Query psy8972
Match_columns 170
No_of_seqs 116 out of 284
Neff 3.5
Searched_HMMs 29240
Date Sat Aug 17 00:26:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_B ZGC 92866, trafficking 100.0 1.8E-40 6.3E-45 270.5 6.6 102 1-102 83-184 (188)
2 2c0j_B R32611_2; palmitate; HE 100.0 4E-36 1.4E-40 238.7 6.5 92 1-94 64-159 (160)
3 2bjn_A TPC6, trafficking prote 100.0 7.4E-35 2.5E-39 231.1 6.0 92 1-94 64-159 (160)
4 3cue_B Transport protein parti 100.0 5.3E-35 1.8E-39 252.3 3.7 99 1-103 177-281 (283)
5 1sz7_A BET3 homolog, trafficki 100.0 3.9E-32 1.3E-36 224.0 6.3 94 1-98 81-182 (200)
6 3cue_D Transport protein parti 100.0 6.7E-32 2.3E-36 220.8 4.5 94 1-98 84-186 (193)
7 3tfg_A ALR2278 protein; heme-b 56.6 14 0.00049 28.7 4.6 38 57-96 141-185 (189)
8 1wjr_A KIAA1617 protein; MBT d 53.8 7.3 0.00025 29.5 2.4 38 127-164 40-77 (127)
9 2biv_A SCML2 protein, sex COMB 50.8 6.9 0.00023 32.5 2.0 25 139-163 101-125 (243)
10 2kii_A Putative uncharacterize 49.6 38 0.0013 26.1 6.0 38 57-94 138-180 (181)
11 3ut1_A Lethal(3)malignant brai 44.8 7.5 0.00026 33.5 1.3 24 140-163 76-99 (324)
12 1oz2_A Lethal(3)malignant brai 41.8 9.1 0.00031 33.0 1.4 25 140-164 81-105 (331)
13 2r58_A Polycomb protein SCM; M 41.1 11 0.00038 31.7 1.8 24 140-163 74-97 (265)
14 1baz_A ARC repressor; transcri 35.1 31 0.0011 22.0 2.8 33 85-117 7-53 (53)
15 1chl_A Chlorotoxin; neurotoxin 34.2 12 0.00043 23.4 0.8 22 110-131 13-34 (36)
16 3f70_A Lethal(3)malignant brai 30.6 16 0.00056 32.9 1.3 23 139-161 300-323 (456)
17 3sj5_A Methyl-accepting chemot 28.6 40 0.0014 26.2 3.1 41 57-97 137-183 (188)
18 2oso_A Hypothetical protein MJ 28.2 40 0.0014 25.7 3.0 39 57-95 116-160 (163)
19 2ius_A DNA translocase FTSK; n 27.7 1.1E+02 0.0036 27.8 6.0 57 58-115 44-102 (512)
20 2vqg_A Uncharacterized protein 25.4 30 0.001 25.8 1.7 20 56-75 16-35 (99)
21 1wjq_A KIAA1798 protein; MBT d 25.1 19 0.00067 26.7 0.6 23 141-163 54-76 (107)
22 3fgr_A Putative phospholipase 22.2 30 0.001 27.8 1.2 14 58-71 73-86 (202)
23 3p8d_A Medulloblastoma antigen 20.5 29 0.00098 23.9 0.7 27 70-97 19-45 (67)
No 1
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=100.00 E-value=1.8e-40 Score=270.49 Aligned_cols=102 Identities=56% Similarity=1.017 Sum_probs=99.2
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 80 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA 80 (170)
+|+|+|||+++||.+||||+|+|++||||+|+|||+||+|++++|+|+|+++++++|++|+||||||||+++||+|+|||
T Consensus 83 ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta 162 (188)
T 2j3w_B 83 LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTV 162 (188)
T ss_dssp HHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEEcCcchhchhhh
Q psy8972 81 HWHKGTTYMIQFDEQEGKFTAL 102 (170)
Q Consensus 81 h~~p~TtFlIKF~~~V~~re~~ 102 (170)
|++|+|+|+|||+++|++||++
T Consensus 163 ~~~~~t~f~Ikf~~~v~~re~~ 184 (188)
T 2j3w_B 163 HWHKGTTLMIKFDESVIARDKA 184 (188)
T ss_dssp EESSSEEEEEEECHHHHHHHHH
T ss_pred EeCCCEEEEEEecHHHHHHHHh
Confidence 9999999999999999888875
No 2
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=100.00 E-value=4e-36 Score=238.70 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=85.2
