Query psy8971
Match_columns 132
No_of_seqs 156 out of 214
Neff 4.2
Searched_HMMs 46136
Date Sat Aug 17 00:24:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05365 UCR_UQCRX_QCR9: Ubiqu 100.0 1.6E-30 3.5E-35 171.5 4.6 54 5-58 2-55 (55)
2 KOG3494|consensus 99.9 1.4E-28 3E-33 169.1 3.3 60 1-61 11-70 (72)
3 PF05391 Lsm_interact: Lsm int 98.5 1.2E-07 2.5E-12 52.2 2.3 16 115-130 6-21 (21)
4 KOG0128|consensus 98.1 1.9E-06 4.1E-11 81.3 3.5 52 69-130 830-881 (881)
5 COG4905 Predicted membrane pro 50.9 11 0.00024 31.4 1.9 29 15-46 70-100 (243)
6 KOG4490|consensus 39.3 25 0.00053 28.2 2.2 34 10-43 135-168 (183)
7 PF13422 DUF4110: Domain of un 29.8 61 0.0013 23.4 2.8 36 8-43 18-61 (96)
8 COG3752 Steroid 5-alpha reduct 18.2 1.4E+02 0.0031 25.6 3.3 47 18-64 152-205 (272)
9 PF03963 FlgD: Flagellar hook 17.1 1.7E+02 0.0036 20.3 2.9 14 116-129 28-41 (81)
10 PRK00033 clpS ATP-dependent Cl 16.6 1.7E+02 0.0036 21.3 2.9 30 17-48 41-70 (100)
No 1
>PF05365 UCR_UQCRX_QCR9: Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like; InterPro: IPR008027 The UQCRX/QCR9 protein is the 9/10 subunit of complex III, and is a protein of about 7 kDa. Deletion of QCR9 results in the inability of Saccharomyces cerevisiae to grow on a fermentable carbon source []. The protein is part of the mitchondrial respiratory chain. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c, 0005740 mitochondrial envelope; PDB: 3CX5_T 2IBZ_I 1KYO_I 3CXH_T 1EZV_I 1P84_I 1KB9_I 3H1L_W 3L71_W 3L73_W ....
Probab=99.96 E-value=1.6e-30 Score=171.50 Aligned_cols=54 Identities=43% Similarity=0.723 Sum_probs=52.9
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhc
Q psy8971 5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLV 58 (132)
Q Consensus 5 ~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~ 58 (132)
+++||+||||||||+++|++|||+||++||.++|++||++|||||||||||+|+
T Consensus 2 ~~~Y~~~fkRns~y~~~i~~gaf~fe~~fd~~~d~~w~~~NkGKlwkDIk~ky~ 55 (55)
T PF05365_consen 2 STIYNTFFKRNSTYVLTIFAGAFFFERAFDSATDKIWDSINKGKLWKDIKHKYE 55 (55)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHGGGTS
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCCcccChhhcC
Confidence 689999999999999999999999999999999999999999999999999996
No 2
>KOG3494|consensus
Probab=99.95 E-value=1.4e-28 Score=169.09 Aligned_cols=60 Identities=32% Similarity=0.535 Sum_probs=57.3
Q ss_pred CchHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhccCC
Q psy8971 1 MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKS 61 (132)
Q Consensus 1 Ms~~~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~~ 61 (132)
|++ ++|||+||||||+|+++||+||||||++||.++++|||.+|+||+|||||.+++.++
T Consensus 11 ma~-s~iYntffrRnSvyv~tI~asAFf~e~afDv~~~s~wer~NkGk~wkdik~r~~~~d 70 (72)
T KOG3494|consen 11 MAF-SGIYNTFFRRNSVYVTTIIASAFFFERAFDVGVHSLWERNNKGKLWKDIKVRGQRPD 70 (72)
T ss_pred hhH-HHHHHHHHhccceeehhhHHHHHHHHHHHHHhHHHHHhhccccchHHHhHHhhcCCC
Confidence 555 799999999999999999999999999999999999999999999999999999875
No 3
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=98.46 E-value=1.2e-07 Score=52.18 Aligned_cols=16 Identities=63% Similarity=0.866 Sum_probs=13.9
Q ss_pred CCCCCChHHHHHhhcC
Q psy8971 115 TSTMKSNDDFRNMLLG 130 (132)
Q Consensus 115 ~~~~mSN~DFrkmLl~ 130 (132)
++++|||+|||||||+
T Consensus 6 ~~~p~SNddFrkmfl~ 21 (21)
T PF05391_consen 6 TAKPKSNDDFRKMFLK 21 (21)
T ss_pred ccCccchHHHHHHHcC
Confidence 3678999999999986
No 4
>KOG0128|consensus
Probab=98.11 E-value=1.9e-06 Score=81.26 Aligned_cols=52 Identities=33% Similarity=0.428 Sum_probs=33.0
Q ss_pred cCcccccCCCCccceeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhhcC
Q psy8971 69 KGTVTNDHRGKGRTQLSLLPRSLQVSTPATKPSLNNNDSTPGSDSKTSTMKSNDDFRNMLLG 130 (132)
Q Consensus 69 ~~~~~~~srGkgRtqLsllPRaL~r~t~~~~~~~~~~~~~~~~~~~~~~~mSN~DFrkmLl~ 130 (132)
||+.++|.|+||++||.=-|.... ++.++. .++.++.+.+|||+|||||||+
T Consensus 830 ~~~e~~g~r~kg~~ql~~~~~~~~-----~~~~~~-----~~e~~~~a~pkSNDDFRKMFLK 881 (881)
