RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8970
(258 letters)
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 276 bits (707), Expect = 1e-92
Identities = 112/213 (52%), Positives = 151/213 (70%), Gaps = 3/213 (1%)
Query: 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
S NYA GLSPY +KGK GL E FD E+ ++K+ L+ + ++ VV HTGAGIST++GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLR 121
PDFRGP+GVWT+E++G+ PK + +F+ A PT THMA+++L G + ++VSQN+DGLH+R
Sbjct: 62 PDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVR 121
Query: 122 SGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY---RGFRPCRGTL 178
SG R LAELHGNM+V++C KC+ Q+VR + ++G K C RG R CRG L
Sbjct: 122 SGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGEL 181
Query: 179 HDTILDWEHNLPQKDINMGDYNSSIADLSICLG 211
DTILDWE +LP +D+ + D S ADLSI LG
Sbjct: 182 RDTILDWEDSLPDRDLALADEASRNADLSITLG 214
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 274 bits (703), Expect = 1e-92
Identities = 112/213 (52%), Positives = 151/213 (70%), Gaps = 3/213 (1%)
Query: 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
S NYA GLSPY +KGK GL E FD E+ ++K+ L+ + ++ VV HTGAGIST++GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLR 121
PDFRGP+GVWT+E++G+ PK + +F+ A PT THMA+++L G + ++VSQN+DGLH+R
Sbjct: 62 PDFRGPHGVWTMEERGLAPKFDTTFESARPTQTHMALVQLERVGLLRFLVSQNVDGLHVR 121
Query: 122 SGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY---RGFRPCRGTL 178
SG R LAELHGNM+V++C KC+ Q+VR + ++G K C RG R CRG L
Sbjct: 122 SGFPRDKLAELHGNMFVEECAKCKTQYVRDTVVGTMGLKATGRLCTVAKARGLRACRGEL 181
Query: 179 HDTILDWEHNLPQKDINMGDYNSSIADLSICLG 211
DTILDWE +LP +D+ + D S ADLSI LG
Sbjct: 182 RDTILDWEDSLPDRDLALADEASRNADLSITLG 214
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 159 bits (406), Expect = 1e-48
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 34/200 (17%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWT-------------------- 72
K+K + +++++ V TGAGIST +GIPDFRGPNG++
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 73 -LEKKGIKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAE 131
K+GI P A P + H+ + +L +G + V++QNID LH R+G S+K + E
Sbjct: 62 RFAKEGIFP-----MLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAG-SKK-VIE 114
Query: 132 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQ 191
LHGN+ C +CE+++ + + ++ + C C + I+ + NLPQ
Sbjct: 115 LHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPL-CDD-----CNSLIRPNIVFFGENLPQ 168
Query: 192 KDINMGDYNSSIADLSICLG 211
+ SS A L I LG
Sbjct: 169 DALREAIGLSSRASLMIVLG 188
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 132 bits (333), Expect = 8e-37
Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 52/236 (22%)
Query: 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISF 86
+ I + + A+ +++ TGAG+STS GIPDFR G ++ K F
Sbjct: 29 RLSNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHLGLDDPQDVF 88
Query: 87 D---------------------DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLS 125
+ + + + H I L +GK+ +QNID L +G+S
Sbjct: 89 NYNIFMHDPSVFYNIANMVLPPEKIYSPLHSFIKMLQMKGKLLRNYTQNIDNLESYAGIS 148
Query: 126 RKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY----------------- 168
L + HG+ C C + N + L + CPY
Sbjct: 149 TDKLVQCHGSFATATCVTCHWNLPGERIFNKIRNLELPL-CPYCYKKRREYFPEGYNNKV 207
Query: 169 --------RGFRP-----CRGTLHDTILDWEHNLPQKDINMGDYNSSIADLSICLG 211
RP G L I + LP K + DL IC+G
Sbjct: 208 GVAASQGSMSERPPYILNSYGVLKPDITFFGEALPNKFHKSIREDILECDLLICIG 263
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 130 bits (329), Expect = 9e-37
Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 44/220 (20%)
Query: 31 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWT-LEKKGI-------- 78
+ ++ ++ + + V+ GAGISTS GIPDFR P G++ L + +
Sbjct: 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFD 64
Query: 79 ------KPKV------NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSR 126
