=12 Score=35.77 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=22.0
Q ss_pred eeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecce
Q psy8970 136 MYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDT 181 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~ 181 (258)
+..++|..|+++|+.+. ...|+ .|||+|...
T Consensus 16 ~~~l~C~~Cg~~~~~~~----------~~~C~-----~cg~~l~~~ 46 (421)
T PRK07591 16 AVALKCRECGAEYPLGP----------IHVCE-----ECFGPLEVA 46 (421)
T ss_pred eeEEEeCCCCCcCCCCC----------CccCC-----CCCCeEEEE
Confidence 45689999999886431 13576 899988643
No 77
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=47.81 E-value=9.8 Score=29.36 Aligned_cols=14 Identities=57% Similarity=0.795 Sum_probs=12.3
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
++|++++|+|+|++
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 57999999999976
No 78
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=47.68 E-value=19 Score=35.60 Aligned_cols=22 Identities=14% Similarity=0.068 Sum_probs=17.3
Q ss_pred HHHHHhccCCEEEEEecCceeE
Q psy8970 196 MGDYNSSIADLSICLGKCLLSF 217 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V~ 217 (258)
.+.+.+++||++|+|||++...
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~ 286 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDR 286 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCcc
Confidence 3556788999999999987443
No 79
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=47.39 E-value=51 Score=30.43 Aligned_cols=69 Identities=22% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEeccC
Q psy8970 36 VLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNI 115 (258)
Q Consensus 36 ~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNI 115 (258)
++.+.+-+...|+|++|-| |||-|...+.++..+. +.+..-..++.+ ... +-...++-++|
T Consensus 172 ~~I~~Ll~~g~IpI~~Ggg-----GiPv~~~~~~~~gvea----------Vid~D~~AallA--~~l--~Ad~LiilTdV 232 (308)
T cd04235 172 EAIKTLVDNGVIVIAAGGG-----GIPVVREGGGLKGVEA----------VIDKDLASALLA--EEI--NADLLVILTDV 232 (308)
T ss_pred HHHHHHHHCCCEEEEECCC-----ccCEEEcCCceeeeee----------ccCccHHHHHHH--HHc--CCCEEEEEecC
Confidence 3444445578899999887 9999987543332211 112222233333 222 33445666699
Q ss_pred cchHhhcC
Q psy8970 116 DGLHLRSG 123 (258)
Q Consensus 116 DgLh~kAG 123 (258)
||++..-+
T Consensus 233 dGVy~~~~ 240 (308)
T cd04235 233 DNVYINFG 240 (308)
T ss_pred CeEECCCC
Confidence 99987543
No 80
>PRK13936 phosphoheptose isomerase; Provisional
Probab=47.36 E-value=24 Score=30.07 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
+.+++.++.+++.|.++++|.++ |.|-|..
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~-G~G~S~~ 56 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC-GNGGSAA 56 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE-eCcHhHH
Confidence 44667788888888888888665 9998754
No 81
>PRK08611 pyruvate oxidase; Provisional
Probab=46.70 E-value=22 Score=35.31 Aligned_cols=40 Identities=15% Similarity=-0.013 Sum_probs=26.1
Q ss_pred HHHHhccCCEEEEEecCceeE---------EEEcCCCCCCCC--cccEEEE
Q psy8970 197 GDYNSSIADLSICLGKCLLSF---------LKCFFRKTKQNN--NTNLCGR 236 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V~---------v~iN~~~t~~d~--~adl~i~ 236 (258)
+.+.++++|++|+|||++... |.||.++...++ ..++.|.
T Consensus 261 a~~~l~~aDlvl~iG~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~ 311 (576)
T PRK08611 261 AYEAMQEADLLIMVGTNYPYVDYLPKKAKAIQIDTDPANIGKRYPVNVGLV 311 (576)
T ss_pred HHHHHHhCCEEEEeCCCCCccccCCCCCcEEEEeCCHHHcCCccCCCeeEe
Confidence 456778999999999988431 566665544332 3455554
No 82
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=46.66 E-value=28 Score=29.16 Aligned_cols=41 Identities=32% Similarity=0.505 Sum_probs=30.7
Q ss_pred CCCh-HHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccc
Q psy8970 24 FDSK-EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTL 73 (258)
Q Consensus 24 ~~~~-~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~ 73 (258)
+|+. +.+.+.-++|++.++.++.++++.|+- -|||. |+|..
T Consensus 99 tdPkG~~is~vk~~L~~~~r~~~eV~v~iGSR----eGiP~-----GlfRf 140 (173)
T PF14419_consen 99 TDPKGDPISEVKDKLAEDLRYAKEVVVFIGSR----EGIPR-----GLFRF 140 (173)
T ss_pred ECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcc----cCCCh-----hHHHH
Confidence 3443 445667789999999999999999986 57765 56653
No 83
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.59 E-value=21 Score=35.75 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=16.0
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|+|||++.
T Consensus 274 ~~~~l~~aDlvL~lG~~~~ 292 (595)
T PRK09107 274 ANMAMHDCDVMLCVGARFD 292 (595)
T ss_pred HHHHHHhCCEEEEECCCCC
Confidence 5567789999999999874
No 84
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.50 E-value=20 Score=35.74 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|++|++.||+.|.|+..
T Consensus 208 ~~~i~~~~~~L~~AkrPvil~G~g~~~ 234 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPYIYTGGGVIL 234 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 467999999999999999999999963
No 85
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=46.29 E-value=20 Score=35.68 Aligned_cols=42 Identities=17% Similarity=0.016 Sum_probs=28.3
Q ss_pred HHHHHhccCCEEEEEecCceeE--------EEEcCCCCCCCC--cccEEEEe
Q psy8970 196 MGDYNSSIADLSICLGKCLLSF--------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V~--------v~iN~~~t~~d~--~adl~i~~ 237 (258)
.+.+.+++|||+|+|||++... |.||.++....+ ..++.|.+
T Consensus 258 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~I~vd~d~~~~~~~~~~~~~i~~ 309 (578)
T PRK06546 258 AAHEAMHEADLLILLGTDFPYDQFLPDVRTAQVDIDPEHLGRRTRVDLAVHG 309 (578)
T ss_pred HHHHHHHhCCEEEEEcCCCChhhcCCCCcEEEEeCCHHHhCCCCCCCeEEEc
Confidence 3556788999999999997642 666766655433 34555543
No 86
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=46.22 E-value=21 Score=35.44 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
++.+++++++|.+|++.||+.|.|+..+
T Consensus 193 ~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 193 KGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 4679999999999999999999999644
No 87
>PLN02470 acetolactate synthase
Probab=46.14 E-value=22 Score=35.39 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.1
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|+|||++.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~ 291 (585)
T PLN02470 273 ANYAVDSADLLLAFGVRFD 291 (585)
T ss_pred HHHHHHhCCEEEEECCCCc
Confidence 4567889999999999874
No 88
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=46.13 E-value=21 Score=35.64 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.+|+.|.|+-
T Consensus 204 ~~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 204 IKRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCc
Confidence 45789999999999999999999995
No 89
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.82 E-value=21 Score=35.45 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=17.0
Q ss_pred HHHHHhccCCEEEEEecCcee
Q psy8970 196 MGDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V 216 (258)
.+.+.+++||++|+|||++..
T Consensus 265 ~~~~~~~~aD~vl~vG~~~~~ 285 (572)
T PRK08979 265 EANMAMHNADLIFGIGVRFDD 285 (572)
T ss_pred HHHHHHHhCCEEEEEcCCCCc
Confidence 356677899999999998743
No 90
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=45.75 E-value=21 Score=35.73 Aligned_cols=21 Identities=24% Similarity=0.142 Sum_probs=17.3
Q ss_pred HHHHHhccCCEEEEEecCcee
Q psy8970 196 MGDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V 216 (258)
.+.+.+++||++|++||++..
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~ 310 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDD 310 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCc
Confidence 356778899999999998754
No 91
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=45.46 E-value=21 Score=35.16 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.3
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++||++|++||++.
T Consensus 255 ~~~~~l~~aD~vl~lG~~~~ 274 (548)
T PRK08978 255 AANLAVQECDLLIAVGARFD 274 (548)
T ss_pred HHHHHHHhCCEEEEEcCCCC
Confidence 35567789999999999874
No 92
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=45.36 E-value=23 Score=35.41 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|.+|++.||++|.|+..
T Consensus 189 ~~~i~~~~~~L~~AkrPvIl~G~g~~~ 215 (588)
T TIGR01504 189 RAQIEKAVEMLNAAERPLIVAGGGVIN 215 (588)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcch
Confidence 457999999999999999999999874
No 93
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=45.33 E-value=22 Score=35.25 Aligned_cols=20 Identities=30% Similarity=0.301 Sum_probs=16.3
Q ss_pred HHHHhccCCEEEEEecCcee
Q psy8970 197 GDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V 216 (258)
+.+.+++||++|+|||++..
T Consensus 263 ~~~~l~~aD~vl~lG~~l~~ 282 (563)
T PRK08527 263 ANMAMSECDLLISLGARFDD 282 (563)
T ss_pred HHHHHHhCCEEEEeCCCCCc
Confidence 45677899999999998753
No 94
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=45.13 E-value=26 Score=27.05 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCccccccc--ccceeecccCCcccccchh
Q psy8970 89 AVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAEL--HGNMYVDQCNKCERQFVRK 151 (258)
Q Consensus 89 ~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~el--HGsl~~~~C~~C~~~~~~~ 151 (258)
..++..++.|..|++.|.+..+-+.|=- ..+++ +..-.++.|..||+....+
T Consensus 40 is~~TVYR~L~~L~e~Gli~~~~~~~~~-----------~~Y~~~~~~~h~h~iC~~Cg~v~~~~ 93 (120)
T PF01475_consen 40 ISLATVYRTLDLLEEAGLIRKIEFGDGE-----------SRYELSTCHHHHHFICTQCGKVIDLD 93 (120)
T ss_dssp --HHHHHHHHHHHHHTTSEEEEEETTSE-----------EEEEESSSSSCEEEEETTTS-EEEE-
T ss_pred cCHHHHHHHHHHHHHCCeEEEEEcCCCc-----------ceEeecCCCcceEEEECCCCCEEEec
Confidence 3445679999999999988766544221 22222 3455669999999876544
No 95
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=45.08 E-value=21 Score=35.49 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|+.
T Consensus 187 ~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 187 VEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchh
Confidence 45799999999999999999999996
No 96
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=45.06 E-value=21 Score=35.34 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.+|+.|.|+-
T Consensus 200 ~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 200 PEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 46799999999999999999999985
No 97
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=44.80 E-value=22 Score=35.51 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=15.9
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|++|++|.
T Consensus 263 a~~~l~~aD~iL~lG~~l~ 281 (588)
T TIGR01504 263 GNATLLESDFVFGIGNRWA 281 (588)
T ss_pred HHHHHHhCCEEEEECCCCC
Confidence 4566789999999999874
No 98
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=44.75 E-value=23 Score=35.48 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|.+|++.+|+.|.|+..
T Consensus 218 ~~~i~~~~~~L~~AkrPlIl~G~g~~~ 244 (612)
T PRK07789 218 GKQIREAAKLIAAARRPVLYVGGGVIR 244 (612)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 456899999999999999999999953
No 99
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=44.67 E-value=23 Score=35.53 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.6
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++||++|+|||++.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~ 302 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFD 302 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCC
Confidence 35567889999999999875
No 100
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=44.48 E-value=11 Score=22.82 Aligned_cols=11 Identities=27% Similarity=0.561 Sum_probs=7.9
Q ss_pred CCCCC-Ceecce
Q psy8970 171 FRPCR-GTLHDT 181 (258)
Q Consensus 171 c~~Cg-g~lrP~ 181 (258)
||+|| |.|.|.
T Consensus 4 cpkcgvgvl~pv 15 (36)
T PF09151_consen 4 CPKCGVGVLEPV 15 (36)
T ss_dssp -TTTSSSBEEEE
T ss_pred CCccCceEEEEe
Confidence 45999 888774
No 101
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=44.30 E-value=23 Score=35.14 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|++|++.+|++|.|+..
T Consensus 183 ~~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 183 ATSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 356889999999999999999999864
No 102
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=43.92 E-value=26 Score=34.62 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=16.4
Q ss_pred HHHHhccCCEEEEEecCcee
Q psy8970 197 GDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V 216 (258)
+.+.+++||++|++|+++..
T Consensus 271 ~~~~l~~aDlvl~lG~~~~~ 290 (564)
T PRK08155 271 TNYILQEADLLIVLGARFDD 290 (564)
T ss_pred HHHHHHhCCEEEEECCCCCc
Confidence 45667899999999998754
No 103
>PRK07586 hypothetical protein; Validated
Probab=43.83 E-value=22 Score=34.59 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|++|++.||+.|.|+..
T Consensus 184 ~~~v~~~~~~L~~A~rPvi~~G~g~~~ 210 (514)
T PRK07586 184 PAAVEAAAAALRSGEPTVLLLGGRALR 210 (514)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCcccc
Confidence 457899999999999999999999863
No 104
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=43.75 E-value=14 Score=24.73 Aligned_cols=29 Identities=24% Similarity=0.663 Sum_probs=18.0
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCee
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL 178 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~l 178 (258)
.-.|..|++++.... ...+.+|| .||..+
T Consensus 6 ~Y~C~~Cg~~~~~~~-------~~~~irCp-----~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-------ETRGIRCP-----YCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-------ccCceeCC-----CCCcEE
Confidence 357999999873221 11245677 899654
No 105
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=43.43 E-value=27 Score=28.93 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.+.+++++++|.+|++ |++.|-|-|..
T Consensus 20 ~~~l~~~~~~i~~a~~-I~i~G~G~S~~ 46 (179)
T cd05005 20 EEELDKLISAILNAKR-IFVYGAGRSGL 46 (179)
T ss_pred HHHHHHHHHHHHhCCe-EEEEecChhHH
Confidence 3568899999999987 57788898754
No 106
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=43.25 E-value=12 Score=21.23 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=7.9
Q ss_pred ecccCCccccc
Q psy8970 138 VDQCNKCERQF 148 (258)
Q Consensus 138 ~~~C~~C~~~~ 148 (258)
...|++|++..
T Consensus 2 ~~~Cp~Cg~~~ 12 (26)
T PF13248_consen 2 EMFCPNCGAEI 12 (26)
T ss_pred cCCCcccCCcC
Confidence 35789998753
No 107
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=43.21 E-value=23 Score=35.47 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++||+.||+.|.|..
T Consensus 211 ~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 211 PRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 45799999999999999999999995
No 108
>PRK13937 phosphoheptose isomerase; Provisional
Probab=42.98 E-value=31 Score=29.03 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
+.+++..++++++|+++++| ++.|.|-|..
