Query psy8970
Match_columns 258
No_of_seqs 194 out of 1292
Neff 7.0
Searched_HMMs 29240
Date Sat Aug 17 00:23:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8970.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8970hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k35_A NAD-dependent deacetyla 100.0 1.6E-78 5.5E-83 551.4 16.0 254 2-255 2-277 (318)
2 3pki_A NAD-dependent deacetyla 100.0 1.3E-77 4.6E-82 550.1 14.8 255 2-256 2-278 (355)
3 3u31_A SIR2A, transcriptional 100.0 2.5E-61 8.6E-66 435.2 13.2 221 16-241 16-271 (290)
4 1yc5_A NAD-dependent deacetyla 100.0 8.3E-61 2.8E-65 423.4 13.1 200 34-241 3-234 (246)
5 3glr_A NAD-dependent deacetyla 100.0 5.9E-61 2E-65 431.5 12.1 208 33-247 10-260 (285)
6 1ma3_A SIR2-AF2, transcription 100.0 2.1E-60 7.2E-65 422.4 15.0 204 31-242 2-238 (253)
7 3riy_A NAD-dependent deacetyla 100.0 1.7E-60 6E-65 427.1 12.7 204 33-241 10-266 (273)
8 4iao_A NAD-dependent histone d 100.0 5.1E-60 1.7E-64 447.8 13.3 220 33-253 173-460 (492)
9 2hjh_A NAD-dependent histone d 100.0 1.7E-59 5.9E-64 434.4 15.1 220 33-254 35-323 (354)
10 1q1a_A HST2 protein; ternary c 100.0 8.5E-59 2.9E-63 419.4 16.7 210 29-243 3-270 (289)
11 1m2k_A Silent information regu 100.0 1.9E-59 6.6E-64 415.4 11.6 197 35-242 3-232 (249)
12 1q14_A HST2 protein; histone d 100.0 1.4E-58 4.7E-63 428.5 15.4 219 20-243 2-278 (361)
13 1j8f_A SIRT2, sirtuin 2, isofo 100.0 2.7E-57 9.4E-62 414.9 16.2 208 33-246 30-298 (323)
14 1s5p_A NAD-dependent deacetyla 100.0 1.8E-56 6.3E-61 393.2 9.1 186 44-242 1-222 (235)
15 2k5c_A Uncharacterized protein 71.9 3.3 0.00011 29.7 3.2 55 137-202 7-79 (95)
16 3cf4_G Acetyl-COA decarboxylas 70.9 3.1 0.00011 33.3 3.4 23 34-56 24-46 (170)
17 6rxn_A Rubredoxin; electron tr 67.4 4 0.00014 26.0 2.6 36 136-176 2-38 (46)
18 2lcq_A Putative toxin VAPC6; P 60.4 3 0.0001 33.2 1.4 28 138-179 132-159 (165)
19 1e2b_A Enzyme IIB-cellobiose; 58.4 3 0.0001 31.0 0.9 14 45-58 4-17 (106)
20 2v3b_B Rubredoxin 2, rubredoxi 50.9 10 0.00035 24.9 2.5 15 137-151 2-16 (55)
21 1e8j_A Rubredoxin; iron-sulfur 50.4 11 0.00037 24.5 2.5 15 137-151 2-16 (52)
22 4g9i_A Hydrogenase maturation 47.3 13 0.00045 37.1 3.7 39 170-212 180-221 (772)
23 1twf_L ABC10-alpha, DNA-direct 47.1 12 0.00041 25.9 2.5 26 138-176 28-53 (70)
24 2kdx_A HYPA, hydrogenase/ureas 45.3 9 0.00031 28.9 1.7 28 136-177 71-99 (119)
25 3fxa_A SIS domain protein; str 45.1 12 0.00042 30.0 2.7 90 32-121 32-135 (201)
26 3eya_A Pyruvate dehydrogenase 45.0 17 0.00057 34.4 4.0 26 31-56 188-213 (549)
27 3a43_A HYPD, hydrogenase nicke 45.0 8.9 0.0003 29.9 1.7 22 131-152 63-84 (139)
28 1tvm_A PTS system, galactitol- 45.0 6.1 0.00021 29.5 0.7 14 45-58 22-35 (113)
29 2yva_A DNAA initiator-associat 44.6 16 0.00056 29.0 3.4 31 28-59 25-55 (196)
30 4ayb_P DNA-directed RNA polyme 44.0 10 0.00036 24.2 1.6 16 138-153 3-18 (48)
31 2kn9_A Rubredoxin; metalloprot 43.5 15 0.0005 26.2 2.5 16 136-151 25-40 (81)
32 4rxn_A Rubredoxin; electron tr 43.4 27 0.00091 22.8 3.6 15 137-151 2-16 (54)
33 2vbi_A Pyruvate decarboxylase; 41.8 25 0.00085 33.2 4.6 31 27-57 192-222 (566)
34 1dx8_A Rubredoxin; electron tr 40.9 16 0.00053 25.3 2.2 17 135-151 4-20 (70)
35 3sho_A Transcriptional regulat 40.9 24 0.00082 27.7 3.8 89 32-121 27-130 (187)
36 1m3s_A Hypothetical protein YC 40.8 16 0.00055 28.8 2.7 83 32-119 25-120 (186)
37 2wvg_A PDC, pyruvate decarboxy 40.7 24 0.00083 33.3 4.4 30 28-57 193-222 (568)
38 3cf4_G Acetyl-COA decarboxylas 39.6 9.4 0.00032 30.4 1.1 16 199-214 103-118 (170)
39 1ytl_A Acetyl-COA decarboxylas 39.4 16 0.00056 29.5 2.5 22 34-56 24-46 (174)
40 1ovm_A Indole-3-pyruvate decar 37.6 22 0.00077 33.3 3.6 30 27-56 192-221 (552)
41 1x92_A APC5045, phosphoheptose 37.4 27 0.00091 27.8 3.6 30 29-59 30-59 (199)
42 2xig_A Ferric uptake regulatio 37.2 25 0.00084 27.3 3.2 53 88-151 58-112 (150)
43 1jeo_A MJ1247, hypothetical pr 37.1 20 0.00068 28.0 2.7 84 31-119 27-123 (180)
44 3vth_A Hydrogenase maturation 36.8 20 0.00068 35.8 3.1 38 170-211 185-222 (761)
45 3hww_A 2-succinyl-5-enolpyruvy 36.8 37 0.0013 32.0 5.0 42 196-237 271-328 (556)
46 1ybh_A Acetolactate synthase, 36.6 27 0.00091 33.2 4.0 26 31-56 201-226 (590)
47 2xhz_A KDSD, YRBH, arabinose 5 36.3 15 0.0005 28.9 1.8 90 32-121 36-139 (183)
48 2l2q_A PTS system, cellobiose- 36.0 14 0.00047 27.2 1.4 13 46-58 6-18 (109)
49 2vk8_A Pyruvate decarboxylase 35.9 24 0.00083 33.2 3.5 29 28-56 195-223 (563)
50 1lko_A Rubrerythrin all-iron(I 35.9 14 0.00049 30.2 1.7 15 136-150 153-167 (191)
51 1yk4_A Rubredoxin, RD; electro 35.7 25 0.00085 22.7 2.5 14 138-151 2-15 (52)
52 2vbf_A Branched-chain alpha-ke 35.6 21 0.00073 33.7 3.1 28 31-58 215-242 (570)
53 2nxw_A Phenyl-3-pyruvate decar 35.5 25 0.00085 33.3 3.5 30 27-56 205-234 (565)
54 4feg_A Pyruvate oxidase; carba 35.4 27 0.00091 33.4 3.7 27 30-56 198-224 (603)
55 1t9b_A Acetolactate synthase, 35.2 29 0.001 33.8 4.1 26 31-56 276-301 (677)
56 2ywx_A Phosphoribosylaminoimid 34.9 18 0.00061 29.0 2.0 76 35-122 41-116 (157)
57 1vim_A Hypothetical protein AF 34.9 22 0.00076 28.6 2.7 83 32-119 35-130 (200)
58 1ytl_A Acetyl-COA decarboxylas 34.9 15 0.00052 29.7 1.7 14 202-215 107-120 (174)
59 1vkr_A Mannitol-specific PTS s 34.7 8.8 0.0003 29.3 0.2 16 44-59 13-28 (125)
60 1s24_A Rubredoxin 2; electron 34.6 21 0.00072 25.7 2.2 16 136-151 33-48 (87)
61 3nbm_A PTS system, lactose-spe 34.0 11 0.00038 28.1 0.6 15 44-58 6-20 (108)
62 1ozh_A ALS, acetolactate synth 33.8 30 0.001 32.8 3.7 26 31-56 194-219 (566)
63 3cvj_A Putative phosphoheptose 33.3 40 0.0014 27.9 4.1 32 28-60 26-57 (243)
64 2q28_A Oxalyl-COA decarboxylas 33.1 23 0.00078 33.4 2.8 26 31-56 198-223 (564)
65 3eya_A Pyruvate dehydrogenase 32.0 26 0.0009 33.0 3.0 41 197-237 259-310 (549)
66 2c31_A Oxalyl-COA decarboxylas 31.9 25 0.00086 33.2 2.9 26 31-56 200-225 (568)
67 1v5e_A Pyruvate oxidase; oxido 30.4 36 0.0012 32.4 3.7 24 32-55 193-216 (590)
68 1tk9_A Phosphoheptose isomeras 30.4 37 0.0013 26.5 3.3 30 30-60 28-57 (188)
69 3czc_A RMPB; alpha/beta sandwi 30.2 11 0.00038 27.8 0.0 14 45-58 19-32 (110)
70 1nri_A Hypothetical protein HI 29.6 32 0.0011 29.9 3.0 28 32-60 59-86 (306)
71 3pwf_A Rubrerythrin; non heme 29.6 22 0.00076 28.6 1.8 13 137-149 137-149 (170)
72 2xbl_A Phosphoheptose isomeras 29.5 45 0.0015 26.3 3.7 29 30-59 34-62 (198)
73 3l3s_A Enoyl-COA hydratase/iso 29.2 43 0.0015 28.4 3.7 61 1-61 1-67 (263)
74 2iht_A Carboxyethylarginine sy 28.9 30 0.001 32.8 2.8 27 30-56 202-228 (573)
75 2uz1_A Benzaldehyde lyase; thi 28.9 30 0.001 32.6 2.8 26 31-56 191-216 (563)
76 2pan_A Glyoxylate carboligase; 28.4 31 0.0011 33.0 2.9 26 31-56 213-238 (616)
77 1twd_A Copper homeostasis prot 28.3 29 0.00098 30.0 2.4 27 32-58 156-182 (256)
78 2i2w_A Phosphoheptose isomeras 26.9 48 0.0016 26.8 3.4 18 40-58 60-77 (212)
79 3nwy_A Uridylate kinase; allos 26.4 55 0.0019 28.4 3.9 29 26-54 70-98 (281)
80 2x7j_A 2-succinyl-5-enolpyruvy 26.3 31 0.0011 32.9 2.5 26 32-57 231-256 (604)
81 3rgo_A Protein-tyrosine phosph 25.4 93 0.0032 23.2 4.7 32 27-58 72-103 (157)
82 2pgn_A Cyclohexane-1,2-dione h 25.3 36 0.0012 32.4 2.7 25 32-56 193-217 (589)
83 1q6z_A BFD, BFDC, benzoylforma 25.2 32 0.0011 32.1 2.3 25 32-56 188-212 (528)
84 3brc_A Conserved protein of un 25.2 45 0.0015 26.4 2.7 23 32-54 24-46 (156)
85 4feg_A Pyruvate oxidase; carba 25.1 34 0.0012 32.7 2.5 19 197-215 270-288 (603)
86 2iht_A Carboxyethylarginine sy 24.6 81 0.0028 29.7 5.1 41 197-237 281-337 (573)
87 1mzb_A Ferric uptake regulatio 24.5 37 0.0012 25.7 2.1 53 88-151 50-104 (136)
88 3eyy_A Putative iron uptake re 24.5 34 0.0012 26.3 2.0 53 88-151 49-103 (145)
89 3emu_A Leucine rich repeat and 24.5 1E+02 0.0035 23.7 4.9 34 28-61 67-104 (161)
90 3utn_X Thiosulfate sulfurtrans 24.4 15 0.0005 32.8 -0.2 54 28-81 255-320 (327)
91 3fkj_A Putative phosphosugar i 24.1 48 0.0016 29.4 3.1 97 25-122 18-133 (347)
92 1ybh_A Acetolactate synthase, 23.8 50 0.0017 31.3 3.4 42 196-237 271-328 (590)
93 3s4e_A Dual specificity protei 23.2 1.1E+02 0.0036 22.8 4.6 32 29-60 66-97 (144)
94 1x61_A Thyroid receptor intera 23.1 46 0.0016 21.8 2.2 43 134-181 1-46 (72)
95 3lq1_A 2-succinyl-5-enolpyruvy 22.8 53 0.0018 31.1 3.3 26 31-57 211-236 (578)
96 3fau_A NEDD4-binding protein 2 22.8 43 0.0015 23.1 2.1 22 44-65 34-55 (82)
97 2gmg_A Hypothetical protein PF 22.7 56 0.0019 24.3 2.7 13 136-148 65-77 (105)
98 2w57_A Ferric uptake regulatio 22.6 51 0.0018 25.4 2.7 53 88-151 49-103 (150)
99 3mwm_A ZUR, putative metal upt 22.5 57 0.0019 24.8 2.9 56 88-151 45-100 (139)
100 1wig_A KIAA1808 protein; LIM d 22.2 40 0.0014 22.5 1.8 17 134-150 1-17 (73)
101 2epq_A POZ-, at HOOK-, and zin 22.1 52 0.0018 18.7 2.1 21 132-152 4-24 (45)
102 2bru_C NAD(P) transhydrogenase 21.9 31 0.0011 28.2 1.2 29 30-58 16-44 (186)
103 1vd4_A Transcription initiatio 21.8 40 0.0014 21.3 1.6 40 133-177 9-48 (62)
104 2a1f_A Uridylate kinase; PYRH, 21.4 76 0.0026 26.4 3.7 29 27-55 30-58 (247)
105 2yy8_A ATRM56, UPF0106 protein 21.4 54 0.0019 27.1 2.6 96 93-217 18-114 (201)
106 2img_A Dual specificity protei 21.3 1.2E+02 0.004 22.3 4.5 31 28-58 73-103 (151)
107 2o03_A Probable zinc uptake re 21.3 62 0.0021 24.2 2.9 52 88-150 42-95 (131)
108 3eua_A Putative fructose-amino 21.2 30 0.001 30.4 1.1 92 30-122 9-118 (329)
109 4a7w_A Uridylate kinase; trans 21.1 83 0.0028 26.3 3.9 29 26-54 28-56 (240)
110 1z9d_A Uridylate kinase, UK, U 20.9 78 0.0027 26.5 3.7 28 27-54 29-56 (252)
111 3etn_A Putative phosphosugar i 20.8 45 0.0015 27.3 2.1 89 32-121 42-151 (220)
112 3ezz_A Dual specificity protei 20.7 1.4E+02 0.0047 22.1 4.8 32 28-59 65-96 (144)
113 2d9i_A NEDD4-binding protein 2 20.6 53 0.0018 23.3 2.2 18 45-62 43-60 (96)
114 3ot6_A Enoyl-COA hydratase/iso 20.5 95 0.0032 25.6 4.1 34 28-61 31-64 (232)
115 3ek6_A Uridylate kinase; UMPK 20.3 1.1E+02 0.0038 25.5 4.6 28 27-54 31-58 (243)
116 1ozh_A ALS, acetolactate synth 20.3 84 0.0029 29.6 4.2 41 197-237 268-322 (566)
No 1
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-78 Score=551.40 Aligned_cols=254 Identities=48% Similarity=0.829 Sum_probs=215.5
Q ss_pred chhhcccCCCCCCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCc
Q psy8970 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPK 81 (258)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~ 81 (258)
|+|||++||+|+|||+||.||++|+++++++++++|+++|++|++|||+|||||||+|||||||+++|+|+..++..+|+
T Consensus 2 s~~ya~~l~~~~~~g~~~~~e~~d~p~~l~~~i~~l~~~i~~a~~ivvlTGAGISteSGIPdFR~~~Glw~~~~~~~~p~ 81 (318)
T 3k35_A 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPK 81 (318)
T ss_dssp -------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCSCEEEEECGGGSGGGTCCCSSSTTCHHHHHTTTCCCC
T ss_pred ccchhhhCCcccccCccCCccccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccChhhCCCccccCCCcchhhhccCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877777899
Q ss_pred ccccccCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccC
Q psy8970 82 VNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKN 161 (258)
Q Consensus 82 ~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~ 161 (258)
+.|.|.+++||.+|++|++|+++|++.+||||||||||+|||+++++|+|||||+++.+|+.|++.|.++.........+
T Consensus 82 ~~~~f~~a~Pn~~H~aLa~Le~~g~~~~viTQNIDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~~~~~~p 161 (318)
T 3k35_A 82 FDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKA 161 (318)
T ss_dssp CSSCTTTCCCCHHHHHHHHHHHTTCCCEEEECCCSCHHHHBTCCGGGEEETTCCTTEEEETTTCCEEECSSCCSCCSSCE
T ss_pred HHHHhhhCCCCHHHHHHHHHHHcCCceEEEEecccchHhhcCCCccCEEEeCCCCCeeEeCCCCCccchHHhhhhcccCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999988765443332223
Q ss_pred CCCCCCC---CCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcC
Q psy8970 162 LNISCPY---RGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFF 222 (258)
Q Consensus 162 ~~~~C~~---~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~ 222 (258)
+++.|+. ..|+.|||.|||+||||||++|.+.++.|.+++++||++|||||||+|+ |+||+
T Consensus 162 ~~~~C~~~~~~~c~~CgG~LRPdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~ 241 (318)
T 3k35_A 162 TGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNL 241 (318)
T ss_dssp EEEECCC--------CCCEEEECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECS
T ss_pred CCCcCcccccccccCcCCeeCCCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECC
Confidence 3345653 4577899999999999999999999999999999999999999999999 99999
Q ss_pred CCCCCCCcccEEEEeeccCccccc---cccccCccc
Q psy8970 223 RKTKQNNNTNLCGRVVKSTDSTRR---CRVRIPARA 255 (258)
Q Consensus 223 ~~t~~d~~adl~i~~~~~~~~~~~---~~~~~~~~~ 255 (258)
++|+.|+.+|++|++.+++..... ..|.+|.|-
T Consensus 242 ~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~~~ 277 (318)
T 3k35_A 242 QPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWD 277 (318)
T ss_dssp SCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCCCC
T ss_pred CCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999887765443 488999885
No 2
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=100.00 E-value=1.3e-77 Score=550.09 Aligned_cols=255 Identities=47% Similarity=0.829 Sum_probs=221.3
Q ss_pred chhhcccCCCCCCCCCCCCCCcCCChHHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCc
Q psy8970 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPK 81 (258)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~ 81 (258)
|+|||++||+|+|||+||.||++|+++++++++++|+++|++|++|||+|||||||+|||||||+++|+|+....+.+|.
