RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8970
(258 letters)
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4)
which includes human sirtuin SIRT6, SIRT7, and several
bacterial homologs; and are members of the SIR2 family
of proteins, silent information regulator 2 (Sir2)
enzymes which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 206
Score = 216 bits (553), Expect = 3e-71
Identities = 81/171 (47%), Positives = 107/171 (62%), Gaps = 6/171 (3%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEK-KGIKPKVNISFDDAVPTVTHMAILELVN 103
KH+V+ TGAGISTSAGIPDFRGPNGVWTL + + + F A PT+THMA++EL
Sbjct: 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLPEDKGRRRFSWRFRRAEPTLTHMALVELER 60
Query: 104 RGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLN 163
G + +V+SQN+DGLHLRSGL R+ L+ELHGNM+++ C C ++VR + G K
Sbjct: 61 AGLLKFVISQNVDGLHLRSGLPREKLSELHGNMFIEVCKSCGPEYVRDDVVETRGDKETG 120
Query: 164 ISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCL 214
C C G L DTI+D+ LP ++ + ADL +CLG L
Sbjct: 121 RRCH-----ACGGILKDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSL 166
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 156 bits (396), Expect = 3e-47
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 26/184 (14%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKP-----------------KVNISFD 87
K +V+ TGAGIST +GIPDFR P G+W +
Sbjct: 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDPEELAFSPEAFRRDPELFWGFYRERRYPL 60
Query: 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQ 147
+A P H A+ EL +GK+ V++QN+DGLH R+G + + ELHG+++ +C KC ++
Sbjct: 61 NAQPNPAHRALAELERKGKLKRVITQNVDGLHQRAGSPK--VIELHGSLFRVRCTKCGKE 118
Query: 148 FVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLS 207
+ R + ++ + CP C G L ++ + +LP++ + + ADL
Sbjct: 119 YPRDELQADIDREEV-PRCP-----KCGGLLRPDVVFFGESLPEELDEAAEA-LAKADLL 171
Query: 208 ICLG 211
+ +G
Sbjct: 172 LVIG 175
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer. Also included in this
superfamily is a group of uncharacterized Sir2-like
proteins which lack certain key catalytic residues and
conserved zinc binding cysteines.
Length = 222
Score = 140 bits (354), Expect = 5e-41
Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 28/186 (15%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGPN-GVWTL----------EKKGIKPKVNISF------- 86
K VV+ TGAGIST +GIPDFRG G+WT E P++ F
Sbjct: 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLDPEELAFSPEAFRRDPELFWLFYKERRYT 60
Query: 87 -DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCE 145
DA P H A+ EL +GK+ +++QN+DGLH R+G R + ELHG++ +C C
Sbjct: 61 PLDAKPNPAHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCG 120
Query: 146 RQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIAD 205
+++ R + V ++ CP C G L ++D+ LP++ + AD
Sbjct: 121 KEYPR----DEVLEREKPPRCP-----KCGGLLRPDVVDFGEALPKEWFDRALEALLEAD 171
Query: 206 LSICLG 211
L + +G
Sbjct: 172 LVLVIG 177
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 109 bits (274), Expect = 6e-29
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 20/136 (14%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGI----------KPKV 82
++ +++ + +AK +V+ TGAGIS +GIPDFR +G+W+ + P++
Sbjct: 1 PLEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYDPEDLASPSGFRRDPEL 60
Query: 83 NISF--------DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 134
F A P H A+ EL ++GK+ +++QNIDGLH R+G K + ELHG
Sbjct: 61 VWDFYSERLRLLYLAQPNKAHYALAELEDKGKLLRIITQNIDGLHERAGS--KNVIELHG 118
Query: 135 NMYVDQCNKCERQFVR 150
++ +C+KC Q+
Sbjct: 119 SLKRVRCSKCGNQYYD 134
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 104 bits (263), Expect = 2e-27
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 25/137 (18%)
Query: 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT------------LEKKGIK 79
+I+ L+E +DKAK +V+ TGAGIS +GIPDFR NG+W +
Sbjct: 1 MRIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEHRPEDVASPEGFARD--- 57
Query: 80 PKVNISF--------DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAE 131
