Query psy8972
Match_columns 170
No_of_seqs 116 out of 284
Neff 3.5
Searched_HMMs 46136
Date Sat Aug 17 00:25:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00391 transport protein par 100.0 6E-45 1.3E-49 295.3 6.9 100 1-101 60-165 (168)
2 KOG3315|consensus 100.0 2.7E-41 5.9E-46 278.0 5.5 102 1-102 86-188 (191)
3 COG5128 Transport protein part 100.0 3.9E-35 8.5E-40 242.7 3.9 102 1-102 99-206 (208)
4 PF04051 TRAPP: Transport prot 100.0 4.9E-34 1.1E-38 223.0 4.9 92 1-94 55-151 (152)
5 KOG3316|consensus 100.0 2E-32 4.4E-37 221.7 5.2 92 1-94 67-162 (163)
6 KOG3330|consensus 96.7 0.00082 1.8E-08 56.1 2.1 67 28-95 100-173 (183)
7 PF02830 V4R: V4R domain; Int 74.6 4.4 9.6E-05 27.3 3.2 32 59-91 23-61 (62)
8 PF09536 DUF2378: Protein of u 72.2 8 0.00017 31.9 4.8 38 55-92 137-177 (178)
9 TIGR02265 Mxa_TIGR02265 Myxoco 66.6 9.5 0.00021 31.7 4.1 37 56-92 139-178 (179)
10 smart00561 MBT Present in Dros 65.9 4.6 0.0001 30.1 2.0 25 140-164 67-91 (96)
11 KOG4469|consensus 65.1 7.5 0.00016 35.1 3.5 39 79-122 242-280 (391)
12 COG1719 Predicted hydrocarbon 59.2 13 0.00027 29.9 3.5 37 57-93 114-156 (158)
13 PF02820 MBT: mbt repeat; Int 55.5 5.3 0.00012 27.8 0.7 26 139-164 35-60 (73)
14 PF08809 DUF1799: Phage relate 48.1 6.5 0.00014 29.0 0.2 12 109-120 32-43 (83)
15 PF09413 DUF2007: Domain of un 39.0 25 0.00054 23.4 1.9 23 59-81 9-31 (67)
16 PF06153 DUF970: Protein of un 37.1 73 0.0016 24.8 4.5 46 62-108 13-63 (109)
17 PRK14741 spoVM stage V sporula 31.8 29 0.00063 21.1 1.2 14 59-72 10-23 (26)
18 PF11823 DUF3343: Protein of u 31.4 85 0.0018 21.6 3.7 42 65-107 17-61 (73)
19 PF08250 Sperm_act_pep: Sperm- 31.2 23 0.00051 17.3 0.6 7 115-121 4-10 (10)
20 COG1010 CobJ Precorrin-3B meth 30.1 27 0.00058 31.0 1.2 25 137-161 123-147 (249)
21 PF11992 DUF3488: Domain of un 27.5 66 0.0014 28.2 3.2 88 70-157 193-296 (325)
22 TIGR00162 conserved hypothetic 24.4 73 0.0016 26.2 2.7 57 60-116 97-178 (188)
23 smart00460 TGc Transglutaminas 23.0 79 0.0017 20.2 2.2 25 56-81 8-32 (68)
24 TIGR03562 osmo_induc_OsmC pero 22.5 2.9E+02 0.0062 21.5 5.6 66 6-82 1-80 (135)
25 cd02414 jag_KH jag_K homology 22.2 1.6E+02 0.0035 20.4 3.8 30 64-94 3-32 (77)
26 PF01514 YscJ_FliF: Secretory 22.1 1.2E+02 0.0027 25.2 3.7 69 62-133 40-112 (206)
27 PF09967 DUF2201: VWA-like dom 21.6 43 0.00094 25.6 0.8 49 62-121 20-68 (126)
28 COG1882 PflD Pyruvate-formate 21.4 55 0.0012 33.2 1.7 85 66-166 643-740 (755)
29 PF01228 Gly_radical: Glycine 20.3 84 0.0018 23.7 2.1 44 83-138 32-78 (106)
No 1
>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional
Probab=100.00 E-value=6e-45 Score=295.34 Aligned_cols=100 Identities=39% Similarity=0.689 Sum_probs=95.9
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 80 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA 80 (170)
|++|||||++||++|||||||+| |++||+|+|||+||+|++++|||+|+++++++|+||+||||||+|+++||||+|||
T Consensus 60 L~iLkFI~~~~W~~lFgk~aD~L-kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA 138 (168)
T PTZ00391 60 LSILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTA 138 (168)
T ss_pred HHHHHHHHHHHHHHHhCchhhhh-cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999999 56679999999999999999999999999999999999999999999999999999
Q ss_pred Ee------CCCeEEEEEcCcchhchhh
Q psy8972 81 HW------HKGTTYMIQFDEQEGKFTA 101 (170)
Q Consensus 81 h~------~p~TtFlIKF~~~V~~re~ 101 (170)
|+ +.+|||+|||+++|++||+
T Consensus 139 ~~~~~~~~~~~t~~likf~~~v~~Re~ 165 (168)
T PTZ00391 139 HTVEDTPKNFSTTILIKFYPEVIEREK 165 (168)
T ss_pred EeccCCCCCCceEEEEEecHHHHHHHh
