RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8970
(258 letters)
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 114 bits (287), Expect = 1e-31
Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 23/197 (11%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKG------------- 77
+ +I+ +E + K+KH V+ TGAGIS +GIP FRG +G+W
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEVASISGFKRNPR 61
Query: 78 ---IKPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHG 134
A P H AI EL G V V++QNID LH R+G R + ELHG
Sbjct: 62 AFWEFSMEMKDKLFAEPNPAHYAIAELERMGIVKAVITQNIDMLHQRAGSRR--VLELHG 119
Query: 135 NMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDI 194
+M C C + + + + ++ + LPQ+ +
Sbjct: 120 SMDKLDCLDCHETYDWSEFVEDFNKGEIPRCRKC-----GSYYVKPRVVLFGEPLPQRTL 174
Query: 195 NMGDYNSSIADLSICLG 211
+ D + +G
Sbjct: 175 FEAIEEAKHCDAFMVVG 191
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 107 bits (269), Expect = 6e-29
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKGI-------------- 78
K+K + +++++ V TGAGIST +GIPDFRGPNG++ + +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFFYSHPEEFY 61
Query: 79 --KPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNM 136
+ A P + H+ + +L +G + V++QNID LH R+G + + ELHGN+
Sbjct: 62 RFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKK--VIELHGNV 119
Query: 137 YVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINM 196
C +CE+++ + + ++ + C + I+ + NLPQ +
Sbjct: 120 EEYYCVRCEKKYTVEDVIKKLESSDVPLCD------DCNSLIRPNIVFFGENLPQDALRE 173
Query: 197 GDYNSSIADLSICLGK 212
SS A L I LG
Sbjct: 174 AIGLSSRASLMIVLGS 189
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 106 bits (266), Expect = 2e-28
Identities = 46/213 (21%), Positives = 75/213 (35%), Gaps = 36/213 (16%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKK---------------- 76
+ ++ KAKH+V+ +GAG+S +G+P FRG G W +
Sbjct: 4 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPLAFAHNPSRV 63
Query: 77 -GIKPKVNISFDDAVPTVTHMAILELVN----RGKVHYVVSQNIDGLHLRSGLSRKYLAE 131
P H AI E +G+ V++QNID LH ++G L E
Sbjct: 64 WEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN--LLE 121
Query: 132 LHGNMYVDQCNKCERQFVRKSATNSVGQKNLNI-------------SCPYRGFRPCRGTL 178
+HG+++ +C C + P C G L
Sbjct: 122 IHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLL 181
Query: 179 HDTILDWEHNLPQKDINMGDYNSSIADLSICLG 211
++ + NL + D + DL + +G
Sbjct: 182 RPHVVWFGENLDPAILEEVDRELAHCDLCLVVG 214
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 102 bits (255), Expect = 6e-27
Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 28/214 (13%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKKG-----------------IK 79
L + I ++K++V TGAG+S +GIP FRG +G+W +
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEELANPQAFAKDPEKVWKWY 64
Query: 80 PKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVD 139
+A P H A EL G + +++QN+D LH R+G + + LHG++ V
Sbjct: 65 AWRMEKVFNAQPNKAHQAFAELERLGVLKCLITQNVDDLHERAG--SRNVIHLHGSLRVV 122
Query: 140 QCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDINMGDY 199
+C C F +SA + C C L ++ LP ++
Sbjct: 123 RCTSCNNSFEVESA----PKIPPLPKCDK-----CGSLLRPGVVWAGEMLPPDVLDRAMR 173
Query: 200 NSSIADLSICLGKCLLSFLKCFFRKTKQNNNTNL 233
AD+ I G + + +
Sbjct: 174 EVERADVIIVAGTSAVVQPAASLPLIVKQRGGAI 207
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 94.6 bits (234), Expect = 1e-23
Identities = 37/210 (17%), Positives = 75/210 (35%), Gaps = 25/210 (11%)
Query: 31 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGP-NGVWTLEKKGIKPKVNISFD 87
+ ++ ++ + + V+ GAGISTS GIPDFR P G++ + P FD
Sbjct: 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHNLARLKLPYPEAVFD 64
