RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8972
         (170 letters)



>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking
           protein particle complex 5 {Zebrafish (Brachydanio
           rerio) [TaxId: 7955]}
          Length = 168

 Score =  121 bits (306), Expect = 2e-36
 Identities = 57/95 (60%), Positives = 76/95 (80%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + +  F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA F
Sbjct: 63  LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAF 122

Query: 61  VAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 95
             GIVEA+L + GF + VT HWHKGTT MI+FDE 
Sbjct: 123 TGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDES 157


>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit
           3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 161

 Score = 81.4 bits (201), Expect = 9e-21
 Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 3   LAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVA 62
            A  +    +K   G         +     + LI + + +  F+ +P +  +L  +  + 
Sbjct: 63  TADVIAKVAFKMYLGITPSITNW-SPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLC 121

Query: 63  GIVEAVLNNCGFKSTVTAHWHK-----GTTYMIQFDEQ 95
           G++   L                     T   ++F  +
Sbjct: 122 GVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRR 159


>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 103

 Score = 25.2 bits (55), Expect = 2.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 139 PSGHDFCIILEPPLVRPRGYCEK 161
            + +DF  +++ P ++P G CEK
Sbjct: 69  DNRNDFWRLVDSPDIQPVGTCEK 91


>d1oz2a3 b.34.9.3 (A:422-527) Lethal(3)malignant brain tumor-like
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 25.2 bits (55), Expect = 2.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 139 PSGHDFCIILEPPLVRPRGYCEK 161
             G+DF I  + P + P G+C K
Sbjct: 66  SHGYDFWIDADHPDIHPAGWCSK 88


>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2,
           SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 25.3 bits (55), Expect = 2.9
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 139 PSGHDFCIILEPPLVRPRGYCEK 161
              +D  +      +RP G+C++
Sbjct: 52  TESYDQWLFYLDYRLRPVGWCQE 74


>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
           protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 107

 Score = 24.0 bits (52), Expect = 6.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 139 PSGHDFCIILEPPLVRPRGYCEK 161
            + +D+ I  + P + P G+C K
Sbjct: 52  NNCYDYWIDADSPDIHPVGWCSK 74


>d1oi1a2 b.34.9.3 (A:140-243) Scml2 protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 104

 Score = 23.7 bits (51), Expect = 7.2
 Identities = 4/23 (17%), Positives = 8/23 (34%)

Query: 139 PSGHDFCIILEPPLVRPRGYCEK 161
               D+    +   + P G+C  
Sbjct: 71  SGAFDYWCKYDSRDIFPAGWCRL 93


>d1oz2a1 b.34.9.3 (A:204-313) Lethal(3)malignant brain tumor-like
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 110

 Score = 23.7 bits (51), Expect = 7.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 139 PSGHDFCIILEPPLVRPRGYCEK 161
              HDF +    P + P G+ EK
Sbjct: 73  SECHDFWVNANSPDIHPAGWFEK 95


>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab
           (Tachypleus tridentatus) [TaxId: 6853]}
          Length = 235

 Score = 24.5 bits (53), Expect = 8.1
 Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 107 ENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCI 146
           ++    W   A +VG G   G + L ++    P+G+ + +
Sbjct: 115 QSDTDNWIARATEVGSGGWSGFKFLFFH----PNGYLYAV 150


>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
           protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 127

 Score = 23.7 bits (51), Expect = 9.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 139 PSGHDFCIILEPPLVRPRGYCEK 161
              +DF +  +   + P G+CEK
Sbjct: 52  SDCYDFWVNADALDIHPVGWCEK 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 638,457
Number of extensions: 27122
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 10
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)