BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8971
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCC|J Chain J, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|J Chain J, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|J Chain J, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 62
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+Y+LLF++TS+F LT+ VGA FER FD+ D ++E N+G
Sbjct: 9 LYSLLFRRTSTFALTIVVGALLFERAFDQGADAIYEHINEG 49
>pdb|1BGY|J Chain J, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|V Chain V, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|J Chain J, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|J Chain J, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|J Chain J, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|J Chain J, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|J Chain J, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex At 2.4 Angstrom
pdb|1NTZ|J Chain J, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex Bound With Ubiquinone
pdb|1NU1|J Chain J, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|J Chain J, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|W Chain W, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|J Chain J, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|W Chain W, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|J Chain J, Crystal Structure Analysis Of Bovine Bc1 With
Azoxystrobin
pdb|2A06|J Chain J, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|W Chain W, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|J Chain J, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|J Chain J, Crystal Structure Analysis Of Bovine Bc1 With
Stigmatellin A
pdb|1SQP|J Chain J, Crystal Structure Analysis Of Bovine Bc1 With
Myxothiazol
pdb|1SQQ|J Chain J, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|J Chain J, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|J Chain J, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|JJ Chain j, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 62
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+Y+LLF++TS+F LT+ VGA FER FD+ D ++E N+G
Sbjct: 9 LYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 49
>pdb|1QCR|J Chain J, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 59
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+Y+LLF++TS+F LT+ VGA FER FD D ++E N+G
Sbjct: 6 LYSLLFRRTSTFALTIVVGALFFERAFDNGADAIYEHINEG 46
>pdb|3CWB|J Chain J, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|W Chain W, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|J Chain J, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|W Chain W, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|J Chain J, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|W Chain W, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|J Chain J, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|W Chain W, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|J Chain J, Chicken Cytochrome Bc1 Complex With Zn++ And An
Iodinated Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|W Chain W, Chicken Cytochrome Bc1 Complex With Zn++ And An
Iodinated Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|J Chain J, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|W Chain W, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|J Chain J, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|W Chain W, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|J Chain J, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|W Chain W, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|J Chain J, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|W Chain W, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|J Chain J, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|W Chain W, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|J Chain J, Cytochrome Bc1 Complex From Chicken With Famoxadone
Bound
pdb|3L74|W Chain W, Cytochrome Bc1 Complex From Chicken With Famoxadone
Bound
pdb|3L75|J Chain J, Cytochrome Bc1 Complex From Chicken With Fenamidone
Bound
pdb|3L75|W Chain W, Cytochrome Bc1 Complex From Chicken With Fenamidone
Bound
pdb|3TGU|J Chain J, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
Moa Inhibitor Bound
pdb|3TGU|W Chain W, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
Moa Inhibitor Bound
Length = 61
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 2 ALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
AL Y+ LF++TS+F LTV +GA FER FD+ D ++E N+G
Sbjct: 1 ALLRQAYSALFRRTSTFALTVVLGAVLFERAFDQGADAIFEHLNEG 46
>pdb|1EZV|I Chain I, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KB9|I Chain I, Yeast Cytochrome Bc1 Complex
pdb|1P84|I Chain I, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
Length = 55
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+++Y FK+ + F+ T+ GAF F+ FD +E+HNKG
Sbjct: 1 SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 43
>pdb|1KYO|I Chain I, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|T Chain T, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 57
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+++Y FK+ + F+ T+ GAF F+ FD +E+HNKG
Sbjct: 3 SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 45
>pdb|2IBZ|I Chain I, Yeast Cytochrome Bc1 Complex With Stigmatellin
Length = 66
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+++Y FK+ + F+ T+ GAF F+ FD +E+HNKG
Sbjct: 4 SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 46
>pdb|3CX5|I Chain I, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core
Interface For Electron Transfer.
pdb|3CX5|T Chain T, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core
Interface For Electron Transfer.
pdb|3CXH|I Chain I, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome
C Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|T Chain T, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome
C Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 65
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+++Y FK+ + F+ T+ GAF F+ FD +E+HNKG
Sbjct: 3 SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 45
>pdb|1XSS|A Chain A, Semi-Rational Engineering Of A Green-Emitting Coral
Fluorescent Protein Into An Efficient Highlighter.