Query: 88 ---------------------DAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSR 126
+ P+ H + ++ + V +QNID L ++G+
Sbjct: 65 VDFFQSDPLPFYTLAKELYPGNFRPSKFHYLLKLFQDKDVLKRVYTQNIDTLERQAGVKD 124
Query: 127 KYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPY-RGFRPCRGTLHDTILDW 185
+ E HG+ C C + + + + + + + + + D
Sbjct: 125 DLIIEAHGSFAHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPAIVFFGEDL 184
Query: 186 EHNLPQKDINMGDYNSSIADLSICLGKCLL 215
+ + +N ++ S + L
Sbjct: 185 PDSFSETWLNDSEWLREKITTSGKHPQQPL 214
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 93.3 bits (231), Expect = 6e-23
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 28/205 (13%)
Query: 31 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFRGPN-GVWTLEKKGIKPKVNISFD 87
+ ++ ++ ++ ++ + V+ GAGISTSAGIPDFR P+ G++ +K P F+
Sbjct: 28 ELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDNLEKYHLPYPEAIFE 87
Query: 88 DAV---------------------PTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSR 126
+ PT+ H + L ++G + +QNID L +GL +
Sbjct: 88 ISYFKKHPEPFFALAKELYPGQFKPTICHYFMRLLKDKGLLLRCYTQNIDTLERIAGLEQ 147
Query: 127 KYLAELHGNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWE 186
+ L E HG Y C + K S C+ + I+ +
Sbjct: 148 EDLVEAHGTFYTSHCVSASCRHEY----PLSWMKEKIFSEVTPKCEDCQSLVKPDIVFFG 203
Query: 187 HNLPQKDINMGDYNSSIADLSICLG 211
+LP + + + DL + +G
Sbjct: 204 ESLPARFFSCMQSDFLKVDLLLVMG 228
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 83.7 bits (206), Expect = 6e-20
Identities = 48/209 (22%), Positives = 82/209 (39%), Gaps = 37/209 (17%)
Query: 43 KAKHVVLHTGAGISTSAGIPDFRGPNGVWTLEKK-------------------GIKPKVN 83
K + +VL TGAGIS +GI FR +G+W + +
Sbjct: 1 KPRVLVL-TGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQ 59
Query: 84 ISFDDAVPTVTHMAILEL-VNRGKVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQCN 142
+ + P H+A+ +L G +V+QNID LH R+G + + +HG + +C+
Sbjct: 60 LQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTN--VIHMHGELLKVRCS 117
Query: 143 KCERQFVRKSATNSVGQKNLNISCPYRGF-RPCRGTLHDTILDWEHNLPQKDINMGDYNS 201
+ + T V ++ C + RP + E L +I M
Sbjct: 118 QSGQ---VLDWTGDVTPEDKCHCCQFPAPLRPH------VVWFGEMPLGMDEIYM---AL 165
Query: 202 SIADLSICLGKCLLSFL-KCFFRKTKQNN 229
S+AD+ I +G + F + K +
Sbjct: 166 SMADIFIAIGTSGHVYPAAGFVHEAKLHG 194
>d1ny1a_ c.6.2.3 (A:) Probable polysaccharide deacetylase PdaA
{Bacillus subtilis [TaxId: 1423]}
Length = 235
Score = 32.1 bits (72), Expect = 0.042
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 5/123 (4%)
Query: 79 KPKVNISFDDAVPTVTHMAILELVNRGKVHYVVSQNIDGLHLRSGLSRKYLAE-----LH 133
+ + ++FD+ +L+++ + +V + + L ++ E H
Sbjct: 42 EKTIYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNH 101
Query: 134 GNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKD 193
+ D K Q + + + + RP RG + +L L +
Sbjct: 102 SFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQT 161
Query: 194 INM 196
+
Sbjct: 162 VFW 164
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 158
Score = 29.6 bits (66), Expect = 0.22
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSA----------GIPDFRGPNGVWTLEKKGIKP 80
+K K ++ I KAK +L G ++ I + + G+
Sbjct: 6 LEKGKPVANMIKKAKRPLLIVGPDMTDEMFERVKKFVEKDITVVATGSAITRFIDAGLGE 65
Query: 81 KVN 83
KVN
Sbjct: 66 KVN 68
>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana
thomasiana) [TaxId: 29165]}
Length = 307
Score = 30.2 bits (67), Expect = 0.25
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 146 RQFVRKSATNSVGQKNLNISCP-YRGFRPCRGTLHDTILDWEHNLPQKDINMGDYNSSIA 204
++ + T S Q + Y F H+ I W + MG + +
