BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8972
(170 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens
GN=TRAPPC5 PE=1 SV=1
Length = 188
Score = 136 bits (342), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 73/89 (82%)
Query: 6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
FVK +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+ +LNCA F AGIV
Sbjct: 88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147
Query: 66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct: 148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176
>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus
GN=TRAPPC5 PE=2 SV=1
Length = 188
Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 73/89 (82%)
Query: 6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
FVK +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+ +LNCA F AGIV
Sbjct: 88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147
Query: 66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct: 148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176
>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus
GN=Trappc5 PE=1 SV=1
Length = 188
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 73/89 (82%)
Query: 6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
FVK +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+ +LNCA F AGIV
Sbjct: 88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147
Query: 66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct: 148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176
>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus
GN=TRAPPC5 PE=2 SV=1
Length = 188
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 73/89 (82%)
Query: 6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
FVK +W+ +FGKE DKLE+ANDD++TYY+IE+E LVN FISVP++ +LNCA F AG+V
Sbjct: 88 FVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFISVPRENSTLNCAAFTAGLV 147
Query: 66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
EAVL GF + VTAHWHKGTT MI+F+E
Sbjct: 148 EAVLGASGFPAKVTAHWHKGTTLMIKFEE 176
>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium
discoideum GN=trappc5 PE=3 SV=1
Length = 186
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 53/81 (65%)
Query: 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
+ + F+ +WK++FGK D LE++ + + Y + + +VNKFIS+PK SLNCA F
Sbjct: 79 LGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISLPKHLSSLNCAAF 138
Query: 61 VAGIVEAVLNNCGFKSTVTAH 81
VAGI+E +L + F + VTAH
Sbjct: 139 VAGIIEGILCSAEFPARVTAH 159
>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1
Length = 209
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%)
Query: 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
+ + +++ ++WK +FGK D LE++ + Y +++ L+NKFISVPK+ LNC +
Sbjct: 100 LGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159
Query: 61 VAGIVEAVLNNCGFKSTVTAH 81
+AGI+E L++ F +AH
Sbjct: 160 LAGIIEGFLDSAQFPCKASAH 180
>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium
falciparum PE=3 SV=1
Length = 184
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
+ + F+ ++WK +F D L ++ D Y + ++ L+NKFI+VPKD G++NCA F
Sbjct: 77 INILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPKDYGNINCAAF 135
Query: 61 VAGIVEAVLNNCGFKSTVTAH-WHKG-----TTYMIQF 92
AGIVE L + F++ VTAH H+G TT I+F
Sbjct: 136 AAGIVEGFLCSSEFQADVTAHTIHEGDDNYNTTIFIKF 173
>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium
falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1
Length = 184
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
+ + F+ ++WK +F D L ++ D Y + ++ L+NKFI+VPKD G++NCA F
Sbjct: 77 INILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPKDYGNINCAAF 135
Query: 61 VAGIVEAVLNNCGFKSTVTAH-WHKG-----TTYMIQF 92
AGIVE L + F++ VTAH H+G TT I+F
Sbjct: 136 AAGIVEGFLCSSEFQADVTAHTIHEGDDNYNTTIFIKF 173
>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1
SV=1
Length = 283
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
+ + +F+ LW +F D L ++++ + Y +++ + +FI P + +++C F
Sbjct: 177 LDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFI--PGE--NVSCEYF 232
Query: 61 VAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQ 95
V GI++ L N GF VTAH + T Y+IQFD Q
Sbjct: 233 VCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQ 273
>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1
SV=1
Length = 155
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 22 KLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 80
++E+A D +RTY L + + L ++FISVP + L+ V G+++A L G+ S VTA
Sbjct: 76 RVEKARDVDRTYLLTDSDGLFSRFISVPDEWNGLSADSIVCGMIQAALMASGYDSEVTA 134
>sp|Q9Y3M8|STA13_HUMAN StAR-related lipid transfer protein 13 OS=Homo sapiens GN=STARD13
PE=1 SV=2
Length = 1113
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 103 QIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEKL 162
Q +E A W R AG + Q N++A + HDF LE LV P C +L
Sbjct: 56 QEIEAKEACDWLRAAGFPQYAQLYEDSQFPINIVAVKNDHDF---LEKDLVEP--LCRRL 110
Query: 163 NSTTNKC 169
N T NKC
Sbjct: 111 N-TLNKC 116
>sp|Q923Q2|STA13_MOUSE StAR-related lipid transfer protein 13 OS=Mus musculus GN=Stard13
PE=1 SV=5
Length = 1113
Score = 33.5 bits (75), Expect = 0.65, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 103 QIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEKL 162
Q +E A W R AG + Q N+ A HDF LE LV P C +L
Sbjct: 56 QEIEAKEACDWLRAAGFPQYAQLYEDSQFPINIAAVKKDHDF---LERDLVEP--LCRRL 110
Query: 163 NSTTNKC 169
N T NKC
Sbjct: 111 N-TLNKC 116
>sp|Q9TVM2|XPO1_DROME Exportin-1 OS=Drosophila melanogaster GN=emb PE=1 SV=1
Length = 1063
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 82 WHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSG 141