pdb|1XSS|B Chain B, Semi-Rational Engineering Of A Green-Emitting Coral
Fluorescent Protein Into An Efficient Highlighter
Length = 225
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLL 87
+V+E GVN P G V+ +K+ W +T+ D KG ++LL
Sbjct: 115 FVYEIRFDGVNFPANGPVMQRKTVKWEPSTEKMYVRDGVLKGDVNMALL 163
>pdb|2HQK|A Chain A, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
Derived From Clavularia
Length = 219
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLL 87
+++E H KG N P G V+ +K+ W+ +T+ D KG + LL
Sbjct: 111 FIYEIHLKGENFPPNGPVMQKKTTGWDASTERMYVRDGVLKGDVKHKLL 159
>pdb|4EMQ|A Chain A, Crystal Structure Of A Single Mutant Of Dronpa, The
Green-on-state Pdm1-4
pdb|4EMQ|B Chain B, Crystal Structure Of A Single Mutant Of Dronpa, The
Green-on-state Pdm1-4
pdb|4EMQ|C Chain C, Crystal Structure Of A Single Mutant Of Dronpa, The
Green-on-state Pdm1-4
pdb|4EMQ|D Chain D, Crystal Structure Of A Single Mutant Of Dronpa, The
Green-on-state Pdm1-4
pdb|4EMQ|E Chain E, Crystal Structure Of A Single Mutant Of Dronpa, The
Green-on-state Pdm1-4
pdb|4EMQ|F Chain F, Crystal Structure Of A Single Mutant Of Dronpa, The
Green-on-state Pdm1-4
Length = 255
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
Y++E GVN P G V+ +++ W +T+ D KG ++L
Sbjct: 145 YIYEIRFDGVNFPANGPVMQKRTVKWEPSTENLYVRDGVLKGDVNMAL 192
>pdb|2OHG|A Chain A, Structural Basis For Glutamte Racemase Inhibition
pdb|2OHV|A Chain A, Structural Basis For Glutamate Racemase Inhibition
Length = 264
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 18 FMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKG------- 70
F+LT V F + T WE ++ PVLG VL S TKG
Sbjct: 60 FLLTQNVKMIVF--ACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGT 117
Query: 71 --TVTNDHRGKGRTQLSLLPRSLQV---STPATKPSLNNND 106
TV +D R ++ LL S+QV + P P + +N+
Sbjct: 118 PMTVASDIY---RKKIQLLAPSIQVRSLACPKFVPIVESNE 155
>pdb|2OHO|A Chain A, Structural Basis For Glutamate Racemase Inhibitor
pdb|2OHO|B Chain B, Structural Basis For Glutamate Racemase Inhibitor
Length = 273
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 18 FMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKG------- 70
F+LT V F + T WE ++ PVLG VL S TKG
Sbjct: 69 FLLTQNVKMIVF--ACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGT 126
Query: 71 --TVTNDHRGKGRTQLSLLPRSLQV---STPATKPSLNNND 106
TV +D R ++ LL S+QV + P P + +N+
Sbjct: 127 PMTVASDIY---RKKIQLLAPSIQVRSLACPKFVPIVESNE 164
>pdb|2GX0|A Chain A, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein
pdb|2GX0|B Chain B, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein
pdb|2GX0|C Chain C, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein
pdb|2GX0|D Chain D, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein
pdb|2GX2|A Chain A, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|B Chain B, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|C Chain C, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|D Chain D, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|E Chain E, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|F Chain F, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|G Chain G, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|H Chain H, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|I Chain I, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|J Chain J, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|K Chain K, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
pdb|2GX2|L Chain L, Crystal Structural And Functional Analysis Of Gfp-Like
Fluorescent Protein Dronpa
Length = 241
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
Y++E GVN P G V+ +++ W +T+ D KG ++L
Sbjct: 131 YIYEIRFDGVNFPANGPVMQKRTVKWEPSTEKLYVRDGVLKGDVNMAL 178
>pdb|2IE2|A Chain A, The 1.7 A Crystal Structure Of Dronpa: A Photoswitchable
Green Fluorescent Protein
pdb|2IE2|B Chain B, The 1.7 A Crystal Structure Of Dronpa: A Photoswitchable
Green Fluorescent Protein
pdb|2IE2|C Chain C, The 1.7 A Crystal Structure Of Dronpa: A Photoswitchable
Green Fluorescent Protein
pdb|2IE2|D Chain D, The 1.7 A Crystal Structure Of Dronpa: A Photoswitchable