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCC--CccccchhHHHHHHHHhcCCCceEE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTV 78 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~--~lncaAF~aGIIeGaL~slGF~a~V 78 (170)
+|+|+||||++||.+||||||+|+ |||+|+|||+||+|.+++|+|+|+++. .++|++|+||||||+|+++||+|+|
T Consensus 64 ld~l~fI~k~~Wk~~fgk~~d~L~--t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~V 141 (160)
T 2c0j_B 64 LDVLKFLCKDLWVAVFQKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVV 141 (160)
T ss_dssp HHHHHHHHTHHHHHHHSSCCSEEE--ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHHHHHHhCCcCccce--eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEE
Confidence 579999999999999999999999 899999999999999999999999998 8999999999999999999999999
Q ss_pred eEEe--CCCeEEEEEcCc
Q psy8972 79 TAHW--HKGTTYMIQFDE 94 (170)
Q Consensus 79 TAh~--~p~TtFlIKF~~ 94 (170)
|||+ .|+|+|+|||.+
T Consensus 142 ta~~~~~p~~~f~i~~~~ 159 (160)
T 2c0j_B 142 TASVAALPVCKFQVVIPK 159 (160)
T ss_dssp EEEESSTTCEEEEEECCC
T ss_pred EEeecCCCceEEEEEeec
Confidence 9999 899999999976
No 3
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=100.00 E-value=7.4e-35 Score=231.13 Aligned_cols=92 Identities=23% Similarity=0.408 Sum_probs=81.6
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCC--CccccchhHHHHHHHHhcCCCceEE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTV 78 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~--~lncaAF~aGIIeGaL~slGF~a~V 78 (170)
+|+|+|||+++|+.+||||||+|+ |||+|+|||+||+|.+++|+|+|+++. .++|++|+||||||+|+++||+|+|
T Consensus 64 ld~lkfI~k~~Wk~~fgk~~d~L~--t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~V 141 (160)
T 2bjn_A 64 LDIMKFICKDFWTTVFKKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIV 141 (160)
T ss_dssp HHHHHHHHTHHHHHHHSSCCSEEE--EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCcccc--cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEE
Confidence 479999999999999999999998 899999999999999999999999985 7999999999999999999999999
Q ss_pred eEEe--CCCeEEEEEcCc
Q psy8972 79 TAHW--HKGTTYMIQFDE 94 (170)
Q Consensus 79 TAh~--~p~TtFlIKF~~ 94 (170)
|||+ .|+|+|+||+.+
T Consensus 142 ta~~~~~p~~~F~i~~~~ 159 (160)
T 2bjn_A 142 TAEVSSMPACKFQVMIQK 159 (160)
T ss_dssp EEEESSTTCEEEEEEEC-
T ss_pred EEEecCCCceEEEEEecc
Confidence 9999 799999999875
No 4
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-35 Score=252.30 Aligned_cols=99 Identities=30% Similarity=0.614 Sum_probs=92.5
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 80 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA 80 (170)
+|+|+|||+++||.+||||||+|+|.++++|+|||+||+|++++|+|++ +++|++|+||||||||+++||+|+|||
T Consensus 177 ldilkFIcK~~Wk~lFgKqaD~Lektn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA 252 (283)
T 3cue_B 177 LDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTA 252 (283)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSEEEECSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEE
T ss_pred HHHHHHHHHHHHHHHhCCCcchhccccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEE
Confidence 5899999999999999999999987777789999999999999999973 689999999999999999999999999
Q ss_pred Ee------CCCeEEEEEcCcchhchhhhh
Q psy8972 81 HW------HKGTTYMIQFDEQEGKFTALQ 103 (170)
Q Consensus 81 h~------~p~TtFlIKF~~~V~~re~~~ 103 (170)
|+ +++|+|+|||+++|++||+|.