W + + + Q KF ALQI+EE I ++W+ + R C+G ++ +L+ K S
Sbjct: 57 WTRVDSILEYSQNQRTKFYALQILEEVIKTRWK----VLPRNQCEGIKKYVVSLIIKTSS 112
Query: 142 HDFCIILEPPLVRPRGYCEKLN 163
I++E + + Y KLN
Sbjct: 113 DP--IVME----QNKVYLNKLN 128
>sp|Q99394|TRS33_YEAST Trafficking protein particle complex subunit 33 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS33 PE=1
SV=1
Length = 268
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 3 LAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAI--- 59
+ KF+ ++WK IFGK+ D L+ + T+YL++ + + S+ +D + +
Sbjct: 156 IMKFICRDVWKQIFGKQIDNLK--TNHRGTFYLLDYDYRPIQSFSLEEDAKNEELKMIEP 213
Query: 60 ---FVAGIVEAVLNNCGFKS 76
GI+ VL++ G+ S
Sbjct: 214 FLEIPVGIIRGVLSSLGYSS 233
>sp|O29866|DPHB_ARCFU Diphthine synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=dphB PE=1
SV=1
Length = 251
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 9 INLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD----------------K 52
I + FGK +LER++ +E ++ LIE+ + + VP D K
Sbjct: 42 IEEMEEFFGKRVVELERSDLEENSFRLIERAKSKSVVLLVPGDPMVATTHSAIKLEAERK 101
Query: 53 GSLNCAIFVAGIVEAV-----LNNCGFKSTVTAHWHKGTT 87
G I A I AV L+N F + T WH+ T
Sbjct: 102 GVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWHRSQT 141
>sp|Q2YWS3|G6PI_STAAB Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=pgi PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G MI Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMIVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|Q9D289|TPC6B_MOUSE Trafficking protein particle complex subunit 6B OS=Mus musculus
GN=Trappc6b PE=2 SV=1
Length = 158
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCA-- 58
+ + KF+ + W +F K+ D L + + Y L Q++ I + K L A
Sbjct: 62 LDIMKFICKDFWTTVFKKQIDNLR--TNHQGIYVL--QDNKFRLLIQLSAGKQYLEHASK 117
Query: 59 --IFVAGIVEAVLNNCGFKSTVTA 80
F G++ L+N G KS VTA
Sbjct: 118 YLAFTCGLIRGGLSNLGIKSIVTA 141
>sp|Q2FZU0|G6PI_STAA8 Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain NCTC
8325) GN=pgi PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|P99078|G6PI_STAAN Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain
N315) GN=pgi PE=1 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|P64194|G6PI_STAAM Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=pgi PE=1 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|A7X0H6|G6PI_STAA1 Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain Mu3
/ ATCC 700698) GN=pgi PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|Q8NXF1|G6PI_STAAW Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain MW2)
GN=pgi PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|Q6GAW4|G6PI_STAAS Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain
MSSA476) GN=pgi PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|Q6GIC6|G6PI_STAAR Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain
MRSA252) GN=pgi PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|A6QFH3|G6PI_STAAE Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain
Newman) GN=pgi PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|Q5HHC2|G6PI_STAAC Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain COL)
GN=pgi PE=1 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|Q2FIB3|G6PI_STAA3 Glucose-6-phosphate isomerase OS=Staphylococcus aureus (strain
USA300) GN=pgi PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 46 ISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMI----QFDEQEGKFTA 101
I++ KD L+ ++AG +N F+ T+ AH G M+ Q DE+ +
Sbjct: 333 ITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVV 392
Query: 102 LQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPL 152
S ++ G + + +Q + L+ KP D LE L
Sbjct: 393 YFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL 443
>sp|Q86SZ2|TPC6B_HUMAN Trafficking protein particle complex subunit 6B OS=Homo sapiens
GN=TRAPPC6B PE=1 SV=1
Length = 158
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 1 MKLAKFVKINLWKNIFGKECDKLERANDD------ERTYYLIEQESLVNKFISVPKDKGS 54
+ + KF+ + W +F K+ D L R N + + L+ Q S +++ +
Sbjct: 62 LDIMKFICKDFWTTVFKKQIDNL-RTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLA 120
Query: 55 LNCAIFVAGIVEAVLNNCGFKSTVTA 80
C G++ L+N G KS VTA
Sbjct: 121 FTC-----GLIRGGLSNLGIKSIVTA 141
>sp|Q32L78|TPC6B_BOVIN Trafficking protein particle complex subunit 6B OS=Bos taurus
GN=TRAPPC6B PE=2 SV=1
Length = 158
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 1 MKLAKFVKINLWKNIFGKECDKLERANDD------ERTYYLIEQESLVNKFISVPKDKGS 54
+ + KF+ + W +F K+ D L R N + + L+ Q S +++ +
Sbjct: 62 LDIMKFICKDFWTTVFKKQIDNL-RTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLA 120
Query: 55 LNCAIFVAGIVEAVLNNCGFKSTVTA 80
C G++ L+N G KS VTA
Sbjct: 121 FTC-----GLIRGGLSNLGIKSIVTA 141
>sp|Q6FZB1|SYV_BARQU Valine--tRNA ligase OS=Bartonella quintana (strain Toulouse)
GN=valS PE=3 SV=1
Length = 907
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 14/48 (29%)
Query: 105 MEENIASQWR-RGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPP 151
+E+ IA +W RGA K G GA G + FC++L PP
Sbjct: 11 IEQKIAKRWEARGAFKAGMGAKSGTEP-------------FCVMLPPP 45
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,830,665
Number of Sequences: 539616
Number of extensions: 2618480
Number of successful extensions: 5000
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4985
Number of HSP's gapped (non-prelim): 35
length of query: 170
length of database: 191,569,459
effective HSP length: 109
effective length of query: 61
effective length of database: 132,751,315
effective search space: 8097830215
effective search space used: 8097830215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)