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI-~i~G~G~S~~ 51 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKI-LLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEE-EEEeCcHhHH
Confidence 56777888888999988885 7889999853
No 109
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.86 E-value=25 Score=34.86 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=16.9
Q ss_pred HHHHHhccCCEEEEEecCcee
Q psy8970 196 MGDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V 216 (258)
.+.+.+++||++|++||++..
T Consensus 265 ~~~~~l~~aD~il~vG~~~~~ 285 (574)
T PRK06466 265 EANMAMHHADVILAVGARFDD 285 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCc
Confidence 345677899999999998754
No 110
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.73 E-value=24 Score=34.97 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|+.
T Consensus 193 ~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 193 KGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 45789999999999999999999985
No 111
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=42.68 E-value=24 Score=34.95 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
...+++++++|.+|++.||+.|.|+.
T Consensus 200 ~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 200 PQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 45688999999999999999999975
No 112
>PRK06154 hypothetical protein; Provisional
Probab=42.68 E-value=25 Score=34.88 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.+.+++++++|.+|++.+|+.|.|+..+
T Consensus 201 ~~~i~~aa~~L~~A~rPvil~G~g~~~~ 228 (565)
T PRK06154 201 PVEVVEAAALLLAAERPVIYAGQGVLYA 228 (565)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcccc
Confidence 3569999999999999999999999744
No 113
>PRK12352 putative carbamate kinase; Reviewed
Probab=42.57 E-value=28 Score=32.29 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=40.2
Q ss_pred HHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEeccC
Q psy8970 36 VLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNI 115 (258)
Q Consensus 36 ~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNI 115 (258)
++.+.+-++..||+.+|.| |||-.++..|-+......- ++. .+=..||...+. ...|+=+++
T Consensus 177 ~~I~~ll~~g~iVi~~ggg-----giPv~~~~~g~~~n~~~nI---------naD--~aAa~iA~aL~A--dkLI~LTDV 238 (316)
T PRK12352 177 PAIKALIQQGFVVIGAGGG-----GIPVVRTDAGDYQSVDAVI---------DKD--LSTALLAREIHA--DILVITTGV 238 (316)
T ss_pred HHHHHHHHCCCEEEecCCC-----CCCEEeCCCCCccCceeee---------cHH--HHHHHHHHHhCC--CEEEEEeCc
Confidence 4455555678899999888 9999887765432111101 111 111223443433 346788899
Q ss_pred cchHhhcC
Q psy8970 116 DGLHLRSG 123 (258)
Q Consensus 116 DgLh~kAG 123 (258)
||+...-+
T Consensus 239 ~GV~~d~~ 246 (316)
T PRK12352 239 EKVCIHFG 246 (316)
T ss_pred hhhccCCC
Confidence 99986543
No 114
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.54 E-value=25 Score=28.97 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.+++++++++|.++++ |++.|.|.|..
T Consensus 17 ~~~~~~~~~~l~~a~~-I~i~G~G~S~~ 43 (179)
T TIGR03127 17 EEELDKLADKIIKAKR-IFVAGAGRSGL 43 (179)
T ss_pred HHHHHHHHHHHHhCCE-EEEEecCHHHH
Confidence 3578899999999986 67888887743
No 115
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=42.37 E-value=27 Score=34.77 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|++|++.||+.|.|+..
T Consensus 201 ~~~~~~~~~~L~~A~rPvIl~G~g~~~ 227 (570)
T PRK06725 201 SMKLREVAKAISKAKRPLLYIGGGVIH 227 (570)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCccc
Confidence 356889999999999999999999954
No 116
>PRK11269 glyoxylate carboligase; Provisional
Probab=42.30 E-value=26 Score=34.88 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
..+.+++++++|.+|++.+|+.|.|+..
T Consensus 189 ~~~~i~~~~~~L~~AkrPvil~G~g~~~ 216 (591)
T PRK11269 189 TRAQIEKALEMLNAAERPLIVAGGGVIN 216 (591)
T ss_pred CHHHHHHHHHHHHhCCCcEEEECCCCcc
Confidence 3457889999999999999999999853
No 117
>PLN02470 acetolactate synthase
Probab=42.16 E-value=25 Score=35.06 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 202 ~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 202 KSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCChh
Confidence 45799999999999999999999985
No 118
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=41.75 E-value=27 Score=34.60 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
...+++++++|.+|++.||+.|.|+..
T Consensus 197 ~~~i~~~~~~L~~A~rPvil~G~g~~~ 223 (566)
T PRK07282 197 DMQIKKILKQLSKAKKPVILAGGGINY 223 (566)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcCc
Confidence 456899999999999999999999953
No 119
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=41.52 E-value=26 Score=34.51 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=20.5
Q ss_pred cCCCCChHHHHHHHHHhccCCEEEEEecCce
Q psy8970 185 WEHNLPQKDINMGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 185 fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~ 215 (258)
|.|.+|-..=..+.+.+++|||+|++||++.
T Consensus 247 ~p~~hp~~~g~~~~~~~~~aDlvl~lG~~~~ 277 (554)
T TIGR03254 247 LPDTHPQSAAAARSFALAEADVVMLVGARLN 277 (554)
T ss_pred CCCCCchhhhHHHHHHHhcCCEEEEECCCCc
Confidence 4455543222234457889999999999874
No 120
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=41.36 E-value=35 Score=33.65 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
....+.+++++++|++|++.+++.|.|+..
T Consensus 185 ~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~ 214 (535)
T TIGR03394 185 DALDACADEVLARMRSATSPVMMVCVEVRR 214 (535)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEChhhcc
Confidence 345677999999999999999999999863
No 121
>PLN02573 pyruvate decarboxylase
Probab=41.33 E-value=28 Score=34.73 Aligned_cols=29 Identities=21% Similarity=0.425 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.+..+++++++|++|++.||+.|.|+..+
T Consensus 210 ~~~~~~~a~~~L~~AkrPvil~G~g~~~~ 238 (578)
T PLN02573 210 LEAAVEAAAEFLNKAVKPVLVGGPKLRVA 238 (578)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhccc
Confidence 45679999999999999999999999643
No 122
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=41.33 E-value=26 Score=31.04 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
+++++++++|.+|++ |++.|.|.|...
T Consensus 116 ~~l~~~~~~i~~a~~-I~i~G~G~s~~~ 142 (278)
T PRK11557 116 EKLHECVTMLRSARR-IILTGIGASGLV 142 (278)
T ss_pred HHHHHHHHHHhcCCe-EEEEecChhHHH
Confidence 578889999999998 577888877543
No 123
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=41.07 E-value=27 Score=34.90 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|.+|++.||+.|.|+..
T Consensus 199 ~~~l~~a~~~L~~A~rPvil~G~g~~~ 225 (595)
T PRK09107 199 AEAITEAVELLANAKRPVIYSGGGVIN 225 (595)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCcccc
Confidence 357999999999999999999999853
No 124
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=40.93 E-value=17 Score=34.72 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=19.5
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecce
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDT 181 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~ 181 (258)
+++|..|+++|+ +.. ...|+ .|+|+|...
T Consensus 2 ~l~C~~Cg~~~~-~~~---------~~~C~-----~c~g~l~~~ 30 (398)
T TIGR03844 2 TLRCPGCGEVLP-DHY---------TLSCP-----LDCGLLRAE 30 (398)
T ss_pred EEEeCCCCCccC-Ccc---------ccCCC-----CCCCceEEe
Confidence 578999999885 221 23566 788877543
No 125
>PRK08617 acetolactate synthase; Reviewed
Probab=40.92 E-value=27 Score=34.40 Aligned_cols=26 Identities=38% Similarity=0.391 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.+|+.|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 188 PEDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 34688999999999999999999985
No 126
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=40.88 E-value=34 Score=33.57 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=15.8
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|++|+++.
T Consensus 256 ~~~~~~~aDlvl~lG~~~~ 274 (539)
T TIGR02418 256 GDRLLKQADLVITIGYDPI 274 (539)
T ss_pred HHHHHHhCCEEEEecCccc
Confidence 4567889999999999864
No 127
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=40.86 E-value=28 Score=34.14 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.+|+.|.|..
T Consensus 193 ~~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 193 PAALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 45688999999999999999999985
No 128
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=40.83 E-value=25 Score=23.20 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.6
Q ss_pred ecccCCcccccchhh
Q psy8970 138 VDQCNKCERQFVRKS 152 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~ 152 (258)
+.+|..|+..|+.+.
T Consensus 1 ky~C~~CgyvYd~~~ 15 (47)
T PF00301_consen 1 KYQCPVCGYVYDPEK 15 (47)
T ss_dssp EEEETTTSBEEETTT
T ss_pred CcCCCCCCEEEcCCc
Confidence 468999998887554
No 129
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=40.82 E-value=26 Score=34.78 Aligned_cols=28 Identities=21% Similarity=0.065 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
..+.+++++++|++|++.+|+.|.|+..
T Consensus 206 ~~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 206 DPEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 3567999999999999999999999964
No 130
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=40.81 E-value=27 Score=34.65 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.6
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++||++|+|||++.
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~ 288 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFD 288 (566)
T ss_pred HHHHHHHhCCEEEEECCCCC
Confidence 35567889999999999984
No 131
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=40.42 E-value=14 Score=27.82 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=12.6
Q ss_pred CcEEEEeCCccCccC
Q psy8970 45 KHVVLHTGAGISTSA 59 (258)
Q Consensus 45 ~~ivv~tGAGiS~~S 59 (258)
++|++.+|+|++++.
T Consensus 3 ~kILvvCgsG~~TS~ 17 (94)
T PRK10310 3 RKIIVACGGAVATST 17 (94)
T ss_pred CeEEEECCCchhHHH
Confidence 369999999999874
No 132
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=40.17 E-value=27 Score=33.62 Aligned_cols=45 Identities=16% Similarity=0.046 Sum_probs=34.8
Q ss_pred HHhccCCEEEEEecCceeE------------------EEEcCCCCCCCCcccEEEEeeccCcc
Q psy8970 199 YNSSIADLSICLGKCLLSF------------------LKCFFRKTKQNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 199 ~~~~~~Dl~lvvGTSl~V~------------------v~iN~~~t~~d~~adl~i~~~~~~~~ 243 (258)
..+.+||++|++|+-..+. |+|++..|.....||+-|..+-.+|.
T Consensus 166 ~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~i~PGtD~ 228 (461)
T cd02750 166 ADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVPIKPGTDA 228 (461)
T ss_pred hHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEeccCCCcHH
Confidence 4567899999999864333 89999999998899988877666554
No 133
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=40.01 E-value=16 Score=29.48 Aligned_cols=12 Identities=50% Similarity=1.027 Sum_probs=9.8
Q ss_pred cccCCcccccch
Q psy8970 139 DQCNKCERQFVR 150 (258)
Q Consensus 139 ~~C~~C~~~~~~ 150 (258)
.+|++|++.|..
T Consensus 2 H~Ct~Cg~~f~d 13 (131)
T PF09845_consen 2 HQCTKCGRVFED 13 (131)
T ss_pred cccCcCCCCcCC
Confidence 389999998863
No 134
>PRK07064 hypothetical protein; Provisional
Probab=39.96 E-value=28 Score=34.17 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
..+.+++++++|.+|++.||+.|.|+.
T Consensus 189 ~~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 189 DAAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred CHHHHHHHHHHHHhCCCCEEEECCChH
Confidence 345788999999999999999999984
No 135
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=39.83 E-value=30 Score=33.96 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
+.+++++++|++|++.||+.|.|+..
T Consensus 183 ~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 183 DAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 46888999999999999999999964
No 136
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=39.76 E-value=38 Score=33.77 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=16.1
Q ss_pred HHHHhccCCEEEEEecCcee
Q psy8970 197 GDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V 216 (258)
+.+.+++|||+|++||++.-
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~ 296 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDD 296 (585)
T ss_pred HHHHHHhCCEEEEECCCCcc
Confidence 44567899999999998753
No 137
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=39.73 E-value=29 Score=34.60 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
...+++++++|.+|++.+|++|.|+..
T Consensus 187 ~~~i~~a~~~L~~A~rPvil~G~g~~~ 213 (588)
T PRK07525 187 EQSLAEAAELLSEAKFPVILSGAGVVL 213 (588)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 467899999999999999999999853
No 138
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=39.68 E-value=27 Score=33.33 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc-----------cCCCCCCCCC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST-----------SAGIPDFRGP 67 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~-----------~SGIPdFR~~ 67 (258)
++.+++++++|++|++.+|+.|.|... ..|+|.|=+.
T Consensus 198 ~~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt~ 245 (432)
T TIGR00173 198 PESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLADP 245 (432)
T ss_pred hhhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEeC
Confidence 456889999999999999999999863 3566766443
No 139
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=39.41 E-value=30 Score=34.17 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 193 ~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 193 PDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 46789999999999999999999986
No 140
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=39.35 E-value=30 Score=34.22 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.+.+++++++|.+|++.||++|.|+..+
T Consensus 190 ~~~i~~~~~~L~~A~rPviv~G~g~~~~ 217 (563)
T PRK08527 190 SRQIKKAAEAIKEAKKPLFYLGGGAILS 217 (563)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 4568999999999999999999999643
No 141
>PRK12474 hypothetical protein; Provisional
Probab=39.26 E-value=30 Score=33.86 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|+.
T Consensus 188 ~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 188 AETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccc
Confidence 45799999999999999999999985
No 142
>PRK08322 acetolactate synthase; Reviewed
Probab=39.02 E-value=32 Score=33.79 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|+.
T Consensus 183 ~~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 183 PKAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 35688999999999999999999985
No 143
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=38.59 E-value=27 Score=30.94 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
+.+++++++|.+|++ |++.|.|.|...+
T Consensus 116 ~~i~~~~~~i~~a~~-I~i~G~G~S~~~a 143 (284)
T PRK11302 116 SAINRAVDLLTQAKK-ISFFGLGASAAVA 143 (284)
T ss_pred HHHHHHHHHHHcCCe-EEEEEcchHHHHH
Confidence 568899999999987 6888999876543
No 144
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=38.52 E-value=32 Score=34.03 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 194 ~~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 194 RLALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCc
Confidence 45688999999999999999999995
No 145
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=38.51 E-value=34 Score=33.92 Aligned_cols=20 Identities=20% Similarity=0.080 Sum_probs=16.4
Q ss_pred HHHHhccCCEEEEEecCcee
Q psy8970 197 GDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V 216 (258)
+.+.+++||++|++||++..