Confidence 98 5699999999999999986
No 2
>KOG3315|consensus
Probab=100.00 E-value=2.7e-41 Score=278.04 Aligned_cols=102 Identities=59% Similarity=1.041 Sum_probs=99.3
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 80 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA 80 (170)
|+||+||+.++||+||||.||.|||++++++||||+|++|++|+|||||+|++.+||+||+||||||+|+++||||+|||
T Consensus 86 lgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTA 165 (191)
T KOG3315|consen 86 LGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTA 165 (191)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-CCCeEEEEEcCcchhchhhh
Q psy8972 81 HW-HKGTTYMIQFDEQEGKFTAL 102 (170)
Q Consensus 81 h~-~p~TtFlIKF~~~V~~re~~ 102 (170)
|| |.+|+++|||+++|++||++
T Consensus 166 h~~P~gt~~~IkF~~~Viare~~ 188 (191)
T KOG3315|consen 166 HWHPEGTTYLIKFDESVIAREGL 188 (191)
T ss_pred eecCCCCeEEEEecHHHHhhhhh
Confidence 99 57999999999999999975
No 3
>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.9e-35 Score=242.66 Aligned_cols=102 Identities=29% Similarity=0.632 Sum_probs=98.8
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 80 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA 80 (170)
|++|+|||.++|++|||+.+|.|+||.+.++||||+||+|++++|||||+++.+++|.+|+||||+|+|.++||||+|||
T Consensus 99 l~iLq~ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtA 178 (208)
T COG5128 99 LTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTA 178 (208)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCccee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee------CCCeEEEEEcCcchhchhhh
Q psy8972 81 HW------HKGTTYMIQFDEQEGKFTAL 102 (170)
Q Consensus 81 h~------~p~TtFlIKF~~~V~~re~~ 102 (170)
|. +.+|+|+|+|++.|+.||.+
T Consensus 179 h~~P~~~~p~Rtv~lI~~d~~vi~re~v 206 (208)
T COG5128 179 HPEPSENLPNRTVFLIRIDDLVIAREEV 206 (208)
T ss_pred ccCcccCCCcceEEEEEecHHHHhhhhh
Confidence 97 66999999999999999975
No 4
>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....
Probab=100.00 E-value=4.9e-34 Score=223.02 Aligned_cols=92 Identities=32% Similarity=0.651 Sum_probs=84.9
Q ss_pred CcchhhhhhhhhhhhccccccccccccCC-CceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEe
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDD-ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVT 79 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh-~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VT 79 (170)
+|+|+|||+++|+++||||||+|+ ||| +|+|||+|++|.+++|+|+|++++.++|++|+||||||||+++||+|.||
T Consensus 55 ~~~~~fI~k~~W~~~fgk~~d~l~--~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vt 132 (152)
T PF04051_consen 55 LDILKFICKDFWKMLFGKQADNLK--TNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVT 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHSS--SEEE--EETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCcccc--ccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEE
Confidence 479999999999999999999999 788 99999999999999999999988899999999999999999999999999
Q ss_pred EEe----CCCeEEEEEcCc
Q psy8972 80 AHW----HKGTTYMIQFDE 94 (170)
Q Consensus 80 Ah~----~p~TtFlIKF~~ 94 (170)
||. +|+|+|+|||++
T Consensus 133 a~~~~~~~~~~~f~Ik~~~ 151 (152)
T PF04051_consen 133 AESDPLNGPQTTFQIKFEK 151 (152)
T ss_dssp EEECCCGTTEEEEEEEEEH
T ss_pred EEEeccCCCCeEEEEEEec
Confidence 998 478999999986
No 5
>KOG3316|consensus
Probab=99.97 E-value=2e-32 Score=221.69 Aligned_cols=92 Identities=24% Similarity=0.368 Sum_probs=85.4