P + + P+ H + ++ + V +QNID L ++G+
Sbjct: 65 VDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKD 124
Query: 127 KYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNI--SCPYRGFRPCRGTLHDTILD 184
+ E HG+ C C + + + + + + + C C + I+
Sbjct: 125 DLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD-----VCGELVKPAIVF 179
Query: 185 WEHNLPQK-------------DINMGDYNSSIADLSICLG 211
+ +LP + L I +G
Sbjct: 180 FGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVG 219
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 124 bits (313), Expect = 2e-34
Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 31/210 (14%)
Query: 26 SKEDFDKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWT-LEKKGI--- 78
+ + ++ ++E I + VV+ GAGIST +GIPDFR P +G+++ L++ +
Sbjct: 3 ASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYP 62
Query: 79 -----------KPKV------NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLR 121
PK + + P VTH + L ++G + + +QNIDGL
Sbjct: 63 EAIFELPFFFHNPKPFFTLAKELYPGNYKPNVTHYFLRLLHDKGLLLRLYTQNIDGLERV 122
Query: 122 SGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDT 181
SG+ L E HG C C+R F + V + CP C G +
Sbjct: 123 SGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRV-PRCPV-----CTGVVKPD 176
Query: 182 ILDWEHNLPQKDINMGDYNSSIADLSICLG 211
I+ + LPQ+ + + +ADL + LG
Sbjct: 177 IVFFGEPLPQRFLLHVV-DFPMADLLLILG 205
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 123 bits (310), Expect = 2e-33
Identities = 43/232 (18%), Positives = 82/232 (35%), Gaps = 44/232 (18%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWT-LE 74
G+A S + ++ ++ + + V+ GAGISTS GIPDFR P G++ L
Sbjct: 1 GMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLA 60
Query: 75 KKGI--------------KPKV------NISFDDAVPTVTHMAILELVNRGKVHYVVSQN 114
+ + P + + P+ H + ++ + V +QN
Sbjct: 61 RLKLPYPEAVFDVDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQN 120
Query: 115 IDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNI--SCPYRGFR 172
ID L ++G+ + E HG+ C C + + + + + + + C
Sbjct: 121 IDTLERQAGVKDDLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCD----- 175
Query: 173 PCRGTLHDTILDWEHNLPQK-------------DINMGDYNSSIADLSICLG 211
C + I+ + +LP + L I +G
Sbjct: 176 VCGELVKPAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVG 227
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 121 bits (306), Expect = 2e-33
Identities = 52/217 (23%), Positives = 86/217 (39%), Gaps = 36/217 (16%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKG 77
L +F K+ ++ L++ I K KHVV TG+G S + IP FRG N +W+
Sbjct: 20 NLMISFLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWS----K 75
Query: 78 IKPKVNISFD--------------------DAVPTVTHMAILELVNRGKVHYVVSQNIDG 117
P++ + + H+A+ L + G + VV+QN+DG
Sbjct: 76 YDPRIYGTIWGFWKYPEKIWEVIRDISSDYEIEINNGHVALSTLESLGYLKSVVTQNVDG 135
Query: 118 LHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT 177
LH SG + K + LHGN++ C C + ++ P PC G
Sbjct: 136 LHEASG-NTK-VISLHGNVFEAVCCTCNKIVKLNKIMLQKTSHFMHQLPPE---CPCGGI 190
Query: 178 L-HDTILDW--EHNLPQKDINMGDYNSSIADLSICLG 211
+ I E + + + + DL + +G
Sbjct: 191 FKPNII--LFGE-VVSSDLLKEAEEEIAKCDLLLVIG 224
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 118 bits (298), Expect = 2e-32
Identities = 49/138 (35%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFD--- 87
+ +I+ +E + K+KH V+ TGAGIS +GIP FRG +G+W + P+ S
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLW----RKYDPEEVASISGFK 57
Query: 88 -----------------DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLA 130
A P H AI EL G V V++QNID LH R+G SR+ +
Sbjct: 58 RNPRAFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAG-SRR-VL 115
Query: 131 ELHGNMYVDQCNKCERQF 148
ELHG+M C C +
Sbjct: 116 ELHGSMDKLDCLDCHETY 133
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 113 bits (286), Expect = 8e-31
Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 27/133 (20%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFD--------- 87
L + I ++K++V TGAG+S +GIP FRG +G+W +P+ +
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWN----RYRPEELANPQAFAKDPEKV 60
Query: 88 ------------DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGN 135
+A P H A EL G + +++QN+D LH R+G SR + LHG+
Sbjct: 61 WKWYAWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG-SRN-VIHLHGS 118
Query: 136 MYVDQCNKCERQF 148
+ V +C C F
Sbjct: 119 LRVVRCTSCNNSF 131
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 107 bits (269), Expect = 5e-28
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 31/143 (21%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFD----- 87
+ ++ KAKH+V+ +GAG+S +G+P FRG G W + + + +
Sbjct: 10 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYW----RKWQAQDLATPLAFAHN 65
Query: 88 ----------------DAVPTVTHMAILEL----VNRGKVHYVVSQNIDGLHLRSGLSRK 127
P H AI E +G+ V++QNID LH ++G ++
Sbjct: 66 PSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAG-TKN 124
Query: 128 YLAELHGNMYVDQCNKCERQFVR 150
L E+HG+++ +C C
Sbjct: 125 -LLEIHGSLFKTRCTSCGVVAEN 146
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 103 bits (259), Expect = 2e-26
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 30/206 (14%)
Query: 31 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPK----VN 83
+ ++ ++ ++ ++ + V+ GAGISTSAGIPDFR P G++ +K P
Sbjct: 28 ELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFE 87
Query: 84 ISF-----------------DDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSR 126
IS+ PT+ H + L ++G + +QNID L +GL +
Sbjct: 88 ISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQ 147
Query: 127 KYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTL-HDTILDW 185
+ L E HG Y C + + + + +K + P C+ + D +
Sbjct: 148 EDLVEAHGTFYTSHCVSASCR--HEYPLSWMKEKIFSEVTPKC--EDCQSLVKPDIVFFG 203
Query: 186 EHNLPQKDINMGDYNSSIADLSICLG 211
E +LP + + + DL + +G
Sbjct: 204 E-SLPARFFSCMQSDFLKVDLLLVMG 228
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 98.8 bits (247), Expect = 3e-25
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 30/128 (23%)
Query: 45 KHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKP-----------------------K 81
V++ TGAGIS +GI FR +G+W + +
Sbjct: 2 PRVLVLTGAGISAESGIRTFRAADGLWE----EHRVEDVATPEGFDRDPELVQAFYNARR 57
Query: 82 VNISFDDAVPTVTHMAILELVNR-GKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQ 140
+ + P H+A+ +L + G +V+QNID LH R+G + + +HG + +
Sbjct: 58 RQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG-NTN-VIHMHGELLKVR 115
Query: 141 CNKCERQF 148
C++ +
Sbjct: 116 CSQSGQVL 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 2e-08
Identities = 53/242 (21%), Positives = 84/242 (34%), Gaps = 67/242 (27%)
Query: 3 CNYA-----EGLSPYE----NKGKLG----------LAETFDSKEDF----DKKIKVLSE 39
+Y G +P E KG G +AET DS E F K I VL
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET-DSWESFFVSVRKAITVLF- 304
Query: 40 WI-----DKAKHVVLHTGA---GISTSAGIPDF----RGPNGVWTLEKKGIKPKVNISFD 87
+I + + L + + G+P L ++ ++ VN +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN------LTQEQVQDYVN-KTN 357
Query: 88 DAVPTVTHMAILELVNRGKVHYVVSQNIDGLH-LRSGLSRKYLAELHGNMYVDQCNKCER 146
+P + I LVN G + VVS L+ L L RK A +DQ
Sbjct: 358 SHLPAGKQVEI-SLVN-GAKNLVVSGPPQSLYGLNLTL-RKAKAPSG----LDQSRIPFS 410
Query: 147 QFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIADL 206
+ RK + L ++ P+ H +L +L KD+ + + + D+
Sbjct: 411 E--RKLK---FSNRFLPVASPF----------HSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 207 SI 208
I
Sbjct: 456 QI 457
Score = 46.6 bits (110), Expect = 5e-06
Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 77/204 (37%)
Query: 6 AEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 65
+G EN + F++ D K + + + I++ +++ FR
Sbjct: 1679 EKGKRIRENYSAM----IFETIVDGKLKTEKIFKEINE------------HSTSYT--FR 1720