T Consensus 259 ~~~~~~~aDlvl~lG~~~~~ 278 (574)
T PRK09124 259 GYHAMMNCDTLLMLGTDFPY 278 (574)
T ss_pred HHHHHHhCCEEEEECCCCCc
Confidence 44667899999999998754
No 146
>PRK08617 acetolactate synthase; Reviewed
Probab=38.15 E-value=35 Score=33.60 Aligned_cols=41 Identities=20% Similarity=0.103 Sum_probs=25.9
Q ss_pred HHHHhccCCEEEEEecCceeE-------------EEEcCCCCCCCC--cccEEEEe
Q psy8970 197 GDYNSSIADLSICLGKCLLSF-------------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V~-------------v~iN~~~t~~d~--~adl~i~~ 237 (258)
+.+.+++||++|++|+++.-+ |.||.++...+. ..++.|.+
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 317 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWNSEGDATIIHIDVLPAEIDNYYQPERELIG 317 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccccCCCCcEEEEeCChHHhCCccCCCeEEeC
Confidence 446678999999999976321 556666555433 34555543
No 147
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=38.04 E-value=32 Score=34.04 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|.+|++.||+.|.|...
T Consensus 194 ~~~i~~~a~~L~~AkrPvil~G~g~~~ 220 (561)
T PRK06048 194 PQQIKRAAELIMKAERPIIYAGGGVIS 220 (561)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 347999999999999999999999964
No 148
>PRK15482 transcriptional regulator MurR; Provisional
Probab=38.00 E-value=30 Score=30.92 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
+.+++++++|.+|++ |++.|.|.|...
T Consensus 123 ~~l~~~~~~i~~A~~-I~i~G~G~S~~~ 149 (285)
T PRK15482 123 ARLQKIIEVISKAPF-IQITGLGGSALV 149 (285)
T ss_pred HHHHHHHHHHHhCCe-eEEEEeChhHHH
Confidence 468899999999998 578899987543
No 149
>PRK11269 glyoxylate carboligase; Provisional
Probab=37.95 E-value=35 Score=34.01 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.7
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|++||++.
T Consensus 264 ~~~~~~~aDlvl~lG~~~~ 282 (591)
T PRK11269 264 GNATLLASDFVLGIGNRWA 282 (591)
T ss_pred HHHHHHhCCEEEEeCCCCC
Confidence 4566789999999999864
No 150
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=37.95 E-value=35 Score=34.00 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.+|+.|.|.-
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 190 PLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 45689999999999999999999984
No 151
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=37.78 E-value=41 Score=27.72 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
+.+++..+.+++.++++++ |++.|.|-|...+
T Consensus 17 ~~i~~a~~~i~~~i~~~~~-I~i~G~G~S~~~A 48 (177)
T cd05006 17 EAIEQAAQLLAEALLNGGK-ILICGNGGSAADA 48 (177)
T ss_pred HHHHHHHHHHHHHHHCCCE-EEEEeCcHHHHHH
Confidence 4444444444454455655 6889999887754
No 152
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.75 E-value=37 Score=27.43 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAG 54 (258)
-++.++.+.+.|.+|+++||.||.-
T Consensus 22 ~eeEve~ireyi~sA~r~vV~t~N~ 46 (156)
T COG4019 22 KEEEVEKIREYIVSAKRIVVATNNQ 46 (156)
T ss_pred hHHHHHHHHHHHhccceEEEecCCH
Confidence 4567889999999999999998753
No 153
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=37.55 E-value=32 Score=33.86 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 183 ~~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 183 AAELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 45688999999999999999999985
No 154
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=37.49 E-value=32 Score=34.26 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.+|+.|.|+.
T Consensus 188 ~~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 188 PAEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchH
Confidence 45688999999999999999999984
No 155
>KOG3035|consensus
Probab=37.48 E-value=10 Score=33.51 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=25.9
Q ss_pred CeecceEEEcCCCCChHHHH-------HHHHHhccCCEEEEEecCc
Q psy8970 176 GTLHDTILDWEHNLPQKDIN-------MGDYNSSIADLSICLGKCL 214 (258)
Q Consensus 176 g~lrP~Vv~fgE~~~~~~~~-------~a~~~~~~~Dl~lvvGTSl 214 (258)
|.+||.+++||+++-+.-+. .|....++||+++ =|-|.
T Consensus 3 g~~rp~i~LFGdSItq~sF~~gGwGA~Lad~y~RkaDv~~-RGysG 47 (245)
T KOG3035|consen 3 GPMRPRIVLFGDSITQFSFTDGGWGAALADLYSRKADVLL-RGYSG 47 (245)
T ss_pred CcccccEEEecchhhhhcccCCchhHHHHHHHHHhhhhhh-ccccc
Confidence 45899999999998775332 2445567888743 46554
No 156
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=37.36 E-value=34 Score=33.74 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
..+++++++|.+|++.||+.|.|.-
T Consensus 189 ~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 189 LQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCcc
Confidence 4589999999999999999999985
No 157
>PRK07586 hypothetical protein; Validated
Probab=37.06 E-value=31 Score=33.58 Aligned_cols=20 Identities=5% Similarity=-0.150 Sum_probs=16.6
Q ss_pred HHHHHHhccCCEEEEEecCc
Q psy8970 195 NMGDYNSSIADLSICLGKCL 214 (258)
Q Consensus 195 ~~a~~~~~~~Dl~lvvGTSl 214 (258)
..+.+.+++|||+|+|||++
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~ 273 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKA 273 (514)
T ss_pred HHHHHHHhcCCEEEEECCCC
Confidence 44566788999999999985
No 158
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=36.95 E-value=33 Score=33.86 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
..+++++++|++|++.||+.|.|..
T Consensus 183 ~~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 183 IDFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchh
Confidence 3688899999999999999999974
No 159
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.93 E-value=19 Score=26.42 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=25.1
Q ss_pred eecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCee-----cceEEEcCC
Q psy8970 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL-----HDTILDWEH 187 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~l-----rP~Vv~fgE 187 (258)
....|..|+..++.-. .+...+ ...|+ .||+.| ++.|+|=|-
T Consensus 11 Y~Y~c~~cg~~~dvvq---~~~ddp-lt~ce-----~c~a~~kk~l~~vgi~fKGS 57 (82)
T COG2331 11 YSYECTECGNRFDVVQ---AMTDDP-LTTCE-----ECGARLKKLLNAVGIVFKGS 57 (82)
T ss_pred eEEeecccchHHHHHH---hcccCc-cccCh-----hhChHHHHhhccceEEEecc
Confidence 4568999998765322 222211 22466 899877 567776553
No 160
>PLN02573 pyruvate decarboxylase
Probab=36.79 E-value=29 Score=34.64 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=15.7
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|+||++|.
T Consensus 285 ~~~~~~~aDlvl~lG~~l~ 303 (578)
T PLN02573 285 CAEIVESADAYLFAGPIFN 303 (578)
T ss_pred HHHHHHhCCEEEEECCccC
Confidence 4566789999999998873
No 161
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=36.32 E-value=35 Score=33.80 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
..+++++++|.+|++.||+.|.|+.
T Consensus 203 ~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 203 LQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4588999999999999999999975
No 162
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=36.16 E-value=35 Score=33.74 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
+.+++++++|.+|++.+|+.|.|+..
T Consensus 199 ~~i~~~~~~L~~AkrPvIl~G~g~~~ 224 (564)
T PRK08155 199 ESIRDAAAMINAAKRPVLYLGGGVIN 224 (564)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccc
Confidence 46889999999999999999999963
No 163
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=36.09 E-value=64 Score=26.44 Aligned_cols=35 Identities=43% Similarity=0.646 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC---------CCCCCCC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG---------IPDFRGP 67 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG---------IPdFR~~ 67 (258)
.+++++++..- +.++||+-||-=.-+|| =|+|-||
T Consensus 56 ~Rvk~~aEk~g-~eNvvVllGaaeaEaaglaAETVt~GDPTfAGP 99 (154)
T PRK13265 56 KRVKDLAEKFG-AENVVVILGAAEAEAAGLAAETVTNGDPTFAGP 99 (154)
T ss_pred HHHHHHHHhcC-CccEEEEecccchhhccceeeeeccCCCccccc
Confidence 34455554443 56788887765444444 4999998
No 164
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=36.00 E-value=35 Score=33.84 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.||+.|.|+.
T Consensus 193 ~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (574)
T PRK06466 193 SGQIRKAVEMLLAAKRPVIYSGGGVV 218 (574)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 45688999999999999999999985
No 165
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=35.78 E-value=28 Score=33.93 Aligned_cols=45 Identities=18% Similarity=0.057 Sum_probs=34.6
Q ss_pred HHhccCCEEEEEecCceeE------------------EEEcCCCCCCCCcccEEEEeeccCcc
Q psy8970 199 YNSSIADLSICLGKCLLSF------------------LKCFFRKTKQNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 199 ~~~~~~Dl~lvvGTSl~V~------------------v~iN~~~t~~d~~adl~i~~~~~~~~ 243 (258)
+.+.++|++|++|+-.... |+|++..|.....||+-|..+-.+|.
T Consensus 153 ~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~i~PGtD~ 215 (501)
T cd02766 153 EDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQIRPGTDG 215 (501)
T ss_pred HHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeeccCCCcHH
Confidence 4567889999999765443 89999999998899988776655543
No 166
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=35.77 E-value=37 Score=33.54 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+|++.||+.|.|..
T Consensus 191 ~~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 191 AADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 45688999999999999999999985
No 167
>PRK06450 threonine synthase; Validated
Probab=35.66 E-value=23 Score=32.96 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=17.3
Q ss_pred cccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecc
Q psy8970 139 DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHD 180 (258)
Q Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP 180 (258)
++|..|+++|... ....|+ .|||+|..
T Consensus 4 ~~C~~Cg~~~~~~----------~~~~C~-----~cg~~l~~ 30 (338)
T PRK06450 4 EVCMKCGKERESI----------YEIRCK-----KCGGPFEI 30 (338)
T ss_pred eEECCcCCcCCCc----------ccccCC-----cCCCEeEE
Confidence 6899999887421 123565 78887653
No 168
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=35.59 E-value=55 Score=32.32 Aligned_cols=41 Identities=10% Similarity=-0.127 Sum_probs=26.2
Q ss_pred HHHHhccCCEEEEEecCceeE-------------EEEcCCCCCCCC--cccEEEEe
Q psy8970 197 GDYNSSIADLSICLGKCLLSF-------------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V~-------------v~iN~~~t~~d~--~adl~i~~ 237 (258)
+.+.+++||++|+||+++.-. |.|+.++...+. ..++.|.+
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 335 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQWLADCEPEYWVVDPGPGRLDPAHHATRRLTA 335 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHHHhcCCCCEEEECCCCCcCCCCCCceEEEEE
Confidence 456778999999999987311 556665555443 34455544
No 169
>PRK07064 hypothetical protein; Provisional
Probab=35.56 E-value=40 Score=33.09 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.6
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++|||+|++|+++.
T Consensus 257 ~~~~~~~~aDlvl~iG~~~~ 276 (544)
T PRK07064 257 AVEALYKTCDLLLVVGSRLR 276 (544)
T ss_pred HHHHHHHhCCEEEEecCCCC
Confidence 35667889999999999874
No 170
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=35.55 E-value=37 Score=33.60 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|.+|++.||+.|.|+..
T Consensus 193 ~~~i~~~~~~l~~A~rPvi~~G~g~~~ 219 (574)
T PRK06882 193 KGQIKKALKALLVAKKPVLFVGGGVIT 219 (574)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCccc
Confidence 456889999999999999999999853
No 171
>PRK09411 carbamate kinase; Reviewed
Probab=35.50 E-value=60 Score=29.88 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=39.2
Q ss_pred HHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEeccCc
Q psy8970 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNID 116 (258)
Q Consensus 37 la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNID 116 (258)
+.+.|-++..|||.+|.| |||...+.+|... +-+..- .=..|+... +-...||-+|+|
T Consensus 168 ~I~~Ll~~G~IVI~~gGG-----GIPV~~~~~G~e~-------------vIDkD~--~Aa~LA~~L--~Ad~LIiLTDVd 225 (297)
T PRK09411 168 AIELLLKEGHVVICSGGG-----GVPVTEDGAGSEA-------------VIDKDL--AAALLAEQI--NADGLVILTDAD 225 (297)
T ss_pred HHHHHHHCCCEEEecCCC-----CCCeEEcCCCeEE-------------ecCHHH--HHHHHHHHh--CCCEEEEEeCch
Confidence 334444568889999888 7888765443221 111111 112333333 334578999999
Q ss_pred chHhhcCCCc
Q psy8970 117 GLHLRSGLSR 126 (258)
Q Consensus 117 gLh~kAG~~~ 126 (258)
|++..-|-|.
T Consensus 226 GV~~n~~~p~ 235 (297)
T PRK09411 226 AVYENWGTPQ 235 (297)
T ss_pred hhccCCCCCC
Confidence 9998766443
No 172
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=35.13 E-value=25 Score=29.88 Aligned_cols=27 Identities=30% Similarity=0.695 Sum_probs=19.1
Q ss_pred eecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeec
Q psy8970 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLH 179 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lr 179 (258)
+..+|..|++.|.. +...|| .||+.++
T Consensus 138 w~~rC~GC~~~f~~-----------~~~~Cp-----~CG~~~~ 164 (177)
T COG1439 138 WRLRCHGCKRIFPE-----------PKDFCP-----ICGSPLK 164 (177)
T ss_pred eeEEEecCceecCC-----------CCCcCC-----CCCCceE
Confidence 34699999998761 133577 8998764
No 173
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=35.06 E-value=26 Score=33.21 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=36.0
Q ss_pred CCCCCCCCCcCC----ChHHHHHHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 14 NKGKLGLAETFD----SKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 14 ~~~~~~~~e~~~----~~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
+....-+|-+-+ .+.+.++.|++.|++|.+||+.+++-|+-.|.++
T Consensus 45 ~~~R~~~p~ik~~g~~k~v~~deAie~Aa~ILv~aKrPllyg~s~tscEA 94 (429)
T COG1029 45 SDHRIKAPMIKDDGELKPVDYDEAIEKAAEILVNAKRPLLYGWSSTSCEA 94 (429)
T ss_pred ccccccCceEecCCceeeccHHHHHHHHHHHHHhccCceEeccccchHHH
Confidence 333334565532 4678899999999999999999999999888765
No 174
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=34.63 E-value=94 Score=25.30 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=27.6
Q ss_pred cCCCCCHHHHHHHHHH-H-----cCCCcEEEeccCcchHhhcCCCccccccccc
Q psy8970 87 DDAVPTVTHMAILELV-N-----RGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 134 (258)
Q Consensus 87 ~~~~Pn~~H~~L~~L~-~-----~g~~~~viTQNIDgLh~kAG~~~~~v~elHG 134 (258)
...++-...+...+|. + .++-..+||.|-+.|...|+.....++.+..
T Consensus 85 ~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~~ 138 (158)
T cd05015 85 TTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIPD 138 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCCC
Confidence 4455555555444433 2 3445568999988888767644344444433
No 175
>PRK05858 hypothetical protein; Provisional
Probab=34.55 E-value=43 Score=32.93 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|.+||+.+|+.|.|+.