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCC--CccccchhHHHHHHHHhcCCCceEE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTV 78 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~--~lncaAF~aGIIeGaL~slGF~a~V 78 (170)
||+|||||+|||+.+|+||+|||| |||+|+|||+||.+.+.+.+|..+++. ...++|||||||||+|++||++|.|
T Consensus 67 LeimKFiCkDfW~~VF~KQiDNLr--TNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siV 144 (163)
T KOG3316|consen 67 LEIMKFICKDFWSIVFKKQIDNLR--TNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIV 144 (163)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcc--ccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEE
Confidence 689999999999999999999999 999999999999999999998666553 4578999999999999999999999
Q ss_pred eEEe--CCCeEEEEEcCc
Q psy8972 79 TAHW--HKGTTYMIQFDE 94 (170)
Q Consensus 79 TAh~--~p~TtFlIKF~~ 94 (170)
||++ .|.|.|+|++.+
T Consensus 145 tA~v~slPtckFhV~v~~ 162 (163)
T KOG3316|consen 145 TASVSSLPTCKFHVQVQP 162 (163)
T ss_pred eeecCCCCceEEEEEecC
Confidence 9999 899999999875
No 6
>KOG3330|consensus
Probab=96.74 E-value=0.00082 Score=56.13 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=53.2
Q ss_pred CCCceEEEE-cCCcceeeccccCCC-CCCccccchhHHHHHHHHhcCCCceEEeEEe-----CCCeEEEEEcCcc
Q psy8972 28 DDERTYYLI-EQESLVNKFISVPKD-KGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQFDEQ 95 (170)
Q Consensus 28 nh~geYmL~-Dn~pl~~kfISvPkd-~~~lncaAF~aGIIeGaL~slGF~a~VTAh~-----~p~TtFlIKF~~~ 95 (170)
.+.++|.|+ |++|+ ..|+..|++ .+++.|.-..||+|||+|...-+.+.|+.-- ...|-+.|+|.+-
T Consensus 100 s~~~efsliLe~NPL-~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~f~r~ 173 (183)
T KOG3330|consen 100 SDGNEFSLILEDNPL-VEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVRFLRI 173 (183)
T ss_pred CCCCEEEEEecCCcH-HHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeeeHHHH
Confidence 456889887 77786 567766655 4578899999999999999999999997654 4459999999653
No 7
>PF02830 V4R: V4R domain; InterPro: IPR004096 Central cellular functions such as metabolism, solute transport and signal transduction are regulated, in part, via binding of small molecules by specialised domains. The 4-vinyl reductase (4VR) domain is a predicted small molecular binding domain, that may bind to hydrocarbons []. Proteins that contain this domain include a regulator of the phenol catabolic pathway and a protein involved in chlorophyll biosynthesis.; PDB: 2OSD_A 2OSO_A.
Probab=74.64 E-value=4.4 Score=27.29 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=22.2
Q ss_pred chhHHHHHHHHhcC-CCceEEeEEe------CCCeEEEEE
Q psy8972 59 IFVAGIVEAVLNNC-GFKSTVTAHW------HKGTTYMIQ 91 (170)
Q Consensus 59 AF~aGIIeGaL~sl-GF~a~VTAh~------~p~TtFlIK 91 (170)
+|.+|++.|+++.+ |-+..|+ ++ .+.|.|.|+
T Consensus 23 ~~~~G~~~G~~~~~~~~~~~v~-E~~C~a~G~~~C~F~i~ 61 (62)
T PF02830_consen 23 WFTAGYLAGFFSALFGKEVEVE-ETKCQAMGDDHCEFVIR 61 (62)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEE-EEE-GGGT-SSEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCceEEE-EeEEEcCCCCeeEEEEE
Confidence 69999999999754 4443432 22 778999886
No 8
>PF09536 DUF2378: Protein of unknown function (DUF2378); InterPro: IPR011751 This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus (strain DK 1622). Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=72.16 E-value=8 Score=31.92 Aligned_cols=38 Identities=24% Similarity=0.401 Sum_probs=30.7
Q ss_pred ccccchhHHHHHHHHhcCCCce-EEeEEe--CCCeEEEEEc
Q psy8972 55 LNCAIFVAGIVEAVLNNCGFKS-TVTAHW--HKGTTYMIQF 92 (170)
Q Consensus 55 lncaAF~aGIIeGaL~slGF~a-~VTAh~--~p~TtFlIKF 92 (170)
....+|.+||++++|...|-+. +|+..- ...|+|.|..