Green Fluorescent Protein
pdb|2IE2|E Chain E, The 1.7 A Crystal Structure Of Dronpa: A Photoswitchable
Green Fluorescent Protein
pdb|2IE2|F Chain F, The 1.7 A Crystal Structure Of Dronpa: A Photoswitchable
Green Fluorescent Protein
Length = 222
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
Y++E GVN P G V+ +++ W +T+ D KG ++L
Sbjct: 112 YIYEIRFDGVNFPANGPVMQKRTVKWEPSTEKLYVRDGVLKGDVNMAL 159
>pdb|2IOV|A Chain A, Bright-State Structure Of The Reversibly Switchable
Fluorescent Protein Dronpa
pdb|2IOV|B Chain B, Bright-State Structure Of The Reversibly Switchable
Fluorescent Protein Dronpa
pdb|2IOV|C Chain C, Bright-State Structure Of The Reversibly Switchable
Fluorescent Protein Dronpa
pdb|2IOV|D Chain D, Bright-State Structure Of The Reversibly Switchable
Fluorescent Protein Dronpa
pdb|2POX|A Chain A, Dark State Structure Of The Reversibly Switchable
Fluorescent Protein Dronpa
pdb|2POX|B Chain B, Dark State Structure Of The Reversibly Switchable
Fluorescent Protein Dronpa
pdb|2POX|C Chain C, Dark State Structure Of The Reversibly Switchable
Fluorescent Protein Dronpa
pdb|2POX|D Chain D, Dark State Structure Of The Reversibly Switchable
Fluorescent Protein Dronpa
pdb|2Z6Z|A Chain A, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Z|B Chain B, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Z|C Chain C, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Z|D Chain D, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Z|E Chain E, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Z|F Chain F, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
Length = 255
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
Y++E GVN P G V+ +++ W +T+ D KG ++L
Sbjct: 145 YIYEIRFDGVNFPANGPVMQKRTVKWEPSTEKLYVRDGVLKGDVNMAL 192
>pdb|2Z1O|A Chain A, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z1O|B Chain B, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z1O|C Chain C, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z1O|D Chain D, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Y|A Chain A, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Y|B Chain B, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Y|C Chain C, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
pdb|2Z6Y|D Chain D, Crystal Structure Of A Photoswitchable Gfp-Like Protein
Dronpa In The Bright-State
Length = 225
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
Y++E GVN P G V+ +++ W +T+ D KG ++L
Sbjct: 115 YIYEIRFDGVNFPANGPVMQKRTVKWEPSTEKLYVRDGVLKGDVNMAL 162
>pdb|3E5V|A Chain A, Crystal Structure Analysis Of Eqfp611 Double Mutant T122r,
N143s
Length = 242
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 40 VWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
V+ + +GVN P GAV+ +K+ W +T+ D +G +Q++L
Sbjct: 127 VYHAKVRGVNFPSNGAVMQKKTKGWEPSTEMLYPADGGLRGYSQMAL 173
>pdb|3ZUF|A Chain A, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|B Chain B, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|C Chain C, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|D Chain D, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|E Chain E, Padron Off (Non-Fluorescent) Btrans
pdb|3ZUF|F Chain F, Padron Off (Non-Fluorescent) Btrans
Length = 215
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDH--RGKGRTQLSL 86
Y++E GVN P G V+ +++ W ++T+ D + G LSL
Sbjct: 111 YIYEIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSL 160
>pdb|3ZUJ|A Chain A, Padron On (Fluorescent) Abcis
pdb|3ZUJ|B Chain B, Padron On (Fluorescent) Abcis
pdb|3ZUJ|C Chain C, Padron On (Fluorescent) Abcis
pdb|3ZUJ|D Chain D, Padron On (Fluorescent) Abcis
pdb|3ZUJ|E Chain E, Padron On (Fluorescent) Abcis
pdb|3ZUJ|F Chain F, Padron On (Fluorescent) Abcis
Length = 214
Score = 29.3 bits (64), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDH--RGKGRTQLSL 86
Y++E GVN P G V+ +++ W ++T+ D + G LSL
Sbjct: 111 YIYEIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSL 160