P++ F DA P H A+ EL GK+ V++QNIDGLH R+G S+ + E
Sbjct: 58 PELVWKFYNERRRQLLDAKPNAAHRALAELEKLGKLVTVITQNIDGLHERAG-SKN-VIE 115
Query: 132 LHGNMYVDQCNKCERQF 148
LHG++ +C KC + +
Sbjct: 116 LHGSLLRARCTKCGQTY 132
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 103 bits (259), Expect = 5e-27
Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 26/192 (13%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVW----TLEKKGIK-----PKVNISF----- 86
+ K++ V+ TGAGIST +GIPDFR P+G+W E I P+ F
Sbjct: 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYDPEEVASIDYFYRNPEEFWRFYKEII 60
Query: 87 ---DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNK 143
+A P H + EL +G + +++QNIDGLH R+G S+ + ELHG + C
Sbjct: 61 LGLLEAQPNKAHYFLAELEKQGIIKAIITQNIDGLHQRAG-SKNVI-ELHGTLQTAYCVN 118
Query: 144 CERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSI 203
C ++ + K R + C G + ++ + LPQ + +
Sbjct: 119 CGSKY------DLEEVKYAKKHEVPRCPK-CGGIIRPDVVLFGEPLPQALLREAIEAAKE 171
Query: 204 ADLSICLGKCLL 215
ADL I LG L+
Sbjct: 172 ADLFIVLGSSLV 183
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional.
Length = 244
Score = 102 bits (257), Expect = 2e-26
Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 34/200 (17%)
Query: 39 EWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT---------------------LEKKG 77
E +++++ V TGAGIST +GIPDFRGP G++ K+G
Sbjct: 6 ELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYPQNVFDIDFFYSHPEEFYRFAKEG 65
Query: 78 IKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMY 137
I P + +A P + H+ + +L +G + V++QNID LH ++G K + ELHGN+
Sbjct: 66 IFPML-----EAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQKAG--SKKVIELHGNVE 118
Query: 138 VDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMG 197
C +C +++ + + + ++ C C G + I+ + LPQ +
Sbjct: 119 EYYCVRCGKRYTVEDVIEKLEKSDVP-RCD-----DCSGLIRPNIVFFGEALPQDALREA 172
Query: 198 DYNSSIADLSICLGKCLLSF 217
SS A L I +G L+ +
Sbjct: 173 IRLSSKASLMIVMGSSLVVY 192
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs
from several gram positive bacterial species and
Fusobacteria; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 225
Score = 102 bits (256), Expect = 2e-26
Identities = 59/195 (30%), Positives = 85/195 (43%), Gaps = 36/195 (18%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKP---------------- 80
L + AK +V TGAG+ST++GIPD+R NG++ E P
Sbjct: 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYN-EIYKYSPEYLLSHDFLEREPEKF 59
Query: 81 ----KVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNM 136
K N+ F DA P + H + EL G V++QNIDGLH ++G K + E HG++
Sbjct: 60 YQFVKENLYFPDAKPNIIHQKMAELEKMGLKA-VITQNIDGLHQKAG--SKNVVEFHGSL 116
Query: 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINM 196
Y C C K+ K+ PY C G + I+ +E L + I
Sbjct: 117 YRIYCTVCG-----KTVDWEEYLKS-----PYHA--KCGGVIRPDIVLYEEMLNESVIEE 164
Query: 197 GDYNSSIADLSICLG 211
ADL + +G
Sbjct: 165 AIQAIEKADLLVIVG 179
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 90.0 bits (224), Expect = 2e-22
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 28/179 (15%)
Query: 52 GAGISTSAGIPDFRGPNGVWT-LEKKGI--------------KPKVNIS----FDDAVPT 92
GAGIST +GIPDFR +G++ L K+ + P NI+ A P
Sbjct: 1 GAGISTESGIPDFRSDDGLYAKLAKEELASPEAFFSNPYLVWDPFYNIARELLPGPAQPN 60
Query: 93 VTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKS 152
H I EL ++GK+ +++QNIDGLH R+G K + ELHG+ +C C +++ ++
Sbjct: 61 PAHYFIAELEDKGKLLRLITQNIDGLHERAGS--KKVVELHGSFAKARCVSCHKKYTGET 118
Query: 153 ATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLG 211
+ + C C G L I+ + NLP K + + ADL I +G
Sbjct: 119 LPERIDAAKVP-KCDK-----CGGLLKPDIVFFGENLPDKFFRAYE-DVEEADLLIVIG 170
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2)
which includes human sirtuin SIRT4 and several bacterial
homologs; and are members of the SIR2 family of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation. Sir2 proteins have been shown to regulate
gene silencing, DNA repair, metabolic enzymes, and life
span.