T Consensus 137 ~~~p~f~~G~l~~~L~~~Ga~~~~V~~~~~~~~~~~y~i~W 177 (178)
T PF09536_consen 137 FMPPAFHEGVLEAALEAAGARGPRVRVRERGGDDAEYRIRW 177 (178)
T ss_pred CCChHHHHHHHHHHHHHcCCCCCEEEEEecCCCceEEEEEe
Confidence 3467899999999999999995 775554 7789998864
No 9
>TIGR02265 Mxa_TIGR02265 Myxococcus xanthus paralogous family TIGR02265. This family consists of a set of at least 17 paralogous proteins in Myxococcus xanthus DK 1622. Members are about 200 amino acids in length. No other homologs are known; the function is unknown.
Probab=66.56 E-value=9.5 Score=31.72 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.4
Q ss_pred cccchhHHHHHHHHhcCCCc-eEEe--EEeCCCeEEEEEc
Q psy8972 56 NCAIFVAGIVEAVLNNCGFK-STVT--AHWHKGTTYMIQF 92 (170)
Q Consensus 56 ncaAF~aGIIeGaL~slGF~-a~VT--Ah~~p~TtFlIKF 92 (170)
...+|.+|+++|+|...|=. ..|. +.-...|+|.|..
T Consensus 139 ~~~~f~~G~l~~aLe~~Ga~~~~V~~~~~g~~~~~y~i~W 178 (179)
T TIGR02265 139 MPPAYHEGVLHAALRAVGARDVRVRGRAFGGLDATYRLSW 178 (179)
T ss_pred CchHHHHHHHHHHHHHcCCCCCEEEEEecCCCCceEEEEe
Confidence 34789999999999999933 3554 4447899999864
No 10
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=65.93 E-value=4.6 Score=30.09 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=21.9
Q ss_pred CCceeEEEecCCccCCcchhhhccc
Q psy8972 140 SGHDFCIILEPPLVRPRGYCEKLNS 164 (170)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
+.+||.+-.+-|.++|-|||++-+-
T Consensus 67 ~~~D~W~~~~S~~I~PvGwc~~~g~ 91 (96)
T smart00561 67 DKYDFWCDADSPDIHPVGWCEKNGH 91 (96)
T ss_pred CcCCEEEECCCCCcccCchHHhcCC
Confidence 4589999999999999999998554
No 11
>KOG4469|consensus
Probab=65.08 E-value=7.5 Score=35.09 Aligned_cols=39 Identities=33% Similarity=0.319 Sum_probs=32.2
Q ss_pred eEEeCCCeEEEEEcCcchhchhhhhHhHHHHhhhhhcCCCccCc
Q psy8972 79 TAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGR 122 (170)
Q Consensus 79 TAh~~p~TtFlIKF~~~V~~re~~~~~~~~~~~~~~~~~~~~~~ 122 (170)
|-....+|+-.++|.-+.-..||.| -+-|.|+|||||-.
T Consensus 242 tlnlgegtvaclqfsvslqteervq-----peyqrrrgaggvps 280 (391)
T KOG4469|consen 242 TLNLGEGTVACLQFSVSLQTEERVQ-----PEYQRRRGAGGVPS 280 (391)
T ss_pred eeecCCceEEEEEEEEeechhhhcC-----hHHHhhccCCCCCc
Confidence 3333779999999999998888888 47899999999854
No 12
>COG1719 Predicted hydrocarbon binding protein (contains V4R domain) [General function prediction only]
Probab=59.19 E-value=13 Score=29.91 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=26.7
Q ss_pred ccchhHHHHHHHHhcCCCceEEeEEe------CCCeEEEEEcC
Q psy8972 57 CAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFD 93 (170)
Q Consensus 57 caAF~aGIIeGaL~slGF~a~VTAh~------~p~TtFlIKF~ 93 (170)
--+|.||+|.|+|+...=+-..--++ ...|+|.|+-.
T Consensus 114 vC~~~aG~iag~l~~~~~k~~~v~Et~C~~~G~~~C~F~i~~~ 156 (158)
T COG1719 114 VCHLEAGFIAGFLEEILGKKVEVEETECAAEGDDRCVFEIRLK 156 (158)
T ss_pred chhHHhhHHHHHHHHHhCCCeEEEEEEEeecCCCceEEEEEec
Confidence 35799999999999765444332333 78999999854
No 13
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=55.53 E-value=5.3 Score=27.81 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=21.5
Q ss_pred CCCceeEEEecCCccCCcchhhhccc
Q psy8972 139 PSGHDFCIILEPPLVRPRGYCEKLNS 164 (170)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
++..||.+-.+-|.+.|-|||++-+.