T Consensus 2 s~~ya~~ls~~~~kg~~g~~E~~D~p~~l~~~i~~la~~i~~a~~iVvlTGAGISteSGIPDFR~~~Glw~~~~~~~~p~ 81 (355)
T 3pki_A 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGIPDFRGPHGVWTMEERGLAPK 81 (355)
T ss_dssp -----------CCCCSCSCCCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECGGGSGGGTCCCSSSTTCHHHHHHTTCCCC
T ss_pred ccchhhhCCcccccCcCCCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEeccccchhhCCCccccCCCccchhhccCChH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877777899
Q ss_pred ccccccCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccC
Q psy8970 82 VNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKN 161 (258)
Q Consensus 82 ~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~ 161 (258)
+.|.|.+++||.+|++|++|+++|++.+||||||||||++||+++++|+|||||++..+|+.|++.|.++.....+...+
T Consensus 82 ~~~~f~~a~Pn~~H~aLa~Le~~g~l~~viTQNIDgLh~rAG~~~~~VieLHGsl~~~~C~~C~~~~~~~~~~~~~~~~~ 161 (355)
T 3pki_A 82 FDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVRSGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKA 161 (355)
T ss_dssp CSSCTTTCCCCHHHHHHHHHHHTTCCSEEEECCCSCHHHHEEEEGGGEEETTCCTTEEEETTTCCEEEBSSCCSCCSSCE
T ss_pred HHHHHhhCCCCHHHHHHHHHHHcCCCcEEEEecccchHhhcCCCcccEEEeCCCCCceeeCCCCCccchHHhhhhcccCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999988765443332222
Q ss_pred CCCCCCC---CCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcC
Q psy8970 162 LNISCPY---RGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFF 222 (258)
Q Consensus 162 ~~~~C~~---~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~ 222 (258)
..+.|+. ..|+.|||.|||+||||||++|.+.++.|.+++++||++|||||||+|+ |+||+
T Consensus 162 ~~~~C~~~~~~~~~~CgG~LRPdVV~FGE~lP~~~~~~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~ 241 (355)
T 3pki_A 162 TGRLCTVAKARGLRACRGELRDTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNL 241 (355)
T ss_dssp EEEECCCCCBTTBCCCCCEEEECCCCTTSCCCHHHHHHHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECS
T ss_pred CCCccccccccccccCCCccCCCEEECCCcCCHHHHHHHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECC
Confidence 2345643 4577999999999999999999999999999999999999999999999 99999
Q ss_pred CCCCCCCcccEEEEeeccCcccc---ccccccCcccc
Q psy8970 223 RKTKQNNNTNLCGRVVKSTDSTR---RCRVRIPARAE 256 (258)
Q Consensus 223 ~~t~~d~~adl~i~~~~~~~~~~---~~~~~~~~~~~ 256 (258)
++|+.|..+|++|++.+++.... ...|.+|.|-+
T Consensus 242 ~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~~~~ 278 (355)
T 3pki_A 242 QPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDG 278 (355)
T ss_dssp SCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCCCCS
T ss_pred CCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999988776654 44899998853
No 3
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=100.00 E-value=2.5e-61 Score=435.23 Aligned_cols=221 Identities=24% Similarity=0.324 Sum_probs=182.0
Q ss_pred CCCC-CCCcCCChHHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCC-CCCCcccc---------ccCCCCcccc
Q psy8970 16 GKLG-LAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRG-PNGVWTLE---------KKGIKPKVNI 84 (258)
Q Consensus 16 ~~~~-~~e~~~~~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~-~~Glw~~~---------~~~~~p~~~~ 84 (258)
+.+| .+++++.+.+.++++++|+++|++|++|||+|||||||+|||||||+ .+|+|+.. .+..+|+.+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~~l~~~i~~a~~ivvlTGAGiSt~SGIPdFR~~~~Glw~~~~p~~~~~~~~f~~~p~~~w 95 (290)
T 3u31_A 16 GSMGNLMISFLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPRIYGTIWGFWKYPEKIW 95 (290)
T ss_dssp -----------CCCCEEECHHHHHHHHHTCSSEEEEECGGGTGGGTCCSCTTCTTSGGGGSCHHHHTBHHHHHHCHHHHH
T ss_pred ccccchhhhccCcchhHHHHHHHHHHHHhCCCEEEEeCCccccccCCccccccccchhhcCCHHHhhCHHhhhhCHHHHH
Confidence 3456 67777888888889999999999999999999999999999999999 69999742 2345777777
Q ss_pred cc-------cCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhc
Q psy8970 85 SF-------DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSV 157 (258)
Q Consensus 85 ~f-------~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~ 157 (258)
.| .+++||++|++|++|++.|++++||||||||||++||+ ++|+|||||++.++|..|++.|+.+......
T Consensus 96 ~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~~~~viTQNVDgLh~rAG~--~~vielHGs~~~~~C~~C~~~~~~~~~~~~~ 173 (290)
T 3u31_A 96 EVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDGLHEASGN--TKVISLHGNVFEAVCCTCNKIVKLNKIMLQK 173 (290)
T ss_dssp HHHHHHHHHSCCCCCHHHHHHHHHHHTTCEEEEEESCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEECCTGGGST
T ss_pred HHHHHHhhhccCCCCHHHHHHHHHHHcCCCceEEEechHHHHHHcCC--CcEEEecCCcCcceeCCCCCcCChhHhhhcc
Confidence 65 47999999999999999999999999999999999997 7999999999999999999988765543210
Q ss_pred cccCCCCCCCCCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEc
Q psy8970 158 GQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCF 221 (258)
Q Consensus 158 ~~~~~~~~C~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN 221 (258)
.. ....-..|.|+ |||.|||+||||||++|++.++.|.+++++|||+|||||||+|+ |+||
T Consensus 174 ~~--~~~~~~~P~C~-Cgg~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN 250 (290)
T 3u31_A 174 TS--HFMHQLPPECP-CGGIFKPNIILFGEVVSSDLLKEAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEIN 250 (290)
T ss_dssp TS--STTTSSSCBCT-TSCBEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred cc--cccccCCCCCC-CCCEECCeEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEEC
Confidence 00 00000124567 99999999999999999999999999999999999999999999 8999
Q ss_pred CCCCCCCC-cccEEEEeeccC
Q psy8970 222 FRKTKQNN-NTNLCGRVVKST 241 (258)
Q Consensus 222 ~~~t~~d~-~adl~i~~~~~~ 241 (258)
+++|+.|. .+|++|++.+++
T Consensus 251 ~~~t~~~~~~~d~~i~g~a~~ 271 (290)
T 3u31_A 251 ISKTYITNKMSDYHVCAKFSE 271 (290)
T ss_dssp SSCCTTTTTTCSEEEESCGGG
T ss_pred CCCCCCCCccceEEEECCHHH
Confidence 99999985 689999987765
No 4
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=100.00 E-value=8.3e-61 Score=423.40 Aligned_cols=200 Identities=31% Similarity=0.477 Sum_probs=168.4
Q ss_pred HHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccc--------cCCCCcccccc--------cCCCCCHHHHH
Q psy8970 34 IKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK--------KGIKPKVNISF--------DDAVPTVTHMA 97 (258)
Q Consensus 34 l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~--------~~~~p~~~~~f--------~~~~Pn~~H~~ 97 (258)
+++++++|++|++|||+|||||||+|||||||+++|+|+... +..+|+.+|.| .+++||++|++
T Consensus 3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~Pn~~H~~ 82 (246)
T 1yc5_A 3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVL 82 (246)
T ss_dssp CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC-----------CCTTBHHHHHHCHHHHHHHHHHHTGGGGGCCCCHHHHH
T ss_pred HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCcccccCCCceecHHHHhhCHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 578999999999999999999999999999999999998532 23456666654 47999999999
Q ss_pred HHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCe
Q psy8970 98 ILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177 (258)
Q Consensus 98 L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~ 177 (258)
|++|+++|++++||||||||||+|||+ ++|+|+||++.+++|+.|++.|+.+.....+.. ...|+|+ .|||.
T Consensus 83 La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~-----~Cgg~ 154 (246)
T 1yc5_A 83 LAKLEEKGLIEAVITQNIDRLHQRAGS--KKVIELHGNVEEYYCVRCEKKYTVEDVIKKLES-SDVPLCD-----DCNSL 154 (246)
T ss_dssp HHHHHHTTSCSEEEECCCSCHHHHTTC--SCEEETTEEEEEEEETTTCCEEEHHHHHHHTTT-CSSCBCT-----TTCCB
T ss_pred HHHHHhcCCCceEEeccccchHhHcCC--CcEEEecCccceeEcCCCCCCCcHHHHHHHhcc-CCCCCCC-----CCCCc
Confidence 999999999999999999999999998 789999999999999999998887665433321 1346676 99999
Q ss_pred ecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEeeccC
Q psy8970 178 LHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRVVKST 241 (258)
Q Consensus 178 lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~~~~~ 241 (258)
|||+||||||++|++.|+.|.+++++||++|||||||+|+ |+||+++|+.|..++++|++.+++
T Consensus 155 lrP~vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~ 234 (246)
T 1yc5_A 155 IRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVE 234 (246)
T ss_dssp EEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHH
T ss_pred cCcceEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHH
Confidence 9999999999999999999999999999999999999998 999999999999999999986654
No 5
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=100.00 E-value=5.9e-61 Score=431.51 Aligned_cols=208 Identities=28% Similarity=0.412 Sum_probs=179.0
Q ss_pred HHHHHHHHHHh--CCcEEEEeCCccCccCCCCCCCCCC-CCccccc---------------cCCCCcccccc------cC
Q psy8970 33 KIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF------DD 88 (258)
Q Consensus 33 ~l~~la~~i~~--a~~ivv~tGAGiS~~SGIPdFR~~~-Glw~~~~---------------~~~~p~~~~~f------~~ 88 (258)
.+++++++|++ |++|||+|||||||+||||||||++ |+|+... +..+|+.+|.| .+
T Consensus 10 ~l~~la~~i~~~~a~~IvvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~~~~~f~~~P~~f~~~~~~~~~~~ 89 (285)
T 3glr_A 10 SLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGN 89 (285)
T ss_dssp CHHHHHHHHHTTSCCCEEEEECGGGTGGGTCCCTTSSSSHHHHHHHTTCCSSGGGGGCHHHHHHCCHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHhcCCCeEEEEeCCccchhhCCCCcccCCCccccchhccCCCCHHHHhCHHHHhhCcHHHHHHHHHhhhcc
Confidence 48899999997 8999999999999999999999995 9997421 23456655654 37
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCC
Q psy8970 89 AVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY 168 (258)
Q Consensus 89 ~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~ 168 (258)
++||++|++|++|+++|++.+||||||||||++||+++++|+||||++.+.+|+.|++.|+.+.+...+.. ...|.|+
T Consensus 90 a~Pn~~H~~La~Le~~g~l~~viTQNIDgLh~rAG~~~~~VielHGs~~~~~C~~C~~~~~~~~~~~~i~~-~~~P~C~- 167 (285)
T 3glr_A 90 YKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMA-DRVPRCP- 167 (285)
T ss_dssp CCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEEEGGGGHHHHHT-TCCCBCT-
T ss_pred CCCCHHHHHHHHHHHcCCCceEEeeeecchHhhcCCCcccEEEecCCCCeEEECCCCCcCCHHHHHHHhhc-CCCCCCC-
Confidence 89999999999999999999999999999999999999999999999999999999999887654433221 2356676
Q ss_pred CCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE---------------EEEcCCCCC----CCC
Q psy8970 169 RGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF---------------LKCFFRKTK----QNN 229 (258)
Q Consensus 169 ~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~---------------v~iN~~~t~----~d~ 229 (258)
.|||.|||+||||||++|.+.+ .+.+++++|||+|||||||+|+ |+||++++. .+.
T Consensus 168 ----~Cgg~lrP~IV~FGE~lp~~~~-~~~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~ 242 (285)
T 3glr_A 168 ----VCTGVVKPDIVFFGEPLPQRFL-LHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPR 242 (285)
T ss_dssp ----TTCCBEEEEECCTTSBCCGGGG-GHHHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCC
T ss_pred ----CCCCccCCcEEEeCCcCCHHHH-HHHHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCC
Confidence 8999999999999999999877 4577889999999999999999 999999997 578
Q ss_pred cccEEEEeeccCcccccc
Q psy8970 230 NTNLCGRVVKSTDSTRRC 247 (258)
Q Consensus 230 ~adl~i~~~~~~~~~~~~ 247 (258)
.+|+.+.+.+++.+...|
T Consensus 243 ~~d~~~~g~~~~~~~~L~ 260 (285)
T 3glr_A 243 SRDVAQLGDVVHGVESLV 260 (285)
T ss_dssp TTEEEEESCHHHHHHHHH
T ss_pred CccEEEcCCHHHHHHHHH
Confidence 999999998877766555
No 6
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=100.00 E-value=2.1e-60 Score=422.40 Aligned_cols=204 Identities=27% Similarity=0.411 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCcccc---------ccCCCCccccccc-------CCCCCHH
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISFD-------DAVPTVT 94 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~---------~~~~~p~~~~~f~-------~~~Pn~~ 94 (258)
++++++++++|++|++|||+|||||||+||||||||++|+|+.. .+..+|+.+|.|. .++||++
T Consensus 2 ~~~i~~l~~~l~~a~~ivv~tGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~Pn~~ 81 (253)
T 1ma3_A 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPRAFWEFSMEMKDKLFAEPNPA 81 (253)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGSCC----------CCSCSSCHHHHTBHHHHTTCHHHHHHHHHHTHHHHTCCCCHH
T ss_pred hHHHHHHHHHHHhCCcEEEEEchhhhHhhCCCCcCCCCcccccCChhheecHHHHhcCHHHHHHHHHHHHHhccCCCCHH
Confidence 56799999999999999999999999999999999999999742 2456787777651 3999999
Q ss_pred HHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCC
Q psy8970 95 HMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPC 174 (258)
Q Consensus 95 H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~C 174 (258)
|++|++|+++|++.+||||||||||++||+ ++|+|+||++..++|+.|++.|+.+.....+.. ...|.|+ .|
T Consensus 82 H~~La~L~~~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~-~~~p~C~-----~C 153 (253)
T 1ma3_A 82 HYAIAELERMGIVKAVITQNIDMLHQRAGS--RRVLELHGSMDKLDCLDCHETYDWSEFVEDFNK-GEIPRCR-----KC 153 (253)
T ss_dssp HHHHHHHHHTTSEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEEGGGTHHHHHT-TCCCCCT-----TT
T ss_pred HHHHHHHHhcCCCeEEEeccccccHhHhCC--CCEEEeCCCcCeeeeCCCCCcCcHHHHHHHhcc-CCCCCCC-----CC
Confidence 999999999999999999999999999998 789999999999999999998877665433221 1245666 99
Q ss_pred CC-eecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEe
Q psy8970 175 RG-TLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRV 237 (258)
Q Consensus 175 gg-~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~ 237 (258)
|| .|||+||||||++|++.++.|.+++++||++|||||||+|+ |+||+++|+.|..++++|++
T Consensus 154 gg~~lrP~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~ 233 (253)
T 1ma3_A 154 GSYYVKPRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIG 233 (253)
T ss_dssp CCSCEEEEECCBTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEES
T ss_pred CCccccceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeC
Confidence 99 99999999999999999999999999999999999999998 99999999999999999998
Q ss_pred eccCc
Q psy8970 238 VKSTD 242 (258)
Q Consensus 238 ~~~~~ 242 (258)
.+++.