Length = 260
Score = 92.0 bits (229), Expect = 3e-22
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 28/123 (22%)
Query: 51 TGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNIS----------------------FDD 88
TGAGIST +GIPD+R G++ + +P + F
Sbjct: 15 TGAGISTESGIPDYRSEGGLY---SRTFRP-MTHQEFMRSPAARQRYWARSFVGWPRFSA 70
Query: 89 AVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQF 148
A P H A+ L G++H +++QN+DGLH ++G SR + ELHG+++ C C +
Sbjct: 71 AQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAG-SRN-VVELHGSLHRVVCLSCGFRT 128
Query: 149 VRK 151
R
Sbjct: 129 PRA 131
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and
prokaryotic group (class3) which includes human sirtuin
SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli
CobB; and are members of the SIR2 family of proteins,
silent information regulator 2 (Sir2) enzymes which
catalyze NAD+-dependent protein/histone deacetylation.
Sir2 proteins have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
CobB is a bacterial sirtuin that deacetylates acetyl-CoA
synthetase at an active site lysine to stimulate its
enzymatic activity. .
Length = 224
Score = 79.6 bits (197), Expect = 6e-18
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 19/122 (15%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGPNGVW---------TLEKKGIKPKVNISFDD------- 88
+ VV+ TGAGIS +GIP FR +G+W T E P++ F +
Sbjct: 1 RRVVVLTGAGISAESGIPTFRDADGLWARFDPEELATPEAFARDPELVWEFYNWRRRKAL 60
Query: 89 -AVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQ 147
A P H+A+ EL R +++QN+DGLH R+G SR + ELHG+++ +C+ C
Sbjct: 61 RAQPNPAHLALAELERRLPNVLLITQNVDGLHERAG-SRNVI-ELHGSLFRVRCSSCGYV 118
Query: 148 FV 149
Sbjct: 119 GE 120
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes
human sirtuins SIRT1-3 and yeast Hst1-4; and are members
of the SIR2 family of proteins, silent information
regulator 2 (Sir2) enzymes which catalyze NAD+-dependent
protein/histone deacetylation. Sir2 proteins have been
shown to regulate gene silencing, DNA repair, and life
span. The most-studied function, gene silencing,
involves the inactivation of chromosome domains
containing key regulatory genes by packaging them into a
specialized chromatin structure that is inaccessible to
DNA-binding proteins. The nuclear SIRT1 has been shown
to target the p53 tumor suppressor protein for
deacetylation to suppress DNA damage, and the
cytoplasmic SIRT2 homolog has been shown to target
alpha-tubulin for deacetylation for the maintenance of
cell integrity.
Length = 235
Score = 76.5 bits (189), Expect = 1e-16
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 36/196 (18%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGPN-GVWT-LEKKGI----------------KPKVNISF 86
K +V+ GAGISTSAGIPDFR P G++ L + + +P ++
Sbjct: 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANLARYNLPYPEAMFDISYFRKNPRPFYALAK 60
Query: 87 D----DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
+ P+V H I L ++G + +QNID L +G+ + E HG+ C
Sbjct: 61 ELYPGQFKPSVAHYFIKLLEDKGLLLRNYTQNIDTLERVAGVPDDRIIEAHGSFATAHCI 120
Query: 143 KCERQF----VRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGD 198
KC+ ++ +R+ N K CP C G + I+ + +LP + + +
Sbjct: 121 KCKHKYPGDWMREDIFNQEVPK-----CPR-----CGGLVKPDIVFFGESLPSRFFSHME 170
Query: 199 YNSSIADLSICLGKCL 214
+ ADL I +G L
Sbjct: 171 EDKEEADLLIVIGTSL 186
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional.
