BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8971
(132 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R1I1|QCR9_MOUSE Cytochrome b-c1 complex subunit 9 OS=Mus musculus GN=Uqcr10 PE=1
SV=1
Length = 64
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 32/41 (78%)
Query: 7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+Y+LLF++TS+F LT+AVGA FER FD+ D ++E N+G
Sbjct: 10 LYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINEG 50
>sp|P00130|QCR9_BOVIN Cytochrome b-c1 complex subunit 9 OS=Bos taurus GN=UQCR10 PE=1
SV=3
Length = 64
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 3 LGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
L +Y+LLF++TS+F LT+ VGA FER FD+ D ++E N+G
Sbjct: 6 LTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 50
>sp|Q9UDW1|QCR9_HUMAN Cytochrome b-c1 complex subunit 9 OS=Homo sapiens GN=UQCR10 PE=1
SV=3
Length = 63
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 3 LGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
L + +Y+LLF++TS+F LT+ VG FER FD+ D +++ N+G
Sbjct: 6 LTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEG 50
>sp|O74433|QCR9_SCHPO Cytochrome b-c1 complex subunit 9 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=qcr9 PE=3 SV=2
Length = 67
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGV 48
+T+YN+ F++ SSF T+ V AF + GFD TD VW+ N G+
Sbjct: 4 STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGL 47
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 77 RGKGRTQLSLLPRSLQVSTPATKPSLNNNDSTPG-----SDSKTSTMKSNDDFRNMLLGK 131
RGKGRTQLSLLPR+LQ A + N PG S + + SN DF +LL K
Sbjct: 906 RGKGRTQLSLLPRALQRQGAAPQAE---NGPAPGPAVAPSVATEAPKMSNADFAKLLLRK 962
>sp|Q9XY35|QCR9_DROME Cytochrome b-c1 complex subunit 9 OS=Drosophila melanogaster
GN=ox PE=1 SV=1
Length = 55
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 6 TVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+YN LFK+TS++ + + AF FER D + ++E NKG
Sbjct: 3 VIYNTLFKRTSTYAVAIIASAFFFERALDVTSVAIFEGINKG 44
>sp|Q6CJX2|QCR9_KLULA Cytochrome b-c1 complex subunit 9 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=QCR9 PE=3 SV=3
Length = 69
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 1 MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
M+ +T+Y +FK+ S F+ TV AF F+ FD +E+HNKG
Sbjct: 1 MSFASTLYKTVFKRNSVFVGTVFASAFVFQAAFDTGVTSWYENHNKG 47
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 77 RGKGRTQLSLLPRSLQVSTPATKPSLNNNDSTPGSDSKTSTMK---SNDDFRNMLLGK 131
RGKGRTQLSLLPR+LQ + A + N + P + +T SN DF + L K
Sbjct: 906 RGKGRTQLSLLPRALQRPSAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLFLRK 963
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 77 RGKGRTQLSLLPRSLQ---VSTPATKPSLNNNDSTPGSDSKTSTMKSNDDFRNMLLGK 131
RGKGRTQLSLLPR+LQ + P + + + + SN DF + L K
Sbjct: 924 RGKGRTQLSLLPRALQRPGAAAPQAENGPAAAPAVAAPAATEAPKMSNADFAKLFLRK 981
>sp|P22289|QCR9_YEAST Cytochrome b-c1 complex subunit 9 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=QCR9 PE=1 SV=2
Length = 66
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
+++Y FK+ + F+ T+ GAF F+ FD +E+HNKG
Sbjct: 4 SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 46
>sp|O32465|DNAJ_BUCAI Chaperone protein DnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=dnaJ PE=3 SV=2
Length = 377
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 43 SHNKGVNHPVLGAVLVQKSCPWNIATKGTVTND----HRGKGRTQLSLLPRSLQVSTPAT 98