T Consensus 234 ~~~~~ 238 (253)
T 1ma3_A 234 KAGEV 238 (253)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 66543
No 7
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=100.00 E-value=1.7e-60 Score=427.13 Aligned_cols=204 Identities=25% Similarity=0.413 Sum_probs=173.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCcccc---------ccCCCCcccccc--------cCCCCCHHH
Q psy8970 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVTH 95 (258)
Q Consensus 33 ~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~---------~~~~~p~~~~~f--------~~~~Pn~~H 95 (258)
++++|+++|++|++|||+|||||||+|||||||+++|+|+.. .+..+|+.+|.| .+++||++|
T Consensus 10 ~i~~l~~~l~~a~~ivvlTGAGiSt~SGIPdFR~~~Glw~~~~~~~l~~~~~f~~~p~~~w~fy~~~~~~~~~~~Pn~~H 89 (273)
T 3riy_A 10 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRVWEFYHYRREVMGSKEPNAGH 89 (273)
T ss_dssp CHHHHHHHHHHCSEEEEEECGGGTGGGTCCCSSSGGGEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCcEEEEECcccchhhCCCccccccchhhhCChhhcCCHHHHhhCHHHHHHHHHHHHHHhhhCCCCHHH
Confidence 478899999999999999999999999999999999999753 234578777765 479999999
Q ss_pred HHHHHHHH----cCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhh--hhhcc-----------
Q psy8970 96 MAILELVN----RGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSA--TNSVG----------- 158 (258)
Q Consensus 96 ~~L~~L~~----~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~--~~~~~----------- 158 (258)
++|++|++ +|++++||||||||||+|||+ ++|+|||||+++++|+.|++.|..... ...+.
T Consensus 90 ~~La~Le~~~~~~g~~~~viTQNiDgLh~~AG~--~~vielHG~~~~~~C~~C~~~~~~~~~p~~~~~~~~~~~~~~~~~ 167 (273)
T 3riy_A 90 RAIAECETRLGKQGRRVVVITQNIDELHRKAGT--KNLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQD 167 (273)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESCCSCHHHHHTC--CSEEETTEEEEEEEETTTCCEEECCCSSSSGGGTTCCCCSTTCCC
T ss_pred HHHHHHHHhhhhcCceeEEEEecccchHhhcCC--CCEEEecCcCCeeEcCCCCCcccccccchhhhhhcccCCcccccc
Confidence 99999995 699999999999999999997 799999999999999999988754321 00000
Q ss_pred ---ccCCCCCCCCCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EE
Q psy8970 159 ---QKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LK 219 (258)
Q Consensus 159 ---~~~~~~~C~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~ 219 (258)
.....|+|+. +.|||.|||+||||||++|++.++.|.+++++|||+|||||||+|+ |+
T Consensus 168 ~~~~~~~~P~C~~---~~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~ 244 (273)
T 3riy_A 168 ASIPVEKLPRCEE---AGCGGLLRPHVVWFGENLDPAILEEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAE 244 (273)
T ss_dssp CCCCGGGSCBCCG---GGCCCBEEEEECCTTSBCCHHHHHHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEE
T ss_pred cccccCCCCCCCC---CCCCCeeCCcEEEeCCcCCHHHHHHHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEE
Confidence 0001234410 4899999999999999999999999999999999999999999999 99
Q ss_pred EcCCCCCCCCcccEEEEeeccC
Q psy8970 220 CFFRKTKQNNNTNLCGRVVKST 241 (258)
Q Consensus 220 iN~~~t~~d~~adl~i~~~~~~ 241 (258)
||+++|+.|..++++|++.+++
T Consensus 245 IN~~~t~~d~~~~~~i~g~~~~ 266 (273)
T 3riy_A 245 FNTETTPATNRFRFHFQGPCGT 266 (273)
T ss_dssp EESSCCTTGGGSSEEEESCHHH
T ss_pred ECCCCCCCCcceeEEEeCCHHH
Confidence 9999999999999999986543
No 8
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-60 Score=447.85 Aligned_cols=220 Identities=25% Similarity=0.288 Sum_probs=186.7
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccc---------------cCCCCcccccc------cCCCC
Q psy8970 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK---------------KGIKPKVNISF------DDAVP 91 (258)
Q Consensus 33 ~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~---------------~~~~p~~~~~f------~~~~P 91 (258)
.+++++++|++|++|||+|||||||+||||||||++|+|+..+ |..+|+.+|.| ..++|
T Consensus 173 ~i~~l~~~L~~ak~IVVLTGAGISTeSGIPDFRs~~GLw~~~~~~gl~~Pe~v~s~~~F~~dP~~Fy~~~r~~~~~~~~P 252 (492)
T 4iao_A 173 TIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIY 252 (492)
T ss_dssp SHHHHHHHHHHCSCEEEEECGGGGGGGTCCCSSSTTSHHHHHHTSCCSCGGGGGBHHHHHHCHHHHHHHGGGGCCCSSCC
T ss_pred HHHHHHHHHHhCCcEEEEeCcccccccCCccccCchHHHHhhhhcCCCCHHHhcCHHHHhhChHHHHHHHHHhhCCcCCC
Confidence 4788999999999999999999999999999999999997531 22345555543 25789
Q ss_pred CHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhcc--ccCCCCCCC--
Q psy8970 92 TVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVG--QKNLNISCP-- 167 (258)
Q Consensus 92 n~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~--~~~~~~~C~-- 167 (258)
|++|++|++|+++|++.+||||||||||++||+++++|+|||||+...+|..|++.++.+.+...+. ..|.++.|.
T Consensus 253 n~aH~aLa~Le~~G~l~~VITQNIDgLHqrAG~~s~~ViELHGsl~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp~Cg~~ 332 (492)
T 4iao_A 253 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPLCPYCYKK 332 (492)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTCCTTEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTHHH
T ss_pred CHHHHHHHHHHHCCCCceeEeccccchHhhcCCChhhEEeecCccceeecCCCCCcCCHHHHHHHHhccCCCCCcccccc
Confidence 9999999999999999999999999999999998899999999999999999999888765443221 112233341
Q ss_pred -------------------------CCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE-----
Q psy8970 168 -------------------------YRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----- 217 (258)
Q Consensus 168 -------------------------~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----- 217 (258)
.+.|..|||.|||+||||||++|.+.++.+.+++++||++|||||||+|+
T Consensus 333 ~~~~~~~~~~~~dg~~~~~~~~~~~~~~c~~cgG~LRPdIVfFGE~LP~~~~~~a~~~~~~aDLlLVIGTSL~VyPaA~L 412 (492)
T 4iao_A 333 RREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSEI 412 (492)
T ss_dssp HHHHSTTCCCCC--------CCTTCCTTCCTTTTBEEESSCCBTSBCCHHHHHHHHHHTTTCSEEEEESCCCCEETGGGH
T ss_pred cccccccccccccccccccccccccccccccCCCcCCCCEEECCCCCCHHHHHHHHHHHhhCCEEEEeccCCCccchhhH
Confidence 13467899999999999999999999999999999999999999999999
Q ss_pred ----------EEEcCCCCCCCCcccEEEEeeccCcccccc---ccccCc
Q psy8970 218 ----------LKCFFRKTKQNNNTNLCGRVVKSTDSTRRC---RVRIPA 253 (258)
Q Consensus 218 ----------v~iN~~~t~~d~~adl~i~~~~~~~~~~~~---~~~~~~ 253 (258)
|+||+++|..+ .+|++|.+.|++.+...| +|.+|.
T Consensus 413 v~~a~~~~p~ViIN~ept~~~-~~Dl~l~G~cdevv~~L~~~LGw~ip~ 460 (492)
T 4iao_A 413 VNMVPSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPH 460 (492)
T ss_dssp HHHSBTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHTTCCCCS
T ss_pred HHHHhcCCcEEEEcCCCCCCC-CccEEEeCCHHHHHHHHHHHhCCCCCh
Confidence 99999999864 589999999988776655 999984
No 9
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-59 Score=434.44 Aligned_cols=220 Identities=26% Similarity=0.334 Sum_probs=187.4
Q ss_pred HHHHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccc---------------cCCCCcccccc------cCCCC
Q psy8970 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEK---------------KGIKPKVNISF------DDAVP 91 (258)
Q Consensus 33 ~l~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~---------------~~~~p~~~~~f------~~~~P 91 (258)
++++|+++|++|++|||+|||||||+||||||||++|+|+..+ |..+|+.+|.| ..++|
T Consensus 35 ~i~~l~~~l~~a~~IvvlTGAGISt~SGIPdFR~~~Glw~~~~~~~l~~p~~~~~~~~F~~~P~~f~~~~~~~~~~~~~P 114 (354)
T 2hjh_A 35 TIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVFNYNIFMHDPSVFYNIANMVLPPEKIY 114 (354)
T ss_dssp SHHHHHHHHHHCSSEEEEECGGGGGGGTCCCSSSTTSHHHHTGGGCCSSGGGGGBHHHHHHCTHHHHHHGGGGCCCCSCC
T ss_pred HHHHHHHHHHhCCcEEEEECchhhHhhCCCcccCcchHHHHHHhhcCCCHHHhCCHHHHhcCHHHHHHHHHHHccccCCC
Confidence 4789999999999999999999999999999999999997521 12355555554 25789
Q ss_pred CHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCC---
Q psy8970 92 TVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY--- 168 (258)
Q Consensus 92 n~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~--- 168 (258)
|++|++|++|+++|++.+||||||||||++||+++++|+|||||++.++|+.|+..++.+.....+.. ...|.|+.
T Consensus 115 n~~H~aLa~Le~~g~l~~viTQNVDgLh~rAG~~~~~vielHGsl~~~~C~~C~~~~~~~~~~~~~~~-~~~P~Cp~C~~ 193 (354)
T 2hjh_A 115 SPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGISTDKLVQCHGSFATATCVTCHWNLPGERIFNKIRN-LELPLCPYCYK 193 (354)
T ss_dssp CHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCTTTEEETTEEEEEEEETTTCCEEEGGGGHHHHHT-TCCCBCTTTHH
T ss_pred CHHHHHHHHHHHcCCceEEEecccCcHHHHcCCCccCEEEecCCcCccccCCCCCcCCHHHHHHHhhc-cCCCcCccccc
Confidence 99999999999999999999999999999999988999999999999999999998877665443321 12345542
Q ss_pred ---------------------------CCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----
Q psy8970 169 ---------------------------RGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF---- 217 (258)
Q Consensus 169 ---------------------------~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~---- 217 (258)
+.|..|||.|||+||||||++|++.++.+.+++++||++|||||||+|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~lrPdVV~FGE~lp~~~~~~a~~~~~~aDllLviGTSL~V~Paa~ 273 (354)
T 2hjh_A 194 KRREYFPEGYNNKVGVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIGTSLKVAPVSE 273 (354)
T ss_dssp HHHHHCCC-----------------CCTTSCTTTTBEEEEECCBTSBCCHHHHHHHHHHTTTCCEEEEESCCCCEETGGG
T ss_pred cccccccccccccccccccccccccccccccccCCeeCCChhhccccCCHHHHHHHHHHHhhCCEEEEECcCCCchhHHH
Confidence 2356789999999999999999999999999999999999999999999
Q ss_pred -----------EEEcCCCCCCCCcccEEEEeeccCcccc---ccccccCcc
Q psy8970 218 -----------LKCFFRKTKQNNNTNLCGRVVKSTDSTR---RCRVRIPAR 254 (258)
Q Consensus 218 -----------v~iN~~~t~~d~~adl~i~~~~~~~~~~---~~~~~~~~~ 254 (258)
|+||+++|..+ .+|++|++.+++.... .++|++|.|
T Consensus 274 lv~~~~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~~ 323 (354)
T 2hjh_A 274 IVNMVPSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHK 323 (354)
T ss_dssp HHHHSCTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCST
T ss_pred HHHHHhcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCchH
Confidence 99999999875 5999999988776554 458999875
No 10
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=100.00 E-value=8.5e-59 Score=419.35 Aligned_cols=210 Identities=20% Similarity=0.357 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEeCCccCccCCCCCCCCCC-CCccccc---------------cCCCCcccccc----
Q psy8970 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPKVNISF---- 86 (258)
Q Consensus 29 ~~~~~l~~la~~i~~--a~~ivv~tGAGiS~~SGIPdFR~~~-Glw~~~~---------------~~~~p~~~~~f---- 86 (258)
.+++++++|+++|++ |++|||+|||||||+||||||||++ |+|+... +..+|+.+|.|
T Consensus 3 ~~~~~i~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~~e~~~~~~~f~~~p~~f~~~~~~~ 82 (289)
T 1q1a_A 3 STEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPLPFYTLAKEL 82 (289)
T ss_dssp CTHHHHHHHHHHHHHSTTSCEEEEECGGGGGGGTCCCSSSTTTSGGGSCGGGCCSSGGGGGBHHHHHHCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCCEEEEECCceeHhhCCCCcCCCCCcccccccccCCCCHHHhcCHHHHhcCHHHHHHHHHHH
Confidence 356789999999999 9999999999999999999999995 9997522 22455555654
Q ss_pred --cCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhcccc--CC
Q psy8970 87 --DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQK--NL 162 (258)
Q Consensus 87 --~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~--~~ 162 (258)
.+++||++|++|++|++.|++.+||||||||||++||+++++|+||||++..++|+.|++.|+.+.....+... ..
T Consensus 83 ~~~~a~Pn~~H~~La~L~~~g~~~~viTQNVDgLh~~AG~~~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 162 (289)
T 1q1a_A 83 YPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKD 162 (289)
T ss_dssp CSSSCCCCHHHHHHHHHHHTTCEEEEEECCSSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECHHHHHHHHTCSSCCS
T ss_pred hhCcCCCCHHHHHHHHHHhCCCccEEEecCccchHHHcCCCcccEEEecCCcCceEECCCCCCCcHHHHHHHHhhccCCC
Confidence 37999999999999999999999999999999999999889999999999999999999988877655444221 12
Q ss_pred CCCCCCCCCCCCCCeecceEEEcCCCCChHHHHHH-------------HHHhccCCEEEEEecCceeE------------
Q psy8970 163 NISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMG-------------DYNSSIADLSICLGKCLLSF------------ 217 (258)
Q Consensus 163 ~~~C~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a-------------~~~~~~~Dl~lvvGTSl~V~------------ 217 (258)
.|.|+ .|||.|||+||||||++|++.++.+ .+.+++||++|||||||+|+
T Consensus 163 ~P~C~-----~Cgg~lrP~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl~V~Pa~~l~~~~~~~ 237 (289)
T 1q1a_A 163 FVKCD-----VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFASLPEEIPRK 237 (289)
T ss_dssp CCBCT-----TTCCBEEEEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCCEETTTHHHHHSCTT
T ss_pred CccCC-----CCCCEECCCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCCChhhHHHHHHHHhcC
Confidence 45666 9999999999999999999765443 24578999999999999999
Q ss_pred ---EEEcCCCCC----CCCcccEEEEeeccCcc
Q psy8970 218 ---LKCFFRKTK----QNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 218 ---v~iN~~~t~----~d~~adl~i~~~~~~~~ 243 (258)
|+||++++. .+..+|++|++.+++..
T Consensus 238 ~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l 270 (289)
T 1q1a_A 238 VKRVLCNLETVGDFKANKRPTDLIVHQYSDEFA 270 (289)
T ss_dssp SEEEEESSSCCTHHHHSCCTTCEEECCCHHHHH
T ss_pred CCEEEEECCCcccCCCCCcceeEEEeCCHHHHH
Confidence 999999997 35579999998765543
No 11
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=100.00 E-value=1.9e-59 Score=415.36 Aligned_cols=197 Identities=26% Similarity=0.377 Sum_probs=174.9
Q ss_pred HHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCcccc---------ccCCCCcccccc--------cCCCCCHHHHH
Q psy8970 35 KVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF--------DDAVPTVTHMA 97 (258)
Q Consensus 35 ~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~---------~~~~~p~~~~~f--------~~~~Pn~~H~~ 97 (258)
++++++|++|++|||+|||||||+||||||||++|+|+.. .+..+|+.+|.| .+++||++|++
T Consensus 3 ~~l~~~i~~a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~w~~~~~~~~~~~~~~Pn~~H~~ 82 (249)
T 1m2k_A 3 EKLLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWYAWRMEKVFNAQPNKAHQA 82 (249)
T ss_dssp HHHHHHHHTCSSEEEEECGGGGGGGTCCCSSSTTCHHHHSCHHHHSSHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHhCCCEEEEECchhhhhhCCCCccCCCcCccCCCHHhcccHHHHhcCHHHHHHHHHHHHHHhCcCCCCHHHHH
Confidence 5789999999999999999999999999999999999742 234577777765 37999999999
Q ss_pred HHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCe
Q psy8970 98 ILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177 (258)
Q Consensus 98 L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~ 177 (258)
|++|+++|++.+||||||||||++||. ++|+|+||++.+++|+.|++.|+.+.. +.. ...|.|+ .|||.