Length = 285
Score = 75.5 bits (186), Expect = 4e-16
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNIS----------- 85
L +++++ + + TGAGIST +GIPD+R NG W P +
Sbjct: 12 LQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKR-----SPPITYQAFMGSDAARRR 66
Query: 86 -----------FDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 134
F A P H A+ L G++ +V+QN+DGLH R+G SR + ELHG
Sbjct: 67 YWARSMVGWPVFGRAQPNAAHHALARLGAAGRIERLVTQNVDGLHQRAG-SRDVI-ELHG 124
Query: 135 NMYVDQCNKCERQFVRKS 152
+ +C C + R
Sbjct: 125 RLDGVRCMGCGARHPRAE 142
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein;
Provisional.
Length = 271
Score = 71.1 bits (174), Expect = 2e-14
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 19/125 (15%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPN----------------GVWTLEKKGIKP 80
L++ I K K+VV TG+G S + IP FRGP+ G W +K +
Sbjct: 21 LADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYDPKIYGTIWGFWKYPEKIWEV 80
Query: 81 KVNISFD-DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 139
+IS D + H+A+ L + G + +VV+QN+DGLH SG ++ + LHG+++
Sbjct: 81 IRDISSDYEIELNPGHVALSTLESLGYLKFVVTQNVDGLHEESGNTK--VIPLHGSVFEA 138
Query: 140 QCNKC 144
+C C
Sbjct: 139 RCCTC 143
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 63.3 bits (154), Expect = 7e-12
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 39/195 (20%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT---LEKKG------IKPKV--------- 82
+ + + + TGAGIS +GI FR NG+W +E P +
Sbjct: 1 MKACRCITILTGAGISAESGISTFRDGNGLWENHRVEDVATPDAFLRNPALVQRFYNERR 60
Query: 83 -NISFDDAVPTVTHMAILELVN--RGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 139
+ P H A+ +L RG VV+QN+D LH R+G S L +HG +
Sbjct: 61 RALLSSSVKPNKAHFALAKLEREYRGGKVVVVTQNVDNLHERAG-STHVL-HMHGELLKV 118
Query: 140 QCNKCERQFV-RKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGD 198
+C F + + + C G C GTL I+ W +P + M +
Sbjct: 119 RCTATGHVFDWTEDVVHGSSR------CKCCG---CVGTLRPHIV-WFGEMP---LYMDE 165
Query: 199 YNSSI--ADLSICLG 211
S + DL + +G
Sbjct: 166 IESVMSKTDLFVAVG 180
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 58.3 bits (141), Expect = 7e-10
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 24/121 (19%)
Query: 52 GAGISTSAGIPDFRGPN-GVWT-LEKKGI--------------KPKV--NISFDDAV--- 90
GAGIS +AGIPDFR P+ G++ L K + KP+V +I+ + +
Sbjct: 37 GAGISVAAGIPDFRSPHTGIYAKLGKYNLNSPTDAFSLTLLREKPEVFYSIAREMDLWPG 96
Query: 91 ---PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQ 147
PT H I L + G++ +QNIDGL +G+ L E HG+ C +C
Sbjct: 97 HFQPTAVHHFIRLLADEGRLLRCCTQNIDGLERAAGVPPSLLVEAHGSFSAASCIECHTP 156
Query: 148 F 148
+
Sbjct: 157 Y 157
>gnl|CDD|238697 cd01406, SIR2-like, Sir2-like: Prokaryotic group of
uncharacterized Sir2-like proteins which lack certain
key catalytic residues and conserved zinc binding
cysteines; and are members of the SIR2 superfamily of
proteins, silent information regulator 2 (Sir2) enzymes
which catalyze NAD+-dependent protein/histone
deacetylation.