T Consensus 253 ~~~p~~~~~~~T~~~IkF~~~v~~Re~~r 281 (283)
T 3cue_B 253 HRMPQGGHSQRTVYLIQFDRQVLDREGLR 281 (283)
T ss_dssp ECCCCSSCTTCEEEECCCCHHHHHHHHHC
T ss_pred EEcccccCCCceEEEEEecHHHHhhhhhh
Confidence 98 358999999999999999985
No 5
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=99.97 E-value=3.9e-32 Score=223.96 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=87.4
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEE-EcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEe
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVT 79 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL-~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VT 79 (170)
+|+|+|||+++||.+||||+|+|++ |||+++||| +|++|+.+ |+|+|++++.++|++|+||||||||+++||+ ||
T Consensus 81 le~l~fI~k~~Wk~lFgk~ad~L~~-t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vt 156 (200)
T 1sz7_A 81 RETADVIAKVAFKMYLGITPSITNW-SPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VE 156 (200)
T ss_dssp HHHHHHHHHTHHHHHHSCCCEEECC-CTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EE
T ss_pred HHHHHHHHHHHHHHHhCCCCcccee-cCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EE
Confidence 4799999999999999999999997 899999999 89999988 9999999999999999999999999999999 88
Q ss_pred EEe-------CCCeEEEEEcCcchhc
Q psy8972 80 AHW-------HKGTTYMIQFDEQEGK 98 (170)
Q Consensus 80 Ah~-------~p~TtFlIKF~~~V~~ 98 (170)
||+ .++|+|+|||+++|.+
T Consensus 157 a~~~~d~l~g~~~t~~~Ikf~~~v~~ 182 (200)
T 1sz7_A 157 AKFVQDTLKGDGVTEIRMRFIRRIED 182 (200)
T ss_dssp EEEEECGGGTCSSEEEEEEEEEEC--
T ss_pred EEEEecccCCCCCEEEEEEEhhhhhh
Confidence 887 3689999999999843
No 6
>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.7e-32 Score=220.79 Aligned_cols=94 Identities=14% Similarity=0.284 Sum_probs=87.4
Q ss_pred CcchhhhhhhhhhhhccccccccccccCCCceEEE-EcCCcceeeccccCCCC-CCccccchhHHHHHHHHhcCCCceEE
Q psy8972 1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYL-IEQESLVNKFISVPKDK-GSLNCAIFVAGIVEAVLNNCGFKSTV 78 (170)
Q Consensus 1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL-~Dn~pl~~kfISvPkd~-~~lncaAF~aGIIeGaL~slGF~a~V 78 (170)
+|+|+|||+++||.+||||+|+|++ |||+++||| +|++|+.+ |+|+|+++ +.++|++|+||||||||+++|| +|
T Consensus 84 le~l~fI~k~~Wk~lfgk~~d~L~~-t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~V 159 (193)
T 3cue_D 84 VKTSEVLSKCAFKIFLNITPNITNW-SHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DC 159 (193)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCCBCC-CTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CC
T ss_pred HHHHHHHHHHHHHHHhCCCCcccee-cCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EE
Confidence 4799999999999999999999987 899999999 99999988 99999999 7899999999999999999999 78
