Query psy8971
Match_columns 132
No_of_seqs 156 out of 214
Neff 4.2
Searched_HMMs 13730
Date Sat Aug 17 00:25:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8971.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8971hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjw_ f.23.14.1 (W:) Subunit 100.0 5.2E-34 3.8E-38 189.8 5.0 59 2-60 4-62 (62)
2 d3cx5i1 f.23.14.1 (I:4-58) Sub 100.0 2.6E-32 1.9E-36 177.8 3.5 54 5-58 1-54 (55)
3 d1ppjj_ f.23.14.1 (J:) Subunit 99.7 6.3E-20 4.6E-24 108.0 1.1 33 28-60 1-33 (33)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 27.3 22 0.0016 18.6 2.4 19 16-34 6-24 (30)
5 d1unda_ a.14.1.1 (A:) Advillin 20.0 22 0.0016 19.3 1.4 11 119-129 2-12 (36)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 17.8 34 0.0024 18.8 1.9 12 18-29 25-36 (37)
7 d1yu8x1 a.14.1.1 (X:42-76) Vil 17.7 26 0.0019 18.9 1.4 11 119-129 1-11 (35)
8 d1nuna_ b.42.1.1 (A:) Fibrobla 12.8 35 0.0025 22.8 1.3 30 63-92 107-139 (139)
9 d1ihka_ b.42.1.1 (A:) Fibrobla 11.3 41 0.003 23.1 1.3 32 60-91 107-141 (157)
10 d1yu5x1 a.14.1.1 (X:10-76) Vil 9.9 55 0.004 19.8 1.4 12 118-129 32-43 (67)
No 1
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.98 E-value=5.2e-34 Score=189.80 Aligned_cols=59 Identities=39% Similarity=0.616 Sum_probs=56.7
Q ss_pred chHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhccC
Q psy8971 2 ALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQK 60 (132)
Q Consensus 2 s~~~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~ 60 (132)
|+++++||+||||||||+++|++|||+||++||.++|+|||++|+|||||||||||+++
T Consensus 4 sl~~~lYn~lfrRnStf~~tI~~gAf~fE~~fD~~~d~iwe~~NkGKlWKDIk~ky~~k 62 (62)
T d1ppjw_ 4 TLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYENK 62 (62)
T ss_dssp CHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHGGGTC-C
T ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHhccC
Confidence 68999999999999999999999999999999999999999999999999999999975
No 2
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.97 E-value=2.6e-32 Score=177.82 Aligned_cols=54 Identities=31% Similarity=0.523 Sum_probs=52.6
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhc
Q psy8971 5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLV 58 (132)
Q Consensus 5 ~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~ 58 (132)
+++||+||||||||+++||+|||+||++||.++|+|||++|||||||||||||.
T Consensus 1 stiY~~lfrRnSv~~~tI~~gAf~fe~~fD~~~d~~we~~NkGKlWkDIk~k~~ 54 (55)
T d3cx5i1 1 SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKGKLWKDVKARIA 54 (55)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHCC
T ss_pred ChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHhhc
Confidence 589999999999999999999999999999999999999999999999999985
No 3
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.75 E-value=6.3e-20 Score=107.99 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=30.9
Q ss_pred HHhhhhhhhhhHHHhhcCCCCCCccccchhccC
Q psy8971 28 AFERGFDKLTDYVWESHNKGVNHPVLGAVLVQK 60 (132)
Q Consensus 28 ~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~ 60 (132)
|||++||.++|+|||++|+|||||||||+|+++
T Consensus 1 fFErafD~~~d~i~d~~NkGklWKdIkhkYe~k 33 (33)
T d1ppjj_ 1 FFERAFDQGADAIYEHINEGKLWKHIKHKYENK 33 (33)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTSHHHHGGGTC-C