Length = 242
Score = 33.5 bits (77), Expect = 0.068
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 45 KHVVLHTGAGISTSAGIPDFRG 66
VV+ GAG+S S+G+PD++
Sbjct: 1 GRVVIFVGAGVSVSSGLPDWKT 22
>gnl|CDD|200581 cd10958, CE4_NodB_like_2, Catalytic NodB homology domain of
uncharacterized chitin deacetylases and hypothetical
proteins. This family includes some uncharacterized
chitin deacetylases and hypothetical proteins, mainly
from eukaryotes. Although their biological function is
unknown, members in this family show high sequence
homology to the catalytic NodB homology domain of
Colletotrichum lindemuthianum chitin deacetylase
(endo-chitin de-N-acetylase, ClCDA, EC 3.5.1.41), which
catalyzes the hydrolysis of N-acetamido groups of
N-acetyl-D-glucosamine residues in chitin, converting it
to chitosan in fungal cell walls. Like ClCDA, this
family is a member the carbohydrate esterase 4 (CE4)
superfamily.
Length = 190
Score = 30.7 bits (70), Expect = 0.49
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 16/118 (13%)
Query: 80 PKVNISFDDAVPTVTHMAILELVNRGKVH---YVVSQNIDGLHLRSGLSRKYLAELH--G 134
V ++ DDA P+ + IL+L+ V +V+ + R + + + E H G
Sbjct: 1 KVVALTIDDA-PSPSTEEILDLLEEHNVRATFFVIGSHAPR---REEVLSRIVEEGHELG 56
Query: 135 N-MYVDQC------NKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDW 185
N D+ + E Q + S N IS + FRP G +LD
Sbjct: 57 NHGMHDEPSASLSLAEFETQLLECERLISRLYPNRGISQKTKWFRPGSGFFTRRMLDT 114
>gnl|CDD|184818 PRK14779, PRK14779, lipoprotein signal peptidase; Provisional.
Length = 159
Score = 29.7 bits (67), Expect = 0.81
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 193 DINMGDYN---SSIADLSICLGKCLLSFLKCFFRKTKQNN 229
DI +GD++ +IAD SI +G L + FF+K K+ N
Sbjct: 120 DIYIGDFHWPAFNIADASISIGIALFILYEHFFKKRKKTN 159
>gnl|CDD|232813 TIGR00077, lspA, lipoprotein signal peptidase. Alternate name:
lipoprotein signal peptidase [Protein fate, Protein and
peptide secretion and trafficking].
Length = 166
Score = 29.6 bits (67), Expect = 0.99
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 193 DINMGDYNSSI---ADLSICLGKCLLSFLKCFFRKTKQNN 229
D G+Y+ I AD SIC+G LL L FF K K+
Sbjct: 127 DFYFGNYHFPIFNFADSSICIGVILL-LLYFFFPKRKKKK 165
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase.
Length = 347
Score = 29.7 bits (66), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 127 KYLAELHGNMYVDQCNKCERQFVRKSATN 155
K ++EL + + DQC +CER+ V S N
Sbjct: 263 KVISELGDSAFEDQCGRCEREAVNVSLAN 291
>gnl|CDD|216550 pfam01522, Polysacc_deac_1, Polysaccharide deacetylase. This
domain is found in polysaccharide deacetylase. This
family of polysaccharide deacetylases includes NodB
(nodulation protein B from Rhizobium) which is a
chitooligosaccharide deacetylase. It also includes
chitin deacetylase from yeast, and endoxylanases which
hydrolyses glucosidic bonds in xylan.
Length = 124
Score = 28.0 bits (63), Expect = 2.2
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 79 KPKVNISFDDAVPTVTHMAILELVNRGKVH---YVVSQNID 116
K V ++FDD P T IL+++ + V +V+ N +
Sbjct: 6 KKSVALTFDDGPPDNT-PRILDVLKKYGVKATFFVIGGNAE 45
>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer
membrane].
Length = 406
Score = 28.8 bits (65), Expect = 2.6
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 67 PNGVWTLEKKGIKPKVNISFDDAVP 91
P+G E KGI P + + D P
Sbjct: 350 PSGRSI-EGKGITPDIEVPQADDEP 373
>gnl|CDD|216641 pfam01673, Herpes_env, Herpesvirus putative major envelope
glycoprotein. This family consists of probable major
envelope glycoproteins from members of the herpesviridae
including herpes simplex virus, human cytomegalovirus
and varicella-zoster virus. Members of the herpesviridae
have a dsDNA genome and do not have a RNA stage during
there replication.