Query: 66 GPNGV-----WT--------------LEKKGIKPKVN-------------------ISFD 87
G+ +T L+ KG+ P +S +
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 88 DAVPTVTHMAILELVN-RGK-VHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCE 145
V E+V RG + V ++ G RS +A G + +
Sbjct: 1781 SLV---------EVVFYRGMTMQVAVPRDELG---RSNYGM--IAINPGRVAASFSQEAL 1826
Query: 146 RQFVRKSATNSVGQK----NLNIS 165
+ V + + G N N+
Sbjct: 1827 QYVVERVGKRT-GWLVEIVNYNVE 1849
Score = 33.1 bits (75), Expect = 0.088
Identities = 49/299 (16%), Positives = 78/299 (26%), Gaps = 115/299 (38%)
Query: 20 LAETFDS----KEDF-DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLE 74
L + + + D + LSE I G+ + W LE
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-------NILE----W-LE 220
Query: 75 KKGIKPKVN------ISFDDAVP--TVTHMAILELVNRGKVHYVVSQNIDGLH---LR-- 121
P + IS P V +A HYVV+ + G LR
Sbjct: 221 NPSNTPDKDYLLSIPISC----PLIGVIQLA----------HYVVTAKLLGFTPGELRSY 266
Query: 122 -SGLS-------------------------RKYLAEL--HGNMYVDQCNKCERQF----- 148
G + RK + L G +C +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG-------VRCYEAYPNTSL 319
Query: 149 ----VRKSATNSVGQKN--LNISCPYRGFRPCRGTLHDTILDWEHNLPQ-KDINMGDYNS 201
+ S N+ G + L+I + + D + +LP K + + N
Sbjct: 320 PPSILEDSLENNEGVPSPMLSI----SNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNG 373
Query: 202 SIADLSICLG--KCLLSFLKCFFRKTKQNNNTNLCGRVVKSTDSTRRCRVRIPARAEIF 258
A + G + L N L R K+ + R+ R F
Sbjct: 374 --AKNLVVSGPPQSLYGL------------NLTL--RKAKAPSGLDQSRIPFSERKLKF 416
Score = 29.6 bits (66), Expect = 1.3
Identities = 44/223 (19%), Positives = 74/223 (33%), Gaps = 51/223 (22%)
Query: 7 EGLSPYENKGK-LGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGI-STSAGIPDF 64
E +P E GK LG + + +VL+ + + ++ L G I + +A +
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-GNDIHALAAKLLQE 111
Query: 65 RGPNGVWTLEKKG--IKP--KVNISFDDAVPTVTHMAILELVNRGKVH-YVV--SQNIDG 117
TL K IK I ++ A+ V G + Q
Sbjct: 112 NDT----TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ---- 163
Query: 118 LHLRSGLSRKYLAELHG--NMYVDQCNKCERQFVRKSAT--NSVGQKNLNISCPY-RGFR 172
G + Y EL Y + ++ SA + + + L+ + +G
Sbjct: 164 -----GNTDDYFEELRDLYQTY----HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL- 213
Query: 173 PCRGTLHDTILDWEHNLPQK--DINMGDYNSSIADLS---ICL 210
+ IL+W N P D DY SI +S I +
Sbjct: 214 -------N-ILEWLEN-PSNTPDK---DYLLSIP-ISCPLIGV 243
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.004
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 74 EKKGIKPKVNISF----DDAVPTVTHMAILE 100
EK+ +K K+ S DD+ P + A +E
Sbjct: 18 EKQALK-KLQASLKLYADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.026
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 15/80 (18%)
Query: 67 PNGVWTLEKKGIKPKV------NISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHL 120
P I + ++ D + V + LV + +S I ++L
Sbjct: 382 PPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYL 433
Query: 121 RSGLSRKYLAELHGNMYVDQ 140
+ + LH VD
Sbjct: 434 ELKVKLENEYALH-RSIVDH 452
Score = 34.8 bits (79), Expect = 0.029
Identities = 41/257 (15%), Positives = 77/257 (29%), Gaps = 81/257 (31%)
Query: 4 NYAEGLSPY--ENKGKLGLAETFDSKED--------FDK-------KIKVLSEWI---DK 43
NY +SP E + + + + D F K L + +
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 44 AKHVVLH--TGAGISTSAG--IPDFR----GPNGV-WTLEKKGIKPKVNISFDDAVPTVT 94
AK+V++ G+G + A ++ + W +N+ + +
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW----------LNLKNCN-----S 194
Query: 95 HMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCNKCERQFVRKSAT 154
+LE++ K+ Y + N RS S +H + R K
Sbjct: 195 PETVLEMLQ--KLLYQIDPN---WTSRSDHSSNIKLRIH-----SIQAELRRLLKSKPYE 244
Query: 155 NS------VGQKN----LNISCPYRGFRPCRGTLHDT----ILDWEHNLPQKDINMGDYN 200
N V N+SC L T + D+ I++ ++
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCK---------ILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 201 SSIAD---LSICLGKCL 214