Q ss_pred eEEe-------CCCeEEEEEcCcchhc
Q psy8972 79 TAHW-------HKGTTYMIQFDEQEGK 98 (170)
Q Consensus 79 TAh~-------~p~TtFlIKF~~~V~~ 98 (170)
|||+ .++|+|+|||+++|.+
T Consensus 160 ta~~~~d~l~g~~~t~~~Ikf~~~v~d 186 (193)
T 3cue_D 160 DVWFVSDILRGDSQTEIKVKLNRILKD 186 (193)
T ss_dssp EEEECCCSSSSSSCBCEEEECCCCCSC
T ss_pred EEEEeeccCCCCCCEEEEEEEhhhhhc
Confidence 8887 3479999999999854
No 7
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=56.55 E-value=14 Score=28.69 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=27.7
Q ss_pred ccchhHHHHHHHHhcCCCceEEeEEe-------CCCeEEEEEcCcch
Q psy8972 57 CAIFVAGIVEAVLNNCGFKSTVTAHW-------HKGTTYMIQFDEQE 96 (170)
Q Consensus 57 caAF~aGIIeGaL~slGF~a~VTAh~-------~p~TtFlIKF~~~V 96 (170)
...|+-|+|+|+-+. |...|+-+. ...++|.|+++++-
T Consensus 141 l~~~~~Gli~~~A~~--f~~~v~i~~~~~~~~~~~h~~f~i~~~~~~ 185 (189)
T 3tfg_A 141 LAPMVLGLLHGLGKR--FQTKVEVTQTAFRETGEDHDIFSIKYEDSN 185 (189)
T ss_dssp CHHHHHHHHHHHHHH--TTCEEEEEEEECTTTTSSSEEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHH--hCCCeEEEEEeccCCCCCeEEEEEEECCCC
Confidence 567999999999997 555554444 34689999998763
No 8
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=53.76 E-value=7.3 Score=29.48 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=28.0
Q ss_pred ccccccceeccCCCCceeEEEecCCccCCcchhhhccc
Q psy8972 127 GNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEKLNS 164 (170)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
+.-.|.|.=....+.+||-+-.+.|-+.|-|||++-+-
T Consensus 40 ~rl~l~~dG~~~~~~~D~W~~~~s~~I~PvGWc~~~g~ 77 (127)
T 1wjr_A 40 GRLRLRYVGLEDTESYDQWLFYLDYRLRPVGWCQENKY 77 (127)
T ss_dssp TEEEECBTTCSSCCSSCEEEETTCSSCBCTTTHHHHCC
T ss_pred CEEEEEecCCCCCCCCCEeEeCCCCCccccCcHHhhCC
Confidence 33445554444445789999999999999999998653
No 9
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=50.84 E-value=6.9 Score=32.50 Aligned_cols=25 Identities=32% Similarity=0.678 Sum_probs=21.8
Q ss_pred CCCceeEEEecCCccCCcchhhhcc
Q psy8972 139 PSGHDFCIILEPPLVRPRGYCEKLN 163 (170)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
.+.+||++-.+.|.+.|-||||+-+
T Consensus 101 d~~~DfW~~~~S~~I~PvGwc~~~g 125 (243)
T 2biv_A 101 DNRNDFWRLVDSPDIQPVGTCEKEG 125 (243)
T ss_dssp CSSSCEEEETTCTTEECTTHHHHTT
T ss_pred CCCCCEeecCCCCccccChhHHhcC
Confidence 3558999999999999999999854
No 10
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=49.61 E-value=38 Score=26.08 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=30.3
Q ss_pred ccchhHHHHHHHHhcCCCceEEeEEe-----CCCeEEEEEcCc
Q psy8972 57 CAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQFDE 94 (170)
Q Consensus 57 caAF~aGIIeGaL~slGF~a~VTAh~-----~p~TtFlIKF~~ 94 (170)
...|+-|+|+|+-+.+|-+.+|+-.. ...++|.|+|+.