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (542)
T PRK05858 190 PDALARAAGLLAEAQRPVIMAGTDVW 215 (542)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcc
Confidence 45789999999999999999999985
No 176
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=34.51 E-value=62 Score=30.02 Aligned_cols=72 Identities=18% Similarity=0.330 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEec
Q psy8970 34 IKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQ 113 (258)
Q Consensus 34 l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQ 113 (258)
.+.+..+|+ ...|+|++|-| |||-|...+.+...+. +.+..-..++ |+... +-...|+-+
T Consensus 175 ~~aI~~LLe-~G~IvI~~GgG-----GiPV~~~~g~~~gvea----------ViD~D~aAa~--LA~~L--~AD~LIiLT 234 (313)
T PRK12454 175 IEVIKALVE-NGFIVIASGGG-----GIPVIEEDGELKGVEA----------VIDKDLASEL--LAEEL--NADIFIILT 234 (313)
T ss_pred HHHHHHHHH-CCCEEEEeCCC-----ccceEcCCCcEEeeee----------ecCccHHHHH--HHHHc--CCCEEEEEe
Confidence 334444444 68899999887 8888765443332211 1111111222 33333 334567777
Q ss_pred cCcchHhhcCCC
Q psy8970 114 NIDGLHLRSGLS 125 (258)
Q Consensus 114 NIDgLh~kAG~~ 125 (258)
++||++..-+-+
T Consensus 235 dVdGVy~~~~~p 246 (313)
T PRK12454 235 DVEKVYLNYGKP 246 (313)
T ss_pred CCceeeCCCCCC
Confidence 999998654433
No 177
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=34.49 E-value=22 Score=25.98 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.3
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
++|++.+|+|++++
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 46888999998875
No 178
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=34.39 E-value=29 Score=34.63 Aligned_cols=19 Identities=11% Similarity=-0.006 Sum_probs=16.2
Q ss_pred HHHHHhccCCEEEEEecCc
Q psy8970 196 MGDYNSSIADLSICLGKCL 214 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl 214 (258)
.+.+.+++|||+|++||++
T Consensus 265 ~a~~~~~~aDlvl~lG~~~ 283 (597)
T PRK08273 265 PSYELMRECDTLLMVGSSF 283 (597)
T ss_pred HHHHHHHhCCEEEEeCCCC
Confidence 3566788999999999997
No 179
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=34.38 E-value=40 Score=33.39 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=20.2
Q ss_pred cCCCCChHHHHHHHHHhccCCEEEEEecCce
Q psy8970 185 WEHNLPQKDINMGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 185 fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~ 215 (258)
|.|.+|-..=..+...+++||++|++|+++.
T Consensus 254 ~~e~hpl~~G~~~~~~l~~aDlvl~lG~~~~ 284 (569)
T PRK09259 254 LPDTHPQSAAAARSLALANADVVLLVGARLN 284 (569)
T ss_pred CCCCChhhhhHHHHHHHhcCCEEEEeCCCCc
Confidence 4555553221233456889999999999873
No 180
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=34.28 E-value=24 Score=38.75 Aligned_cols=38 Identities=32% Similarity=0.630 Sum_probs=27.6
Q ss_pred ccccceee-----cccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEE
Q psy8970 131 ELHGNMYV-----DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTIL 183 (258)
Q Consensus 131 elHGsl~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv 183 (258)
-|-||++. +|| +|+..|-+-.+ ...|+ +|||.+-++|-
T Consensus 1530 Dl~GNLRaFsrQ~~RC-kC~~kyRR~PL---------~G~C~-----kCGg~~ilTV~ 1572 (1627)
T PRK14715 1530 DLIGNLRAFSRQEFRC-KCGAKYRRVPL---------KGKCP-----KCGSKLILTVS 1572 (1627)
T ss_pred hhhhhhhhhhccceee-cCCCccccCCC---------CCcCc-----ccCCeEEEEEe
Confidence 56799874 699 99998865432 34566 99998877663
No 181
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.27 E-value=30 Score=23.15 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=10.7
Q ss_pred cccCCcccccchh
Q psy8970 139 DQCNKCERQFVRK 151 (258)
Q Consensus 139 ~~C~~C~~~~~~~ 151 (258)
.+|..|+..|+.+
T Consensus 2 y~C~~CgyiYd~~ 14 (50)
T cd00730 2 YECRICGYIYDPA 14 (50)
T ss_pred cCCCCCCeEECCC
Confidence 6899999888754
No 182
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=34.11 E-value=49 Score=32.95 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=16.6
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++||++|++||++.
T Consensus 262 ~~~~~l~~aD~vl~lG~~~~ 281 (586)
T PRK06276 262 AANYSVTESDVLIAIGCRFS 281 (586)
T ss_pred HHHHHHHcCCEEEEECCCCC
Confidence 45567889999999999874
No 183
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=33.70 E-value=16 Score=33.04 Aligned_cols=21 Identities=24% Similarity=0.505 Sum_probs=10.7
Q ss_pred ccccccc----eeecccCCcccccc
Q psy8970 129 LAELHGN----MYVDQCNKCERQFV 149 (258)
Q Consensus 129 v~elHGs----l~~~~C~~C~~~~~ 149 (258)
+-.|+|. .++++|+-|+..+.
T Consensus 184 ~s~l~~~~~~G~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 184 LSVLRGGEREGKRYLHCSLCGTEWR 208 (290)
T ss_dssp EEEEE------EEEEEETTT--EEE
T ss_pred eEEEecCCCCccEEEEcCCCCCeee
Confidence 4444443 37788888876644
No 184
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=33.58 E-value=41 Score=33.17 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=16.2
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++||++|+||+++.
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~ 279 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFD 279 (558)
T ss_pred HHHHHHHhCCEEEEECCCCC
Confidence 34567789999999999874
No 185
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=33.50 E-value=30 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.598 Sum_probs=20.1
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecce
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDT 181 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~ 181 (258)
+-.|..||++|.- ++. ....|| .||....|.
T Consensus 9 KR~Cp~CG~kFYD------Lnk--~PivCP-----~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD------LNK--DPIVCP-----KCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc------CCC--CCccCC-----CCCCccCcc
Confidence 4579999987531 111 123477 999887777
No 186
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=33.32 E-value=32 Score=33.96 Aligned_cols=21 Identities=19% Similarity=-0.051 Sum_probs=16.8
Q ss_pred HHHHHhccCCEEEEEecCcee
Q psy8970 196 MGDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V 216 (258)
.+.+.+++||++|+|||++.-
T Consensus 261 ~~~~~l~~aDliL~iG~~l~~ 281 (535)
T TIGR03394 261 ELSRLVEESDGLLLLGVILSD 281 (535)
T ss_pred HHHHHHHhCCEEEEECCcccc
Confidence 355677899999999999743
No 187
>PRK08611 pyruvate oxidase; Provisional
Probab=33.23 E-value=43 Score=33.28 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
+.+++++++|++|++.||+.|.|+.
T Consensus 191 ~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 191 KDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred HHHHHHHHHHHcCCCcEEEECcCcc
Confidence 4688999999999999999999985
No 188
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=33.20 E-value=32 Score=22.28 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=17.1
Q ss_pred cccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCee
Q psy8970 139 DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL 178 (258)
Q Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~l 178 (258)
..|..||.++..+. ....+|+ .||..+
T Consensus 3 Y~C~~Cg~~~~~~~--------~~~irC~-----~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKS--------KDVVRCR-----ECGYRI 29 (44)
T ss_pred EECCCCCCEeecCC--------CCceECC-----CCCceE
Confidence 47999998765431 1234576 899654
No 189
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=32.76 E-value=36 Score=33.84 Aligned_cols=46 Identities=13% Similarity=-0.009 Sum_probs=36.2
Q ss_pred HHhccCCEEEEEecCceeE------------------EEEcCCCCCCCCcccEEEEeeccCccc
Q psy8970 199 YNSSIADLSICLGKCLLSF------------------LKCFFRKTKQNNNTNLCGRVVKSTDST 244 (258)
Q Consensus 199 ~~~~~~Dl~lvvGTSl~V~------------------v~iN~~~t~~d~~adl~i~~~~~~~~~ 244 (258)
..+.++|++|++|+-..+. |+|++..|.....||+-|..+-.||.+
T Consensus 155 ~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~irPGTD~a 218 (567)
T cd02765 155 TDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVPIRPGTDPA 218 (567)
T ss_pred hHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEeccCCCchHH
Confidence 4457899999999865444 999999999888999888777666654
No 190
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=32.75 E-value=32 Score=34.24 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=16.2
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++||++|+|||+|.
T Consensus 259 ~~~~~~~~aDlvl~lG~~l~ 278 (588)
T PRK07525 259 AAMELIAKADVVLALGTRLN 278 (588)
T ss_pred HHHHHHHhCCEEEEECCCCc
Confidence 35567889999999999763
No 191
>PF14353 CpXC: CpXC protein
Probab=32.74 E-value=21 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.663 Sum_probs=15.9
Q ss_pred ccceeecccCCcccccchh
Q psy8970 133 HGNMYVDQCNKCERQFVRK 151 (258)
Q Consensus 133 HGsl~~~~C~~C~~~~~~~ 151 (258)
-|+++...|++||+.+..+
T Consensus 33 ~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 33 DGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCcCEEECCCCCCceecC
Confidence 7999999999999875443
No 192
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=32.69 E-value=48 Score=30.14 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCC--CCCCccc----------cccCCCC-ccccccc-CCCCCH
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRG--PNGVWTL----------EKKGIKP-KVNISFD-DAVPTV 93 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~--~~Glw~~----------~~~~~~p-~~~~~f~-~~~Pn~ 93 (258)
..++.+|++++++|.++.+-|++.|.|.|...+.--.+- .-|.-.. .....++ .....+. .-+-..
T Consensus 30 ~~~~~~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~~ 109 (326)
T PRK10892 30 QYINQDFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSE 109 (326)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCCHH
Confidence 334557999999999886557999999887765311110 0011000 0000001 1111121 233445
Q ss_pred HHHHHHHHHHcCCCcEEEeccCcchHhhc
Q psy8970 94 THMAILELVNRGKVHYVVSQNIDGLHLRS 122 (258)
Q Consensus 94 ~H~~L~~L~~~g~~~~viTQNIDgLh~kA 122 (258)
.-.+++.+.+.|-..-.||.|-++-..+.
T Consensus 110 ~~~~~~~ak~~g~~vi~iT~~~~s~la~~ 138 (326)
T PRK10892 110 ILALIPVLKRLHVPLICITGRPESSMARA 138 (326)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCccccc
Confidence 56677777778877789999988776553
No 193
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.55 E-value=50 Score=30.15 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
+.+.+.++.+++.|+++++ |++.|+|-|..-|
T Consensus 46 ~~I~~av~~~~~~l~~ggr-I~~~GaGtSg~la 77 (299)
T PRK05441 46 PQIAAAVDAAAAALRQGGR-LIYIGAGTSGRLG 77 (299)
T ss_pred HHHHHHHHHHHHHHHCCCE-EEEEcCcHHHHHH
Confidence 3455667777788887776 6899999987544
No 194
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=32.50 E-value=32 Score=33.80 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=16.8
Q ss_pred HHHHHhccCCEEEEEecCcee
Q psy8970 196 MGDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V 216 (258)
.+.+.+++||++|++||+|.-
T Consensus 265 ~~~~~~~~aDlvl~lG~~l~~ 285 (539)
T TIGR03393 265 AVKEAIEGADAVICVGVRFTD 285 (539)
T ss_pred HHHHHHhhCCEEEEECCcccc
Confidence 355677899999999998753
No 195
>PRK06154 hypothetical protein; Provisional
Probab=32.27 E-value=34 Score=33.99 Aligned_cols=21 Identities=19% Similarity=0.010 Sum_probs=17.3
Q ss_pred HHHHHhccCCEEEEEecCcee
Q psy8970 196 MGDYNSSIADLSICLGKCLLS 216 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V 216 (258)
.+.+.+++||++|+|||+|.-
T Consensus 273 ~~~~~~~~aDlvL~lG~~l~~ 293 (565)
T PRK06154 273 TVAHFLREADVLFGIGCSLTR 293 (565)
T ss_pred HHHHHHHhCCEEEEECCCCcc
Confidence 356678899999999999863
No 196
>PRK08266 hypothetical protein; Provisional
Probab=32.24 E-value=44 Score=32.79 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
+.+++++++|.+|++.||+.|.|.+
T Consensus 193 ~~i~~~~~~L~~AkrPvIv~G~g~~ 217 (542)
T PRK08266 193 DAIAAAAALIAAAKNPMIFVGGGAA 217 (542)
T ss_pred HHHHHHHHHHHhCCCCEEEECCChh
Confidence 4688899999999999999999964
No 197
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=32.19 E-value=41 Score=33.35 Aligned_cols=26 Identities=15% Similarity=0.496 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|.+
T Consensus 188 ~~~i~~~~~~L~~AkrPvii~G~g~~ 213 (574)
T PRK09124 188 EEELRKLAALLNGSSNITLLCGSGCA 213 (574)
T ss_pred HHHHHHHHHHHHcCCCCEEEECcChH
Confidence 35688999999999999999999985
No 198
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=32.18 E-value=27 Score=27.30 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=10.9
Q ss_pred eeecccCCcccccch
Q psy8970 136 MYVDQCNKCERQFVR 150 (258)
Q Consensus 136 l~~~~C~~C~~~~~~ 150 (258)
-...+|..|+..+..
T Consensus 68 p~~~~C~~Cg~~~~~ 82 (113)
T PRK12380 68 PAQAWCWDCSQVVEI 82 (113)
T ss_pred CcEEEcccCCCEEec
Confidence 346789999977654
No 199
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=32.16 E-value=18 Score=28.22 Aligned_cols=34 Identities=24% Similarity=0.564 Sum_probs=19.6
Q ss_pred cccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCe
Q psy8970 130 AELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177 (258)
Q Consensus 130 ~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~ 177 (258)
+++.=-=...+|..|++.+..+... ..|| .||+.