>pdb|3ZUL|A Chain A, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|B Chain B, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|C Chain C, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|D Chain D, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|E Chain E, Padron On (Fluorescent) Icis Intermediate State
pdb|3ZUL|F Chain F, Padron On (Fluorescent) Icis Intermediate State
Length = 221
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTND 75
Y++E GVN P G V+ +++ W ++T+ D
Sbjct: 111 YIYEIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRD 147
>pdb|3E5W|A Chain A, Crystal Structure Analysis Of Fp611
pdb|3E5W|B Chain B, Crystal Structure Analysis Of Fp611
pdb|3E5W|C Chain C, Crystal Structure Analysis Of Fp611
pdb|3E5W|D Chain D, Crystal Structure Analysis Of Fp611
Length = 242
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 40 VWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
V+ + GVN P GAV+ +K+ W +T+ D +G Q++L
Sbjct: 127 VYHAKVTGVNFPSNGAVMQKKTKGWEPSTEMLYPADGGLRGYCQMAL 173
>pdb|2OTB|A Chain A, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
In The Fluorescent State
pdb|2OTB|B Chain B, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
In The Fluorescent State
pdb|2OTE|A Chain A, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
In The Photobleached State
pdb|2OTE|B Chain B, Crystal Structure Of A Monomeric Cyan Fluorescent Protein
In The Photobleached State
Length = 214
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLL 87
+++E H KG N P G V+ +K+ W +T+ D G + LL
Sbjct: 111 FIYEIHLKGENFPPNGPVMQKKTLKWEPSTEILYVRDGVLVGDIKHKLL 159
>pdb|2VAD|A Chain A, Monomeric Red Fluorescent Protein, Dsred.m1
Length = 223
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
++++ KGVN P G V+ +K+ W +T+ D KG +L
Sbjct: 116 FIYKVKFKGVNFPADGPVMQKKTAGWEPSTEKLYPQDGVLKGEISHAL 163
>pdb|3U0L|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 1, Ph 4.5
pdb|3U0M|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 1, Ph 8.5
pdb|3U0N|A Chain A, Crystal Structure Of The Engineered Fluorescent Protein
Mruby, Crystal Form 2
Length = 230
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 40 VWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
V+ + +GVN P GAV+ +K+ W T+ D +G T ++L
Sbjct: 119 VYHAQVRGVNFPSNGAVMQKKTKGWEPNTEMMYPADGGLRGYTHMAL 165
>pdb|3LS3|A Chain A, Padron0.9-On (Fluorescent State)
pdb|3LS3|B Chain B, Padron0.9-On (Fluorescent State)
pdb|3LS3|C Chain C, Padron0.9-On (Fluorescent State)
pdb|3LS3|D Chain D, Padron0.9-On (Fluorescent State)
pdb|3LSA|A Chain A, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|B Chain B, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|C Chain C, Padron0.9-Off (Non-Fluorescent State)
pdb|3LSA|D Chain D, Padron0.9-Off (Non-Fluorescent State)
Length = 235
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 39 YVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDH--RGKGRTQLSL 86
Y+ E GVN P G V+ +++ W ++T+ D + G LSL
Sbjct: 125 YICEIRFDGVNFPANGPVMQKRTVKWELSTEKLYVRDGVLKSDGNYALSL 174
>pdb|2ICS|A Chain A, Crystal Structure Of An Adenine Deaminase
Length = 379
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 29 FERGFDKLTDYVWESHNKGV 48
++ DK+ D+ W+++NKGV
Sbjct: 221 LDQATDKIKDFAWQAYNKGV 240
>pdb|1UIS|A Chain A, The 2.0 Crystal Structure Of Eqfp611, A Far-Red
Fluorescent Protein From The Sea Anemone Entacmaea
Quadricolor
pdb|1UIS|B Chain B, The 2.0 Crystal Structure Of Eqfp611, A Far-Red
Fluorescent Protein From The Sea Anemone Entacmaea
Quadricolor
Length = 231
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 40 VWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
V+ + GVN P GAV+ +K+ W T+ D +G +Q++L
Sbjct: 116 VYHAKVTGVNFPSNGAVMQKKTKGWEPNTEMLYPADGGLRGYSQMAL 162
>pdb|3U8A|A Chain A, Crystal Structure Of Monomeric Reversibly Photoswitchable
Red Fluorescent Protein Rstagrfp In The Off State
pdb|3U8A|B Chain B, Crystal Structure Of Monomeric Reversibly Photoswitchable
Red Fluorescent Protein Rstagrfp In The Off State
pdb|3U8A|C Chain C, Crystal Structure Of Monomeric Reversibly Photoswitchable
Red Fluorescent Protein Rstagrfp In The Off State
pdb|3U8A|D Chain D, Crystal Structure Of Monomeric Reversibly Photoswitchable
Red Fluorescent Protein Rstagrfp In The Off State