T KOG0128|consen 830 KGEEPKGERQKGDDQLGEEQSGVE-----QKGDEK-----KEEEMPAAVPKSNDDFRKMFLK 881 (881)
T ss_pred cccccccccccccccccccccccc-----cccchh-----cccccccccCcchHHHHHHhcC
Confidence 478889999999999921111111 111111 1133344678999999999996
No 5
>COG4905 Predicted membrane protein [Function unknown]
Probab=50.85 E-value=11 Score=31.44 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=23.5
Q ss_pred chhHHHHH--HHHHHHHhhhhhhhhhHHHhhcCC
Q psy8971 15 TSSFMLTV--AVGAFAFERGFDKLTDYVWESHNK 46 (132)
Q Consensus 15 nStf~~tI--~~gAf~fE~~fD~~~d~iwd~~Nk 46 (132)
+|.++.|+ ++++|+.|..|+. +|||.+|-
T Consensus 70 fsi~ivTv~Eyvt~~ILEa~Fn~---kwWDYsn~ 100 (243)
T COG4905 70 FSIFIVTVLEYVTGFILEAIFNC---KWWDYSND 100 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---cccccCCC
Confidence 57777776 4899999999985 79999883
No 6
>KOG4490|consensus
Probab=39.28 E-value=25 Score=28.24 Aligned_cols=34 Identities=15% Similarity=0.365 Sum_probs=29.0
Q ss_pred HHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhh
Q psy8971 10 LLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWES 43 (132)
Q Consensus 10 ~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~ 43 (132)
.+|=.||.|++.+++.+||.=.-+.+..|.|...
T Consensus 135 SiFYnNslyL~v~iv~sFFiLkN~~P~~Nyi~S~ 168 (183)
T KOG4490|consen 135 SIFYNNSLYLTVMIVSSFFILKNVAPVFNYIIST 168 (183)
T ss_pred EEEeccchHHHHHHHHHHHHHhccchhhhhhhhh
Confidence 4567899999999999999988888888887654
No 7
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=29.75 E-value=61 Score=23.43 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.0
Q ss_pred HHHHhhcchhHHHHHHHHHHHHh--------hhhhhhhhHHHhh
Q psy8971 8 YNLLFKKTSSFMLTVAVGAFAFE--------RGFDKLTDYVWES 43 (132)
Q Consensus 8 Yn~~frRnStf~~tI~~gAf~fE--------~~fD~~~d~iwd~ 43 (132)
.+.||-|++.|...+++...-.. .+||.+-++|||.
T Consensus 18 Lr~Ff~RT~~~W~~~a~~~~~~~~~~KeLrk~aF~lAe~Ry~E~ 61 (96)
T PF13422_consen 18 LRDFFARTSEYWQEWAIESNRDAHRGKELRKDAFDLAEERYWEL 61 (96)
T ss_pred HHHHHHHhHHHHHHHHHHccccccchHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999888755 4899999999986
No 8
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=18.16 E-value=1.4e+02 Score=25.63 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhh-cCCCCC-----Cccccc-hhccCCCcc
Q psy8971 18 FMLTVAVGAFAFERGFDKLTDYVWES-HNKGVN-----HPVLGA-VLVQKSCPW 64 (132)
Q Consensus 18 f~~tI~~gAf~fE~~fD~~~d~iwd~-~NkGKl-----WkDIk~-k~~~~~~~~ 64 (132)
..++|.+-+|+||..=|.--..+-+. .||||+ |.==|| +|..+.|.|
T Consensus 152 ~g~~iwivg~~fE~lgD~QL~~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~W 205 (272)
T COG3752 152 IGLAIWIVGIVFEALGDAQLWVFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVW 205 (272)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhChhhccccccccceecccCcchHHHHHHH
Confidence 45678888999999999877777655 899985 555555 577777776
No 9
>PF03963 FlgD: Flagellar hook capping protein - N-terminal region; InterPro: IPR005648 FlgD is known to be absolutely required for hook assembly, yet it has not been detected in the mature flagellum []. It appears to act as a hook-capping protein to enable assembly of hook protein subunits [].
Probab=17.13 E-value=1.7e+02 Score=20.34 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=11.8
Q ss_pred CCCCChHHHHHhhc
Q psy8971 116 STMKSNDDFRNMLL 129 (132)
Q Consensus 116 ~~~mSN~DFrkmLl 129 (132)
...|+.+||-|||.
T Consensus 28 ~~~l~~d~FLkLLv 41 (81)
T PF03963_consen 28 NSSLDQDDFLKLLV 41 (81)
T ss_pred cccccHHHHHHHHH
Confidence 45799999999985
No 10
>PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS; Reviewed
Probab=16.60 E-value=1.7e+02 Score=21.27 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCC
Q psy8971 17 SFMLTVAVGAFAFERGFDKLTDYVWESHNKGV 48 (132)
Q Consensus 17 tf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGK 48 (132)
-||.-++.-.| ....+.|..-.|+-||+|+
T Consensus 41 d~Vv~vL~~vf--~~s~~~A~~iml~vH~~G~ 70 (100)
T PRK00033 41 EFVVYVLQKFF--GYDRERATQIMLEVHNEGK 70 (100)
T ss_pred HHHHHHHHHHH--CCCHHHHHHHHHHHhcCCc
Confidence 47777777766 8888999999999999997
Done!