T Consensus 62 L~Ie~~p~~~~C~~Cg~~~~~~~~~---------~~CP-----~Cgs~ 95 (113)
T PF01155_consen 62 LEIEEVPARARCRDCGHEFEPDEFD---------FSCP-----RCGSP 95 (113)
T ss_dssp EEEEEE--EEEETTTS-EEECHHCC---------HH-S-----SSSSS
T ss_pred EEEEecCCcEECCCCCCEEecCCCC---------CCCc-----CCcCC
Confidence 4444444568999999988765431 2476 89875
No 200
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=32.12 E-value=25 Score=30.82 Aligned_cols=34 Identities=35% Similarity=0.739 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCcc
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT 72 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~ 72 (258)
.+|..+.++++..=+|||--|||.|.-||- |+|+
T Consensus 113 knIk~~eDll~~gi~ivV~dGaG~sntsgt-------gvwE 146 (252)
T COG4588 113 KNIKGFEDLLKPGIGIVVNDGAGVSNTSGT-------GVWE 146 (252)
T ss_pred cccccHHHHhcCCceEEEeCCCcccCCCCc-------eehH
Confidence 357788899999999999999999999985 6775
No 201
>PRK12354 carbamate kinase; Reviewed
Probab=32.02 E-value=53 Score=30.33 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCc-cccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEec
Q psy8970 35 KVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVW-TLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQ 113 (258)
Q Consensus 35 ~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw-~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQ 113 (258)
+.+..+| ++..|||.+|.| |||-..+.++-+ ..+ .+-+..-.. ..|+... +-...++-+
T Consensus 166 ~~I~~Ll-~~g~ivIa~GGG-----GIPV~~~~~~~~~gv~----------aViD~D~~A--a~LA~~l--~Ad~LiiLT 225 (307)
T PRK12354 166 RPIRWLL-EKGHLVICAGGG-----GIPVVYDADGKLHGVE----------AVIDKDLAA--ALLAEQL--DADLLLILT 225 (307)
T ss_pred HHHHHHH-HCCCEEEEeCCC-----ccCeEecCCCceeeee----------ecCCccHHH--HHHHHHc--CCCEEEEEe
Confidence 3344444 467889999888 999988764421 111 111222112 2333333 344568888
Q ss_pred cCcchHhhcCCC
Q psy8970 114 NIDGLHLRSGLS 125 (258)
Q Consensus 114 NIDgLh~kAG~~ 125 (258)
+|||++..-|-|
T Consensus 226 dVdGVy~~~~~p 237 (307)
T PRK12354 226 DVDAVYLDWGKP 237 (307)
T ss_pred CCcceecCCCCC
Confidence 999999765544
No 202
>PRK07524 hypothetical protein; Provisional
Probab=31.81 E-value=34 Score=33.54 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.7
Q ss_pred HHHHHHhccCCEEEEEecCc
Q psy8970 195 NMGDYNSSIADLSICLGKCL 214 (258)
Q Consensus 195 ~~a~~~~~~~Dl~lvvGTSl 214 (258)
..+.+.++++||+|++||++
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~ 274 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTEL 274 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCc
Confidence 34667788999999999986
No 203
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=31.36 E-value=37 Score=33.45 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCcc------------CccCCCCCCCCCCC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGI------------STSAGIPDFRGPNG 69 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGi------------S~~SGIPdFR~~~G 69 (258)
..|+.++++|+.|++-+|+.|.|+ +-..|||---+..|
T Consensus 217 ~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQaG 266 (617)
T COG3962 217 RELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAG 266 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccCC
Confidence 468899999999999999999996 34467887665544
No 204
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=31.28 E-value=27 Score=36.26 Aligned_cols=46 Identities=20% Similarity=0.037 Sum_probs=37.0
Q ss_pred HHHhccCCEEEEEecCceeE-------------------EEEcCCCCCCCCcccEEEEeeccCcc
Q psy8970 198 DYNSSIADLSICLGKCLLSF-------------------LKCFFRKTKQNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 198 ~~~~~~~Dl~lvvGTSl~V~-------------------v~iN~~~t~~d~~adl~i~~~~~~~~ 243 (258)
.+.+..+|++|+||+.-+=. |++.+.++.....||+.|+-+-.++.
T Consensus 415 i~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~ 479 (978)
T COG3383 415 IEDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDL 479 (978)
T ss_pred HHHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccH
Confidence 46678999999999854322 99999999999999999987665553
No 205
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=31.09 E-value=25 Score=27.25 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=10.0
Q ss_pred cccCCcccccch
Q psy8970 139 DQCNKCERQFVR 150 (258)
Q Consensus 139 ~~C~~C~~~~~~ 150 (258)
.||++||+.|+.
T Consensus 3 H~CtrCG~vf~~ 14 (112)
T COG3364 3 HQCTRCGEVFDD 14 (112)
T ss_pred ceeccccccccc
Confidence 489999998864
No 206
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=30.96 E-value=51 Score=29.51 Aligned_cols=42 Identities=24% Similarity=0.560 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCcc-------CCCCCCCCCCCCc
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTS-------AGIPDFRGPNGVW 71 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~~-------SGIPdFR~~~Glw 71 (258)
..+.++.|+++++.++..+|+.|+|+..+ +|+..|-+....|
T Consensus 154 a~~g~~~L~~lv~~a~~~~Im~GgGV~~~Nv~~l~~tG~~~~H~s~~~~ 202 (248)
T PRK11572 154 AEQGLSLIMELIAASDGPIIMAGAGVRLSNLHKFLDAGVREVHSSAGQW 202 (248)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEeeCCCcc
Confidence 56778888899988777779999999864 4555554443333
No 207
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=30.87 E-value=30 Score=21.15 Aligned_cols=16 Identities=25% Similarity=0.684 Sum_probs=8.9
Q ss_pred ccceeecccCCccccc
Q psy8970 133 HGNMYVDQCNKCERQF 148 (258)
Q Consensus 133 HGsl~~~~C~~C~~~~ 148 (258)
.|.|.-.+|..|+..+
T Consensus 6 ~~~l~~~rC~~Cg~~~ 21 (37)
T PF12172_consen 6 EGRLLGQRCRDCGRVQ 21 (37)
T ss_dssp TT-EEEEE-TTT--EE
T ss_pred CCEEEEEEcCCCCCEe
Confidence 3667778999999763
No 208
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=30.85 E-value=29 Score=27.14 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=10.9
Q ss_pred eecccCCcccccchh
Q psy8970 137 YVDQCNKCERQFVRK 151 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~ 151 (258)
...+|..|++.+...
T Consensus 69 ~~~~C~~Cg~~~~~~ 83 (115)
T TIGR00100 69 VECECEDCSEEVSPE 83 (115)
T ss_pred cEEEcccCCCEEecC
Confidence 357899999776543
No 209
>COG1773 Rubredoxin [Energy production and conversion]
Probab=30.67 E-value=32 Score=23.59 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.7
Q ss_pred eecccCCcccccchhh
Q psy8970 137 YVDQCNKCERQFVRKS 152 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~ 152 (258)
.+++|..||..|+.+.
T Consensus 2 ~~~~C~~CG~vYd~e~ 17 (55)
T COG1773 2 KRWRCSVCGYVYDPEK 17 (55)
T ss_pred CceEecCCceEecccc
Confidence 4689999999887553
No 210
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=30.58 E-value=76 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCcc
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGI 55 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGi 55 (258)
+++-.+.++++.++.+.+|+++|||-
T Consensus 23 i~~~a~~i~~~~~~g~~vvvV~ggG~ 48 (229)
T cd04239 23 LKEIAREIKEVVDLGVEVAIVVGGGN 48 (229)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCh
Confidence 33333334444444568999999875
No 211
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=30.19 E-value=75 Score=30.28 Aligned_cols=40 Identities=13% Similarity=-0.159 Sum_probs=25.2
Q ss_pred HHHHhccCCEEEEEecCceeE-------------EEEcCCCCCCCC--cccEEEEe
Q psy8970 197 GDYNSSIADLSICLGKCLLSF-------------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V~-------------v~iN~~~t~~d~--~adl~i~~ 237 (258)
+.+.+ ++|++|++|+.+.-. |.|+.++...+. ..++.|.+
T Consensus 269 ~~~~~-~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~ 323 (432)
T TIGR00173 269 LREEL-QPDLVIRFGGPPVSKRLRQWLARQPAEYWVVDPDPGWLDPSHHATTRLEA 323 (432)
T ss_pred hhhhC-CCCEEEEeCCCcchhHHHHHHhCCCCcEEEECCCCCccCCCCCceEEEEE
Confidence 33456 899999999997322 556666655443 34555544
No 212
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=30.09 E-value=56 Score=29.10 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCccCC-------CCCCCCC
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG-------IPDFRGP 67 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SG-------IPdFR~~ 67 (258)
+.+.+.++.+++.|+++.+ |++.|||-|.--| .|+|-.+
T Consensus 33 ~~I~~av~~~~~~l~~ggr-l~~~GaGtSg~la~~da~e~~~tfg~~ 78 (257)
T cd05007 33 PQIARAVDAAAERLRAGGR-LIYVGAGTSGRLGVLDASELPPTFGTP 78 (257)
T ss_pred HHHHHHHHHHHHHHHcCCE-EEEEcCcHHHHHHHHHHHhccccccCC
Confidence 4566777778888887766 6899999885433 3677653
No 213
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=29.73 E-value=39 Score=30.88 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=29.2
Q ss_pred hccCCEEEEEecCceeE------------------EEEcCCCCCCCCcccEEEEeeccCcc
Q psy8970 201 SSIADLSICLGKCLLSF------------------LKCFFRKTKQNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 201 ~~~~Dl~lvvGTSl~V~------------------v~iN~~~t~~d~~adl~i~~~~~~~~ 243 (258)
++++|++|++|+-.... |+|++..+.....+|..|..+-.++.
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i~i~pgtd~ 214 (374)
T cd00368 154 IENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLPIRPGTDA 214 (374)
T ss_pred HhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEeeCCCCCcHH
Confidence 45677777777654333 88888888887888887765544443
No 214
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.48 E-value=37 Score=34.59 Aligned_cols=45 Identities=18% Similarity=0.119 Sum_probs=34.3
Q ss_pred HHhccCCEEEEEecCceeE-------------------EEEcCCCCCCCCcccEEEEeeccCcc
Q psy8970 199 YNSSIADLSICLGKCLLSF-------------------LKCFFRKTKQNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 199 ~~~~~~Dl~lvvGTSl~V~-------------------v~iN~~~t~~d~~adl~i~~~~~~~~ 243 (258)
..++++|++|++|+-.... |+|++..|.....||+.|..+..+|.
T Consensus 165 ~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~ 228 (649)
T cd02752 165 NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDI 228 (649)
T ss_pred HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHH
Confidence 4467899999999865432 88888888888889988877665554
No 215
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.32 E-value=60 Score=24.58 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=34.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccc--cceeecccCCcccccch
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVR 150 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elH--Gsl~~~~C~~C~~~~~~ 150 (258)
...++..++.|..|++.|.+..+-..| + . ..+++. ..-.++.|..||+.++.
T Consensus 32 ~i~~~TVYR~L~~L~~~Gli~~~~~~~--~---~------~~y~~~~~~~h~H~~C~~Cg~i~~~ 85 (116)
T cd07153 32 SISLATVYRTLELLEEAGLVREIELGD--G---K------ARYELNTDEHHHHLICTKCGKVIDF 85 (116)
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEEeCC--C---c------eEEEeCCCCCCCceEeCCCCCEEEe
Confidence 456777899999999999887765443 1 0 112211 12246899999987654
No 216
>PRK04940 hypothetical protein; Provisional
Probab=29.24 E-value=38 Score=28.85 Aligned_cols=51 Identities=10% Similarity=-0.011 Sum_probs=31.7
Q ss_pred cceEEEc--CCCCChHHHHHHHHHhcc----C--CEEEEEecCceeE-------------EEEcCCCCCCCC
Q psy8970 179 HDTILDW--EHNLPQKDINMGDYNSSI----A--DLSICLGKCLLSF-------------LKCFFRKTKQNN 229 (258)
Q Consensus 179 rP~Vv~f--gE~~~~~~~~~a~~~~~~----~--Dl~lvvGTSl~V~-------------v~iN~~~t~~d~ 229 (258)
.|++.+. ....|.+.++...+.+.+ . +=+++||+||==+ |+||+.-.|...
T Consensus 26 ~p~~~~~~l~~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~~ 97 (180)
T PRK04940 26 DPDVRLISYSTLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPEEN 97 (180)
T ss_pred CCCCeEEECCCCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChHHH
Confidence 5676553 334455555544444321 1 3478899998544 999998887653
No 217
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.21 E-value=35 Score=26.06 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=12.3
Q ss_pred ccCCEEEEEecCce
Q psy8970 202 SIADLSICLGKCLL 215 (258)
Q Consensus 202 ~~~Dl~lvvGTSl~ 215 (258)
.++||+||.|+|+-
T Consensus 39 ~dAeLviV~G~sip 52 (103)
T COG3925 39 NDAELVIVFGSSIP 52 (103)
T ss_pred CcccEEEEeccccC
Confidence 47999999999974
No 218
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=29.17 E-value=62 Score=27.73 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
+.+++..+.+++.++++++| ++.|.|-|+.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI-~~~G~GgSa~ 54 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKI-LCCGNGTSAA 54 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEE-EEEECcHHHH
Confidence 44555556666666666776 5559998754
No 219
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=28.84 E-value=38 Score=33.73 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=17.6
Q ss_pred HHHHHHhccCCEEEEEecCce
Q psy8970 195 NMGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 195 ~~a~~~~~~~Dl~lvvGTSl~ 215 (258)
..+...+++|||+|+|||.+.
T Consensus 258 ~~a~~~~~~aDlll~vG~rf~ 278 (550)
T COG0028 258 KAANEALEEADLLLAVGARFD 278 (550)
T ss_pred HHHHHHhhcCCEEEEecCCCc
Confidence 346677889999999999876
No 220
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.81 E-value=71 Score=25.71 Aligned_cols=52 Identities=12% Similarity=0.028 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccc--cceeecccCCcccccch
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELH--GNMYVDQCNKCERQFVR 150 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elH--Gsl~~~~C~~C~~~~~~ 150 (258)
...+...++.|..|++.|.+..+-..|--. .|++. +.-.++.|..||+....
T Consensus 49 ~i~~aTVYR~L~~L~e~Gli~~~~~~~~~~-----------~y~~~~~~~H~H~iC~~Cg~i~~i 102 (148)
T PRK09462 49 EIGLATVYRVLNQFDDAGIVTRHNFEGGKS-----------VFELTQQHHHDHLICLDCGKVIEF 102 (148)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCcE-----------EEEeCCCCCCCceEECCCCCEEEe
Confidence 456677899999999999887665544111 12211 11245899999987654
No 221
>PRK02947 hypothetical protein; Provisional
Probab=28.62 E-value=67 Score=28.33 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
++.+++..+.+++.|.++++|. +.|.|-|...