T Consensus 35 ~~~~d~w~~~~S~~i~PvGw~~~~g~ 60 (73)
T PF02820_consen 35 DDDYDFWCHIDSPRIFPVGWCEKNGH 60 (73)
T ss_dssp TGGGEEEEETTSTTEEETTHHHHHT-
T ss_pred CCCccEEEECCCCCeeecchHHhcCC
Confidence 33449999999999999999998654
No 14
>PF08809 DUF1799: Phage related hypothetical protein (DUF1799); InterPro: IPR014915 This entry is represented by the Bacteriophage TLS, TfmB. The characteristics of the protein distribution suggest prophage matches.
Probab=48.13 E-value=6.5 Score=28.99 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=9.7
Q ss_pred HhhhhhcCCCcc
Q psy8972 109 IASQWRRGAGKV 120 (170)
Q Consensus 109 ~~~~~~~~~~~~ 120 (170)
+..|||+|+||.
T Consensus 32 ~~TQWR~g~~g~ 43 (83)
T PF08809_consen 32 MQTQWRVGMGGP 43 (83)
T ss_pred ccccceEcCCcC
Confidence 678999988763
No 15
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=38.99 E-value=25 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=16.1
Q ss_pred chhHHHHHHHHhcCCCceEEeEE
Q psy8972 59 IFVAGIVEAVLNNCGFKSTVTAH 81 (170)
Q Consensus 59 AF~aGIIeGaL~slGF~a~VTAh 81 (170)
.+-|.+|++.|.+.|++|.|.-+
T Consensus 9 ~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 9 PIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp HHHHHHHHHHHHHTT--EE--S-
T ss_pred HHHHHHHHHHHHhCCCcEEEECC
Confidence 56799999999999999998433
No 16
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=37.07 E-value=73 Score=24.80 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCceEEeEEe-----CCCeEEEEEcCcchhchhhhhHhHHH
Q psy8972 62 AGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQFDEQEGKFTALQIMEEN 108 (170)
Q Consensus 62 aGIIeGaL~slGF~a~VTAh~-----~p~TtFlIKF~~~V~~re~~~~~~~~ 108 (170)
+.-+.-+|...||.++--|.. ...|||+|=-+++-++ |.|+|+++|
T Consensus 13 a~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~-~vl~iIk~~ 63 (109)
T PF06153_consen 13 ADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVD-EVLEIIKEN 63 (109)
T ss_dssp HHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHH-HHHHHHHHH
T ss_pred HHHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHH-HHHHHHHHh
Confidence 456777899999999988887 4479999999987765 578888887
No 17
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=31.78 E-value=29 Score=21.10 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.7
Q ss_pred chhHHHHHHHHhcC
Q psy8972 59 IFVAGIVEAVLNNC 72 (170)
Q Consensus 59 AF~aGIIeGaL~sl 72 (170)
-|..|+|+++|.+.
T Consensus 10 kflgg~vra~l~~f 23 (26)
T PRK14741 10 KFLGGIVRAMLGSF 23 (26)
T ss_pred HHHHHHHHHHHHHh
Confidence 38899999999764
No 18
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.37 E-value=85 Score=21.59 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=29.7
Q ss_pred HHHHHhcCCCceEEeEEe---CCCeEEEEEcCcchhchhhhhHhHH
Q psy8972 65 VEAVLNNCGFKSTVTAHW---HKGTTYMIQFDEQEGKFTALQIMEE 107 (170)
Q Consensus 65 IeGaL~slGF~a~VTAh~---~p~TtFlIKF~~~V~~re~~~~~~~ 107 (170)
.+-+|...|+++++..-. ..+|-+-|+|+++-.+ +.++++++
T Consensus 17 ~ek~lk~~gi~~~liP~P~~i~~~CG~al~~~~~d~~-~i~~~l~~ 61 (73)
T PF11823_consen 17 AEKLLKKNGIPVRLIPTPREISAGCGLALRFEPEDLE-KIKEILEE 61 (73)
T ss_pred HHHHHHHCCCcEEEeCCChhccCCCCEEEEEChhhHH-HHHHHHHH
Confidence 456899999999985543 5689999999985433 34444444
No 19
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=31.18 E-value=23 Score=17.32 Aligned_cols=7 Identities=57% Similarity=0.971 Sum_probs=5.2
Q ss_pred cCCCccC
Q psy8972 115 RGAGKVG 121 (170)
Q Consensus 115 ~~~~~~~ 121 (170)
+||||||
T Consensus 4 l~GgGVg 10 (10)
T PF08250_consen 4 LGGGGVG 10 (10)
T ss_pred cccCcCC
Confidence 5788876
No 20
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=30.13 E-value=27 Score=31.03 Aligned_cols=25 Identities=44% Similarity=0.783 Sum_probs=19.8
