Query psy8971
Match_columns 132
No_of_seqs 156 out of 214
Neff 4.2
Searched_HMMs 29240
Date Sat Aug 17 00:24:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8971.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8971hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_J Ubiquinol-cytochrome C 100.0 1.7E-32 5.8E-37 183.9 4.9 60 1-60 3-62 (62)
2 3cx5_I Cytochrome B-C1 complex 100.0 6.1E-31 2.1E-35 177.7 3.2 58 4-61 2-59 (65)
3 3pc7_A DNA ligase 3; DNA repai 24.1 17 0.00057 24.8 0.1 12 38-49 73-84 (88)
4 1x58_A Hypothetical protein 49 17.2 20 0.00069 23.3 -0.7 23 47-69 27-49 (62)
5 1wy3_A Villin; structural prot 15.2 72 0.0025 18.3 1.4 11 119-129 1-11 (35)
6 1und_A Advillin, P92; actin bi 14.3 78 0.0027 18.4 1.4 11 119-129 3-13 (37)
7 2xl1_A Arginine attenuator pep 12.6 85 0.0029 17.0 1.2 15 33-47 11-25 (26)
8 3f75_P Toxopain-2, cathepsin L 10.5 1.1E+02 0.0038 21.1 1.5 13 118-130 75-87 (106)
9 3arc_T Photosystem II reaction 9.9 2.2E+02 0.0075 16.2 2.4 17 17-33 7-23 (32)
10 1inz_A EPS15-interacting porte 9.8 1.8E+02 0.006 21.2 2.5 40 16-56 41-81 (148)
No 1
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=99.97 E-value=1.7e-32 Score=183.89 Aligned_cols=60 Identities=38% Similarity=0.593 Sum_probs=57.7
Q ss_pred CchHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhccC
Q psy8971 1 MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQK 60 (132)
Q Consensus 1 Ms~~~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~ 60 (132)
|++++++||+||||||||+++||+|||+||++||.++|+|||++|||||||||+|+|+++
T Consensus 3 ~~~~~~~Y~~~frRnS~y~~~i~~gaf~fe~~~d~~~d~iw~~~NkGKlwkDIk~ky~~~ 62 (62)
T 1pp9_J 3 PTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYENK 62 (62)
T ss_dssp CCHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHGGGTC-C
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCCcccChHhhccC
Confidence 889999999999999999999999999999999999999999999999999999999863
No 2
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=99.96 E-value=6.1e-31 Score=177.71 Aligned_cols=58 Identities=29% Similarity=0.453 Sum_probs=54.6
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhccCC
Q psy8971 4 GNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKS 61 (132)
Q Consensus 4 ~~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~~ 61 (132)
++++||+||||||||+++||+|||+||++||.++|+|||++|||||||||+++|++++
T Consensus 2 ~~~iY~~~fkRnSty~~~I~~gaf~fE~~fd~~~d~iw~~~NkGKlwkDIk~ky~~~~ 59 (65)
T 3cx5_I 2 FSSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKGKLWKDVKARIAAGD 59 (65)
T ss_dssp CHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHCCC--
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCCcccChhhhcCcc
Confidence 4789999999999999999999999999999999999999999999999999998764
No 3
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=24.14 E-value=17 Score=24.82 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=9.8
Q ss_pred hHHHhhcCCCCC
Q psy8971 38 DYVWESHNKGVN 49 (132)
Q Consensus 38 d~iwd~~NkGKl 49 (132)
.=|||.+|+|++
T Consensus 73 ~WI~dcI~k~~L 84 (88)
T 3pc7_A 73 EWIWACIRKRRL 84 (88)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHhCCcc
Confidence 348999999987
No 4