H KG H G VQ+SCP KGT+ D G+GR + + L V P
Sbjct: 165 CHGKGQIHIRKGFFTVQQSCP-TCHGKGTIITDPCNLCHGQGRVETYKI---LSVKIP-- 218
Query: 99 KPSLNNND 106
P L+ ND
Sbjct: 219 -PGLDTND 225
>sp|B8D8V3|DNAJ_BUCA5 Chaperone protein DnaJ OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain 5A) GN=dnaJ PE=3 SV=1
Length = 377
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 43 SHNKGVNHPVLGAVLVQKSCPWNIATKGTVTND----HRGKGRTQLSLLPRSLQVSTPAT 98
H KG H G VQ+SCP KGT+ D G+GR + + L V P
Sbjct: 165 CHGKGQIHIRKGFFTVQQSCP-TCHGKGTIITDPCNLCHGQGRVETYKI---LSVKIP-- 218
Query: 99 KPSLNNND 106
P L+ ND
Sbjct: 219 -PGLDTND 225
>sp|B5XJX3|MURI_STRPZ Glutamate racemase OS=Streptococcus pyogenes serotype M49 (strain
NZ131) GN=murI PE=3 SV=1
Length = 264
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 18 FMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKG------- 70
F+LT V F + T WE ++ PVLG VL S TKG
Sbjct: 60 FLLTQNVKMIVF--ACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGT 117
Query: 71 --TVTNDHRGKGRTQLSLLPRSLQV---STPATKPSLNNND 106
TV +D R ++ LL S+QV + P P + +N+
Sbjct: 118 PMTVASDIY---RKKIQLLAPSIQVRSLACPKFVPIVESNE 155
>sp|Q1JNA9|MURI_STRPC Glutamate racemase OS=Streptococcus pyogenes serotype M12 (strain
MGAS9429) GN=murI PE=3 SV=1
Length = 264
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 18 FMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKG------- 70
F+LT V F + T WE ++ PVLG VL S TKG
Sbjct: 60 FLLTQNVKMIVF--ACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGT 117
Query: 71 --TVTNDHRGKGRTQLSLLPRSLQV---STPATKPSLNNND 106
TV +D R ++ LL S+QV + P P + +N+
Sbjct: 118 PMTVASDIY---RKKIQLLAPSIQVRSLACPKFVPIVESNE 155
>sp|Q1JDD6|MURI_STRPB Glutamate racemase OS=Streptococcus pyogenes serotype M12 (strain
MGAS2096) GN=murI PE=3 SV=1
Length = 264
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 18 FMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKG------- 70
F+LT V F + T WE ++ PVLG VL S TKG
Sbjct: 60 FLLTQNVKMIVF--ACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGT 117
Query: 71 --TVTNDHRGKGRTQLSLLPRSLQV---STPATKPSLNNND 106
TV +D R ++ LL S+QV + P P + +N+
Sbjct: 118 PMTVASDIY---RKKIQLLAPSIQVRSLACPKFVPIVESNE 155
>sp|Q9A1B7|MURI_STRP1 Glutamate racemase OS=Streptococcus pyogenes serotype M1 GN=murI
PE=1 SV=1
Length = 264
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 18 FMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKG------- 70
F+LT V F + T WE ++ PVLG VL S TKG
Sbjct: 60 FLLTQNVKMIVF--ACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKSTTKGQVGVIGT 117
Query: 71 --TVTNDHRGKGRTQLSLLPRSLQV---STPATKPSLNNND 106
TV +D R ++ LL S+QV + P P + +N+
Sbjct: 118 PMTVASDIY---RKKIQLLAPSIQVRSLACPKFVPIVESNE 155
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 44 HNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSL 86
HNK L +VQ+ C N+ T G V N +G T L+L
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,639,031
Number of Sequences: 539616
Number of extensions: 1810210
Number of successful extensions: 4161
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4141
Number of HSP's gapped (non-prelim): 42
length of query: 132
length of database: 191,569,459
effective HSP length: 98
effective length of query: 34
effective length of database: 138,687,091
effective search space: 4715361094
effective search space used: 4715361094
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)