Q ss_pred cCCCCceeEEEecCCccCCcchhhh
Q psy8972 137 AKPSGHDFCIILEPPLVRPRGYCEK 161 (170)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (170)
.-|-+||||+|-=.-|..|..--||
T Consensus 123 GAPL~hDF~~ISLSDlLtPwe~Iek 147 (249)
T COG1010 123 GAPLGHDFCVISLSDLLTPWEVIEK 147 (249)
T ss_pred CCCcccceEEEEhHhcCCcHHHHHH
Confidence 3589999999987888888766554
No 21
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=27.53 E-value=66 Score=28.21 Aligned_cols=88 Identities=17% Similarity=0.403 Sum_probs=62.8
Q ss_pred hcCCCceEEeEEe------CCCeEEEEEcCcchhchhhh----hHhHHHHhhhhhcCCCc---cCc--c-cccccccccc
Q psy8972 70 NNCGFKSTVTAHW------HKGTTYMIQFDEQEGKFTAL----QIMEENIASQWRRGAGK---VGR--G-ACKGNQQLNY 133 (170)
Q Consensus 70 ~slGF~a~VTAh~------~p~TtFlIKF~~~V~~re~~----~~~~~~~~~~~~~~~~~---~~~--~-~~~~~~~~~~ 133 (170)
...||.-+|+--. .+..+|-++|++.+-.++.+ -.|++-=-+.|+.+... ... . .=...+.++|
T Consensus 193 a~TG~Sd~m~pG~i~~L~~s~~~afRv~f~~~~P~~~~lYWRg~Vl~~fdG~~W~~~~~~~~~~~~~~~~~~~~~~~~~y 272 (325)
T PF11992_consen 193 ATTGFSDSMSPGDISELAQSDEVAFRVEFDGAPPPPSELYWRGLVLDRFDGRRWRRSPQQSDAPPPARPEPQSSGQRVRY 272 (325)
T ss_pred CCCCCCCCcCCccchhhhcCCceEEEEEeCCCCCCcCCceEEEEeeeccCCCcceeCCCcccccCcccCCcccCCCceeE
Confidence 4568888886532 67899999999997666655 45666667888888311 111 1 1135678899
Q ss_pred eeccCCCCceeEEEecCCccCCcc
Q psy8972 134 NLMAKPSGHDFCIILEPPLVRPRG 157 (170)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
.+..-|+++..-..||-|..-+.+
T Consensus 273 ~I~lEP~~~~~Lf~Ld~p~~~~~~ 296 (325)
T PF11992_consen 273 TIILEPTGQRWLFALDYPVALDEG 296 (325)
T ss_pred EEEEccCCCCeEEEeCCcccCCcc
Confidence 999999999999999988766633
No 22
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=24.45 E-value=73 Score=26.22 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=36.5
Q ss_pred hhHHHHHHHHhcCCCceEE-eEEeCC---------------CeEEEEEcCcchhchh---------hhhHhHHHHhhhhh
Q psy8972 60 FVAGIVEAVLNNCGFKSTV-TAHWHK---------------GTTYMIQFDEQEGKFT---------ALQIMEENIASQWR 114 (170)
Q Consensus 60 F~aGIIeGaL~slGF~a~V-TAh~~p---------------~TtFlIKF~~~V~~re---------~~~~~~~~~~~~~~ 114 (170)
=++|++.+.+.--|+++.. .+|++. .-.+-++++-+-++.+ .+|.|+|++.+|||
T Consensus 97 G~~glLl~~a~~~gi~ai~L~~e~p~y~pDP~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~~~~~~~~~~~~~~~~~~ 176 (188)
T TIGR00162 97 GASGLLLGVSELEGIPGACLMGETPGYMIDPKAAKAVLEVLCKMLSLEVSVEALEERAKEMEKIIAKIKEMEEEMVQQWK 176 (188)
T ss_pred cHHHHHHHHHHHCCCCeEEEEEeCCCCCCChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4588999999999999975 666511 1223445554444443 35667778778887
Q ss_pred cC
Q psy8972 115 RG 116 (170)
Q Consensus 115 ~~ 116 (170)
-+
T Consensus 177 ~~ 178 (188)
T TIGR00162 177 AK 178 (188)
T ss_pred CC
Confidence 43
No 23
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=23.03 E-value=79 Score=20.25 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=18.5
Q ss_pred cccchhHHHHHHHHhcCCCceEEeEE
Q psy8972 56 NCAIFVAGIVEAVLNNCGFKSTVTAH 81 (170)
Q Consensus 56 ncaAF~aGIIeGaL~slGF~a~VTAh 81 (170)
.|..+ |-+...+|.++|+||++.--
T Consensus 8 ~C~~~-a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 8 TCGEF-AALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eeHHH-HHHHHHHHHHCCCCeEEEee
Confidence 35555 56677799999999998533
No 24
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=22.52 E-value=2.9e+02 Score=21.49 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=34.4
Q ss_pred hhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCC---cccc--------chhHHHHHHHHhcCCC
Q psy8972 6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGS---LNCA--------IFVAGIVEAVLNNCGF 74 (170)
