RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8971
         (132 letters)



>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1,
          membrane protein, heme protein, rieske iron protein,
          cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL
          PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J*
          1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J*
          1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J*
          2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
          Length = 62

 Score = 74.5 bits (183), Expect = 3e-19
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 1  MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
            L   +Y+LLF++TS+F LT+ VGA  FER FD+  D ++E  N+G
Sbjct: 3  PTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 49


>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer
          complex, cytochrome BC1 complex,
          mitochondrialtransmembrane complex; HET: M3L SUC 6PH
          UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
          cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I*
          1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
          Length = 65

 Score = 71.8 bits (176), Expect = 4e-18
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 5  NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +++Y   FK+ + F+ T+  GAF F+  FD      +E+HNKG
Sbjct: 3  SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 45


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.8 bits (71), Expect = 0.032
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 81  RTQLSLLPRSLQVSTPATKPSL 102
           +  L  L  SL++    + P+L
Sbjct: 19  KQALKKLQASLKLYADDSAPAL 40


>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with
           unknown function, STRU genomics, joint center for
           structural genomics; 1.90A {Geobacter sulfurreducens}
          Length = 305

 Score = 26.3 bits (58), Expect = 3.0
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 34  DKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNI 66
           +K+T    E    G +H  +G  L ++   W++
Sbjct: 177 EKITFGQAEERLFGTSHCEVGFALAKR---WSL 206


>3mem_A Putative signal transduction protein; structural genomics, joint
           center for structural genomics, J protein structure
           initiative, PSI-2; HET: MSE; 2.25A {Marinobacter
           aquaeolei}
          Length = 457

 Score = 26.5 bits (58), Expect = 3.0
 Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 3/33 (9%)

Query: 34  DKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNI 66
             +   V E +  G+    + A L++    W +
Sbjct: 341 PHIDSSVIEHYLLGITREQIAAQLMEN---WGM 370


>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, STRU
           genomics, joint center for structural genomics, JCSG;
           2.06A {Shewanella amazonensis SB2B}
          Length = 281

 Score = 26.3 bits (58), Expect = 3.3
 Identities = 4/39 (10%), Positives = 10/39 (25%), Gaps = 3/39 (7%)

Query: 28  AFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNI 66
             E   +  T               +G  +++    W+ 
Sbjct: 167 EAEAHPEMFTTIEHLRSLVRKMQGPIGRAVLKS---WDF 202


>3m1t_A Putative phosphohydrolase; structural genomics, joint center
           structural genomics, JCSG, protein structure initiative,
           PS hydrolase; HET: MSE GOL; 1.62A {Shewanella
           amazonensis}
          Length = 275

 Score = 25.8 bits (57), Expect = 4.2
 Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)

Query: 34  DKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNI 66
           D     + E    G ++  +GA+L Q    W  
Sbjct: 162 DGADRNLMEKELLGYDNAEIGALLAQS---WKF 191


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,784,034
Number of extensions: 86377
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 7
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.2 bits)