pdb|3U8C|A Chain A, Crystal Structure Of Monomeric Reversibly Photoswitchable
Red Fluorescent Protein Rstagrfp In The On State
pdb|3U8C|B Chain B, Crystal Structure Of Monomeric Reversibly Photoswitchable
Red Fluorescent Protein Rstagrfp In The On State
pdb|3U8C|C Chain C, Crystal Structure Of Monomeric Reversibly Photoswitchable
Red Fluorescent Protein Rstagrfp In The On State
pdb|3U8C|D Chain D, Crystal Structure Of Monomeric Reversibly Photoswitchable
Red Fluorescent Protein Rstagrfp In The On State
Length = 243
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W AT+ D +GR ++L
Sbjct: 132 RGVNFPSNGPVMQKKTLGWEAATEMLYPADGGLEGRGDMAL 172
>pdb|3T6H|A Chain A, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|B Chain B, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|C Chain C, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|D Chain D, 2.2 Angstrom Crystal Structure Of Tagrfp-T
Length = 238
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W T+ D +GRT ++L
Sbjct: 120 RGVNFPSNGPVMQKKTLGWEANTEMLYPADGGLEGRTDMAL 160
>pdb|3BX9|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 2.0
pdb|3BX9|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 2.0
pdb|3BXA|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 4.2
pdb|3BXA|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 4.2
pdb|3BXB|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|C Chain C, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|D Chain D, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|E Chain E, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|F Chain F, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|G Chain G, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|H Chain H, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXC|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|C Chain C, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|D Chain D, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|E Chain E, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|F Chain F, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|G Chain G, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|H Chain H, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
Length = 243
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W +T+ D +GR+ ++L
Sbjct: 132 RGVNFPSNGPVMQKKTLGWEASTEMLYPADGGLEGRSDMAL 172
>pdb|3RWA|A Chain A, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|B Chain B, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|C Chain C, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|D Chain D, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|E Chain E, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|F Chain F, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|G Chain G, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|H Chain H, Crystal Structure Of Circular-Permutated Mkate
Length = 233
Score = 26.9 bits (58), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W +T+ D +GR+ ++L
Sbjct: 190 RGVNFPSNGPVMQKKTLGWEASTEMLYPADGGLEGRSDMAL 230
>pdb|6CSC|A Chain A, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|6CSC|B Chain B, Chicken Citrate Synthase Complex With
Trifluoroacetonyl-Coa And Citrate
pdb|1AL6|A Chain A, Chicken Citrate Synthase Complex With N-Hydroxyamido-Coa
And Oxaloacetate
Length = 437
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 34 DKLTDYVWESHNKGVNHPVLGAVLVQKSCP 63
+KL DY+W + N G P G +++K+ P
Sbjct: 299 EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP 328
>pdb|1AMZ|A Chain A, Chicken Citrate Synthase Complex With Nitromethylde-coa
And Malate
pdb|1CSH|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSI|A Chain A, A Very Short Hydrogen Bond Provides Only Moderate
Stabilization Of An Enzyme: Inhibitor Complex Of Citrate
Synthase
pdb|1CSR|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl- Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
pdb|1CSS|A Chain A, Alpha-Fluoro Acid And Alpha-Fluoro Amide Analogs Of
Acetyl-Coa As Inhibitors Of Of Citrate Synthase: Effect
Of Pka Matching On Binding Affinity And Hydrogen Bond