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~-i~G~G~S~~v 54 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIY-VFGTGHSHIL 54 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEE-EEcCcHHHHH
Confidence 3555666666666677777765 5688877553
No 222
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=28.57 E-value=72 Score=26.56 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=34.6
Q ss_pred CCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEeccCcchH
Q psy8970 44 AKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLH 119 (258)
Q Consensus 44 a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh 119 (258)
...-||+++||+++ ++|..=... ...|-...-. ....-.+.-+|-.+.+.-.-.-|-|-|||+-+
T Consensus 52 ~g~~viIa~AG~aa--~Lpgvva~~--------t~~PVIgvP~-~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~ 116 (156)
T TIGR01162 52 RGIKVIIAGAGGAA--HLPGMVAAL--------TPLPVIGVPV-PSKALSGLDSLLSIVQMPSGVPVATVAIGNAG 116 (156)
T ss_pred CCCeEEEEeCCccc--hhHHHHHhc--------cCCCEEEecC-CccCCCCHHHHHHHhcCCCCCeeEEEEcCChh
Confidence 45689999999974 466543311 1122211111 11122344555566664444458899999765
No 223
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.18 E-value=42 Score=33.42 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=16.0
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|+|||++.
T Consensus 281 a~~~~~~aDlvl~lG~~~~ 299 (587)
T PRK06965 281 ANMAMQHCDVLIAIGARFD 299 (587)
T ss_pred HHHHHHhCCEEEEECCCCc
Confidence 5567789999999999874
No 224
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.08 E-value=46 Score=32.29 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=31.4
Q ss_pred HhccCCEEEEEecCceeE------------------EEEcCCCCCCCCcccEEEEeeccCccc
Q psy8970 200 NSSIADLSICLGKCLLSF------------------LKCFFRKTKQNNNTNLCGRVVKSTDST 244 (258)
Q Consensus 200 ~~~~~Dl~lvvGTSl~V~------------------v~iN~~~t~~d~~adl~i~~~~~~~~~ 244 (258)
.+.++|++|++|+-.... |.|++..+.....||+.|..+-.+|..
T Consensus 153 d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~i~PGtD~a 215 (512)
T cd02753 153 DIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQLRPGTDVA 215 (512)
T ss_pred HHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeCCCCCcHHH
Confidence 345677777777654332 888988888888899887766665543
No 225
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=27.70 E-value=33 Score=26.90 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=12.5
Q ss_pred ccccceeecccCCcccccch
Q psy8970 131 ELHGNMYVDQCNKCERQFVR 150 (258)
Q Consensus 131 elHGsl~~~~C~~C~~~~~~ 150 (258)
++.=--...+|..|++.+..
T Consensus 64 ~Ie~vp~~~~C~~Cg~~~~~ 83 (117)
T PRK00564 64 DIVDEKVELECKDCSHVFKP 83 (117)
T ss_pred EEEecCCEEEhhhCCCcccc
Confidence 33333446789999976544
No 226
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=27.68 E-value=44 Score=33.05 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.1
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|++||++.
T Consensus 267 ~~~~l~~aD~vl~lG~~~~ 285 (561)
T PRK06048 267 ANYAIQESDLIIAVGARFD 285 (561)
T ss_pred HHHHHHhCCEEEEECCCCC
Confidence 5567889999999999875
No 227
>PRK12474 hypothetical protein; Provisional
Probab=27.24 E-value=55 Score=31.99 Aligned_cols=19 Identities=5% Similarity=-0.225 Sum_probs=15.9
Q ss_pred HHHHHhccCCEEEEEecCc
Q psy8970 196 MGDYNSSIADLSICLGKCL 214 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl 214 (258)
.+.+.+++||++|+||+++
T Consensus 259 ~~~~~~~~aDlvl~lG~~~ 277 (518)
T PRK12474 259 QITAFLKDVEQLVLVGAKP 277 (518)
T ss_pred HHHHHHhhCCEEEEECCCC
Confidence 3456788999999999986
No 228
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=27.23 E-value=45 Score=33.14 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
..+.+.-+++...+.--+|+++|..=+..
T Consensus 75 ~~n~~~~i~~A~~~~~Pvl~I~G~~~~~~ 103 (575)
T TIGR02720 75 ATHLLNGLYDAKEDHVPVLALVGQVPTTG 103 (575)
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCcccc
Confidence 34456777777777778888888654443
No 229
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=27.18 E-value=34 Score=24.76 Aligned_cols=14 Identities=36% Similarity=0.760 Sum_probs=10.3
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
+++++++|+|++++
T Consensus 1 ~~ilivC~~G~~tS 14 (89)
T cd05566 1 KKILVACGTGVATS 14 (89)
T ss_pred CEEEEECCCCccHH
Confidence 36778888888765
No 230
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.01 E-value=28 Score=19.33 Aligned_cols=7 Identities=29% Similarity=1.103 Sum_probs=3.9
Q ss_pred cCCcccc
Q psy8970 141 CNKCERQ 147 (258)
Q Consensus 141 C~~C~~~ 147 (258)
|++||++
T Consensus 2 Cp~CG~~ 8 (23)
T PF13240_consen 2 CPNCGAE 8 (23)
T ss_pred CcccCCC
Confidence 5566554
No 231
>PRK08197 threonine synthase; Validated
Probab=26.93 E-value=38 Score=32.06 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=12.1
Q ss_pred eeecccCCcccccchh
Q psy8970 136 MYVDQCNKCERQFVRK 151 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~ 151 (258)
+..++|..|+++|..+
T Consensus 5 ~~~~~C~~Cg~~~~~~ 20 (394)
T PRK08197 5 VSHLECSKCGETYDAD 20 (394)
T ss_pred eeEEEECCCCCCCCCC
Confidence 3458999999988643
No 232
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=26.76 E-value=33 Score=34.08 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=15.5
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.++++||+|++||++.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~ 291 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVP 291 (569)
T ss_pred cchhhhhCCEEEEeCCCCC
Confidence 4566789999999999763
No 233
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.60 E-value=49 Score=26.63 Aligned_cols=31 Identities=10% Similarity=0.156 Sum_probs=19.1
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecce
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDT 181 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~ 181 (258)
+-.|++|+++|.- ++. ....|| .||....|.
T Consensus 9 Kr~Cp~cg~kFYD------Lnk--~p~vcP-----~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD------LNR--RPAVSP-----YTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc------cCC--CCccCC-----CcCCccCcc
Confidence 4579999987531 111 234576 898766555
No 234
>PLN02569 threonine synthase
Probab=26.59 E-value=37 Score=33.32 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=19.1
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeec
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLH 179 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lr 179 (258)
.++|..|+++|+.+.. ...| .|||+|.
T Consensus 49 ~l~C~~Cg~~y~~~~~---------~~~C------~cgg~l~ 75 (484)
T PLN02569 49 FLECPLTGEKYSLDEV---------VYRS------KSGGLLD 75 (484)
T ss_pred ccEeCCCCCcCCCccc---------cccC------CCCCeEE
Confidence 5899999999865432 2345 4998885
No 235
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.19 E-value=61 Score=25.40 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 33 KIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 33 ~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.++++++.++++++| ++.|.|-|-.
T Consensus 2 ~~~~~a~~~~~~~~i-~~~G~G~s~~ 26 (153)
T cd05009 2 DIKELAEKLKEAKSF-YVLGRGPNYG 26 (153)
T ss_pred hHHHHHHHHhccCcE-EEEcCCCCHH
Confidence 467889999998877 5678887644
No 236
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=26.18 E-value=35 Score=31.17 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.5
Q ss_pred cEEEEeCCccCccCCCCC
Q psy8970 46 HVVLHTGAGISTSAGIPD 63 (258)
Q Consensus 46 ~ivv~tGAGiS~~SGIPd 63 (258)
..+..||+|+|++-|+||
T Consensus 37 ~ai~~ss~~va~slG~pD 54 (290)
T TIGR02321 37 GGIWGSGFELSASYAVPD 54 (290)
T ss_pred CEEEECHHHHHHHCCCCC
Confidence 578999999999999998
No 237
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=26.18 E-value=65 Score=26.53 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAG 54 (258)
.+.++.+.+.|.+|++|||-|..+
T Consensus 22 ~EEv~~Ir~~I~nakkIvV~t~N~ 45 (154)
T PF11576_consen 22 EEEVEAIREYILNAKKIVVATNNE 45 (154)
T ss_dssp HHHHHHHHHHHHH-S-EEE----H
T ss_pred HHHHHHHHHHHhcCceEEEecCCc
Confidence 455778999999999999988765
No 238
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=26.03 E-value=49 Score=25.69 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=16.6
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCe
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~ 177 (258)
..+|..|+..... .-.|....||.||+.
T Consensus 42 ~~~C~~Cg~~~~~------------~~SCk~R~CP~C~~~ 69 (111)
T PF14319_consen 42 RYRCEDCGHEKIV------------YNSCKNRHCPSCQAK 69 (111)
T ss_pred eeecCCCCceEEe------------cCcccCcCCCCCCCh
Confidence 5678888765321 124665566688753
No 239
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=25.49 E-value=52 Score=32.66 Aligned_cols=20 Identities=15% Similarity=-0.072 Sum_probs=16.7
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.++++|++|++||.+.
T Consensus 277 ~~~~~l~~aDlvl~lG~~~~ 296 (578)
T PRK06112 277 HLRDLVREADVVLLVGTRTN 296 (578)
T ss_pred HHHHHHHhCCEEEEECCCCC
Confidence 45677889999999999875
No 240
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=25.49 E-value=45 Score=27.54 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=14.7
Q ss_pred HHHHHHHHhCC---cEEEEeCCccCcc
Q psy8970 35 KVLSEWIDKAK---HVVLHTGAGISTS 58 (258)
Q Consensus 35 ~~la~~i~~a~---~ivv~tGAGiS~~ 58 (258)
+++.+++++.+ .-||+++||+|+.
T Consensus 42 ~~l~~~~~~~~~~~~~viIa~AG~~a~ 68 (150)
T PF00731_consen 42 ERLLEFVKEYEARGADVIIAVAGMSAA 68 (150)
T ss_dssp HHHHHHHHHTTTTTESEEEEEEESS--
T ss_pred HHHHHHHHHhccCCCEEEEEECCCccc
Confidence 34555555543 2499999999743
No 241
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=25.47 E-value=49 Score=32.86 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=24.5
Q ss_pred EcCCCCChH--------HHHHHHHHhccCCEEEEEecCceeE
Q psy8970 184 DWEHNLPQK--------DINMGDYNSSIADLSICLGKCLLSF 217 (258)
Q Consensus 184 ~fgE~~~~~--------~~~~a~~~~~~~Dl~lvvGTSl~V~ 217 (258)
+|+|+.|.. .-....+.++.||++|.+|+-|.=+
T Consensus 249 ~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~ 290 (557)
T COG3961 249 VIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDF 290 (557)
T ss_pred cccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeec
Confidence 567776653 1244678899999999999976544
No 242
>PRK04351 hypothetical protein; Provisional
Probab=25.33 E-value=42 Score=27.60 Aligned_cols=38 Identities=29% Similarity=0.724 Sum_probs=24.6
Q ss_pred ccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecc
Q psy8970 133 HGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHD 180 (258)
Q Consensus 133 HGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP 180 (258)
-+.-+..+|..|+..+.+..- +. ..-..|. .|+|.|+.
T Consensus 107 ~~~~y~Y~C~~Cg~~~~r~Rr---~n--~~~yrCg-----~C~g~L~~ 144 (149)
T PRK04351 107 QKKNYLYECQSCGQQYLRKRR---IN--TKRYRCG-----KCRGKLKL 144 (149)
T ss_pred CCceEEEECCCCCCEeeeeee---cC--CCcEEeC-----CCCcEeee
Confidence 456678999999987754321 11 1234565 89998865
No 243
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=24.91 E-value=53 Score=32.61 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++|||+|++||.+.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~ 274 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLG 274 (579)
T ss_pred HHHHHHHhCCEEEEECCCCc
Confidence 35667889999999998874
No 244
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.89 E-value=68 Score=31.69 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=17.5
Q ss_pred HHHHhccCCEEEEEecCceeE
Q psy8970 197 GDYNSSIADLSICLGKCLLSF 217 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V~ 217 (258)
|....++|||+|-|||.++=.
T Consensus 289 AN~~A~~ADlVigiGTR~~DF 309 (617)
T COG3962 289 ANRAAEEADLVIGIGTRLQDF 309 (617)
T ss_pred HHhhhhhcCEEEEeccccccc
Confidence 556778999999999988765
No 245
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=24.65 E-value=53 Score=32.47 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=15.4
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|++|+++.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~ 285 (572)
T PRK06456 267 ASMAALESDAMLVVGARFS 285 (572)
T ss_pred HHHHHHhCCEEEEECCCCc
Confidence 4556778999999999863
No 246
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=24.52 E-value=56 Score=32.26 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=16.1
Q ss_pred HHHHHhccCCEEEEEecCce
Q psy8970 196 MGDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~ 215 (258)
.+.+.+++|||+|++|+++.
T Consensus 263 ~~~~~l~~aDlvl~lG~~~~ 282 (557)
T PRK08199 263 ALAARIREADLVLAVGTRLG 282 (557)
T ss_pred HHHHHHHhCCEEEEeCCCCc
Confidence 35567789999999998763
No 247
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.51 E-value=40 Score=24.22 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=9.0
Q ss_pred cEEEEeCCccCcc
Q psy8970 46 HVVLHTGAGISTS 58 (258)
Q Consensus 46 ~ivv~tGAGiS~~ 58 (258)
++++++|+|++++
T Consensus 1 kilvvC~~G~~tS 13 (86)
T cd05563 1 KILAVCGSGLGSS 13 (86)
T ss_pred CEEEECCCCccHH
Confidence 3677777777765
No 248
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.44 E-value=94 Score=29.00 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.|+++++.+.++++.+|+.|-|+..