T Consensus 138 l~~~~~Gli~~~A~~f~~~v~i~~~~~~~~~~~h~~f~i~~~~ 180 (181)
T 2kii_A 138 LCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN 180 (181)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEEECGGGTCSSEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEEeeccCCCCEEEEEEEecC
Confidence 56799999999999998877776321 457899999875
No 11
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=44.80 E-value=7.5 Score=33.53 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.6
Q ss_pred CCceeEEEecCCccCCcchhhhcc
Q psy8972 140 SGHDFCIILEPPLVRPRGYCEKLN 163 (170)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
+.+||++-.+-|.+.|-|||++-+
T Consensus 76 ~~~dFW~~~~S~~IhPvGwc~~~g 99 (324)
T 3ut1_A 76 DCYDFWVNADALDIHPVGWCEKTG 99 (324)
T ss_dssp GGGCEEEETTCSSEECTTHHHHHT
T ss_pred CCCCEEEeCCCCCeeccchhHhcC
Confidence 458999999999999999999854
No 12
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=41.85 E-value=9.1 Score=32.97 Aligned_cols=25 Identities=32% Similarity=0.603 Sum_probs=22.3
Q ss_pred CCceeEEEecCCccCCcchhhhccc
Q psy8972 140 SGHDFCIILEPPLVRPRGYCEKLNS 164 (170)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (170)
+.+||++-.+-|.+.|-|||++-+.
T Consensus 81 ~~~dFW~~~~S~~IhPvGwc~~~g~ 105 (331)
T 1oz2_A 81 ECHDFWVNANSPDIHPAGWFEKTGH 105 (331)
T ss_dssp GGGCEEEETTCTTEECTTHHHHHTC
T ss_pred CCCCEEEcCCCCCcccCchHHhcCC
Confidence 4689999999999999999998654
No 13
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=41.11 E-value=11 Score=31.75 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.3
Q ss_pred CCceeEEEecCCccCCcchhhhcc
Q psy8972 140 SGHDFCIILEPPLVRPRGYCEKLN 163 (170)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
+.+||.+-.+.|.+.|-||||+-+
T Consensus 74 ~~~DfW~~~~S~~I~PvGwc~~~g 97 (265)
T 2r58_A 74 SQNDFWRLVDSTEIHAIGHCEKNG 97 (265)
T ss_dssp SSCCEEEETTCTTEECTTHHHHTT
T ss_pred CcCCEeEeCCCCCeeccccHHhcC
Confidence 468999999999999999999754
No 14
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=35.07 E-value=31 Score=22.00 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=23.3
Q ss_pred CeEEEEEcCcchhchh--------------hhhHhHHHHhhhhhcCC
Q psy8972 85 GTTYMIQFDEQEGKFT--------------ALQIMEENIASQWRRGA 117 (170)
Q Consensus 85 ~TtFlIKF~~~V~~re--------------~~~~~~~~~~~~~~~~~ 117 (170)
...|.|++++++.++= -.+++++.++++.|+||
T Consensus 7 ~~~~~lRlp~eL~~~l~~~A~~~grS~N~~i~~~L~~~l~~~~r~~~ 53 (53)
T 1baz_A 7 MPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA 53 (53)
T ss_dssp SCEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCeeEEECCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccccCC
Confidence 4579999999886653 23456677777777765
No 15
>1chl_A Chlorotoxin; neurotoxin; NMR {Leiurus quinquestriatus} SCOP: g.3.7.2 PDB: 1sis_A
Probab=34.16 E-value=12 Score=23.37 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=14.9