T Consensus 83 La~L~~~g~~~~viTQNiDgLh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~---~~~-~~~p~C~-----~Cgg~ 151 (249)
T 1m2k_A 83 FAELERLGVLKCLITQNVDDLHERAGS--RNVIHLHGSLRVVRCTSCNNSFEVESA---PKI-PPLPKCD-----KCGSL 151 (249)
T ss_dssp HHHHHHTTCEEEEEECCCSCHHHHTTC--CSEEETTEEEEEEEESSSSCEEECSSC---CCS-SSCCBCS-----SSSSB
T ss_pred HHHHHhCCCCcEEEECCccchhhhcCC--CcEEEecCCcceeEeCCCCCcccchhh---ccC-CCCCCCC-----CCCCC
Confidence 999999999999999999999999996 799999999999999999998776543 111 1245666 99999
Q ss_pred ecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEeeccC
Q psy8970 178 LHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRVVKST 241 (258)
Q Consensus 178 lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~~~~~ 241 (258)
|||+||||||++|++.|+.+.+++++||++|||||||+|+ |+||+++|+.|..++++|++.+++
T Consensus 152 lrP~Vv~FgE~lp~~~~~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~ 231 (249)
T 1m2k_A 152 LRPGVVWAGEMLPPDVLDRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGE 231 (249)
T ss_dssp EEEEECCTTSCCCHHHHHHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHH
T ss_pred cCCeEEecCCCCCHHHHHHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHH
Confidence 9999999999999999999999999999999999999998 999999999999999999986654
Q ss_pred c
Q psy8970 242 D 242 (258)
Q Consensus 242 ~ 242 (258)
.
T Consensus 232 ~ 232 (249)
T 1m2k_A 232 V 232 (249)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=100.00 E-value=1.4e-58 Score=428.46 Aligned_cols=219 Identities=21% Similarity=0.340 Sum_probs=170.8
Q ss_pred CCCcCCChHHHHHHHHHHHHHHHh--CCcEEEEeCCccCccCCCCCCCCCC-CCccccc---------------cCCCCc
Q psy8970 20 LAETFDSKEDFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEK---------------KGIKPK 81 (258)
Q Consensus 20 ~~e~~~~~~~~~~~l~~la~~i~~--a~~ivv~tGAGiS~~SGIPdFR~~~-Glw~~~~---------------~~~~p~ 81 (258)
-++-..++.++++++++|+++|++ |++|||+|||||||+||||||||++ |+|+... |..+|+
T Consensus 2 ~~~~~~~~~~~~~~i~~l~~~i~~~~a~~IVvlTGAGISteSGIPdFR~~~~Glw~~~~~~~l~~pe~~~s~~~f~~~P~ 81 (361)
T 1q14_A 2 MASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFDVDFFQSDPL 81 (361)
T ss_dssp TTSCCCSSCCHHHHHHHHHHHHHTSTTCCEEEEECGGGTGGGC--------------CCCCCCSSGGGGGBHHHHHHCCH
T ss_pred CCccCCCchhHHHHHHHHHHHHHhccCCcEEEEeCcccchhcCCcccccCcchhhhcccccCCCCHHHhcCHHHHhcCHH
Confidence 344455667888899999999999 9999999999999999999999995 9997522 223555
Q ss_pred ccccc------cCCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhh
Q psy8970 82 VNISF------DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATN 155 (258)
Q Consensus 82 ~~~~f------~~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~ 155 (258)
.+|.| ..++||++|++|++|++.|++++||||||||||++||+++++|+||||++..++|+.|++.|+.+....
T Consensus 82 ~f~~~~~~~~~~~a~Pn~~H~aLa~Le~~g~~~~ViTQNVDgLh~rAG~~~~~VielHGsl~~~~C~~C~~~~~~~~~~~ 161 (361)
T 1q14_A 82 PFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKS 161 (361)
T ss_dssp HHHHHHTTTSCCCCCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEETTTCCEECTHHHHH
T ss_pred HHHHHHHHHhhCcCCCCHHHHHHHHHHhcCCCcEEEecccchhHhHcCCCcceEEeccccccccCcCCCCccCcHHHHHH
Confidence 55654 379999999999999999999999999999999999998899999999999999999999888766554
Q ss_pred hccccC--CCCCCCCCCCCCCCCeecceEEEcCCCCChHHHHHHHH-------------HhccCCEEEEEecCceeE---
Q psy8970 156 SVGQKN--LNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDY-------------NSSIADLSICLGKCLLSF--- 217 (258)
Q Consensus 156 ~~~~~~--~~~~C~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~-------------~~~~~Dl~lvvGTSl~V~--- 217 (258)
.+...+ ..|.|+ .|||.|||+||||||++|+..++.+.+ .+++||++|||||||+|+
T Consensus 162 ~~~~~~~~~~P~Cp-----~Cgg~lrP~VV~FGE~lp~~~~~~~~~a~~~l~~~i~~~~~~~~aDllLviGTSl~V~Paa 236 (361)
T 1q14_A 162 KLAEHPIKDFVKCD-----VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFA 236 (361)
T ss_dssp HTTSSSCSCCCBCT-----TTCCBEEEEECCBTSCCCHHHHHHHHHHHHHHHHC--------CCCEEEEESCCCCSTTGG
T ss_pred HHhhcccCCCCCCc-----CCCCEeCCCcccccccCCHHHHHHHHHHHHhhhhcchhhhhhccCCEEEEECCCCCchhHH
Confidence 443211 135666 999999999999999999988776655 567999999999999999
Q ss_pred ------------EEEcCCCCC----CCCcccEEEEeeccCcc
Q psy8970 218 ------------LKCFFRKTK----QNNNTNLCGRVVKSTDS 243 (258)
Q Consensus 218 ------------v~iN~~~t~----~d~~adl~i~~~~~~~~ 243 (258)
|+||++++. .+..+|++|++.+++..
T Consensus 237 ~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl 278 (361)
T 1q14_A 237 SLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFA 278 (361)
T ss_dssp GHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHH
T ss_pred HHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHH
Confidence 999999996 35679999998776544
No 13
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=100.00 E-value=2.7e-57 Score=414.86 Aligned_cols=208 Identities=24% Similarity=0.379 Sum_probs=179.1
Q ss_pred HHHHHHHHHHh--CCcEEEEeCCccCccCCCCCCCCC-CCCccccc---------------cCCCCcccccc------cC
Q psy8970 33 KIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEK---------------KGIKPKVNISF------DD 88 (258)
Q Consensus 33 ~l~~la~~i~~--a~~ivv~tGAGiS~~SGIPdFR~~-~Glw~~~~---------------~~~~p~~~~~f------~~ 88 (258)
.+++|+++|++ |++|||+|||||||+||||||||+ +|+|+..+ +..+|+.+|.| .+
T Consensus 30 ~l~~l~~~i~~~~a~~ivvltGAGiSt~SGIPdfR~~~~Glw~~~~~~~l~~p~~~~~~~~f~~~p~~f~~~~r~~~~~~ 109 (323)
T 1j8f_A 30 TLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFEISYFKKHPEPFFALAKELYPGQ 109 (323)
T ss_dssp SHHHHHHHHHSTTCCCEEEEECGGGTGGGTCCCTTCSCSTTSTTTTTTCCSSGGGGGBHHHHHHCCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhHhhCCCcccCCCccHHHHhhhcCCCCHHHHcCHHHHhcCHHHHHHHHHHHhhCc
Confidence 47899999997 899999999999999999999999 59998532 12345555654 47
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCC--cccccchhhhhhhccccCCCCCC
Q psy8970 89 AVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK--CERQFVRKSATNSVGQKNLNISC 166 (258)
Q Consensus 89 ~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~--C~~~~~~~~~~~~~~~~~~~~~C 166 (258)
++||++|++|++|+++|++++||||||||||++||+++++|+|+||++..++|+. |++.|+.+.....+.. ...|+|
T Consensus 110 a~Pn~~H~aLa~L~~~g~~~~viTQNIDgLh~~AG~~~~~VielHGs~~~~~C~~~~C~~~~~~~~~~~~i~~-~~~P~C 188 (323)
T 1j8f_A 110 FKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQEDLVEAHGTFYTSHCVSASCRHEYPLSWMKEKIFS-EVTPKC 188 (323)
T ss_dssp CCCCHHHHHHHHHHHTTCEEEEEECCCSCHHHHTTCCGGGEEETTEEEEEEEESCTTTCCEECHHHHHHHHHT-TCCCBC
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEeecccchHHHcCCCcccEEEeeCCcceeecCCCccCccccHHHHHHhhcc-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999 9998877654433221 235667
Q ss_pred CCCCCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEecCceeE---------------EEEcCCCCCCCC--
Q psy8970 167 PYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF---------------LKCFFRKTKQNN-- 229 (258)
Q Consensus 167 ~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~---------------v~iN~~~t~~d~-- 229 (258)
+ .|||.|||+||||||++|++.++.+.+++++||++|||||||+|+ |+||+++|..+.
T Consensus 189 ~-----~Cgg~lrP~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~ 263 (323)
T 1j8f_A 189 E-----DCQSLVKPDIVFFGESLPARFFSCMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPF 263 (323)
T ss_dssp T-----TTCCBEEEEECCBTSCCCHHHHHHHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHH
T ss_pred c-----CCCCccCCCEEecCCcCCHHHHHHHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCccc
Confidence 6 999999999999999999999999999999999999999999999 889999998765
Q ss_pred ------------------cccEEEEeeccCccccc
Q psy8970 230 ------------------NTNLCGRVVKSTDSTRR 246 (258)
Q Consensus 230 ------------------~adl~i~~~~~~~~~~~ 246 (258)
.+|++|.+.+++.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~d~~i~gd~~~~l~~L 298 (323)
T 1j8f_A 264 LGMIMGLGGGMDFDSKKAYRDVAWLGECDQGCLAL 298 (323)
T ss_dssp HHHHHHHHTCCCSSSTTCCSEEEEESCHHHHHHHH
T ss_pred ccccccccccccccccccceeEEEeCCHHHHHHHH
Confidence 37899998877654443
No 14
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=100.00 E-value=1.8e-56 Score=393.16 Aligned_cols=186 Identities=22% Similarity=0.331 Sum_probs=152.8
Q ss_pred CCcEEEEeCCccCccCCCCCCCCCCCCcccc---------ccCCCCcccccc----------cCCCCCHHHHHHHHHHH-
Q psy8970 44 AKHVVLHTGAGISTSAGIPDFRGPNGVWTLE---------KKGIKPKVNISF----------DDAVPTVTHMAILELVN- 103 (258)
Q Consensus 44 a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~---------~~~~~p~~~~~f----------~~~~Pn~~H~~L~~L~~- 103 (258)
|++|||+|||||||+|||||||+++|+|+.. .+..+|+.+|.| .+++||++|++|++|++
T Consensus 1 a~~ivvltGAGiS~~SGIPdfR~~~Glw~~~~~~~~~~~~~f~~~p~~~~~f~~~~~~~~~~~~a~Pn~~H~~La~L~~~ 80 (235)
T 1s5p_A 1 KPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDA 80 (235)
T ss_dssp CCCEEEEECTHHHHTTTCCCCCSSSCEETTEEHHHHSSHHHHHHCHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEechhhhhhhCCCCCCCCCCCccCCCHhHcccHHHHhhCHHHHHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999999999742 234577776665 24999999999999999
Q ss_pred cCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeecceEE
Q psy8970 104 RGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTIL 183 (258)
Q Consensus 104 ~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lrP~Vv 183 (258)
.|++.+||||||||||++||. ++|+||||++..++|+.|++.|+.+... .. ...++ |+.|||.|||+||
T Consensus 81 ~g~~~~viTQNvD~Lh~~AG~--~~v~elHG~~~~~~C~~C~~~~~~~~~~---~~-~~~p~-----c~~Cgg~lrP~vv 149 (235)
T 1s5p_A 81 LGDRFLLVTQNIDNLHERAGN--TNVIHMHGELLKVRCSQSGQVLDWTGDV---TP-EDKCH-----CCQFPAPLRPHVV 149 (235)
T ss_dssp HGGGEEEEESCCSSHHHHHTC--CSCEETTEEEEEEEETTTCCEEECCSCC---CS-SCCC------------CEEEEEC
T ss_pred hCCceEEEeccccchhhhcCC--CcEEEecCCceEEEeCCCCCcccchhhc---cC-CCCCC-----CCCCCCeecCcEE
Confidence 699999999999999999994 7999999999999999999887765421 11 11233 4489999999999
Q ss_pred EcCCCCChHHHHHHHHHhccCCEEEEEecCceeE----------------EEEcCCCCCCCCcccEEEEeeccCc
Q psy8970 184 DWEHNLPQKDINMGDYNSSIADLSICLGKCLLSF----------------LKCFFRKTKQNNNTNLCGRVVKSTD 242 (258)
Q Consensus 184 ~fgE~~~~~~~~~a~~~~~~~Dl~lvvGTSl~V~----------------v~iN~~~t~~d~~adl~i~~~~~~~ 242 (258)
||||+ |+ .++++.+++++||++|||||||+|+ |+||+++|+.|..++++|++.+++.
T Consensus 150 ~FGE~-p~-~~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~ 222 (235)
T 1s5p_A 150 WFGEM-PL-GMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQV 222 (235)
T ss_dssp CTTSC-CS-SHHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHH
T ss_pred EeCCC-HH-HHHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHH
Confidence 99999 74 6899999999999999999999998 9999999999999999999876543
No 15
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=71.94 E-value=3.3 Score=29.73 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=38.0
Q ss_pred eecccCCcccccchhhhhhhccccCC------------------CCCCCCCCCCCCCCeecceEEEcCCCCChHHHHHHH
Q psy8970 137 YVDQCNKCERQFVRKSATNSVGQKNL------------------NISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGD 198 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~~~~~~~~~~~~------------------~~~C~~~~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~ 198 (258)
+...|+-||...++.+++.++-...+ ..+|| .||.- |||..+|.+.-+..+
T Consensus 7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP-----~CgEE------FyG~~Lp~~EaeKVF 75 (95)
T 2k5c_A 7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCP-----VCGEE------FYGKTLPRREAEKVF 75 (95)
T ss_dssp -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECT-----TTCCE------EETTSSCTTTHHHHH
T ss_pred ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCC-----CccHH------HhcccCChHHHHHHH
Confidence 34689999999999888766532111 12355 99863 789999988777776
Q ss_pred HHhc
Q psy8970 199 YNSS 202 (258)
Q Consensus 199 ~~~~ 202 (258)
+.++
T Consensus 76 ELLN 79 (95)
T 2k5c_A 76 ELLN 79 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 16
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=70.87 E-value=3.1 Score=33.31 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCcEEEEeCCccC
Q psy8970 34 IKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 34 l~~la~~i~~a~~ivv~tGAGiS 56 (258)
+++++++|++|++.||+.|.|+.
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~ 46 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLAL 46 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTC
T ss_pred HHHHHHHHHcCCCCEEEECCCcc
Confidence 78899999999999999999865
No 17
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=67.40 E-value=4 Score=25.99 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=20.7
Q ss_pred eeecccCCcccccchhhhh-hhccccCCCCCCCCCCCCCCCC
Q psy8970 136 MYVDQCNKCERQFVRKSAT-NSVGQKNLNISCPYRGFRPCRG 176 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~~~~-~~~~~~~~~~~C~~~~c~~Cgg 176 (258)
+...+|..||..|+.+.-. ......+..-.|| .||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP-----~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCP-----VCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCT-----TTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCc-----CCCC
Confidence 4567999999888743211 1111223344677 8884
No 18
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=60.43 E-value=3 Score=33.22 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=19.0
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCeec
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLH 179 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~lr 179 (258)
..+|..|++.|.... ....|| .||+.++
T Consensus 132 ~y~C~~Cg~~~~~~~---------~~~~Cp-----~CG~~~~ 159 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLP---------PGGVCP-----DCGSKVK 159 (165)
T ss_dssp CEEESSSCCEESSCC---------GGGBCT-----TTCCBEE
T ss_pred EEECCCCCCcccCCC---------CCCcCC-----CCCCcce
Confidence 578999999876321 123577 8998763
No 19
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=58.45 E-value=3 Score=31.00 Aligned_cols=14 Identities=57% Similarity=0.842 Sum_probs=12.4
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
++|++.+|||+|++
T Consensus 4 kkIll~Cg~G~sTS 17 (106)
T 1e2b_A 4 KHIYLFSSAGMSTS 17 (106)
T ss_dssp EEEEEECSSSTTTH
T ss_pred cEEEEECCCchhHH
Confidence 57999999999976
No 20
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=50.87 E-value=10 Score=24.92 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.0
Q ss_pred eecccCCcccccchh
Q psy8970 137 YVDQCNKCERQFVRK 151 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~ 151 (258)
...+|..|+..|+.+
T Consensus 2 ~~y~C~~CGyvYd~~ 16 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEA 16 (55)
T ss_dssp CEEEETTTCCEEETT
T ss_pred CcEEeCCCCeEECCC
Confidence 468999999888754
No 21
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=50.39 E-value=11 Score=24.49 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=11.9
Q ss_pred eecccCCcccccchh
Q psy8970 137 YVDQCNKCERQFVRK 151 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~ 151 (258)
...+|..|+..|+.+
T Consensus 2 ~~y~C~~CGyvYd~~ 16 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPA 16 (52)
T ss_dssp CCEECSSSCCCCCTT
T ss_pred CcEEeCCCCeEEcCC
Confidence 467999999888743
No 22
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=47.29 E-value=13 Score=37.15 Aligned_cols=39 Identities=5% Similarity=-0.021 Sum_probs=26.2
Q ss_pred CCCCCCCeecceEEEc---CCCCChHHHHHHHHHhccCCEEEEEec
Q psy8970 170 GFRPCRGTLHDTILDW---EHNLPQKDINMGDYNSSIADLSICLGK 212 (258)
Q Consensus 170 ~c~~Cgg~lrP~Vv~f---gE~~~~~~~~~a~~~~~~~Dl~lvvGT 212 (258)
.|+.||- .+.++ |+.+..+.++.|.+.+++-.++.+=|-
T Consensus 180 aC~~CGP----~l~l~~~~~~~~~~~~i~~a~~~l~~G~iva~kg~ 221 (772)
T 4g9i_A 180 ACPVCGP----SYRLYTSDGQEIYGDPLRKAAELIDKGYIVAIKGI 221 (772)
T ss_dssp CCTTTSC----CEEEESSSCBCCTTHHHHHHHHHHTTSCCEEECCS
T ss_pred CCccCCc----eEEEEcCCCCeechHHHHHHHHHHHcCCEEEEecC
Confidence 4889983 34443 445666778888888887777666553
No 23
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=47.11 E-value=12 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.464 Sum_probs=17.0
Q ss_pred ecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCC
Q psy8970 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRG 176 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg 176 (258)
...|..|+..+.... .+..+|+ .||.