Q Consensus 6 FIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~---lnca--------AF~aGIIeGaL~slGF 74 (170)
|=++..|+--|.+..-.. ...|..+ +.--+|.|++|+. .|+. +=.+.-++-++...|+
T Consensus 1 ~~~~~~~~~~~~~~~G~v----------~~~~g~~-~~~~~s~p~~~~~~~G~nPeeLLlaAlaaC~~~t~~~ia~k~~~ 69 (135)
T TIGR03562 1 RTASAVWEGDLKEGKGTI----------STQSGAL-SETPYSFKTRFEDGPGTNPEELIAAAHAGCFSMALSAALAEAGF 69 (135)
T ss_pred CceEEEecCCCccCceEE----------EeCCCce-eccccccCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 335667766554443333 2333322 1445778877742 3321 2223556778888888
Q ss_pred ce---EEeEEe
Q psy8972 75 KS---TVTAHW 82 (170)
Q Consensus 75 ~a---~VTAh~ 82 (170)
+- .|.++.
T Consensus 70 ~~~~~~v~a~~ 80 (135)
T TIGR03562 70 TPESLDTTATV 80 (135)
T ss_pred CCceeEEEEEE
Confidence 43 455443
No 25
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.25 E-value=1.6e+02 Score=20.43 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=20.8
Q ss_pred HHHHHHhcCCCceEEeEEeCCCeEEEEEcCc
Q psy8972 64 IVEAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94 (170)
Q Consensus 64 IIeGaL~slGF~a~VTAh~~p~TtFlIKF~~ 94 (170)
.++.+|..+|+++.|+.... .-.+.+.++.
T Consensus 3 ~L~~il~~mg~~~~v~~~~~-~~~i~i~i~~ 32 (77)
T cd02414 3 FLEEVLELMGIEADVDVEEE-GDTVEVNISG 32 (77)
T ss_pred HHHHHHHHcCCCcEEEEEec-CCEEEEEEec
Confidence 47889999999999987762 2234444444
No 26
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=22.12 E-value=1.2e+02 Score=25.16 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCCceEEeEEeCCCeEEEEEcCcchhchhhhhHhHHHHhhhhhcCCC----ccCcccccccccccc
Q psy8972 62 AGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAG----KVGRGACKGNQQLNY 133 (170)
Q Consensus 62 aGIIeGaL~slGF~a~VTAh~~p~TtFlIKF~~~V~~re~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 133 (170)
++=|...|+..|++++++.. +.++-|.-+++-..|-|+...++++-+....|-+ +.|.|.=.--++.+|
T Consensus 40 a~~i~~~L~~~gI~y~~~~~---g~~~~I~Vp~~~~~~ar~~La~~glp~~~~~g~~~~~~~~~~~~T~~~~~~~~ 112 (206)
T PF01514_consen 40 ANEIVAALDENGIPYKLSDD---GGTWTILVPEDQVARARMLLASQGLPKSGFSGFEELFDNSSFGTTDFEEKVNY 112 (206)
T ss_dssp HHHHHHHHHHTT--EEEEE----TTSEEEEEEGGGHHHHHHHHHHTT-S------CCHHTTT-S---SHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcEecCC---CCeeEEEeCHHHHHHHHHHHHHcCCCCCCCCCHHHHhccCCCCCCHHHHHHHH
Confidence 78899999999999999876 3338888899999999999999988887766552 233344334444554
No 27
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=21.59 E-value=43 Score=25.57 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCceEEeEEeCCCeEEEEEcCcchhchhhhhHhHHHHhhhhhcCCCccC
Q psy8972 62 AGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVG 121 (170)
Q Consensus 62 aGIIeGaL~slGF~a~VTAh~~p~TtFlIKF~~~V~~re~~~~~~~~~~~~~~~~~~~~~ 121 (170)
.+-|.+++...+. .+-+|.||.+|-+-..++-++.++..=+..|+||.=
T Consensus 20 l~ev~~i~~~~~~-----------~v~vi~~D~~v~~~~~~~~~~~~~~~~~~~GgGGTd 68 (126)
T PF09967_consen 20 LSEVAGILRRFPA-----------EVHVIQFDAEVQDVQVFRSLEDELRDIKLKGGGGTD 68 (126)
T ss_pred HHHHHHHHHhCCC-----------CEEEEEECCEeeeeeEEecccccccccccCCCCCCc
Confidence 3556666666532 234567777777766666666666665666777653
No 28
>COG1882 PflD Pyruvate-formate lyase [Energy production and conversion]
Probab=21.42 E-value=55 Score=33.19 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=58.9
Q ss_pred HHHHhcCCCceEEeEEe-CCCeEEEEEcCcchhchhhhhH---hHHHHhhhhhcCCCccCcccccccccccceecc----
Q psy8972 66 EAVLNNCGFKSTVTAHW-HKGTTYMIQFDEQEGKFTALQI---MEENIASQWRRGAGKVGRGACKGNQQLNYNLMA---- 137 (170)
Q Consensus 66 eGaL~slGF~a~VTAh~-~p~TtFlIKF~~~V~~re~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 137 (170)
.|+++++..-+++-++. ..+..+-+++.|..+.+|.=.. +.+=++.=-.+|+ -|+||||.|.