Q ss_pred hhhhhcCCCccCcccccccccc
Q psy8972 110 ASQWRRGAGKVGRGACKGNQQL 131 (170)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~ 131 (170)
+++=|-=-||-|||-|.|-|=|
T Consensus 13 ~~kC~~CCGg~~~GkC~G~qCl 34 (36)
T 1chl_A 13 ARKCDDCCGGKGRGKCYGPQCL 34 (36)
T ss_dssp HHHHHHHHTSSSSCEEETTEEE
T ss_pred HHHHHHHhCCCCCCeEeCCeee
Confidence 4444444577889999998743
No 16
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=30.55 E-value=16 Score=32.90 Aligned_cols=23 Identities=30% Similarity=0.725 Sum_probs=0.0
Q ss_pred CCCce-eEEEecCCccCCcchhhh
Q psy8972 139 PSGHD-FCIILEPPLVRPRGYCEK 161 (170)
Q Consensus 139 ~~~~~-~~~~~~~~~~~~~~~~~~ 161 (170)
+.+.| ||+-.+-|.+.|-|||||
T Consensus 300 ~~~~d~f~~h~~Sp~I~PVGwce~ 323 (456)
T 3f70_A 300 TDGLDWFCYHASSHAIFPATFCQK 323 (456)
T ss_dssp ----CCEEEETTCTTEECTTHHHH
T ss_pred cCCCCcEEEeCCCCCccccchHHH
No 17
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=28.63 E-value=40 Score=26.24 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=31.5
Q ss_pred ccchhHHHHHHHHhcCCCceEEeEEe------CCCeEEEEEcCcchh
Q psy8972 57 CAIFVAGIVEAVLNNCGFKSTVTAHW------HKGTTYMIQFDEQEG 97 (170)
Q Consensus 57 caAF~aGIIeGaL~slGF~a~VTAh~------~p~TtFlIKF~~~V~ 97 (170)
...|+.|+|+|+-+-.|-+.+|+-.- ....+|.|+|+...-
T Consensus 137 l~~~~~Gli~~aa~~f~~~v~i~~~~~~~~~~~~~~~~rl~f~~~~~ 183 (188)
T 3sj5_A 137 MYDYFLGLIEGSSKFFKEEISVEEVERGEKDGFSRLKVRIKFKNPVF 183 (188)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEEEEEEETTEEEEEEEEEESSCCS
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecccCCCCceEEEEEEEeeChhh
Confidence 46799999999999988887775333 225699999998753
No 18
>2oso_A Hypothetical protein MJ1460; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} SCOP: d.278.1.3 PDB: 2osd_A*
Probab=28.24 E-value=40 Score=25.71 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=25.6
Q ss_pred ccchhHHHHHHHHhcC-CCceEEeEEe-----CCCeEEEEEcCcc
Q psy8972 57 CAIFVAGIVEAVLNNC-GFKSTVTAHW-----HKGTTYMIQFDEQ 95 (170)
Q Consensus 57 caAF~aGIIeGaL~sl-GF~a~VTAh~-----~p~TtFlIKF~~~ 95 (170)
-..|.+|++.|+++.+ |=+..|.-.- .+.|.|.++.-++
T Consensus 116 vC~~~~G~~aG~~s~~~g~~~~~~E~~C~a~G~~~C~F~~~~~~~ 160 (163)
T 2oso_A 116 IHDFIAGILAGCLEEIFYYYFVVNEVECVSQGKDKCVFEVKEVDE 160 (163)
T ss_dssp CCHHHHHHHHHHHHHHHCSEEEEEEEECGGGTCSSEEEEEEEEC-
T ss_pred eeHHHHHHHHHHHHHHhCCCeEEEEeEeEcCCCCeEEEEEEEHHH
Confidence 4578899999999864 4333332111 7899999997653
No 19
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=27.70 E-value=1.1e+02 Score=27.79 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=45.4
Q ss_pred cchhHHHHHHHHhcCCCceEEeEEe--CCCeEEEEEcCcchhchhhhhHhHHHHhhhhhc
Q psy8972 58 AIFVAGIVEAVLNNCGFKSTVTAHW--HKGTTYMIQFDEQEGKFTALQIMEENIASQWRR 115 (170)
Q Consensus 58 aAF~aGIIeGaL~slGF~a~VTAh~--~p~TtFlIKF~~~V~~re~~~~~~~~~~~~~~~ 115 (170)
+.-.+-+|+..|.++|++++|+... +--|.|.++..+-| +-+++.-..+.|++..+.