T Consensus 28 ~Y~C~~CG~~~e~~~--------~d~irCp-----~CG~ 53 (70)
T 1twf_L 28 KYICAECSSKLSLSR--------TDAVRCK-----DCGH 53 (70)
T ss_dssp CEECSSSCCEECCCT--------TSTTCCS-----SSCC
T ss_pred EEECCCCCCcceeCC--------CCCccCC-----CCCc
Confidence 358999998765431 1234576 8997
No 24
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=45.33 E-value=9 Score=28.88 Aligned_cols=28 Identities=21% Similarity=0.604 Sum_probs=19.1
Q ss_pred eeecccCCcccccchhhhhhhccccCCCC-CCCCCCCCCCCCe
Q psy8970 136 MYVDQCNKCERQFVRKSATNSVGQKNLNI-SCPYRGFRPCRGT 177 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~~~~~~~~~~~~~~-~C~~~~c~~Cgg~ 177 (258)
-..++|..|++.+..+. ... .|| .||+.
T Consensus 71 p~~~~C~~CG~~~e~~~---------~~~~~CP-----~Cgs~ 99 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNA---------LDYGVCE-----KCHSK 99 (119)
T ss_dssp CCEEECSSSSCEECSCC---------STTCCCS-----SSSSC
T ss_pred cceEEcCCCCCEEeCCC---------CCCCcCc-----cccCC
Confidence 34689999998876421 134 576 89976
No 25
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=45.10 E-value=12 Score=30.00 Aligned_cols=90 Identities=14% Similarity=0.062 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC-----------CCCCCCCC-CCccccccCCCC-ccccccc-CCCCCHHHHH
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG-----------IPDFRGPN-GVWTLEKKGIKP-KVNISFD-DAVPTVTHMA 97 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG-----------IPdFR~~~-Glw~~~~~~~~p-~~~~~f~-~~~Pn~~H~~ 97 (258)
+.+++++++|.++++-|++.|.|-|...+ +|.+--.+ ..+.......++ .....+. .-+....-.+
T Consensus 32 ~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~ 111 (201)
T 3fxa_A 32 EALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNL 111 (201)
T ss_dssp HHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTT
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHH
Confidence 57899999999996455888999886543 33222111 000000000111 1111222 1222333445
Q ss_pred HHHHHHcCCCcEEEeccCcchHhh
Q psy8970 98 ILELVNRGKVHYVVSQNIDGLHLR 121 (258)
Q Consensus 98 L~~L~~~g~~~~viTQNIDgLh~k 121 (258)
+..+.++|-..-.||.|-+.-..+
T Consensus 112 ~~~ak~~g~~vi~IT~~~~s~l~~ 135 (201)
T 3fxa_A 112 IPACKTKGSTLIGVTENPDSVIAK 135 (201)
T ss_dssp HHHHHHHTCEEEEEESCTTSHHHH
T ss_pred HHHHHHcCCeEEEEECCCCChhHH
Confidence 666666787778899998874433
No 26
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=45.02 E-value=17 Score=34.36 Aligned_cols=26 Identities=15% Similarity=0.482 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|.+
T Consensus 188 ~~~i~~~~~~l~~A~rpvIl~G~g~~ 213 (549)
T 3eya_A 188 EEELRKLAQLLRYSSNIALMCGSGCA 213 (549)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGT
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCch
Confidence 45788999999999999999999975
No 27
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=44.99 E-value=8.9 Score=29.94 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=15.0
Q ss_pred ccccceeecccCCcccccchhh
Q psy8970 131 ELHGNMYVDQCNKCERQFVRKS 152 (258)
Q Consensus 131 elHGsl~~~~C~~C~~~~~~~~ 152 (258)
++.-.-..++|.+||+.+....
T Consensus 63 ~i~~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 63 EFVEEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp EEEEECCEEEETTTCCEEEGGG
T ss_pred EEEecCCcEECCCCCCEEeccc
Confidence 3333344689999999877654
No 28
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=44.96 E-value=6.1 Score=29.50 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=12.7
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
++|++.+|+|+|++
T Consensus 22 kkIlvvC~sG~gTS 35 (113)
T 1tvm_A 22 RKIIVACGGAVATS 35 (113)
T ss_dssp EEEEEESCSCSSHH
T ss_pred cEEEEECCCCHHHH
Confidence 57999999999987
No 29
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=44.63 E-value=16 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
+.+++.++++++.|.++++| ++.|.|-|...
T Consensus 25 ~~i~~~~~~~~~~i~~a~~I-~i~G~G~S~~~ 55 (196)
T 2yva_A 25 DAISRAAMTLVQSLLNGNKI-LCCGNGTSAAN 55 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCCE-EEEESTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEE-EEEeCchhhHH
Confidence 45668899999999999876 56788887643
No 30
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=43.97 E-value=10 Score=24.17 Aligned_cols=16 Identities=31% Similarity=0.709 Sum_probs=11.6
Q ss_pred ecccCCcccccchhhh
Q psy8970 138 VDQCNKCERQFVRKSA 153 (258)
Q Consensus 138 ~~~C~~C~~~~~~~~~ 153 (258)
...|..|+++++.+++
T Consensus 3 iY~C~rCg~~fs~~el 18 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQL 18 (48)
T ss_dssp --CCCCTTTTCCCCCS
T ss_pred EEEeeccCCCccHHHH
Confidence 4579999999887654
No 31
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=43.55 E-value=15 Score=26.24 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=13.2
Q ss_pred eeecccCCcccccchh
Q psy8970 136 MYVDQCNKCERQFVRK 151 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~ 151 (258)
+..++|..|+..|+.+
T Consensus 25 m~~y~C~vCGyvYD~~ 40 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEA 40 (81)
T ss_dssp CCEEEETTTCCEEETT
T ss_pred cceEEeCCCCEEEcCC
Confidence 5689999999988754
No 32
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=43.42 E-value=27 Score=22.83 Aligned_cols=15 Identities=13% Similarity=0.295 Sum_probs=11.9
Q ss_pred eecccCCcccccchh
Q psy8970 137 YVDQCNKCERQFVRK 151 (258)
Q Consensus 137 ~~~~C~~C~~~~~~~ 151 (258)
.+.+|..|+..|+.+
T Consensus 2 ~~y~C~vCGyvYd~~ 16 (54)
T 4rxn_A 2 KKYTCTVCGYIYDPE 16 (54)
T ss_dssp CCEEETTTCCEECTT
T ss_pred CceECCCCCeEECCC
Confidence 467999999888754
No 33
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=41.78 E-value=25 Score=33.23 Aligned_cols=31 Identities=10% Similarity=0.256 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
+....+.+++++++|++|++.||+.|.|...
T Consensus 192 ~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~ 222 (566)
T 2vbi_A 192 HTSLKAAVDATVALLEKSASPVMLLGSKLRA 222 (566)
T ss_dssp HHHHHHHHHHHHHHHHTCSCEEEEECTTTTT
T ss_pred cchHHHHHHHHHHHHHhCCCCEEEECcCccc
Confidence 3445677999999999999999999999853
No 34
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.93 E-value=16 Score=25.26 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=13.3
Q ss_pred ceeecccCCcccccchh
Q psy8970 135 NMYVDQCNKCERQFVRK 151 (258)
Q Consensus 135 sl~~~~C~~C~~~~~~~ 151 (258)
.+...+|..|+..|+.+
T Consensus 4 ~m~~y~C~vCGyiYd~~ 20 (70)
T 1dx8_A 4 DEGKYECEACGYIYEPE 20 (70)
T ss_dssp CSSCEEETTTCCEECTT
T ss_pred CCceEEeCCCCEEEcCC
Confidence 35678999999888754
No 35
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=40.92 E-value=24 Score=27.70 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC-----------CCCCCCC--CCCccccccCCCC-ccccccc-CCCCCHHHH
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG-----------IPDFRGP--NGVWTLEKKGIKP-KVNISFD-DAVPTVTHM 96 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG-----------IPdFR~~--~Glw~~~~~~~~p-~~~~~f~-~~~Pn~~H~ 96 (258)
+.+++++++|.++++ |++.|.|-|...+ ++.+--. ...+.......++ .....+. ..+....-.
T Consensus 27 ~~l~~~~~~i~~a~~-I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~ 105 (187)
T 3sho_A 27 EAIEAAVEAICRADH-VIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVA 105 (187)
T ss_dssp HHHHHHHHHHHHCSE-EEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSCCHHHHH
T ss_pred HHHHHHHHHHHhCCE-EEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCCCHHHHH
Confidence 568899999999985 5788999886543 2211111 0000000001111 1112222 223334455
Q ss_pred HHHHHHHcCCCcEEEeccCcchHhh
Q psy8970 97 AILELVNRGKVHYVVSQNIDGLHLR 121 (258)
Q Consensus 97 ~L~~L~~~g~~~~viTQNIDgLh~k 121 (258)
++..+.++|-..-.||.|-++-..+
T Consensus 106 ~~~~ak~~g~~vi~IT~~~~s~l~~ 130 (187)
T 3sho_A 106 ALAGAAERGVPTMALTDSSVSPPAR 130 (187)
T ss_dssp HHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred HHHHHHHCCCCEEEEeCCCCCcchh
Confidence 6666667787778899887765433
No 36
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=40.77 E-value=16 Score=28.76 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC-----------CCCCCCCCCCccccccCCCC-cccccccC-CCCCHHHHHH
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG-----------IPDFRGPNGVWTLEKKGIKP-KVNISFDD-AVPTVTHMAI 98 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG-----------IPdFR~~~Glw~~~~~~~~p-~~~~~f~~-~~Pn~~H~~L 98 (258)
+.+++++++|.++++| ++.|.|-|...+ ++.+--.+ .. ....++ .....+.. -+....-.++
T Consensus 25 ~~i~~~~~~i~~a~~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-~~---~~~~~~~d~vI~iS~sG~t~~~~~~~ 99 (186)
T 1m3s_A 25 EEADQLADHILSSHQI-FTAGAGRSGLMAKSFAMRLMHMGFNAHIVGE-IL---TPPLAEGDLVIIGSGSGETKSLIHTA 99 (186)
T ss_dssp HHHHHHHHHHHHCSCE-EEECSHHHHHHHHHHHHHHHHTTCCEEETTS-TT---CCCCCTTCEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCeE-EEEecCHHHHHHHHHHHHHHhcCCeEEEeCc-cc---ccCCCCCCEEEEEcCCCCcHHHHHHH
Confidence 5788999999999876 567999886433 21111000 00 001111 11122221 2222344456
Q ss_pred HHHHHcCCCcEEEeccCcchH
Q psy8970 99 LELVNRGKVHYVVSQNIDGLH 119 (258)
Q Consensus 99 ~~L~~~g~~~~viTQNIDgLh 119 (258)
..+.++|-..-.||.|-+.-.
T Consensus 100 ~~ak~~g~~vi~IT~~~~s~l 120 (186)
T 1m3s_A 100 AKAKSLHGIVAALTINPESSI 120 (186)
T ss_dssp HHHHHTTCEEEEEESCTTSHH
T ss_pred HHHHHCCCEEEEEECCCCCch
Confidence 666667776778999877643
No 37
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=40.69 E-value=24 Score=33.33 Aligned_cols=30 Identities=10% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
....+.+++++++|++|++.||+.|.|...
T Consensus 193 ~~~~~~i~~~~~~l~~a~rpvil~G~g~~~ 222 (568)
T 2wvg_A 193 ASLNAAVEETLKFIANRDKVAVLVGSKLRA 222 (568)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEECTTTTT
T ss_pred cccHHHHHHHHHHHHhCCCCEEEECccccc
Confidence 344567999999999999999999999863
No 38
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=39.57 E-value=9.4 Score=30.36 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=14.2
Q ss_pred HHhccCCEEEEEecCc
Q psy8970 199 YNSSIADLSICLGKCL 214 (258)
Q Consensus 199 ~~~~~~Dl~lvvGTSl 214 (258)
+.+++||++|++|+.+
T Consensus 103 ~~~~~aDlvl~iG~~~ 118 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKK 118 (170)
T ss_dssp SSSCCCSEEEEESCCH
T ss_pred HHhhcCCEEEEECCcc
Confidence 4578999999999988
No 39
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=39.36 E-value=16 Score=29.47 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=19.7
Q ss_pred HHHH-HHHHHhCCcEEEEeCCccC
Q psy8970 34 IKVL-SEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 34 l~~l-a~~i~~a~~ivv~tGAGiS 56 (258)
++++ +++|++|++-|++.|. +.
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~ 46 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DM 46 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CC
T ss_pred HHHHHHHHHHcCCCCEEEECC-CC
Confidence 6788 9999999999999998 64
No 40
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=37.59 E-value=22 Score=33.34 Aligned_cols=30 Identities=7% Similarity=-0.069 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
+....+.+++++++|++|++.||+.|.|+.
T Consensus 192 ~~~~~~~i~~~~~~l~~a~rpvil~G~g~~ 221 (552)
T 1ovm_A 192 SACLKAFRDAAENKLAMSKRTALLADFLVL 221 (552)
T ss_dssp HHHHHHHHHHHHHHHHTCSCEEEEECHHHH
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 345567899999999999999999999985
No 41
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=37.39 E-value=27 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 29 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 29 ~~~~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
.+++.++.+++.|.++++| ++.|.|-|...
T Consensus 30 ~i~~~~~~i~~~i~~a~~I-~i~G~G~S~~~ 59 (199)
T 1x92_A 30 YIEQASLVMVNALLNEGKI-LSCGNGGSAGD 59 (199)
T ss_dssp HHHHHHHHHHHHHHTTCCE-EEECSTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEE-EEEcCchhHHH
Confidence 4566667777889999876 57799987643
No 42
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=37.18 E-value=25 Score=27.32 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCccccccc--ccceeecccCCcccccchh
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAEL--HGNMYVDQCNKCERQFVRK 151 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~el--HGsl~~~~C~~C~~~~~~~ 151 (258)
...+...++.|..|++.|.+..+-..|= ...|++ +..-.++.|..||+..+.+
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~-----------~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 112 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKS-----------GRRYEIAAKEHHDHIICLHCGKIIEFA 112 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTT-----------EEEEEESCSCCCEEEEETTTCCEEEEC
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCC-----------ceEEEecCCCCceEEEECCCCCEEEec
Confidence 5566788999999999998876655441 112332 1223679999999876543
No 43
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=37.08 E-value=20 Score=28.03 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCccCC-----------CCCCCCCCCCccccccCCCC-ccccccc-CCCCCHHHHH
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAG-----------IPDFRGPNGVWTLEKKGIKP-KVNISFD-DAVPTVTHMA 97 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~SG-----------IPdFR~~~Glw~~~~~~~~p-~~~~~f~-~~~Pn~~H~~ 97 (258)
.+.+++++++|.++++| ++.|.|-|...+ ++.+--.+. . ....++ .....+. ..+....-.+
T Consensus 27 ~~~i~~~~~~i~~a~~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-~---~~~~~~~d~vi~iS~sG~t~~~~~~ 101 (180)
T 1jeo_A 27 KNKLDSLIDRIIKAKKI-FIFGVGRSGYIGRCFAMRLMHLGFKSYFVGET-T---TPSYEKDDLLILISGSGRTESVLTV 101 (180)
T ss_dssp HHHHHHHHHHHHHCSSE-EEECCHHHHHHHHHHHHHHHHTTCCEEETTST-T---CCCCCTTCEEEEEESSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCEE-EEEeecHHHHHHHHHHHHHHHcCCeEEEeCCC-c---cccCCCCCEEEEEeCCCCcHHHHHH
Confidence 36789999999999976 567999876533 221111000 0 000111 1112222 1222334456
Q ss_pred HHHHHHcCCCcEEEeccCcchH
Q psy8970 98 ILELVNRGKVHYVVSQNIDGLH 119 (258)
Q Consensus 98 L~~L~~~g~~~~viTQNIDgLh 119 (258)
+..+.++|-..-.||.|-++|.