T Consensus 643 ~G~~a~L~SvaKLp~~~~~~Gislt~~i~P~~Lgk~~d~~~~~L~~lLd~~f~~~~----------g~HlqvNV~~retL 712 (755)
T COG1882 643 KGPTAVLNSVAKLPFAYAKDGISLTFKIVPAALGKEEDEQKSNLVALLDGYFERGA----------GQHLQVNVLNRETL 712 (755)
T ss_pred cchHHHHHHHhccchhhcCCCceEEEEeChhhhccchhHHHHHHHHHHHHHHhhcC----------ceEEEEEecCHHHH
Confidence 57778888878875544 8899999999999998876332 4444554555555 4899999873
Q ss_pred -----CCCCceeEEEecCCccCCcchhhhccccc
Q psy8972 138 -----KPSGHDFCIILEPPLVRPRGYCEKLNSTT 166 (170)
Q Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (170)
-|.-++ .=.||-.|||.-.+.-|
T Consensus 713 ldA~~~PE~y~------~L~VRVsGys~~F~~Lt 740 (755)
T COG1882 713 LDAQEHPEKYP------DLIVRVSGYSAFFVALT 740 (755)
T ss_pred HHHHhCccccC------CeEEEEeceehhHHhcC
Confidence 233332 22479999999877644
No 29
>PF01228 Gly_radical: Glycine radical; InterPro: IPR001150 Synonym(s):Pyruvate formate-lyase Escherichia coli Formate C-acetyltransferase (2.3.1.54 from EC) (genes pflB and pflD) is a key enzyme of anaerobic glucose metabolism, it converts pyruvate and CoA into acetyl-CoA and pyruvate. This enzyme is posttranslationally interconverted, under anaerobic conditions, from an inactive to an active form that carries a stable radical localized to a specific glycine at the C terminus []. Such a glycine radical seems [] also to be present in E. coli (gene nrdD) and Bacteriophage T4 (gene nrdD or sunY) anaerobic ribonucleoside-triphosphate reductase (1.17.4.2 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1MZO_B 3PFL_B 1H18_A 2PFL_A 1CM5_B 1H16_A 1H17_A 1R9E_A 1R8W_A 1R9D_A ....
Probab=20.34 E-value=84 Score=23.67 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCcchh---chhhhhHhHHHHhhhhhcCCCccCcccccccccccceeccC
Q psy8972 83 HKGTTYMIQFDEQEG---KFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAK 138 (170)
Q Consensus 83 ~p~TtFlIKF~~~V~---~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (170)
.+++.+.|||.++++ ..|-++.+..=|+. .+.|.+++++|.+.+
T Consensus 32 ~~g~~~n~~~~p~~~~~~~~~~~~~l~~~i~~------------~~~gg~~iq~Nvv~~ 78 (106)
T PF01228_consen 32 TNGMLLNIKFSPSVLGKAGEEGYEKLNSLIRT------------YFNGGQHIQFNVVDR 78 (106)
T ss_dssp TTEE--EEEEEHHHH-SSHHHHHHHHHHHHHH------------HHTT-SEEEEEES-H
T ss_pred cCCeeeeeeEChHHHhhcchhHHHHHHHHHHH------------HhccCceeEEEecCH
Confidence 789999999999999 44445555555544 345678999998754
Done!