T Consensus 222 ~~~i~~lA~~l~~a~~~~i~~g~g~~~ 248 (415)
T cd02761 222 AETILELAERLKNAKFGVIFWGLGLLP 248 (415)
T ss_pred HHHHHHHHHHHHhCCceEEEEeccccc
Confidence 356889999999999999999988863
No 249
>PRK12686 carbamate kinase; Reviewed
Probab=24.38 E-value=1.6e+02 Score=27.24 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=38.3
Q ss_pred HHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEeccCc
Q psy8970 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNID 116 (258)
Q Consensus 37 la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNID 116 (258)
+.+.|-+...|+|.+|.| |||-....+.++..+. |-++.=-.+ .|+.+. +-...|+-++||
T Consensus 175 ~I~~Ll~~G~IpI~~Ggg-----gIPVv~~~~~~~gv~a----------vid~D~~Aa--~LA~~L--~Ad~LIiLTDVd 235 (312)
T PRK12686 175 TIRTLVDGGNIVIACGGG-----GIPVIRDDNTLKGVEA----------VIDKDFASE--KLAEQI--DADLLIILTGVE 235 (312)
T ss_pred HHHHHHHCCCEEEEeCCC-----CCCeEecCCcEEeeec----------ccCccHHHH--HHHHHc--CCCEEEEEeCch
Confidence 333444568889988887 8998775443332211 112221222 333443 334568889999
Q ss_pred chHhhc
Q psy8970 117 GLHLRS 122 (258)
Q Consensus 117 gLh~kA 122 (258)
|++..-
T Consensus 236 GVy~~~ 241 (312)
T PRK12686 236 NVFINF 241 (312)
T ss_pred hhccCC
Confidence 998653
No 250
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=24.31 E-value=45 Score=30.58 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=35.8
Q ss_pred cEEEEeCCccCccCCCCCCCCCCCCcccc--------ccCCCCc---ccccccCCCCCHHHHHHHHHHHcCC
Q psy8970 46 HVVLHTGAGISTSAGIPDFRGPNGVWTLE--------KKGIKPK---VNISFDDAVPTVTHMAILELVNRGK 106 (258)
Q Consensus 46 ~ivv~tGAGiS~~SGIPdFR~~~Glw~~~--------~~~~~p~---~~~~f~~~~Pn~~H~~L~~L~~~g~ 106 (258)
+.+.+||+|++.+-|+||+--.. |+.. .--.-|- ....|.+ |.-.-+.+++|++.|-
T Consensus 40 ~al~~sg~~vA~slG~pD~~~~t--~~e~~~~vrrI~~a~~lPv~vD~dtGfG~--~~nvartV~~~~~aG~ 107 (289)
T COG2513 40 KALYLSGAGVAASLGLPDLGITT--LDEVLADARRITDAVDLPVLVDIDTGFGE--ALNVARTVRELEQAGA 107 (289)
T ss_pred eEEEeccHHHHHhcCCCcccccc--HHHHHHHHHHHHhhcCCceEEeccCCCCc--HHHHHHHHHHHHHcCc
Confidence 67889999999999999975432 3210 0011121 1123444 7778888888887664
No 251
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=24.28 E-value=81 Score=26.32 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
-..+..-+..+.-+++.--.+|+.||||++..--
T Consensus 75 ~~~l~~~~~~~~il~r~rPdvii~nGpg~~vp~~ 108 (170)
T PF08660_consen 75 FTTLRAFLQSLRILRRERPDVIISNGPGTCVPVC 108 (170)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCceeeHHH
Confidence 3444555666666677778999999999886543
No 252
>KOG1718|consensus
Probab=24.05 E-value=54 Score=27.94 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHh----CCcEEEEeCCccCccCCC
Q psy8970 28 EDFDKKIKVLSEWIDK----AKHVVLHTGAGISTSAGI 61 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~----a~~ivv~tGAGiS~~SGI 61 (258)
..+..-++.+|+.|.+ ..+++|.+-||+|-++-|
T Consensus 74 ~~l~~hfD~vAD~I~~v~~~gG~TLvHC~AGVSRSAsL 111 (198)
T KOG1718|consen 74 ARLYDHFDPVADKIHSVIMRGGKTLVHCVAGVSRSASL 111 (198)
T ss_pred chhhhhhhHHHHHHHHHHhcCCcEEEEEccccchhHHH
Confidence 4455556666666554 578999999999988764
No 253
>PRK08266 hypothetical protein; Provisional
Probab=23.99 E-value=52 Score=32.31 Aligned_cols=21 Identities=19% Similarity=-0.031 Sum_probs=16.7
Q ss_pred HHHHhccCCEEEEEecCceeE
Q psy8970 197 GDYNSSIADLSICLGKCLLSF 217 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V~ 217 (258)
+.+.+++||++|++||++...
T Consensus 257 ~~~~~~~aDlvl~lG~~~~~~ 277 (542)
T PRK08266 257 AYELWPQTDVVIGIGSRLELP 277 (542)
T ss_pred HHHHHHhCCEEEEeCCCcCcc
Confidence 456778999999999987533
No 254
>KOG1185|consensus
Probab=23.96 E-value=96 Score=30.74 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=0.0
Q ss_pred CCCCChHHHHHHHHHhccCCEEEEEecCceeE-----------------EEEcCCCCCCC-CcccEEEEe
Q psy8970 186 EHNLPQKDINMGDYNSSIADLSICLGKCLLSF-----------------LKCFFRKTKQN-NNTNLCGRV 237 (258)
Q Consensus 186 gE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~-----------------v~iN~~~t~~d-~~adl~i~~ 237 (258)
++.+|...-..=-.++++||++|++|+-|.-. |-+|.++--.+ -..++-|.+
T Consensus 259 ~d~hPl~v~~aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~g 328 (571)
T KOG1185|consen 259 PDNHPLNVSSARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDVAIQG 328 (571)
T ss_pred CCCCchhhhHHHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCceeee
No 255
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.87 E-value=60 Score=31.13 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=19.2
Q ss_pred EEEcCCCCCCCCcccEEEEeeccCcc
Q psy8970 218 LKCFFRKTKQNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 218 v~iN~~~t~~d~~adl~i~~~~~~~~ 243 (258)
|+|++..|.....||+.|..+-.+|.
T Consensus 190 ivIdPr~t~ta~~AD~~i~i~PGtD~ 215 (454)
T cd02755 190 VVVDPRFSELASKADEWIPIKPGTDL 215 (454)
T ss_pred EEECCCCChhhHhhCEecCCCCCcHH
Confidence 88888888888888887766554443
No 256
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.54 E-value=82 Score=26.65 Aligned_cols=29 Identities=24% Similarity=0.144 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhC---CcEEEEeCCccCcc
Q psy8970 30 FDKKIKVLSEWIDKA---KHVVLHTGAGISTS 58 (258)
Q Consensus 30 ~~~~l~~la~~i~~a---~~ivv~tGAGiS~~ 58 (258)
..+.|++++++|.++ .+-|++.|.|-|..
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 345677777777765 34458889998866
No 257
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.44 E-value=50 Score=26.59 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=11.7
Q ss_pred eecccCCcccccchh
Q psy8970 137 YVDQCNKCERQFVRK 151 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~ 151 (258)
..++|..||..+...
T Consensus 69 ~~~~C~~CG~~~~~~ 83 (135)
T PRK03824 69 AVLKCRNCGNEWSLK 83 (135)
T ss_pred eEEECCCCCCEEecc
Confidence 468999999877654
No 258
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=23.38 E-value=99 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 29 DFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 29 ~~~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+.++.+++.|++..+ |+++|+|-|.
T Consensus 43 ~I~~a~~~~~~~l~~ggr-l~~~GaG~Sg 70 (296)
T PRK12570 43 QIAQAVDKIVAAFKKGGR-LIYMGAGTSG 70 (296)
T ss_pred HHHHHHHHHHHHHHcCCe-EEEECCchhH
Confidence 344555566666776655 7899999885
No 259
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=23.34 E-value=1e+02 Score=27.07 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+..-.+.++++..+...+|+++||++|.
T Consensus 20 ~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~ 50 (251)
T cd04242 20 LGRLASLVEQIAELRNQGKEVILVSSGAVAA 50 (251)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCchhh
Confidence 3455555666666666666788887766554
No 260
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=23.32 E-value=53 Score=23.41 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=15.3
Q ss_pred ccccceeecccCCcccc
Q psy8970 131 ELHGNMYVDQCNKCERQ 147 (258)
Q Consensus 131 elHGsl~~~~C~~C~~~ 147 (258)
+.+|.+-+.+|..|+.+
T Consensus 12 ~p~s~Fl~VkCpdC~N~ 28 (67)
T COG2051 12 EPRSRFLRVKCPDCGNE 28 (67)
T ss_pred CCCceEEEEECCCCCCE
Confidence 78999999999999865
No 261
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=23.27 E-value=31 Score=30.54 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=32.6
Q ss_pred cEEEEeCCccCccCCCCCCCCCCCCcccccc----------CCCCccccccc---CCCCCHHHHHHHHHHHcCCC
Q psy8970 46 HVVLHTGAGISTSAGIPDFRGPNGVWTLEKK----------GIKPKVNISFD---DAVPTVTHMAILELVNRGKV 107 (258)
Q Consensus 46 ~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~----------~~~p~~~~~f~---~~~Pn~~H~~L~~L~~~g~~ 107 (258)
..+.+||+|+|++-|+||- |+-+.... -.-|- ...+. .-.|...++.++++++.|-.
T Consensus 31 ~ai~~sg~~~a~s~G~pD~----~~lt~~e~~~~~~~I~~~~~iPv-~vD~d~GyG~~~~~v~~tv~~~~~aG~a 100 (238)
T PF13714_consen 31 DAIATSGAGVAASLGYPDG----GLLTLTEMLAAVRRIARAVSIPV-IVDADTGYGNDPENVARTVRELERAGAA 100 (238)
T ss_dssp SEEEEHHHHHHHHTTS-SS----S-S-HHHHHHHHHHHHHHSSSEE-EEE-TTTSSSSHHHHHHHHHHHHHCT-S
T ss_pred CEEEechHHHHHHcCCCCC----CCCCHHHHHHHHHHHHhhhcCcE-EEEcccccCchhHHHHHHHHHHHHcCCc
Confidence 5689999999999999995 33332110 11111 11221 12377788888898887754
No 262
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=23.26 E-value=59 Score=32.23 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=15.9
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|++||++.
T Consensus 275 ~~~~l~~aDlvL~lG~~~~ 293 (571)
T PRK07710 275 ANMALYECDLLINIGARFD 293 (571)
T ss_pred HHHHHHhCCEEEEeCCCCC
Confidence 5566789999999999874
No 263
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=23.13 E-value=51 Score=28.01 Aligned_cols=31 Identities=26% Similarity=0.658 Sum_probs=20.6
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeec
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLH 179 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lr 179 (258)
..+|+.|+-.+..+.... .+..|| .||+.|.
T Consensus 113 ~y~C~~~~~r~sfdeA~~------~~F~Cp-----~Cg~~L~ 143 (176)
T COG1675 113 YYVCPNCHVKYSFDEAME------LGFTCP-----KCGEDLE 143 (176)
T ss_pred ceeCCCCCCcccHHHHHH------hCCCCC-----CCCchhh
Confidence 457888888887765432 134677 8998653
No 264
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=23.10 E-value=30 Score=21.74 Aligned_cols=8 Identities=25% Similarity=1.124 Sum_probs=5.7
Q ss_pred ccCCcccc
Q psy8970 140 QCNKCERQ 147 (258)
Q Consensus 140 ~C~~C~~~ 147 (258)
+|+.|+..
T Consensus 1 ~CP~C~~~ 8 (41)
T PF13453_consen 1 KCPRCGTE 8 (41)
T ss_pred CcCCCCcc
Confidence 58888764
No 265
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=23.09 E-value=81 Score=31.56 Aligned_cols=44 Identities=16% Similarity=-0.066 Sum_probs=32.8
Q ss_pred HHhccCCEEEEEecCceeE-------------------EEEcCCCCCCCCcccEEEEeeccCc
Q psy8970 199 YNSSIADLSICLGKCLLSF-------------------LKCFFRKTKQNNNTNLCGRVVKSTD 242 (258)
Q Consensus 199 ~~~~~~Dl~lvvGTSl~V~-------------------v~iN~~~t~~d~~adl~i~~~~~~~ 242 (258)
..+.++|++|++|+-.... |+|++..+.....||+.+..+-.++
T Consensus 358 ~di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i~Pgtd 420 (603)
T TIGR01973 358 ADIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFHPGLS 420 (603)
T ss_pred HHHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceeecCCcc
Confidence 4567899999999865433 8888888888888887766555544
No 266
>PRK14558 pyrH uridylate kinase; Provisional
Probab=23.08 E-value=1.3e+02 Score=26.02 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAG 54 (258)
+.++.-.++++++.++...+++++|+|
T Consensus 23 ~~i~~la~~i~~~~~~g~~viiV~GgG 49 (231)
T PRK14558 23 ERVNYLVNEIKSVVEYGFKIGIVIGAG 49 (231)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECcc
Confidence 334444444444444456788888887
No 267
>smart00463 SMR Small MutS-related domain.
Probab=22.94 E-value=1.6e+02 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.3
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
+.+.|+||.|-...
T Consensus 32 ~~~~II~G~G~~s~ 45 (80)
T smart00463 32 QKLVIITGKGKHSL 45 (80)
T ss_pred ceEEEEEcccCCCc
Confidence 57999999996544
No 268
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=22.90 E-value=47 Score=25.91 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=10.1
Q ss_pred eecccCCcccccch
Q psy8970 137 YVDQCNKCERQFVR 150 (258)
Q Consensus 137 ~~~~C~~C~~~~~~ 150 (258)
...+|..|++.+..
T Consensus 69 ~~~~C~~Cg~~~~~ 82 (114)
T PRK03681 69 AECWCETCQQYVTL 82 (114)
T ss_pred cEEEcccCCCeeec
Confidence 35689999976553
No 269
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=22.73 E-value=36 Score=20.87 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=8.9
Q ss_pred CCCCCCeecceE
Q psy8970 171 FRPCRGTLHDTI 182 (258)
Q Consensus 171 c~~Cgg~lrP~V 182 (258)
||.||.+|.|.-
T Consensus 4 Cp~C~nlL~p~~ 15 (35)
T PF02150_consen 4 CPECGNLLYPKE 15 (35)
T ss_dssp ETTTTSBEEEEE
T ss_pred CCCCCccceEcC
Confidence 458999987753
No 270
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.57 E-value=71 Score=30.80 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=20.7
Q ss_pred EEEcCCCCCCCCcccEEEEeeccCcc
Q psy8970 218 LKCFFRKTKQNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 218 v~iN~~~t~~d~~adl~i~~~~~~~~ 243 (258)
|+|++..|.....||+.|..+-.+|.
T Consensus 194 ividpr~s~ta~~Ad~~l~i~PGtD~ 219 (477)
T cd02759 194 IVVDPRLTWLAARADLWLPIRPGTDA 219 (477)
T ss_pred EEECCCCChhhHhhCeeeccCCCcHH
Confidence 88899999888889988876655554
No 271
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=22.44 E-value=93 Score=27.92 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
+.|++++++|.+|++|+++. -|.|...
T Consensus 118 ~~l~~av~~L~~A~rI~~~G-~g~S~~v 144 (281)
T COG1737 118 EALERAVELLAKARRIYFFG-LGSSGLV 144 (281)
T ss_pred HHHHHHHHHHHcCCeEEEEE-echhHHH
Confidence 56899999999999987665 7777553
No 272
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=22.43 E-value=1.8e+02 Score=25.73 Aligned_cols=42 Identities=7% Similarity=-0.002 Sum_probs=28.3
Q ss_pred CCCcCCChHHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCC
Q psy8970 20 LAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (258)
Q Consensus 20 ~~e~~~~~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGI 61 (258)
.|-.........+.++++.+.|.+-+.|||+|-=..+..-.|
T Consensus 9 ~p~~~~~~~~~~~~l~~~~~~l~~p~~IiviSaHw~~~~~~i 50 (253)
T cd07363 9 SPMLALEDNPATAFLRELGKELPKPKAILVISAHWETRGPTV 50 (253)
T ss_pred CcccccCCChHHHHHHHHHHhcCCCCEEEEEcCCcccCCCeE
Confidence 343333333334888899988888899999988777753333
No 273
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=22.36 E-value=79 Score=19.09 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=7.0
Q ss_pred ccCCcccccc
Q psy8970 140 QCNKCERQFV 149 (258)
Q Consensus 140 ~C~~C~~~~~ 149 (258)
.|..|+.+..