T Consensus 102 ~~~ak~~g~~vi~IT~~~~sl~ 123 (180)
T 1jeo_A 102 AKKAKNINNNIIAIVCECGNVV 123 (180)
T ss_dssp HHHHHTTCSCEEEEESSCCGGG
T ss_pred HHHHHHCCCcEEEEeCCCChHH
Confidence 6666667777779999988833
No 44
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=36.84 E-value=20 Score=35.83 Aligned_cols=38 Identities=11% Similarity=-0.011 Sum_probs=22.2
Q ss_pred CCCCCCCeecceEEEcCCCCChHHHHHHHHHhccCCEEEEEe
Q psy8970 170 GFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLG 211 (258)
Q Consensus 170 ~c~~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~~~~Dl~lvvG 211 (258)
.|+.||-.+ .+.+..-.++.++.|.+.+++-.++.+=|
T Consensus 185 aC~~CGP~l----~l~~~~~~~~~i~~aa~~L~~G~IVa~pt 222 (761)
T 3vth_A 185 ACFDCGPSL----SFVGEGCFDDEIKCVAKALKEGKIVAIKG 222 (761)
T ss_dssp CCTTTSCCE----EEESSCCCSCHHHHHHHHHHTTCCEEEEC
T ss_pred cCCccCCee----EEeCCCCchHHHHHHHHHHHcCCEEEEEC
Confidence 377998433 33322113345777888887777666544
No 45
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=36.77 E-value=37 Score=32.01 Aligned_cols=42 Identities=10% Similarity=-0.082 Sum_probs=29.6
Q ss_pred HHHHHhccCCEEEEEecCceeE--------------EEEcCCCCCCCC--cccEEEEe
Q psy8970 196 MGDYNSSIADLSICLGKCLLSF--------------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V~--------------v~iN~~~t~~d~--~adl~i~~ 237 (258)
.+.+.+++||++|++|+.+.-. |.|+.++...+. ..++.|.+
T Consensus 271 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 328 (556)
T 3hww_A 271 KATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIA 328 (556)
T ss_dssp HHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSEEEEEESSCSCCCTTCCSEEEEES
T ss_pred hhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCeEEEECCCCccCCCCCCceEEEEc
Confidence 4566788999999999987311 778877776654 34565544
No 46
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=36.63 E-value=27 Score=33.25 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|..
T Consensus 201 ~~~i~~~~~~l~~a~rpvIl~G~g~~ 226 (590)
T 1ybh_A 201 DSHLEQIVRLISESKKPVLYVGGGCL 226 (590)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred HHHHHHHHHHHHhCCCcEEEECcccc
Confidence 45688999999999999999999975
No 47
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=36.29 E-value=15 Score=28.87 Aligned_cols=90 Identities=18% Similarity=0.132 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC-----------CCCCCCCCC-CccccccCCCC-cccccccC-CCCCHHHHH
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG-----------IPDFRGPNG-VWTLEKKGIKP-KVNISFDD-AVPTVTHMA 97 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG-----------IPdFR~~~G-lw~~~~~~~~p-~~~~~f~~-~~Pn~~H~~ 97 (258)
+.+++++++|.++++-|++.|.|-|...+ ++.+--.++ .........++ ...+.+.. ......-.+
T Consensus 36 ~~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~ 115 (183)
T 2xhz_A 36 QNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITAL 115 (183)
T ss_dssp HHHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHH
Confidence 37899999999998556788999887543 221110000 00000000111 11222222 222334455
Q ss_pred HHHHHHcCCCcEEEeccCcchHhh
Q psy8970 98 ILELVNRGKVHYVVSQNIDGLHLR 121 (258)
Q Consensus 98 L~~L~~~g~~~~viTQNIDgLh~k 121 (258)
+..+.++|-..-.||.|-++-..+
T Consensus 116 ~~~ak~~g~~vi~IT~~~~s~la~ 139 (183)
T 2xhz_A 116 IPVLKRLHVPLICITGRPESSMAR 139 (183)
T ss_dssp HHHHHTTTCCEEEEESCTTSHHHH
T ss_pred HHHHHHCCCCEEEEECCCCChhHH
Confidence 666666777677889888764433
No 48
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=35.95 E-value=14 Score=27.22 Aligned_cols=13 Identities=54% Similarity=0.836 Sum_probs=11.3
Q ss_pred cEEEEeCCccCcc
Q psy8970 46 HVVLHTGAGISTS 58 (258)
Q Consensus 46 ~ivv~tGAGiS~~ 58 (258)
+|++.+|+|+|++
T Consensus 6 kIlvvC~~G~~TS 18 (109)
T 2l2q_A 6 NILLVCGAGMSTS 18 (109)
T ss_dssp EEEEESSSSCSSC
T ss_pred EEEEECCChHhHH
Confidence 5899999999876
No 49
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=35.94 E-value=24 Score=33.22 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
....+.+++++++|++|++.||+.|.|..
T Consensus 195 ~~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (563)
T 2vk8_A 195 ESEKEVIDTILVLDKDAKNPVILADACCS 223 (563)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 34456799999999999999999999974
No 50
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=35.93 E-value=14 Score=30.17 Aligned_cols=15 Identities=13% Similarity=0.202 Sum_probs=12.3
Q ss_pred eeecccCCcccccch
Q psy8970 136 MYVDQCNKCERQFVR 150 (258)
Q Consensus 136 l~~~~C~~C~~~~~~ 150 (258)
...++|..||..|..
T Consensus 153 ~~~~~C~~CG~~~~g 167 (191)
T 1lko_A 153 ATKWRCRNCGYVHEG 167 (191)
T ss_dssp EEEEEETTTCCEEEE
T ss_pred CceEEECCCCCEeeC
Confidence 557999999988764
No 51
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=35.74 E-value=25 Score=22.70 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=11.3
Q ss_pred ecccCCcccccchh
Q psy8970 138 VDQCNKCERQFVRK 151 (258)
Q Consensus 138 ~~~C~~C~~~~~~~ 151 (258)
..+|..|+..|+.+
T Consensus 2 ~~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 2 KLSCKICGYIYDED 15 (52)
T ss_dssp EEEESSSSCEEETT
T ss_pred cEEeCCCCeEECCC
Confidence 57899999888754
No 52
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=35.65 E-value=21 Score=33.74 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.+.+++++++|++|++.||+.|.|+..+
T Consensus 215 ~~~i~~~~~~l~~a~rpvil~G~g~~~~ 242 (570)
T 2vbf_A 215 QVILSKIEESLKNAQKPVVIAGHEVISF 242 (570)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCEEEECcCcccc
Confidence 6779999999999999999999998643
No 53
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=35.51 E-value=25 Score=33.28 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
+....+.+++++++|++|++.||+.|.|+.
T Consensus 205 ~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~ 234 (565)
T 2nxw_A 205 RDALAACADEVLAAMRSATSPVLMVCVEVR 234 (565)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred chhhHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 344557899999999999999999999875
No 54
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=35.39 E-value=27 Score=33.41 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
..+.+++++++|++|++.||+.|.|.+
T Consensus 198 ~~~~i~~~~~~l~~A~rPvIl~G~g~~ 224 (603)
T 4feg_A 198 DVQAVTRLTQTLLAAERPLIYYGIGAR 224 (603)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred CHHHHHHHHHHHhcCCCeEEEECCCch
Confidence 345788999999999999999999983
No 55
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=35.21 E-value=29 Score=33.84 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|+.
T Consensus 276 ~~~i~~a~~~L~~AkrPvIl~G~g~~ 301 (677)
T 1t9b_A 276 MQSINKAADLINLAKKPVLYVGAGIL 301 (677)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECGGGG
T ss_pred HHHHHHHHHHHHhCCCeEEEECcccc
Confidence 46799999999999999999999984
No 56
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=34.89 E-value=18 Score=29.03 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCcEEEEeCCccCccCCCCCCCCCCCCccccccCCCCcccccccCCCCCHHHHHHHHHHHcCCCcEEEecc
Q psy8970 35 KVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQN 114 (258)
Q Consensus 35 ~~la~~i~~a~~ivv~tGAGiS~~SGIPdFR~~~Glw~~~~~~~~p~~~~~f~~~~Pn~~H~~L~~L~~~g~~~~viTQN 114 (258)
+++.+++++++.-||++|||+++. +|..=.. ....|-...-. ...-.+--+|-.+.+.-.-.-|-|-|
T Consensus 41 ~~~~~~~~~a~~~ViIa~AG~aa~--Lpgvva~--------~t~~PVIgVP~--~~~l~G~daLlS~vqmP~gvpVatV~ 108 (157)
T 2ywx_A 41 ELVEEIVKNSKADVFIAIAGLAAH--LPGVVAS--------LTTKPVIAVPV--DAKLDGLDALLSSVQMPPGIPVATVG 108 (157)
T ss_dssp HHHHHHHHHCCCSEEEEEEESSCC--HHHHHHT--------TCSSCEEEEEE--CSSGGGHHHHHHHHSCCTTSCCEECC
T ss_pred HHHHHHHHhcCCCEEEEEcCchhh--hHHHHHh--------ccCCCEEEecC--CCccCcHHHHHHHhcCCCCCeeEEEe
Confidence 456677777766889999999754 4432211 01122211111 11122344555566642223378889
Q ss_pred CcchHhhc
Q psy8970 115 IDGLHLRS 122 (258)
Q Consensus 115 IDgLh~kA 122 (258)
|||-+-.|
T Consensus 109 I~~~~nAa 116 (157)
T 2ywx_A 109 IDRGENAA 116 (157)
T ss_dssp TTCHHHHH
T ss_pred cCCcHHHH
Confidence 99876443
No 57
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=34.86 E-value=22 Score=28.64 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC-----------CCCCCCCCCCccccccCCCC-cccccccC-CCCCHHHHHH
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG-----------IPDFRGPNGVWTLEKKGIKP-KVNISFDD-AVPTVTHMAI 98 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG-----------IPdFR~~~Glw~~~~~~~~p-~~~~~f~~-~~Pn~~H~~L 98 (258)
+.+++++++|.++++| ++.|.|-|...+ ++.+--.+. . ....++ ...+.+.. -+....-.++
T Consensus 35 ~~l~~~~~~i~~a~~I-~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-~---~~~~~~~DvvI~iS~SG~t~~~i~~~ 109 (200)
T 1vim_A 35 ETVGEMIKLIDSARSI-FVIGAGRSGYIAKAFAMRLMHLGYTVYVVGET-V---TPRITDQDVLVGISGSGETTSVVNIS 109 (200)
T ss_dssp HHHHHHHHHHHHSSCE-EEECSHHHHHHHHHHHHHHHHTTCCEEETTST-T---CCCCCTTCEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCEE-EEEEecHHHHHHHHHHHHHHhcCCeEEEeCCc-c---ccCCCCCCEEEEEeCCCCcHHHHHHH
Confidence 5688999999999865 678999885432 222111100 0 001111 11222222 2222334455
Q ss_pred HHHHHcCCCcEEEeccCcchH
Q psy8970 99 LELVNRGKVHYVVSQNIDGLH 119 (258)
Q Consensus 99 ~~L~~~g~~~~viTQNIDgLh 119 (258)
..+.++|-..-.||.|-+.-.
T Consensus 110 ~~ak~~g~~vI~IT~~~~s~L 130 (200)
T 1vim_A 110 KKAKDIGSKLVAVTGKRDSSL 130 (200)
T ss_dssp HHHHHHTCEEEEEESCTTSHH
T ss_pred HHHHHCCCeEEEEECCCCChH
Confidence 566667777778999887644
No 58
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=34.85 E-value=15 Score=29.65 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=12.8
Q ss_pred ccCCEEEEEecCce
Q psy8970 202 SIADLSICLGKCLL 215 (258)
Q Consensus 202 ~~~Dl~lvvGTSl~ 215 (258)
++|||+|+||+.+.
T Consensus 107 ~~aDLvI~iG~rf~ 120 (174)
T 1ytl_A 107 GNYDLVLMLGSIYY 120 (174)
T ss_dssp CCCSEEEEESCCHH
T ss_pred CCCCEEEEECCcCC
Confidence 89999999999883
No 59
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=34.70 E-value=8.8 Score=29.31 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.8
Q ss_pred CCcEEEEeCCccCccC
Q psy8970 44 AKHVVLHTGAGISTSA 59 (258)
Q Consensus 44 a~~ivv~tGAGiS~~S 59 (258)
-++|++.+|+|||++.
T Consensus 13 ~kkIlvVC~sGmgTS~ 28 (125)
T 1vkr_A 13 VRKIIVACDAGMGSSA 28 (125)
T ss_dssp CCEEEECCSSSSHHHH
T ss_pred ccEEEEECCCcHHHHH
Confidence 4689999999999874
No 60
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=34.63 E-value=21 Score=25.72 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=13.2
Q ss_pred eeecccCCcccccchh
Q psy8970 136 MYVDQCNKCERQFVRK 151 (258)
Q Consensus 136 l~~~~C~~C~~~~~~~ 151 (258)
+..++|..||..|+.+
T Consensus 33 m~~y~C~vCGyvYD~~ 48 (87)
T 1s24_A 33 YLKWICITCGHIYDEA 48 (87)
T ss_dssp CCEEEETTTTEEEETT
T ss_pred CceEECCCCCeEecCC
Confidence 5679999999888754
No 61
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=34.00 E-value=11 Score=28.08 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=12.6
Q ss_pred CCcEEEEeCCccCcc
Q psy8970 44 AKHVVLHTGAGISTS 58 (258)
Q Consensus 44 a~~ivv~tGAGiS~~ 58 (258)
-.+|+++++||+|++
T Consensus 6 ~mkIlL~C~aGmSTs 20 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSA 20 (108)
T ss_dssp CEEEEEEESSSSHHH
T ss_pred CceEEEECCCCCCHH
Confidence 457999999999976
No 62
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=33.78 E-value=30 Score=32.77 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|..
T Consensus 194 ~~~i~~~~~~l~~a~rpvil~G~g~~ 219 (566)
T 1ozh_A 194 DDAIDQVAKLIAQAKNPIFLLGLMAS 219 (566)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGG
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 35688999999999999999999974
No 63
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=33.29 E-value=40 Score=27.88 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
+.+++..+.+++.|+++++|. +.|.|-|...+
T Consensus 26 ~~i~~a~~~l~~~i~~~~~I~-i~G~G~S~~~A 57 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFY-VFGSGHSHMIA 57 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEE-EEESGGGHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEE-EEcCcHHHHHH
Confidence 334444445555566677764 66999887544
No 64
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=33.11 E-value=23 Score=33.42 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|..
T Consensus 198 ~~~i~~~~~~l~~a~rpvIl~G~g~~ 223 (564)
T 2q28_A 198 PKSVTSAISLLAKAERPLIILGKGAA 223 (564)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEECcccc
Confidence 45688999999999999999999985
No 65
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=31.99 E-value=26 Score=32.96 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=27.7
Q ss_pred HHHHhccCCEEEEEecCceeE---------EEEcCCCCCCCC--cccEEEEe
Q psy8970 197 GDYNSSIADLSICLGKCLLSF---------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V~---------v~iN~~~t~~d~--~adl~i~~ 237 (258)
+.+.+++||++|++|+.+... |.|+.++...+. ..++.|.+
T Consensus 259 ~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 310 (549)
T 3eya_A 259 GFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVG 310 (549)
T ss_dssp HHHHHHHCSEEEEESCCCCCGGGSCSSSEEEEEESCGGGTTSSSCCSEEEEC
T ss_pred HHHHHHhCCEEEEECCCCCccccCCCCCeEEEEeCCHHHhCCCCCCCeEEEe
Confidence 456678999999999987532 667776665543 34555544
No 66
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=31.87 E-value=25 Score=33.22 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|..
T Consensus 200 ~~~i~~~~~~l~~a~rpvIl~G~g~~ 225 (568)
T 2c31_A 200 EDAIARAADLIKNAKRPVIMLGKGAA 225 (568)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECcccc
Confidence 35688999999999999999999985
No 67
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=30.45 E-value=36 Score=32.38 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCcc
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGI 55 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGi 55 (258)
+.+++++++|++|++.||+.|.|+
T Consensus 193 ~~i~~~~~~l~~a~rpvil~G~g~ 216 (590)
T 1v5e_A 193 QDIDAAVELLNNSKRPVIYAGIGT 216 (590)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGG
T ss_pred HHHHHHHHHHHhCCCeEEEEcCch
Confidence 568899999999999999999998
No 68
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=30.45 E-value=37 Score=26.53 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
+++..+.+++.|+++++| ++.|.|-|...+
T Consensus 28 i~~~~~~i~~~l~~~~~I-~i~G~G~S~~~a 57 (188)
T 1tk9_A 28 IAKVGELLCECLKKGGKI-LICGNGGSAADA 57 (188)
T ss_dssp HHHHHHHHHHHHHTTCCE-EEEESTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEE-EEEeCcHhHHHH
Confidence 344444445566778775 567999887543
No 69
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=30.20 E-value=11 Score=27.85 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=12.7
Q ss_pred CcEEEEeCCccCcc
Q psy8970 45 KHVVLHTGAGISTS 58 (258)
Q Consensus 45 ~~ivv~tGAGiS~~ 58 (258)
++|++.+|+|+|++
T Consensus 19 ~kIlvvC~sG~gTS 32 (110)
T 3czc_A 19 VKVLTACGNGMGSS 32 (110)
T ss_dssp EEEEEECCCCHHHH
T ss_pred cEEEEECCCcHHHH
Confidence 67999999999987
No 70
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=29.65 E-value=32 Score=29.91 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
+.++.+++.|+++++| ++.|+|-|...+
T Consensus 59 ~~i~~i~~~l~~a~rI-~~~G~G~S~~lA 86 (306)
T 1nri_A 59 LAVEQIVQAFQQGGRL-IYIGAGTSGRLG 86 (306)
T ss_dssp HHHHHHHHHHHTTCCE-EEEESHHHHHHH
T ss_pred HHHHHHHHHHHcCCEE-EEEeccHhHHHH
Confidence 5677788888888776 567999986544
No 71
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=29.60 E-value=22 Score=28.57 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=10.7
Q ss_pred eecccCCcccccc
Q psy8970 137 YVDQCNKCERQFV 149 (258)
Q Consensus 137 ~~~~C~~C~~~~~ 149 (258)
..++|+.||..+.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 4578999998876
No 72
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=29.53 E-value=45 Score=26.25 Aligned_cols=29 Identities=24% Similarity=0.206 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
+++..+.+++.++++++| ++.|.|-|...