T ss_pred ChHHHHhhhHHHHHHHhcccchHHHHHHHhccC
Confidence 699999999999999999999999999999974
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.33 E-value=22 Score=18.61 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHhhhhh
Q psy8971 16 SSFMLTVAVGAFAFERGFD 34 (132)
Q Consensus 16 Stf~~tI~~gAf~fE~~fD 34 (132)
.+++.+.++|-|+|-+.|-
T Consensus 6 yv~ifac~i~lfffaiffr 24 (30)
T d2axtt1 6 YVFIFACIIALFFFAIFFR 24 (30)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 3567788889999887763
No 5
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.98 E-value=22 Score=19.35 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=8.7
Q ss_pred CChHHHHHhhc
Q psy8971 119 KSNDDFRNMLL 129 (132)
Q Consensus 119 mSN~DFrkmLl 129 (132)
||.+||.+.|-
T Consensus 2 Lsd~dF~~vFg 12 (36)
T d1unda_ 2 LSEQDFVSVFG 12 (36)
T ss_dssp CCHHHHHHHHS
T ss_pred CCHHHHHHHHC
Confidence 78899988764
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.81 E-value=34 Score=18.82 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy8971 18 FMLTVAVGAFAF 29 (132)
Q Consensus 18 f~~tI~~gAf~f 29 (132)
|+.+|+.+.+||
T Consensus 25 fvl~vLFssYfF 36 (37)
T d2axtl1 25 LVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 344444444444
No 7
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=17.74 E-value=26 Score=18.92 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.4
Q ss_pred CChHHHHHhhc
Q psy8971 119 KSNDDFRNMLL 129 (132)
Q Consensus 119 mSN~DFrkmLl 129 (132)
||.+||...|-
T Consensus 1 Lsd~dF~~vfg 11 (35)
T d1yu8x1 1 LSDEDFKAVFG 11 (35)
T ss_dssp SCHHHHHHHHS
T ss_pred CCHHHHHHHHC
Confidence 68889987763
No 8
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.75 E-value=35 Score=22.83 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=16.8
Q ss_pred cccccc--cCcccccCCCCcc-ceecccccccc
Q psy8971 63 PWNIAT--KGTVTNDHRGKGR-TQLSLLPRSLQ 92 (132)
Q Consensus 63 ~~~~~~--~~~~~~~srGkgR-tqLsllPRaL~ 92 (132)
.|-+++ +|.+..|.+-+.. .-.-||||.+|
T Consensus 107 ~~yval~~~G~~r~g~~t~~~~~~~~FLp~~v~ 139 (139)
T d1nuna_ 107 QMYVALNGKGAPRRGQKTRRKNTSAHFLPMVVH 139 (139)
T ss_dssp EEECCBCTTSCBCBGGGCCTTSGGGCEEEEECC
T ss_pred eEEEEECCCCCcccccccCCCCccccEEEEecC
Confidence 466666 3445445444332 23458998876
No 9
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.35 E-value=41 Score=23.14 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=18.6
Q ss_pred CCCcccccc--cCcccccCCCCccce-eccccccc
Q psy8971 60 KSCPWNIAT--KGTVTNDHRGKGRTQ-LSLLPRSL 91 (132)
Q Consensus 60 ~~~~~~~~~--~~~~~~~srGkgRtq-LsllPRaL 91 (132)
....|-+++ +|.+..|.+-+...+ .-||||.+
T Consensus 107 ~~r~wyval~k~G~~r~g~~t~~~~~~~~FLpr~v 141 (157)
T d1ihka_ 107 TGRRYYVALNKDGTPREGTRTKRHQKFTHFLPRPV 141 (157)
T ss_dssp TCCEEECCBCTTSCBCCGGGCCTTSGGGCEEEECC
T ss_pred CCceEEEEECCCCCCcccCccCCCCeeeeeECccC
Confidence 455677777 455655555433322 45899865
No 10
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.93 E-value=55 Score=19.84 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=10.2
Q ss_pred CCChHHHHHhhc
Q psy8971 118 MKSNDDFRNMLL 129 (132)
Q Consensus 118 ~mSN~DFrkmLl 129 (132)
=||.+||.+.|-
T Consensus 32 yLsd~dF~~vFg 43 (67)
T d1yu5x1 32 HLSDEDFKAVFG 43 (67)
T ss_dssp GSCHHHHHHHHS
T ss_pred hCCHHHHHHHHC
Confidence 599999998874
Done!