T Consensus 44 ~~~~~~~l~~~l~~f~v~~~v~~~~~gp~vt~~e~~l~~Gv-~~~~i~~l~~~la~~l~~ 102 (512)
T 2ius_A 44 LEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGV-KAARISNLSRDLARSLST 102 (512)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEEEEECSSEEEEEEEECTTC-CTHHHHTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCceEEEEeeeeCCeEEEEEEecCCCC-CHHHHHHHHHHHHHHhcc
Confidence 3467889999999999999998555 55688999988765 667777788889887754
No 20
>2vqg_A Uncharacterized protein CGL0972; transmembrane, membrane protein, porin, membrane, transport, transport; HET: GVT; 1.82A {Corynebacterium glutamicum} PDB: 2vqh_A 2vqk_A 2vql_A
Probab=25.40 E-value=30 Score=25.85 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.3
Q ss_pred cccchhHHHHHHHHhcCCCc
Q psy8972 56 NCAIFVAGIVEAVLNNCGFK 75 (170)
Q Consensus 56 ncaAF~aGIIeGaL~slGF~ 75 (170)
++.+.-|||+|+.|...|+.
T Consensus 16 ~~dwv~Cgiv~t~L~~~gl~ 35 (99)
T 2vqg_A 16 QYNWVACGILEGGLKAAGVL 35 (99)
T ss_dssp GGSHHHHHHHHHHHHHTTCC
T ss_pred ccCcccccHHHHHHHHhhcC
Confidence 35566699999999999875
No 21
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=25.15 E-value=19 Score=26.65 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=20.0
Q ss_pred CceeEEEecCCccCCcchhhhcc
Q psy8972 141 GHDFCIILEPPLVRPRGYCEKLN 163 (170)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~ 163 (170)
-.||.+-.+-|.+.|-||||+-+
T Consensus 54 ~~D~W~~~dSpdIhPVGWc~~~g 76 (107)
T 1wjq_A 54 CYDYWIDADSPDIHPVGWCSKTG 76 (107)
T ss_dssp GGCEEECTTCSSCEETTHHHHHT
T ss_pred cCCEEEECCCCCcccCcHHHhcC
Confidence 37999999999999999999754
No 22
>3fgr_A Putative phospholipase B-like 2 28 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_A*
Probab=22.15 E-value=30 Score=27.82 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=12.3
Q ss_pred cchhHHHHHHHHhc
Q psy8972 58 AIFVAGIVEAVLNN 71 (170)
Q Consensus 58 aAF~aGIIeGaL~s 71 (170)
-||.||.+||.|..
T Consensus 73 qayAAG~lEGyLT~ 86 (202)
T 3fgr_A 73 QAYAAGVVEASVSE 86 (202)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHH
Confidence 58999999999973
No 23
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=20.55 E-value=29 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=20.2
Q ss_pred hcCCCceEEeEEeCCCeEEEEEcCcchh
Q psy8972 70 NNCGFKSTVTAHWHKGTTYMIQFDEQEG 97 (170)
Q Consensus 70 ~slGF~a~VTAh~~p~TtFlIKF~~~V~ 97 (170)
++.=|||+|++-... .+|.|+|.+-+.
T Consensus 19 D~~yYpA~I~si~~~-~~Y~V~F~dG~~ 45 (67)
T 3p8d_A 19 DCRFYPAKVTAVNKD-GTYTVKFYDGVV 45 (67)
T ss_dssp TSCEEEEEEEEECTT-SEEEEEETTSCE
T ss_pred CCCEeeEEEEEECCC-CeEEEEEeCCce
Confidence 455689999988655 569999998443
Done!