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=17.22 E-value=20 Score=23.27 Aligned_cols=23 Identities=4% Similarity=-0.110 Sum_probs=15.7
Q ss_pred CCCCccccchhccCCCccccccc
Q psy8971 47 GVNHPVLGAVLVQKSCPWNIATK 69 (132)
Q Consensus 47 GKlWkDIk~k~~~~~~~~~~~~~ 69 (132)
|+.|++|...|.-..+-=++|+|
T Consensus 27 G~~W~~I~~~y~f~~~RT~VdLK 49 (62)
T 1x58_A 27 GNHWNSILWSFPFQKGRRAVDLA 49 (62)
T ss_dssp CSCHHHHHHHSCCCTTCCHHHHH
T ss_pred hHhHHHHHHhCCCccCcccchHH
Confidence 88999999888654444444444
No 5
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=15.21 E-value=72 Score=18.34 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.4
Q ss_pred CChHHHHHhhc
Q psy8971 119 KSNDDFRNMLL 129 (132)
Q Consensus 119 mSN~DFrkmLl 129 (132)
||.+||.+.|-
T Consensus 1 Lsd~dF~~vFg 11 (35)
T 1wy3_A 1 LSDEDFKAVFG 11 (35)
T ss_dssp CCHHHHHHHHS
T ss_pred CCHHHHHHHHC
Confidence 68889887763
No 6
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=14.30 E-value=78 Score=18.36 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=8.9
Q ss_pred CChHHHHHhhc
Q psy8971 119 KSNDDFRNMLL 129 (132)
Q Consensus 119 mSN~DFrkmLl 129 (132)
||.+||.+.|-
T Consensus 3 Lsd~dF~~vFg 13 (37)
T 1und_A 3 LSEQDFVSVFG 13 (37)
T ss_dssp CCHHHHHHHHS
T ss_pred CCHHHHHHHHC
Confidence 78999988763
No 7
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=12.61 E-value=85 Score=17.00 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=12.3
Q ss_pred hhhhhhHHHhhcCCC
Q psy8971 33 FDKLTDYVWESHNKG 47 (132)
Q Consensus 33 fD~~~d~iwd~~NkG 47 (132)
-|...|.+|...|..
T Consensus 11 qdylsdhlwralna~ 25 (26)
T 2xl1_A 11 QDYLSDHLWRALNAX 25 (26)
T ss_pred HHHHHHHHHHHHhcc
Confidence 478899999998864
No 8
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=10.51 E-value=1.1e+02 Score=21.07 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=11.3
Q ss_pred CCChHHHHHhhcC
Q psy8971 118 MKSNDDFRNMLLG 130 (132)
Q Consensus 118 ~mSN~DFrkmLl~ 130 (132)
.|++++|+.+++.
T Consensus 75 DLT~eEF~~~~lg 87 (106)
T 3f75_P 75 DLSRDEFRRKYLG 87 (106)
T ss_dssp TCCHHHHHHHSCC
T ss_pred cCCHHHHHHHHcC
Confidence 6999999998875
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=9.86 E-value=2.2e+02 Score=16.23 Aligned_cols=17 Identities=24% Similarity=0.467 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHhhhh
Q psy8971 17 SFMLTVAVGAFAFERGF 33 (132)
Q Consensus 17 tf~~tI~~gAf~fE~~f 33 (132)
+|+.+...|.++|-+.|
T Consensus 7 t~ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 7 VFIFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 45566666666666555
No 10
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=9.84 E-value=1.8e+02 Score=21.22 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhHHHhhcCC-CCCCccccch
Q psy8971 16 SSFMLTVAVGAFAFERGFDKLTDYVWESHNK-GVNHPVLGAV 56 (132)
Q Consensus 16 Stf~~tI~~gAf~fE~~fD~~~d~iwd~~Nk-GKlWkDIk~k 56 (132)
+..+.-|.-.+|-. ..|..+++-+|...|- ||.|..|..-
T Consensus 41 ~~~m~eIa~~T~~~-~~~~eIm~~l~kRL~d~~k~WR~vyKa 81 (148)
T 1inz_A 41 SSLMSEIADLTYNV-VAFSEIMSMIWKRLNDHGKNWRHVYKA 81 (148)
T ss_dssp SCHHHHHHHHHTSS-HHHHHHHHHHHHGGGCCSSCTHHHHHH
T ss_pred HHHHHHHHHHhCCH-hhHHHHHHHHHHHHccCCcchhHhhHH
Confidence 34555566666653 5677788999999764 7899888764
Done!