RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8971
         (132 letters)



>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 62

 Score = 73.6 bits (181), Expect = 3e-19
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 2  ALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
           L   +Y+LLF++TS+F LT+ VGA  FER FD+  D ++E  N+G
Sbjct: 4  TLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 49


>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase) {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 55

 Score = 70.5 bits (173), Expect = 4e-18
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 5  NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +++Y   FK+ + F+ T+  GAF F+  FD      +E+HNKG
Sbjct: 1  SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 43


>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of
          cytochrome bc1 complex (Ubiquinol-cytochrome c
          reductase) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 33

 Score = 36.7 bits (85), Expect = 3e-05
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 29 FERGFDKLTDYVWESHNKG 47
          FER FD+  D ++E  N+G
Sbjct: 2  FERAFDQGADAIYEHINEG 20


>d1i7na1 c.30.1.5 (A:113-214) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 102

 Score = 23.5 bits (51), Expect = 6.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 118 MKSNDDFRNMLLG 130
           M  N+DFR++++G
Sbjct: 81  MAENEDFRHLVIG 93


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 428,330
Number of extensions: 15802
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 5
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.3 bits)