T Consensus 2 ~C~~Cg~~~~ 11 (32)
T PF03604_consen 2 ICGECGAEVE 11 (32)
T ss_dssp BESSSSSSE-
T ss_pred CCCcCCCeeE
Confidence 5888987755
No 274
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=22.27 E-value=48 Score=26.61 Aligned_cols=36 Identities=28% Similarity=0.685 Sum_probs=22.9
Q ss_pred ceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecc
Q psy8970 135 NMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHD 180 (258)
Q Consensus 135 sl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP 180 (258)
.-...+|..|+..+.+..... .....|+ .|+|.|++
T Consensus 120 ~~~~~~C~~C~~~~~r~~~~~-----~~~~~C~-----~C~~~l~~ 155 (157)
T PF10263_consen 120 KKYVYRCPSCGREYKRHRRSK-----RKRYRCG-----RCGGPLVQ 155 (157)
T ss_pred cceEEEcCCCCCEeeeecccc-----hhhEECC-----CCCCEEEE
Confidence 456789999998765443221 1123466 89998875
No 275
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=22.21 E-value=1.5e+02 Score=21.83 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
+.=+..++++.+++.+++.++++-=.|+++.
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~ 34 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVDYNGLSAN 34 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEECTTSCHH
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHH
Confidence 3445678999999999999999999999876
No 276
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=22.05 E-value=50 Score=25.76 Aligned_cols=36 Identities=11% Similarity=-0.063 Sum_probs=20.2
Q ss_pred hccCCEEEEE------ecCceeE---EEEcCCCCCCCCcccEEEE
Q psy8970 201 SSIADLSICL------GKCLLSF---LKCFFRKTKQNNNTNLCGR 236 (258)
Q Consensus 201 ~~~~Dl~lvv------GTSl~V~---v~iN~~~t~~d~~adl~i~ 236 (258)
++.-|-+++| |+|..+- .+-|+.-+.-|+..|-.|.
T Consensus 53 L~dGDsV~lIKDLkVKGss~~lK~GTkvknIrL~~~~h~Idckid 97 (112)
T COG2824 53 LADGDSVTLIKDLKVKGSSKVLKQGTKVKNIRLVEGDHNIDCKID 97 (112)
T ss_pred eccCCeEEEEEeeeecCCcceeecccEEeeEEecCCCcceeeecC
Confidence 3445555544 6665444 5666666666665555543
No 277
>PRK10220 hypothetical protein; Provisional
Probab=22.04 E-value=59 Score=25.45 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=39.1
Q ss_pred cccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEEEcCCCCChH---HHHHHHHHhccCCEEEEE-----
Q psy8970 139 DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQK---DINMGDYNSSIADLSICL----- 210 (258)
Q Consensus 139 ~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv~fgE~~~~~---~~~~a~~~~~~~Dl~lvv----- 210 (258)
-.|++|+..|..+.- ....|| .|+.-..|.-. ..+.. ..+..-..++.-|-+.+|
T Consensus 4 P~CP~C~seytY~d~--------~~~vCp-----eC~hEW~~~~~----~~~~~~~~vkDsnG~~L~dGDsV~viKDLkV 66 (111)
T PRK10220 4 PHCPKCNSEYTYEDN--------GMYICP-----ECAHEWNDAEP----AQESDELIVKDANGNLLADGDSVTIVKDLKV 66 (111)
T ss_pred CcCCCCCCcceEcCC--------CeEECC-----cccCcCCcccc----ccccCCceEEcCCCCCccCCCEEEEEeeccc
Confidence 468889877765431 123576 88877777631 11111 111112234566776665
Q ss_pred -ecCceeE---EEEcCCCCCCCC
Q psy8970 211 -GKCLLSF---LKCFFRKTKQNN 229 (258)
Q Consensus 211 -GTSl~V~---v~iN~~~t~~d~ 229 (258)
|+|..+- .+-|+.-+.-|+
T Consensus 67 KGss~~~K~GTkvknIrL~d~~h 89 (111)
T PRK10220 67 KGSSSMLKIGTKVKNIRLVEGDH 89 (111)
T ss_pred cccccceeCccEEEEEEecCCCc
Confidence 6665544 666666554333
No 278
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=22.01 E-value=1.4e+02 Score=27.22 Aligned_cols=36 Identities=22% Similarity=0.503 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCCC-------CCCCCCC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGI-------PDFRGPN 68 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SGI-------PdFR~~~ 68 (258)
..++..++.+++.-++ |..|||-|---|+ |||--+.
T Consensus 48 ~Av~~~~~~l~~GGRL-iY~GAGTSGRLGvlDAsEcPPTfgv~~ 90 (298)
T COG2103 48 AAVDIIAAALKQGGRL-IYIGAGTSGRLGVLDASECPPTFGVPP 90 (298)
T ss_pred HHHHHHHHHHHcCCeE-EEEcCCcccchhccchhhCCCCcCCCh
Confidence 3444555555555555 7899999988886 8886654
No 279
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=21.92 E-value=59 Score=33.18 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=4.4
Q ss_pred CCCCCCC
Q psy8970 170 GFRPCRG 176 (258)
Q Consensus 170 ~c~~Cgg 176 (258)
.|+.||.
T Consensus 43 fC~~CG~ 49 (645)
T PRK14559 43 HCPNCGA 49 (645)
T ss_pred cccccCC
Confidence 3667773
No 280
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.85 E-value=77 Score=25.14 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHh---CCcEEEEeCCccCcc
Q psy8970 32 KKIKVLSEWIDK---AKHVVLHTGAGISTS 58 (258)
Q Consensus 32 ~~l~~la~~i~~---a~~ivv~tGAGiS~~ 58 (258)
+.|+++++++.+ ....|++.|+|=|..
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~ 48 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSAA 48 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhhh
Confidence 445555555554 467889999998854
No 281
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=21.70 E-value=1.5e+02 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAG 54 (258)
+.+..-.+.++++.....++|++.|||
T Consensus 23 ~~i~~~a~~i~~~~~~~~~~viVhGgG 49 (231)
T cd04254 23 EVLNRIAREIKEVVDLGVEVAIVVGGG 49 (231)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 344444455555544456899999998
No 282
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=21.60 E-value=68 Score=25.96 Aligned_cols=16 Identities=31% Similarity=0.895 Sum_probs=13.6
Q ss_pred cceeecccCCcccccc
Q psy8970 134 GNMYVDQCNKCERQFV 149 (258)
Q Consensus 134 Gsl~~~~C~~C~~~~~ 149 (258)
|.+.-.+|.+||+.|.
T Consensus 25 ~kl~g~kC~~CG~v~~ 40 (140)
T COG1545 25 GKLLGTKCKKCGRVYF 40 (140)
T ss_pred CcEEEEEcCCCCeEEc
Confidence 7788899999998764
No 283
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=21.59 E-value=78 Score=20.28 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=14.0
Q ss_pred HHHHHHHhCCcEEEEeCCccCcc
Q psy8970 36 VLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 36 ~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
+.+..+..|---+|-.|||++..
T Consensus 2 e~a~Rl~~AgF~~i~~g~g~~~~ 24 (41)
T PF11590_consen 2 ETAERLRSAGFATIGSGAGLPSS 24 (41)
T ss_dssp HHHHHHHHTT-EEECTTS-----
T ss_pred hHHHHHHHHhHHHhccCccccch
Confidence 45777888888889999998764
No 284
>PHA02768 hypothetical protein; Provisional
Probab=21.19 E-value=71 Score=21.88 Aligned_cols=40 Identities=15% Similarity=0.444 Sum_probs=21.8
Q ss_pred cccCCcccccchhhhh-hhccccCCCCCCCCCCCCCCC-CeecceEE
Q psy8970 139 DQCNKCERQFVRKSAT-NSVGQKNLNISCPYRGFRPCR-GTLHDTIL 183 (258)
Q Consensus 139 ~~C~~C~~~~~~~~~~-~~~~~~~~~~~C~~~~c~~Cg-g~lrP~Vv 183 (258)
.+|..||+.|...... ..+.....+.+|. .|+ ...+++.+
T Consensus 6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~-----~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPICGEIYIKRKSMITHLRKHNTNLKLS-----NCKRISLRTGEY 47 (55)
T ss_pred cCcchhCCeeccHHHHHHHHHhcCCcccCC-----cccceeccccee
Confidence 4899999998765432 2222221244565 776 33344443
No 285
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=21.17 E-value=1.4e+02 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCccCCC
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGI 61 (258)
+++-.+.++++....+.+|++.||| |...|.
T Consensus 26 i~~~a~~i~~~~~~~~~vviV~G~G-s~~~~~ 56 (233)
T TIGR02075 26 LNRIANEIKELVKMGIEVGIVIGGG-NIFRGV 56 (233)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCC-HHHHHH
Confidence 3444444444444456899999998 544454
No 286
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.02 E-value=1.3e+02 Score=24.91 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccc-eeecccCCcccccch
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGN-MYVDQCNKCERQFVR 150 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGs-l~~~~C~~C~~~~~~ 150 (258)
....+..++.|..|++.|.+..+-..| + +... ..++-|.. -.++.|..||+....
T Consensus 57 ~is~aTVYRtL~~L~e~Glv~~~~~~~--~-~~~~-----~~~~~~~h~h~H~iC~~CGki~~i 112 (169)
T PRK11639 57 QAKPPTVYRALDFLLEQGFVHKVESTN--S-YVLC-----HLFDQPTHTSAMFICDRCGAVKEE 112 (169)
T ss_pred CCCcchHHHHHHHHHHCCCEEEEecCC--c-EEEe-----ccCCCCCCCCCeEEeCCCCCEEEe
Confidence 456677899999999999886553222 1 1111 01223222 245899999998654
No 287
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=1.3e+02 Score=31.03 Aligned_cols=39 Identities=8% Similarity=0.098 Sum_probs=23.8
Q ss_pred CCCCCCCeecceEEEc--CCCC---ChHHHHHHHHHhccCCEEEEEec
Q psy8970 170 GFRPCRGTLHDTILDW--EHNL---PQKDINMGDYNSSIADLSICLGK 212 (258)
Q Consensus 170 ~c~~Cgg~lrP~Vv~f--gE~~---~~~~~~~a~~~~~~~Dl~lvvGT 212 (258)
.||.|| |.+-|+ ++.. ....+..|.+.+++.-.+=+-|.
T Consensus 175 aCp~CG----P~~~l~~~~g~~~~~~~~ai~~a~klL~~G~IvAIKGi 218 (750)
T COG0068 175 ACPKCG----PHLFLVNHDGEAIAEANEAIRKAAKLLKVGKIVAIKGI 218 (750)
T ss_pred cCcccC----CCeEEEcCCCcchhhhhHHHHHHHHHHhhCCEEEEeec
Confidence 378997 444444 3332 22256777788887777766665
No 288
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.77 E-value=1.3e+02 Score=25.14 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=16.6
Q ss_pred HHHHHHHhCCcEEEEeCCccCccCCCCCC
Q psy8970 36 VLSEWIDKAKHVVLHTGAGISTSAGIPDF 64 (258)
Q Consensus 36 ~la~~i~~a~~ivv~tGAGiS~~SGIPdF 64 (258)
+.++--.+...=||++|||.++. +|-+
T Consensus 48 ~ya~~a~~~g~~viIAgAGgAAH--LPGm 74 (162)
T COG0041 48 EYAEEAEERGVKVIIAGAGGAAH--LPGM 74 (162)
T ss_pred HHHHHHHHCCCeEEEecCcchhh--cchh
Confidence 33333344455699999999754 5544
No 289
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=20.49 E-value=1.1e+02 Score=28.51 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.|++|++.+.++++.+++.|.|+..
T Consensus 228 ~~~i~~la~~l~~a~~~~i~~g~g~~~ 254 (421)
T TIGR03129 228 KEKILELAEILKNAKFGVIFFGLGLTS 254 (421)
T ss_pred HHHHHHHHHHHHhCCceEEEEeccccc
Confidence 456889999999999999999998863
No 290
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=20.39 E-value=50 Score=30.11 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.7
Q ss_pred cEEEEeCCccCccCCCCCC
Q psy8970 46 HVVLHTGAGISTSAGIPDF 64 (258)
Q Consensus 46 ~ivv~tGAGiS~~SGIPdF 64 (258)
..+.+||+|+|.+-|+||-
T Consensus 40 ~ai~~ss~~~a~s~G~pD~ 58 (285)
T TIGR02320 40 DGIWSSSLTDSTSRGVPDI 58 (285)
T ss_pred CEEEechHHHHHHCCCCCc
Confidence 4778999999998999994
No 291
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.33 E-value=1.4e+02 Score=22.94 Aligned_cols=23 Identities=0% Similarity=-0.424 Sum_probs=18.7
Q ss_pred EEEcCCCCCCCCcccEEEEeecc
Q psy8970 218 LKCFFRKTKQNNNTNLCGRVVKS 240 (258)
Q Consensus 218 v~iN~~~t~~d~~adl~i~~~~~ 240 (258)
.+.|...++..+.+|++|...++
T Consensus 79 ~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 79 GLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred EEECCCCCcHHHhCCEEEEccCC
Confidence 67777788888899999987665
No 292
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=20.12 E-value=55 Score=24.99 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=10.2
Q ss_pred cEEEEeCCccCcc
Q psy8970 46 HVVLHTGAGISTS 58 (258)
Q Consensus 46 ~ivv~tGAGiS~~ 58 (258)
+|++++|+|+|+.
T Consensus 2 ~Ill~C~~GaSSs 14 (99)
T cd05565 2 NVLVLCAGGGTSG 14 (99)
T ss_pred EEEEECCCCCCHH
Confidence 4888999997754
No 293
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.08 E-value=1.3e+02 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCcEEEEe
Q psy8970 25 DSKEDFDKKIKVLSEWIDKAKHVVLHT 51 (258)
Q Consensus 25 ~~~~~~~~~l~~la~~i~~a~~ivv~t 51 (258)
++++++.++++++.+-+.+-+.++|+|
T Consensus 39 ~~~~~~~~~l~~~i~~~~~~~~vivlt 65 (116)
T TIGR00824 39 ENAETLQEKYNAALADLDTEEEVLFLV 65 (116)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 556778888887777776667788887
Done!