Sbjct: 150 KEGPKGYDTWSFKQYIYALEQEDYCDFEVQFEIAHNAIHAWVGGTEEYS--MGHLHYASY 207
Query: 205 DLSICLGKCLLSFLKCFFRKTKQNNNT 231
D L L +++ ++
Sbjct: 208 DPVFILHHSNTDRLFALWQELQKFRGH 234
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 179
Score = 28.7 bits (63), Expect = 0.51
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 65
D I +++ I +AK+ + G S R
Sbjct: 7 DDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALR 41
>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
IRBP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 302
Score = 28.8 bits (64), Expect = 0.67
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 64 FRGPNGVWTLEKKGIKPKVNISFDDAVPTVTHMAILEL 101
F NG G+ P + D+A+ I+
Sbjct: 263 FIDSNG-DYWLGGGVVPDAIVLADEALDKA--KEIIAF 297
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 27.9 bits (61), Expect = 0.90
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 65
D+ + +L + ++ A + + G + + D
Sbjct: 6 DQDLDILVKALNSASNPAIVLGPDVDAANANADCV 40
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 27.8 bits (61), Expect = 1.3
Identities = 13/96 (13%), Positives = 25/96 (26%), Gaps = 12/96 (12%)
Query: 51 TGAGISTSAGIPDFRGPNGVWTLE-----KKGIKPKVNISFDDAVPTVTHMAILELVNRG 105
+G +S G+ D + +E + + D + L
Sbjct: 43 SGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRL------ 96
Query: 106 KVHYVVSQNIDGLHLRSGLSRKYLAELHGNMYVDQC 141
V + + + G L L K + G
Sbjct: 97 -VRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLAD 131
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 177
Score = 26.1 bits (56), Expect = 4.1
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 65
K + + +AKH VL GA S +P R
Sbjct: 7 KAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIR 40
>d2j13a1 c.6.2.3 (A:1-235) Putative polysaccharide deacetylase
BA0424 {Bacillus anthracis [TaxId: 1392]}
Length = 235
Score = 26.0 bits (56), Expect = 5.1
Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 5/124 (4%)
Query: 79 KPKVNISFDDAVPTVTHMAILELVNRGKVH---YVVSQNIDG--LHLRSGLSRKYLAELH 133
K + ++FD+ IL+++ KV +V I L ++ H
Sbjct: 44 KKDIYLTFDNGYENGYTGKILDVLKEKKVPATFFVTGHYIKTQKDLLLRMKDEGHIIGNH 103
Query: 134 GNMYVDQCNKCERQFVRKSATNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKD 193
+ D + + + + + K + + RP RG + L + +
Sbjct: 104 SWSHPDFTAVNDEKLREELTSVTEEIKKVTGQKEVKYVRPPRGVFSERTLALTKEMGYYN 163
Query: 194 INMG 197
+
Sbjct: 164 VFWS 167
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase
{Oxalobacter formigenes [TaxId: 847]}
Length = 175
Score = 25.7 bits (55), Expect = 5.4
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFR 65
+ I ++ I AK V+ G G + + + R
Sbjct: 6 EDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIR 40
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.2 bits (49), Expect = 5.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 140 QCNKCERQFVRKSA 153
+C CER FV KSA
Sbjct: 2 KCGLCERSFVEKSA 15
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 204
Score = 24.8 bits (53), Expect = 9.4
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 82 VNISFDDAVPTVTHMAILELVNRGKVH---YVVSQNIDGLH---LRSGLSRKYLAELHGN 135
V ++FDD V +L+ +++ V VV Q ++ +R ++ + H
Sbjct: 3 VALTFDDGPDNVLTARVLDKLDKYNVKATFMVVGQRVNDSTAAIIRRMVNSGHEIGNHSW 62
Query: 136 MYVDQCNKCERQFVRKSA-TNSVGQKNLNISCPYRGFRPCRGTLHDTILDWEHNLPQKDI 194
Y N Q + A TN+V QK + FRP T+ + + +
Sbjct: 63 SYSGMANMSPDQIRKSIADTNAVIQKYAGT--TPKFFRPPNLETSPTLFNNVDLVFVGGL 120
Query: 195 NMGDYNSS 202
D+ S
Sbjct: 121 TANDWIPS 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 973,167
Number of extensions: 44783
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 23
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)