T Consensus 34 i~~~~~~i~~~i~~~~~I-~i~G~G~S~~~ 62 (198)
T 2xbl_A 34 VRKVADACIASIAQGGKV-LLAGNGGSAAD 62 (198)
T ss_dssp HHHHHHHHHHHHHTTCCE-EEECSTHHHHH
T ss_pred HHHHHHHHHHHHHcCCEE-EEEeCcHhhHH
Confidence 333444444445677765 57899988753
No 73
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=29.20 E-value=43 Score=28.39 Aligned_cols=61 Identities=21% Similarity=0.136 Sum_probs=28.7
Q ss_pred CchhhcccCCCCCCCCC----CCCCCcCCChHHHHHHHHHHHHHHHhC--CcEEEEeCCccCccCCC
Q psy8970 1 MSCNYAEGLSPYENKGK----LGLAETFDSKEDFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (258)
Q Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~e~~~~~~~~~~~l~~la~~i~~a--~~ivv~tGAGiS~~SGI 61 (258)
||.+|..-+....+.|. +-.|+.-.-..++.+.|.++.+.+... =++||+||+|=.-.+|.
T Consensus 1 m~~~~~~~~~~~~~~~v~~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~ 67 (263)
T 3l3s_A 1 MSLSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGH 67 (263)
T ss_dssp -------CEEEEESSSEEEEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCS
T ss_pred CCCCccceEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCc
Confidence 56666555444333332 134443222344444555555555543 38999999996666664
No 74
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=28.95 E-value=30 Score=32.78 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
..+.+++++++|++|++.||+.|.|..
T Consensus 202 ~~~~v~~~~~~l~~a~rpvIl~G~g~~ 228 (573)
T 2iht_A 202 WQKAADQAAALLAEAKHPVLVVGAAAI 228 (573)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred CHHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 456789999999999999999999974
No 75
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=28.89 E-value=30 Score=32.65 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|..
T Consensus 191 ~~~v~~~~~~l~~a~rpvil~G~g~~ 216 (563)
T 2uz1_A 191 PADLDQALALLRKAERPVIVLGSEAS 216 (563)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccc
Confidence 45688999999999999999999975
No 76
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=28.44 E-value=31 Score=32.98 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
.+.+++++++|++|++.||+.|.|+.
T Consensus 213 ~~~i~~~~~~l~~a~rpvil~G~g~~ 238 (616)
T 2pan_A 213 RMQIEKAVEMLIQAERPVIVAGGGVI 238 (616)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 56789999999999999999999984
No 77
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=28.33 E-value=29 Score=30.02 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
+.+..|+++++.+++|.|+.|+|+..+
T Consensus 156 ~g~~~L~~Lv~~a~~i~Im~GgGv~~~ 182 (256)
T 1twd_A 156 QGLSKIMELIAHRDAPIIMAGAGVRAE 182 (256)
T ss_dssp TTHHHHHHHHTSSSCCEEEEESSCCTT
T ss_pred HHHHHHHHHHHhhCCcEEEecCCcCHH
Confidence 456677777777779999999999764
No 78
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=26.88 E-value=48 Score=26.79 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=13.0
Q ss_pred HHHhCCcEEEEeCCccCcc
Q psy8970 40 WIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 40 ~i~~a~~ivv~tGAGiS~~ 58 (258)
.|.++++| ++.|.|-|..
T Consensus 60 ~l~~~~~I-~i~G~G~S~~ 77 (212)
T 2i2w_A 60 SFKAGGKV-LSCGNGGSHC 77 (212)
T ss_dssp HHHTTCCE-EEEESTHHHH
T ss_pred HHHCCCEE-EEEeCCHHHH
Confidence 36777765 5779998875
No 79
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=26.38 E-value=55 Score=28.35 Aligned_cols=29 Identities=7% Similarity=0.249 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 26 SKEDFDKKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 26 ~~~~~~~~l~~la~~i~~a~~ivv~tGAG 54 (258)
+++.++.-.++++++.++...+|+++|+|
T Consensus 70 d~~~i~~la~~I~~l~~~G~~vviV~GgG 98 (281)
T 3nwy_A 70 DPDVVAQVARQIADVVRGGVQIAVVIGGG 98 (281)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHHHCCCeEEEEECCh
Confidence 34556666677777777778999999987
No 80
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=26.25 E-value=31 Score=32.88 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
+.+++++++|++|++.||+.|.|...
T Consensus 231 ~~i~~~~~~l~~A~rPvIl~G~g~~~ 256 (604)
T 2x7j_A 231 ESLSDVAEMLAEAEKGMIVCGELHSD 256 (604)
T ss_dssp GGGHHHHHHHHHCSSEEEEECCCCCH
T ss_pred hhHHHHHHHHhhcCCeEEEECCCCcH
Confidence 45788999999999999999999843
No 81
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*
Probab=25.41 E-value=93 Score=23.21 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.+.+.+.++.+.+.+++.+.|+|.+-||+|-+
T Consensus 72 ~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs 103 (157)
T 3rgo_A 72 LANLHKGVQFALKYQALGQCVYVHCKAGRSRS 103 (157)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEESSSSSSHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCChH
Confidence 34455556566666666689999999998754
No 82
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=25.31 E-value=36 Score=32.38 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
+.+++++++|++|++.||+.|.|..
T Consensus 193 ~~v~~~~~~l~~a~rpvIl~G~g~~ 217 (589)
T 2pgn_A 193 EDVREAAAQLVAAKNPVILAGGGVA 217 (589)
T ss_dssp HHHHHHHHHHHHCSSEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcc
Confidence 6789999999999999999999975
No 83
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=25.20 E-value=32 Score=32.13 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCccC
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAGiS 56 (258)
+.+++++++|++|++.||+.|.|..
T Consensus 188 ~~i~~~~~~l~~a~rpvil~G~g~~ 212 (528)
T 1q6z_A 188 QDLDILVKALNSASNPAIVLGPDVD 212 (528)
T ss_dssp HHHHHHHHHHHHCSSCEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEECCccc
Confidence 4688999999999999999999963
No 84
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=25.15 E-value=45 Score=26.37 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 32 KKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 32 ~~l~~la~~i~~a~~ivv~tGAG 54 (258)
+.++.+.+.|.+|++|||-|..+
T Consensus 24 EEv~~Ir~~I~nakkIvV~t~N~ 46 (156)
T 3brc_A 24 EEVEAIRKYIRSARRTVVPNWNA 46 (156)
T ss_dssp HHHHHHHHHHHHCSCEEECCCCH
T ss_pred HHHHHHHHHHhcCCeEEEecCCc
Confidence 45668899999999999988665
No 85
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=25.08 E-value=34 Score=32.68 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=15.7
Q ss_pred HHHHhccCCEEEEEecCce
Q psy8970 197 GDYNSSIADLSICLGKCLL 215 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~ 215 (258)
+.+.+++||++|++|+.+.
T Consensus 270 ~~~~l~~aDlvl~iG~~~~ 288 (603)
T 4feg_A 270 ANEALAQADVVLFVGNNYP 288 (603)
T ss_dssp HHHHHHHCSEEEEESCCCT
T ss_pred HHHHHHhCCEEEEECCCCC
Confidence 4566789999999999764
No 86
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=24.64 E-value=81 Score=29.68 Aligned_cols=41 Identities=7% Similarity=-0.095 Sum_probs=27.8
Q ss_pred HHHHhccCCEEEEEecC-ceeE-------------EEEcCCCCCCCC--cccEEEEe
Q psy8970 197 GDYNSSIADLSICLGKC-LLSF-------------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTS-l~V~-------------v~iN~~~t~~d~--~adl~i~~ 237 (258)
+.+.++++|++|++|+. +.-. |.|+.++...+. ..++.|.+
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 337 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVT 337 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHCCSSCCEEEEEESSCCSCTTTCCCSEEEES
T ss_pred HHHHHhhCCEEEEECCCccccccccccCCCCCCeEEEEeCCHHHhCCCcCCCeeEeC
Confidence 45667899999999998 6211 677777766554 34565544
No 87
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.55 E-value=37 Score=25.72 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCccccccc--ccceeecccCCcccccchh
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAEL--HGNMYVDQCNKCERQFVRK 151 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~el--HGsl~~~~C~~C~~~~~~~ 151 (258)
...+...++.|..|++.|.+..+-..| | ...|++ +..-.++.|..||+..+.+
T Consensus 50 ~is~aTVYR~L~~L~e~Glv~~~~~~~--~---------~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 104 (136)
T 1mzb_A 50 DVGLATVYRVLTQFEAAGLVVRHNFDG--G---------HAVFELADSGHHDHMVCVDTGEVIEFM 104 (136)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEECSSS--S---------SCEEEESSSCCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--C---------ceEEEeCCCCcceEEEECCCCCEEEec
Confidence 456667899999999999876543211 1 122332 1123568999999876643
No 88
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.54 E-value=34 Score=26.29 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCccccccc--ccceeecccCCcccccchh
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAEL--HGNMYVDQCNKCERQFVRK 151 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~el--HGsl~~~~C~~C~~~~~~~ 151 (258)
...+...++.|..|++.|.+..+-..| |- ..|++ +..-.++.|..||+.++.+
T Consensus 49 ~is~~TVYR~L~~L~e~Glv~~i~~~~--~~---------~~Y~~~~~~~H~HliC~~Cg~v~~~~ 103 (145)
T 3eyy_A 49 GINISTVYRTLELLEELGLVSHAHLGH--GA---------PTYHLADRHHHIHLVCRDCTNVIEAD 103 (145)
T ss_dssp TCCHHHHHHHHHHHHHHTSEEEEECGG--GC---------EEEEETTSCCSEEEEESSSSCEEEEC
T ss_pred CCCHhHHHHHHHHHHHCCcEEEEEeCC--Cc---------eEEEeCCCCCceEEEECCCCCEEEec
Confidence 445667899999999999887665432 11 11222 1223568999999876543
No 89
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=24.45 E-value=1e+02 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHH----hCCcEEEEeCCccCccCCC
Q psy8970 28 EDFDKKIKVLSEWID----KAKHVVLHTGAGISTSAGI 61 (258)
Q Consensus 28 ~~~~~~l~~la~~i~----~a~~ivv~tGAGiS~~SGI 61 (258)
.++...+.++.++|. +.++|+|.+-||+|-++.+
T Consensus 67 ~~l~~~~~~~~~fI~~~~~~~~~VlVHC~~G~sRS~~v 104 (161)
T 3emu_A 67 HQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAI 104 (161)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHH
Confidence 344455555555554 4578999999999987543
No 90
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=24.41 E-value=15 Score=32.77 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHH----HHhCCcEEEEeCCccCcc--------CCCCCCCCCCCCccccccCCCCc
Q psy8970 28 EDFDKKIKVLSEW----IDKAKHVVLHTGAGISTS--------AGIPDFRGPNGVWTLEKKGIKPK 81 (258)
Q Consensus 28 ~~~~~~l~~la~~----i~~a~~ivv~tGAGiS~~--------SGIPdFR~~~Glw~~~~~~~~p~ 81 (258)
+.+...++++... |...+.||+.+|.|+++. .|+++-|--+|-|.......+|+
T Consensus 255 e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~~pe 320 (327)
T 3utn_X 255 EAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSGPE 320 (327)
T ss_dssp HHHHHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccccCCc
Confidence 4455555544332 334678999999999864 78887766578786443333444
No 91
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=24.07 E-value=48 Score=29.40 Aligned_cols=97 Identities=13% Similarity=-0.016 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHHHHH---hCCcEEEEeCCccCccCCCC---CCCCCC-CCccc----ccc--C----C-CCcccccc
Q psy8970 25 DSKEDFDKKIKVLSEWID---KAKHVVLHTGAGISTSAGIP---DFRGPN-GVWTL----EKK--G----I-KPKVNISF 86 (258)
Q Consensus 25 ~~~~~~~~~l~~la~~i~---~a~~ivv~tGAGiS~~SGIP---dFR~~~-Glw~~----~~~--~----~-~p~~~~~f 86 (258)
.-.....+.++++++.|. ++++| +++|.|-|..+|.. -|.... |+-.. ..+ . . .......+
T Consensus 18 t~~~l~~~~i~~~~~~i~~~~~a~~I-~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~i 96 (347)
T 3fkj_A 18 QGMSVAHENARRIISDILGKQNIERV-WFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILA 96 (347)
T ss_dssp CCCCHHHHHHHHHHHHHHTTSCCCEE-EEEESTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHSCCTTCSTTEEEEEE
T ss_pred HHhhcCHHHHHHHHHHHHhhCCCCEE-EEEEehHHHHHHHHHHHHHHHHhCCCeEEEeCcHHHHhhCcCCCCCCCEEEEE
Confidence 334445678999999999 66655 78899999876631 111000 11100 000 0 0 11122222
Q ss_pred c-CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhc
Q psy8970 87 D-DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRS 122 (258)
Q Consensus 87 ~-~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kA 122 (258)
. .-+-..+-.++....+.|-..-.||.|.++-..+.
T Consensus 97 S~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ 133 (347)
T 3fkj_A 97 SQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEY 133 (347)
T ss_dssp ESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHT
T ss_pred eCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhh
Confidence 2 22333455566666667877778898888866554
No 92
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=23.77 E-value=50 Score=31.32 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=28.1
Q ss_pred HHHHHhccCCEEEEEecCceeE--------------EEEcCCCCCCCC--cccEEEEe
Q psy8970 196 MGDYNSSIADLSICLGKCLLSF--------------LKCFFRKTKQNN--NTNLCGRV 237 (258)
Q Consensus 196 ~a~~~~~~~Dl~lvvGTSl~V~--------------v~iN~~~t~~d~--~adl~i~~ 237 (258)
.+.+.+++||++|++|+.+.-. |.|+.++...+. ..++.|.+
T Consensus 271 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 328 (590)
T 1ybh_A 271 YANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCG 328 (590)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTTSSSCCSEEEES
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhCCCcCCCeEEec
Confidence 3556678999999999986311 677777666554 44555543
No 93
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=23.18 E-value=1.1e+02 Score=22.83 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeCCccCccCC
Q psy8970 29 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (258)
Q Consensus 29 ~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SG 60 (258)
.+.+.++-+.+.+++.+.++|.+-||+|-++.
T Consensus 66 ~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~ 97 (144)
T 3s4e_A 66 YFPECFEFIEEAKRKDGVVLVHSNAGVSRAAA 97 (144)
T ss_dssp GHHHHHHHHHHHHHTTCCEEEECSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCchHHH
Confidence 34445555555555667999999999997643
No 94
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.13 E-value=46 Score=21.80 Aligned_cols=43 Identities=19% Similarity=0.398 Sum_probs=24.0
Q ss_pred cceeecccCCcccccchh-hhhhhcc--ccCCCCCCCCCCCCCCCCeecce
Q psy8970 134 GNMYVDQCNKCERQFVRK-SATNSVG--QKNLNISCPYRGFRPCRGTLHDT 181 (258)
Q Consensus 134 Gsl~~~~C~~C~~~~~~~-~~~~~~~--~~~~~~~C~~~~c~~Cgg~lrP~ 181 (258)
|++...+|..|++....+ ..+...+ ..+....| ..|+..|...
T Consensus 1 g~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C-----~~C~~~L~~~ 46 (72)
T 1x61_A 1 GSSGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVC-----STCRAQLRGQ 46 (72)
T ss_dssp CCSCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBC-----SSSCCBCTTS
T ss_pred CCCCCCCCccCCCccCCCceEEEECCCeEcccCCcc-----cccCCcCCcC
Confidence 677788999999865432 2222221 12223334 4888777543
No 95
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=22.82 E-value=53 Score=31.08 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEeCCccCc
Q psy8970 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (258)
Q Consensus 31 ~~~l~~la~~i~~a~~ivv~tGAGiS~ 57 (258)
.+.+++++++|++ ++.||+.|.|+..