Length = 483
Score = 28.8 bits (65), Expect = 3.0
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 191 QKDINMGDYNSSIADLSICLGKCLLSFLKCFFRKTKQNNNTN----LC 234
+ + + A+ G CLLS L K N T+ LC
Sbjct: 274 HRADLAARFFTPPAEPDTSQGPCLLSPLPHLKTK----NRTSSVCLLC 317
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter. [Transport and binding
proteins, Other].
Length = 953
Score = 28.1 bits (63), Expect = 5.0
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 12/51 (23%)
Query: 61 IPDFRGPNGVWTL-------EKKGIKPKVNISFD-----DAVPTVTHMAIL 99
IP GP G + GI NIS D A+P T +AIL
Sbjct: 272 IPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAIL 322
>gnl|CDD|188643 cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate
aldolases (FSA) found in bacteria and archaea.
Transaldolase-like fructose-6-phosphate aldolases (FSA)
found in bacteria and archaea, which are member of the
MipB/TalC subfamily of class I aldolases. FSA catalyze
an aldol cleavage of fructose 6-phosphate and do not
utilize fructose, fructose 1-phosphate, fructose
1,6-phosphate, or dihydroxyacetone phosphate. The
enzymes belong to the transaldolase family that serves
in transfer reactions in the pentose phosphate cycle,
and are more distantly related to fructose
1,6-bisphosphate aldolase.
Length = 211
Score = 27.5 bits (62), Expect = 5.0
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 98 ILELVNRGKVHY-VVSQNIDGLHLRSGLSRKYLAELHGNMYV 138
I E+++ G V VVS + +G+ + + LA L GN+ V
Sbjct: 46 ICEIID-GPVSAQVVSTDAEGM-VAEA---RKLASLGGNVVV 82
>gnl|CDD|183703 PRK12724, PRK12724, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 432
Score = 28.0 bits (62), Expect = 5.5
Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 11/126 (8%)
Query: 17 KLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRG-------PNG 69
++G+ E S+E ++K++ L E + + + + T + +
Sbjct: 53 QIGIPEKQASREKIERKLQDLKELLKQKSYTEPERKKTLQTLKPLSERLEEKESAIYEIE 112
Query: 70 VWTLEKKGIKPK--VNISFDDAVPTVTHMAILE-LVNRGKVHYVVSQNIDGLHLRSGLSR 126
+ LE+ +P+ V +SF+ + E + R + + + + L +R G+S+
Sbjct: 113 SFELEEVITEPERPVGLSFEKELFEKNSFLESETTIVRKEKDSPLQRLGERL-VREGMSQ 171
Query: 127 KYLAEL 132
Y+ E+
Sbjct: 172 SYVEEM 177
>gnl|CDD|115108 pfam06431, Polyoma_lg_T_C, Polyomavirus large T antigen C-terminus.
Length = 417
Score = 27.6 bits (61), Expect = 6.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 171 FRPCR---GTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLGKCLLSFLK 219
FRP ++ I++W+ L K+I+M Y S ++ +G +L +L+
Sbjct: 318 FRPVADFAQSIQSRIVEWKERL-DKEISM--YTFSKMKFNVAMGIGILDWLR 366
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 27.9 bits (63), Expect = 7.1
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGI 78
LAE + D D K L E + + ++L+ D G +G+
Sbjct: 318 ALAEHYGF--DLDTPWKDLPE---EQQDIILYGSGDEVIPFYFNDRGGTKKRTHKPFEGV 372
Query: 79 KPKVN 83
P +
Sbjct: 373 IPNLE 377
>gnl|CDD|223670 COG0597, LspA, Lipoprotein signal peptidase [Cell envelope
biogenesis, outer membrane / Intracellular trafficking
and secretion].
Length = 167
Score = 26.8 bits (60), Expect = 9.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 193 DINMGDYNSSI---ADLSICLGKCLLSFLKCFFRKTKQNNNTN 232
D + G+++ I AD+ I +G LL L F K K+ +
Sbjct: 126 DFHYGNWHFPIFNLADVFISVGVILL-VLDSFLSKKKKKKKKD 167
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,679,869
Number of extensions: 1150291
Number of successful extensions: 1113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1088
Number of HSP's successfully gapped: 37
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)