Length
Length = 435
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 34 DKLTDYVWESHNKGVNHPVLGAVLVQKSCP 63
+KL DY+W + N G P G +++K+ P
Sbjct: 297 EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP 326
>pdb|3SVU|A Chain A, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|B Chain B, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|C Chain C, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|D Chain D, Crystal Structure Of Mkate Mutant S143c
Length = 233
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W T+ D +GR+ ++L
Sbjct: 124 RGVNFPSNGPVMQKKTLGWEACTEMLYPADGGLEGRSDMAL 164
>pdb|2H5O|A Chain A, Crystal Structure Of Morange
pdb|2H5O|B Chain B, Crystal Structure Of Morange
Length = 234
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +++ D KG ++ L
Sbjct: 120 EFIYKVKLRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEIKMRL 168
>pdb|2C9I|A Chain A, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|B Chain B, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|C Chain C, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|D Chain D, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|E Chain E, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|F Chain F, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|G Chain G, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
pdb|2C9I|H Chain H, Structure Of The Fluorescent Protein Asfp499 From Anemonia
Sulcata
Length = 226
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 47 GVNHPVLGAVLVQKSCPWNIATKGTVTND 75
G N P G V+ +K+C W +T+ + D
Sbjct: 121 GTNFPANGPVMQKKTCGWEPSTETVIPRD 149
>pdb|3PJB|A Chain A, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 4.0
pdb|3PJB|B Chain B, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 4.0
Length = 229
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 47 GVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL-------LPRSLQVSTPATK 99
GVN P G+V+ +K+ W T+ D +G +Q++L L S + + + K
Sbjct: 121 GVNFPSNGSVMQKKTLGWEANTEMLYPADGGLRGHSQMALKLVGGGYLHCSFKTTYRSKK 180
Query: 100 PSLN 103
P+ N
Sbjct: 181 PAKN 184
>pdb|3PIB|A Chain A, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|B Chain B, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|C Chain C, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|D Chain D, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
Length = 236
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 47 GVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL-------LPRSLQVSTPATK 99
GVN P G+V+ +K+ W T+ D +G +Q++L L S + + + K
Sbjct: 128 GVNFPSNGSVMQKKTLGWEANTEMLYPADGGLRGHSQMALKLVGGGYLHCSFKTTYRSKK 187
Query: 100 PSLN 103
P+ N
Sbjct: 188 PAKN 191
>pdb|2QLH|A Chain A, Mplum I65l Mutant
pdb|2QLH|B Chain B, Mplum I65l Mutant
Length = 224
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +++ D KG ++ L
Sbjct: 116 EFIYKVKVRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEMKMRL 164
>pdb|2QLG|A Chain A, Mplum
pdb|2QLG|B Chain B, Mplum
Length = 224
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +++ D KG ++ L
Sbjct: 116 EFIYKVKVRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEMKMRL 164
>pdb|3SVN|A Chain A, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|B Chain B, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|C Chain C, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|D Chain D, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
Length = 233
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W +T+ D +GR ++L
Sbjct: 124 RGVNFPSNGPVMQKKTLGWEASTEMLYPADGGLEGRADMAL 164
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 34 DKLTDYVWESHNKGVNHPVLGAVLVQKSCP 63
+KL DY+W + N G P G +++K+ P
Sbjct: 299 EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP 328
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 34 DKLTDYVWESHNKGVNHPVLGAVLVQKSCP 63
+KL DY+W + N G P G +++K+ P
Sbjct: 299 EKLRDYIWNTLNSGRVVPGYGHAVLRKTDP 328
>pdb|4H3L|A Chain A, Mplum-e16p
pdb|4H3L|B Chain B, Mplum-e16p
Length = 232
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +++ D KG ++ L