T Consensus 211 ~~~i~~~~~~L~~-~rPvIl~G~g~~~ 236 (578)
T 3lq1_A 211 DSSIQKMVTECTG-KKGVFVVGPIDKK 236 (578)
T ss_dssp HHHHHHHHHHTTT-SCEEEEECSCCCT
T ss_pred hHHHHHHHHHhcc-CCeEEEECCCCCh
Confidence 4568999999999 9999999999863
No 96
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=22.75 E-value=43 Score=23.10 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=9.7
Q ss_pred CCcEEEEeCCccCccCCCCCCC
Q psy8970 44 AKHVVLHTGAGISTSAGIPDFR 65 (258)
Q Consensus 44 a~~ivv~tGAGiS~~SGIPdFR 65 (258)
.+.+.|+||-|.....|+|.-|
T Consensus 34 ~~~v~II~GkG~hS~~g~~~Lk 55 (82)
T 3fau_A 34 KPYLSVITGRGNHSQGGVARIK 55 (82)
T ss_dssp CCEEEEECCC---------CHH
T ss_pred ceEEEEEECCCCCCCCCcchHH
Confidence 3578999999975444554444
No 97
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=22.69 E-value=56 Score=24.30 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=10.3
Q ss_pred eeecccCCccccc
Q psy8970 136 MYVDQCNKCERQF 148 (258)
Q Consensus 136 l~~~~C~~C~~~~ 148 (258)
+...+|.+||..|
T Consensus 65 v~p~~C~~CG~~F 77 (105)
T 2gmg_A 65 IKPAQCRKCGFVF 77 (105)
T ss_dssp ECCCBBTTTCCBC
T ss_pred EECcChhhCcCee
Confidence 3457999999887
No 98
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.56 E-value=51 Score=25.43 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCccccccc--ccceeecccCCcccccchh
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAEL--HGNMYVDQCNKCERQFVRK 151 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~el--HGsl~~~~C~~C~~~~~~~ 151 (258)
...+...++.|..|++.|.+..+-..+ | ...|++ +..-.++.|..||+..+.+
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~--~---------~~~Y~~~~~~~H~HliC~~Cg~v~~~~ 103 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEG--G---------KSVFELSTQHHHDHLVCLDCGEVIEFS 103 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGG--G---------CEEEEECCSSCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCC--C---------ceEEEecCCCceeEEEECCCCCEEEec
Confidence 456667899999999999876554322 1 112332 1223568999999876543
No 99
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.48 E-value=57 Score=24.81 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchh
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRK 151 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~ 151 (258)
...+...++.|..|++.|.+..+-..+=-..+..... ++.-.++.|..||+..+.+
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~~~--------~~~H~HliC~~Cg~v~~~~ 100 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRCST--------GDHHHHLVCRACGKAVEVE 100 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECCSC--------SSCCEEEEETTTCCEEEEC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEECCC--------CCCccEEEECCCCCEeecc
Confidence 4556678999999999998876554221111111110 0123568999999976543
No 100
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.16 E-value=40 Score=22.48 Aligned_cols=17 Identities=24% Similarity=0.599 Sum_probs=12.3
Q ss_pred cceeecccCCcccccch
Q psy8970 134 GNMYVDQCNKCERQFVR 150 (258)
Q Consensus 134 Gsl~~~~C~~C~~~~~~ 150 (258)
|+++...|..|++....
T Consensus 1 ~s~~~~~C~~C~~~I~~ 17 (73)
T 1wig_A 1 GSSGSSGCDSCEKYITG 17 (73)
T ss_dssp CCCSCCSCSSSCCCCSS
T ss_pred CCcCcCCcccCCCEecC
Confidence 56677788888876543
No 101
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.09 E-value=52 Score=18.75 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=14.5
Q ss_pred cccceeecccCCcccccchhh
Q psy8970 132 LHGNMYVDQCNKCERQFVRKS 152 (258)
Q Consensus 132 lHGsl~~~~C~~C~~~~~~~~ 152 (258)
.|-.-....|..|++.+....
T Consensus 4 ~h~~~k~~~C~~C~k~f~~~~ 24 (45)
T 2epq_A 4 GSSGEKPYSCPVCGLRFKRKD 24 (45)
T ss_dssp CCSSCCSSEETTTTEECSCHH
T ss_pred CcCCCCCCcCCCCCcccCCHH
Confidence 344455678999998876544
No 102
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=21.86 E-value=31 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 30 ~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
.+...++++.+|++|+++||+-|=||.++
T Consensus 16 ~~~~~~~~a~~l~~A~~ViIVPGYGmAVA 44 (186)
T 2bru_C 16 REITAEETAELLKNSHSVIITPGYGMAVA 44 (186)
T ss_dssp ----CHHHHHHHHHCSEEEEECSBHHHHT
T ss_pred eecCHHHHHHHHHhCCeEEEECChHHHHH
Confidence 35567899999999999999999999876
No 103
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=21.82 E-value=40 Score=21.29 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=21.7
Q ss_pred ccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCCCCCCe
Q psy8970 133 HGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177 (258)
Q Consensus 133 HGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~~Cgg~ 177 (258)
|-.-....|..|++.|........+........|+ .||..
T Consensus 9 H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~-----~C~k~ 48 (62)
T 1vd4_A 9 STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCT-----FCHTE 48 (62)
T ss_dssp CCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCS-----SSCCB
T ss_pred cCCCCCccCCCCCchhccHHHhHhhcCCCCCEECC-----CCCCc
Confidence 43344578999998876544332222111223466 78743
No 104
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=21.44 E-value=76 Score=26.42 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCcc
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGI 55 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAGi 55 (258)
++.+..-.+.++++.+...++|++.|+|-
T Consensus 30 ~~~i~~~a~~I~~l~~~G~~vVlVhGgG~ 58 (247)
T 2a1f_A 30 PAILDRMAVEIKELVEMGVEVSVVLGGGN 58 (247)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCh
Confidence 44555556666666655678999999963
No 105
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=21.35 E-value=54 Score=27.06 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCcccccccccceeecccCCcccccchhhhhhhccccCCCCCCCCCCCC
Q psy8970 93 VTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFR 172 (258)
Q Consensus 93 ~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~elHGsl~~~~C~~C~~~~~~~~~~~~~~~~~~~~~C~~~~c~ 172 (258)
.+|-+|..=. -|-...+++.+.|.--..+ + ++|.+-.|--+...+.. .+...+..
T Consensus 18 TTHV~LtARA-fGA~~iil~~~~D~~v~es-v--~dV~~rWGG~F~ve~~~-----~wk~~ik~---------------- 72 (201)
T 2yy8_A 18 TTHVALTARA-FGADGIIIASEEDEKVKES-V--EDVVKRWGGPFFIEFNR-----NWRKVMKE---------------- 72 (201)
T ss_dssp HHHHHHHHHH-TTCSEEEESSSCCHHHHHH-H--HHHHHHHCSCCBCCBCS-----CHHHHHHH----------------
T ss_pred hhHHHHHHHH-hcCCeEEEcCCcChhHHHH-H--HHHHHhcCCceEEEECC-----CHHHHHHh----------------
Confidence 4787776433 4667788888877554443 2 46676666554443321 11111111
Q ss_pred CCCCeecceEEEcCCCCChHHHHHHHHHh-ccCCEEEEEecCceeE
Q psy8970 173 PCRGTLHDTILDWEHNLPQKDINMGDYNS-SIADLSICLGKCLLSF 217 (258)
Q Consensus 173 ~Cgg~lrP~Vv~fgE~~~~~~~~~a~~~~-~~~Dl~lvvGTSl~V~ 217 (258)
=|| ..-...|||+.+++- .....+.. +.-|++||||.. +|.
T Consensus 73 -wgG-~VVHLTMYG~~i~dv-i~eIr~~~~~~~~iLVVVGae-KVP 114 (201)
T 2yy8_A 73 -FTG-VKVHLTMYGLHVDDV-IEELKEKLKKGEDFMIIVGAE-KVP 114 (201)
T ss_dssp -CCS-EEEEEEEEEEEHHHH-HHHHHHHHHTTCCEEEEECSS-CCC
T ss_pred -cCC-EEEEEecCCCchHHH-HHHHHhhcccCCCEEEEECCC-cCC
Confidence 022 223677999988653 33332222 257999999986 555
No 106
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=21.33 E-value=1.2e+02 Score=22.35 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCcc
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~ 58 (258)
+.+.+-++.+.+.+++...++|.+-||+|-+
T Consensus 73 ~~~~~~~~~i~~~~~~~~~vlVHC~aG~~Rs 103 (151)
T 2img_A 73 DQIDRFVQIVDEANARGEAVGVHCALGFGRT 103 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSSSSSHH
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCCCChH
Confidence 3444455555555556679999999998844
No 107
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.32 E-value=62 Score=24.20 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEeccCcchHhhcCCCccccccc--ccceeecccCCcccccch
Q psy8970 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAEL--HGNMYVDQCNKCERQFVR 150 (258)
Q Consensus 88 ~~~Pn~~H~~L~~L~~~g~~~~viTQNIDgLh~kAG~~~~~v~el--HGsl~~~~C~~C~~~~~~ 150 (258)
...+...++.|..|++.|.+..+-..|-- ..++. ++.-.++.|..||+..+.
T Consensus 42 ~is~~TVYR~L~~L~e~Glv~~~~~~~~~-----------~~y~~~~~~~h~HliC~~Cg~v~~~ 95 (131)
T 2o03_A 42 NIGLTTVYRTLQSMASSGLVDTLHTDTGE-----------SVYRRCSEHHHHHLVCRSCGSTIEV 95 (131)
T ss_dssp CCCHHHHHHHHHHHHTTTSEEEEECTTSC-----------EEEEECCSSSCEEEEETTTCCEEEE
T ss_pred CCCHhhHHHHHHHHHHCCCEEEEEeCCCc-----------eEEEeCCCCCCCEEEeCCCCCEEEE
Confidence 45666789999999999987665443311 22332 123467899999987654
No 108
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=21.24 E-value=30 Score=30.40 Aligned_cols=92 Identities=11% Similarity=0.134 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHH--hCCcEEEEeCCccCccCCCCC---CCCCC-CCccc----ccc------CC-CCccccccc-CCCC
Q psy8970 30 FDKKIKVLSEWID--KAKHVVLHTGAGISTSAGIPD---FRGPN-GVWTL----EKK------GI-KPKVNISFD-DAVP 91 (258)
Q Consensus 30 ~~~~l~~la~~i~--~a~~ivv~tGAGiS~~SGIPd---FR~~~-Glw~~----~~~------~~-~p~~~~~f~-~~~P 91 (258)
..++++++++.|. ++++| +++|.|-|..+|..- |.... |+-.. ..+ .. .......+. .-+-
T Consensus 9 ~~~~i~~~v~~i~~~~~~~I-~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T 87 (329)
T 3eua_A 9 VNREVQAFLQDLKGKTIDHV-FFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNT 87 (329)
T ss_dssp SCHHHHHHHHHHTTCCCCEE-EEEECTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHHCCTTCSTTEEEEEEESSSCC
T ss_pred HHHHHHHHHHHHHHCCCCEE-EEEEccHHHHHHHHHHHHHHHhcCCCeEEEEccHHHHhcCccCCCCCcEEEEEcCCCCC
Confidence 3567889999998 55655 788999998766311 11000 11100 000 00 111222222 2233
Q ss_pred CHHHHHHHHHHHcCCCcEEEeccCcchHhhc
Q psy8970 92 TVTHMAILELVNRGKVHYVVSQNIDGLHLRS 122 (258)
Q Consensus 92 n~~H~~L~~L~~~g~~~~viTQNIDgLh~kA 122 (258)
..+-.++....+.|-..-.||.|.++-..+.
T Consensus 88 ~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ 118 (329)
T 3eua_A 88 PETVKAAAFARGKGALTIAMTFKPESPLAQE 118 (329)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTSHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChHHHh
Confidence 3445566666667777778888888765543
No 109
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=21.13 E-value=83 Score=26.25 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 26 SKEDFDKKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 26 ~~~~~~~~l~~la~~i~~a~~ivv~tGAG 54 (258)
+++.++.-.++++++.+...++|++.|+|
T Consensus 28 ~~~~i~~~a~~I~~l~~~G~~vvlV~gGG 56 (240)
T 4a7w_A 28 DIHVLDHIAKEIKSLVENDIEVGIVIGGG 56 (240)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 34556666667777766677899999997
No 110
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=20.94 E-value=78 Score=26.46 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAG 54 (258)
++.+..-.+.++++.+...++|++.|+|
T Consensus 29 ~~~~~~~a~~I~~l~~~G~~vVlVhGgG 56 (252)
T 1z9d_A 29 IPTVQAIAKEIAEVHVSGVQIALVIGGG 56 (252)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECCC
Confidence 4455566666666666667899999987
No 111
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=20.77 E-value=45 Score=27.30 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHh-----CCcEEEEeCCccCccCC-----------CCCCCCCCC-CccccccCCCC-ccccccc-CCCCC
Q psy8970 32 KKIKVLSEWIDK-----AKHVVLHTGAGISTSAG-----------IPDFRGPNG-VWTLEKKGIKP-KVNISFD-DAVPT 92 (258)
Q Consensus 32 ~~l~~la~~i~~-----a~~ivv~tGAGiS~~SG-----------IPdFR~~~G-lw~~~~~~~~p-~~~~~f~-~~~Pn 92 (258)
+.+++++++|.+ +++| ++.|.|-|...+ +|.+--.++ .+.......++ ...+.+. .-+..
T Consensus 42 ~~i~~~~~~i~~~a~~~a~~I-~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~ 120 (220)
T 3etn_A 42 DAYEKAVELIVEQIHRKKGKL-VTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTR 120 (220)
T ss_dssp THHHHHHHHHHHHTTTTCCCE-EEECSHHHHHHHHHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSCCH
T ss_pred HHHHHHHHHHHhHhhccCCEE-EEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCCCH
Confidence 457888889988 6665 678999886543 222211111 11000000111 1122222 22333
Q ss_pred HHHHHHHHHHH--cCCCcEEEeccCcchHhh
Q psy8970 93 VTHMAILELVN--RGKVHYVVSQNIDGLHLR 121 (258)
Q Consensus 93 ~~H~~L~~L~~--~g~~~~viTQNIDgLh~k 121 (258)
..-.++..+.+ +|-..-.||.|-+.-..+
T Consensus 121 ~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~ 151 (220)
T 3etn_A 121 EIVELTQLAHNLNPGLKFIVITGNPDSPLAS 151 (220)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCTTSHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCChhHH
Confidence 44556666677 787778899988875443
No 112
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=20.72 E-value=1.4e+02 Score=22.09 Aligned_cols=32 Identities=34% Similarity=0.380 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCccC
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~S 59 (258)
+.+.+.++-+.+.+++.+.++|.+-||+|-++
T Consensus 65 ~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~ 96 (144)
T 3ezz_A 65 SWFMEAIEYIDAVKDCRGRVLVHSQAGISRSA 96 (144)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEEESSSSSHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCChhH
Confidence 44555555555566667899999999998653
No 113
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=20.56 E-value=53 Score=23.34 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=13.4
Q ss_pred CcEEEEeCCccCccCCCC
Q psy8970 45 KHVVLHTGAGISTSAGIP 62 (258)
Q Consensus 45 ~~ivv~tGAGiS~~SGIP 62 (258)
+.+.|+||-|.....|.+
T Consensus 43 ~~v~IIhGkG~hS~~g~~ 60 (96)
T 2d9i_A 43 PYLSVITGRGNHSQGGVA 60 (96)
T ss_dssp SEEEEECCCSGGGTTCTT
T ss_pred eEEEEEECcCCCCCCCcc
Confidence 469999999986555543
No 114
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}
Probab=20.51 E-value=95 Score=25.63 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeCCccCccCCC
Q psy8970 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (258)
Q Consensus 28 ~~~~~~l~~la~~i~~a~~ivv~tGAGiS~~SGI 61 (258)
.++.+.|.++.+.+.+..++||+||+|=.-.+|.
T Consensus 31 ~~~~~~L~~al~~~~~d~~~vvltg~g~~F~aG~ 64 (232)
T 3ot6_A 31 PDVIIAFNAALDQAEKDRAIVIVTGQPGILSGGY 64 (232)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECBTEEEECCB
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCccCCc
Confidence 3444445555555555568999999985555653
No 115
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=20.30 E-value=1.1e+02 Score=25.52 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHhCCcEEEEeCCc
Q psy8970 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAG 54 (258)
Q Consensus 27 ~~~~~~~l~~la~~i~~a~~ivv~tGAG 54 (258)
++.++.-.++++++.+....+|+++|+|
T Consensus 31 ~~~i~~la~~i~~l~~~G~~vviV~gGG 58 (243)
T 3ek6_A 31 PKVINRLAHEVIEAQQAGAQVALVIGGG 58 (243)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEECST
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3455555566666666667899999986
No 116
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=20.28 E-value=84 Score=29.57 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHhccCCEEEEEecCceeE------------EEEcCCCCCCCCc--ccEEEEe
Q psy8970 197 GDYNSSIADLSICLGKCLLSF------------LKCFFRKTKQNNN--TNLCGRV 237 (258)
Q Consensus 197 a~~~~~~~Dl~lvvGTSl~V~------------v~iN~~~t~~d~~--adl~i~~ 237 (258)
+.+.+++||++|++|+..... |.|+.++...+.. .++.|.+
T Consensus 268 ~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~ 322 (566)
T 1ozh_A 268 GDRLLQLADLVICIGYSPVEYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVG 322 (566)
T ss_dssp HHHHHHHCSEEEEESCCGGGSCGGGTCCSCSEEEEEESSCCCCBTTBCCSEEEES
T ss_pred HHHHHHhCCEEEEECCCCCcCCccccCCCCCcEEEEeCCHHHhCCCCCCCEEEEe
Confidence 345677899999999853211 6677776665543 4555543
Done!