++ S+ L K L
Sbjct: 296 MTLTPDEVKSL-LLKYL 311
Score = 32.9 bits (74), Expect = 0.10
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 44/120 (36%)
Query: 77 GIKPK-VNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSR---KYLAEL 132
+ P +I PT+ L L+ + V ++ LH S + + + +
Sbjct: 379 SVFPPSAHI------PTIL----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 133 HGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQK 192
+Y++ K E ++ LH +I+D +N+P+
Sbjct: 429 PS-IYLELKVKLENEY----------------------------ALHRSIVD-HYNIPKT 458
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.41
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 23/68 (33%)
Query: 146 RQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIAD 205
R+ + K A N+ ++CP C+ + + GD
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPE-----CKVYPPKIVERFSE---------GDV------ 43
Query: 206 LSICLGKC 213
+C C
Sbjct: 44 --VC-ALC 48
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 26 SKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNI 84
++ED + ++ L E D + G + P G G+K
Sbjct: 242 TREDIEGVLRELGELPD-----LWDFAMGSWEGDSVTSRFAPEGRQEEFVAGLKKLTTK 295
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A
{Escherichia coli}
Length = 346
Score = 28.3 bits (64), Expect = 2.4
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 22/75 (29%)
Query: 55 ISTSAGIPDFRGPNGVWTLEKKGIKPKVNIS----------------FDDAVP---TVTH 95
IST AG + GP G +K + ++ S D+ P T +
Sbjct: 94 ISTKAGYDMWPGPYGSG-GSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASA 152
Query: 96 MAILELVNRGKVHYV 110
+A V GK YV
Sbjct: 153 LA--HAVQSGKALYV 165
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine
proteinase inhibitor, Pro inhibitor complex; HET: NAG
NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Length = 220
Score = 27.8 bits (61), Expect = 3.5
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 1/102 (0%)
Query: 79 KPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYV 138
KP+ +F+ + A + + +V + D ++ + ++ +
Sbjct: 61 KPQFQFTFNKQMQKSVPQANAYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKL 120
Query: 139 DQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGT-LH 179
E + + K N Y G P +G+ H
Sbjct: 121 LNEATHETSGATEFFASEFNTKGSNTLIEYMGPAPPKGSGPH 162
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 28.0 bits (63), Expect = 3.6
Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 22/75 (29%)
Query: 55 ISTSAGIPDFRGPNGVWTLEKKGIKPKVNIS----------------FDDAVP---TVTH 95
IST AG + GP G W +K + ++ S D P T+
Sbjct: 115 ISTKAGYTMWDGPYGDW-GSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETM-- 171
Query: 96 MAILELVNRGKVHYV 110
A+ LV GK YV
Sbjct: 172 KALDHLVRHGKALYV 186
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 4.7
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 8/28 (28%)
Query: 27 KEDFDKKIKVL--------SEWIDKAKH 46
+E+ K+++ L EW +KAK
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKK 118
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 27.6 bits (62), Expect = 5.7
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 10/43 (23%)
Query: 29 DFDKKIK-VLSEWIDKAKHVVL-----HT--GAGISTSAGIPD 63
DF+K+ K +L + +++ + +L HT GAG + S G D
Sbjct: 262 DFEKRFKALLKQ-LEQDTNSILFIDEIHTIIGAG-AASGGQVD 302
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann
fold, cytosol; 2.05A {Arabidopsis thaliana}
Length = 396
Score = 27.0 bits (60), Expect = 7.5
Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 46 HVV-LHTGAGISTSAGIPDFRGPNGVWTLEKKGIKPKVNISFDDAVP 91
V AG I DF G EK G + +FDD V
Sbjct: 236 DAVCPEKKAGDRCPTAIHDFEGDQ--TYSEKPGHTFALTTNFDDLVS 280
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,924,655
Number of extensions: 227022
Number of successful extensions: 675
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 36
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)