Sbjct: 124 EFIYKVKVRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEMKMRL 172
>pdb|2QLI|A Chain A, Mplum E16q Mutant
pdb|2QLI|B Chain B, Mplum E16q Mutant
Length = 224
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +++ D KG ++ L
Sbjct: 116 EFIYKVKVRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEMKMRL 164
>pdb|3IP2|A Chain A, Crystal Structure Of Red Fluorescent Protein Neptune At Ph
7.0
Length = 242
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL-------LPRSLQVSTPAT 98
+GVN P G V+ +K+ W +T+ D +GR ++L L +L+ + +
Sbjct: 124 RGVNFPSNGPVMQKKTLGWEASTEMLYPADGGLEGRCDMALKLVGGGHLICNLKTTYRSK 183
Query: 99 KPSLN 103
KP+ N
Sbjct: 184 KPAKN 188
>pdb|3NF0|A Chain A, Mplum-Ttn
Length = 232
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +++ D KG ++ L
Sbjct: 124 EFIYKVKVRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEMKMRL 172
>pdb|3SVO|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVR|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVS|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|E Chain E, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|F Chain F, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|G Chain G, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|H Chain H, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
Length = 233
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W T+ D +GR ++L
Sbjct: 124 RGVNFPSNGPVMQKKTLGWEACTEMLYPADGGLEGRADMAL 164
>pdb|4H3M|A Chain A, Mplumayc-e16a
pdb|4H3M|B Chain B, Mplumayc-e16a
Length = 232
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +++ D KG ++ L
Sbjct: 124 EFIYKVKVRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEMKMRL 172
>pdb|4H3N|A Chain A, Mplumayc
Length = 232
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +++ D KG ++ L
Sbjct: 124 EFIYKVKVRGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEMKMRL 172
>pdb|3H1O|A Chain A, The Structure Of Fluorescent Protein Fp480
pdb|3H1O|B Chain B, The Structure Of Fluorescent Protein Fp480
pdb|3H1R|A Chain A, Order-Disorder Structure Of Fluorescent Protein Fp480
Length = 231
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W T+ D +GR L+L
Sbjct: 120 RGVNFPSNGPVMQKKTLGWEAHTEMLYPADGGLEGRADLAL 160
>pdb|3NED|A Chain A, Mrouge
Length = 231
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W ++ D KG ++ L
Sbjct: 117 EFIYKVKLRGTNFPSDGPVMQKKTMGWEACSERMYPEDGALKGEMKMRL 165
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 40 VWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLLPR 89
V+ + +GVN P GAV+ +K+ W T+ +T + + + SL +
Sbjct: 265 VYHAQVRGVNFPSNGAVMQKKTKGWE-PTRDQLTEEQIAEFKEAFSLFDK 313
>pdb|3NEZ|A Chain A, Mrojoa
pdb|3NEZ|D Chain D, Mrojoa
Length = 217
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ G N P G V+ +K+ W +++ D KG +L L
Sbjct: 112 EFIYKVKLHGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEIKLRL 160
>pdb|3NEZ|B Chain B, Mrojoa
pdb|3NEZ|C Chain C, Mrojoa
Length = 216
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ G N P G V+ +K+ W +++ D KG +L L
Sbjct: 111 EFIYKVKLHGTNFPSDGPVMQKKTMGWEASSERMYPEDGALKGEIKLRL 159
>pdb|3M22|A Chain A, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|B Chain B, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|C Chain C, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|D Chain D, Crystal Structure Of Tagrfp Fluorescent Protein
Length = 235
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 46 KGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+GVN P G V+ +K+ W T+ D +GR+ ++L
Sbjct: 124 RGVNFPSNGPVMQKKTLGWEANTEMLYPADGGLEGRSDMAL 164
>pdb|3LF3|A Chain A, Crystal Structure Of Fast Fluorescent Timer Fast-Ft
Length = 220
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 38 DYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
+++++ +G N P G V+ +K+ W +T+ D KG + L
Sbjct: 113 EFIYKVKLRGTNFPSDGPVMQKKTMGWEASTERMYPEDGALKGEIKQRL 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,878,743
Number of Sequences: 62578
Number of extensions: 143859
Number of successful extensions: 259
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 60
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)