BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8974
(79 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
Length = 318
Score = 84.3 bits (207), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
S NYA GLSPY +KGK GL E FD E+ ++K+ L+ + ++ VV HTGAGIST++GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFSGPH 68
PDF GPH
Sbjct: 62 PDFRGPH 68
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With
2'-N-Acetyl Adp Ribose
Length = 355
Score = 84.0 bits (206), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/67 (56%), Positives = 49/67 (73%)
Query: 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
S NYA GLSPY +KGK GL E FD E+ ++K+ L+ + ++ VV HTGAGIST++GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFSGPH 68
PDF GPH
Sbjct: 62 PDFRGPH 68
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGP-HYWRR 72
G A S DF K + KAKH+V+ +GAG+S +G+P F G YWR+
Sbjct: 1 GSARPSSSXADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRK 48
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGP-HYWRR 72
G A S DF K + KAKH+V+ +GAG+S +G+P F G YWR+
Sbjct: 1 GSARPSSSMADFRK-------FFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRK 48
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH 68
K+K + +++++ V TGAGIST +GIPDF GP+
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN 37
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp
Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp
Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH 68
K+K + +++++ V TGAGIST +GIPDF GP+
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN 37
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide
pdb|2H4F|A Chain A, Sir2-P53 Peptide-Nad+
pdb|2H4J|A Chain A, Sir2-Deacetylated Peptide (From Enzymatic Turnover In
Crystal)
pdb|2H2D|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2F|A Chain A, The Structural Basis For Sirtuin Substrate Affinity
pdb|2H2G|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|2H2H|A Chain A, The Structural Basis Of Sirtuin Substrate Specificity
pdb|2H2I|A Chain A, The Structural Basis Of Sirtuin Substrate Affinity
pdb|3D4B|A Chain A, Crystal Structure Of Sir2tm In Complex With Acetyl P53
Peptide And Dadme-Nad+
pdb|3D81|A Chain A, Sir2-S-Alkylamidate Complex Crystal Structure
pdb|3PDH|A Chain A, Structure Of Sir2tm Bound To A Propionylated Peptide
Length = 246
Score = 39.7 bits (91), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH 68
K+K + +++++ V TGAGIST +GIPDF GP+
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPN 37
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of
Sir2 Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of
Sir2 Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of
Sir2 Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of
Sir2 Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of
Sir2 Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR 72
+ +I+ +E + K+KH V+ TGAGIS +GIP F G WR+
Sbjct: 1 MEDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRK 44
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 43 KAKHVVLHTGAGISTSAGIPDFSGP-HYWRR 72
KAKH+V+ +GAG+S +G+P F G YWR+
Sbjct: 22 KAKHIVIISGAGVSAESGVPTFRGAGGYWRK 52
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 43 KAKHVVLHTGAGISTSAGIPDFSGP-HYWRR 72
KAKH+V+ +GAG+S +G+P F G YWR+
Sbjct: 14 KAKHIVIISGAGVSAESGVPTFRGAGGYWRK 44
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase
And Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase
And Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase
And Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase
And Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights
Into The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights
Into The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights
Into The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights
Into The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 43 KAKHVVLHTGAGISTSAGIPDFSGP-HYWRR 72
KAKH+V+ +GAG+S +G+P F G YWR+
Sbjct: 20 KAKHIVIISGAGVSAESGVPTFRGAGGYWRK 50
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase
Length = 323
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 42 DKAKHVVLHTGAGISTSAGIPDFSGP 67
++ + V+ GAGISTSAGIPDF P
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSP 66
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase
pdb|1J8F|B Chain B, Human Sirt2 Histone Deacetylase
Length = 323
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 42 DKAKHVVLHTGAGISTSAGIPDFSGP 67
++ + V+ GAGISTSAGIPDF P
Sbjct: 41 ERCRRVICLVGAGISTSAGIPDFRSP 66
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 15 KGKLG-LAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSG 66
+G +G L +F K+ ++ L++ I K KHVV TG+G S + IP F G
Sbjct: 15 RGSMGNLMISFLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRG 67
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog
Of Sir2
Length = 361
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 47 VVLHTGAGISTSAGIPDFSGP 67
V+ GAGISTS GIPDF P
Sbjct: 31 VIFMVGAGISTSCGIPDFRSP 51
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In
Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone
Peptide
Length = 289
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 47 VVLHTGAGISTSAGIPDFSGP 67
V+ GAGISTS GIPDF P
Sbjct: 23 VIFMVGAGISTSCGIPDFRSP 43
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 47 VVLHTGAGISTSAGIPDFSGP 67
V+ GAGISTS GIPDF P
Sbjct: 41 VIFMVGAGISTSCGIPDFRSP 61
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 47 VVLHTGAGISTSAGIPDFSGP 67
V+ GAGISTS GIPDF P
Sbjct: 41 VIFMVGAGISTSCGIPDFRSP 61
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In
Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone
Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In
Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone
Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In
Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone
Peptide
Length = 300
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 47 VVLHTGAGISTSAGIPDFSGP 67
V+ GAGISTS GIPDF P
Sbjct: 33 VIFMVGAGISTSCGIPDFRSP 53
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 34.3 bits (77), Expect = 0.017, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 44 AKHVVLHTGAGISTSAGIPDFSGPHYWRRRVEEL 77
A+ +++ TGAG+STS GIPDF + +++ L
Sbjct: 184 ARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHL 217
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With
Fluor-de-lys Peptide And Piceatannol
Length = 284
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 45 KHVVLHTGAGISTSAGIPDFSGP 67
+ VV+ GAGIST +GIPDF P
Sbjct: 23 QRVVVMVGAGISTPSGIPDFRSP 45
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad
Length = 274
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 45 KHVVLHTGAGISTSAGIPDFSGP 67
+ VV+ GAGIST +GIPDF P
Sbjct: 17 QRVVVMVGAGISTPSGIPDFRSP 39
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine
Acecs2 Peptide
pdb|3GLS|A Chain A, Crystal Structure Of Human Sirt3
pdb|3GLS|B Chain B, Crystal Structure Of Human Sirt3
pdb|3GLS|C Chain C, Crystal Structure Of Human Sirt3
pdb|3GLS|D Chain D, Crystal Structure Of Human Sirt3
pdb|3GLS|E Chain E, Crystal Structure Of Human Sirt3
pdb|3GLS|F Chain F, Crystal Structure Of Human Sirt3
pdb|3GLT|A Chain A, Crystal Structure Of Human Sirt3 With Adpr Bound To The
Acecs2 Peptide Containing A Thioacetyl Lysine
pdb|3GLU|A Chain A, Crystal Structure Of Human Sirt3 With Acecs2 Peptide
Length = 285
Score = 34.3 bits (77), Expect = 0.018, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 45 KHVVLHTGAGISTSAGIPDFSGP 67
+ VV+ GAGIST +GIPDF P
Sbjct: 24 QRVVVMVGAGISTPSGIPDFRSP 46
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 44 AKHVVLHTGAGISTSAGIPDFSGPHYWRRRVEEL 77
A+ +++ TGAG+STS GIPDF + +++ L
Sbjct: 46 ARKILVLTGAGVSTSLGIPDFRSSEGFYSKIKHL 79
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And
Adp-Ribose Transfer By Nad+-Dependent Sir2
HistonePROTEIN DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And
Adp-Ribose Transfer By Nad+-Dependent Sir2
HistonePROTEIN DEACETYLASES
Length = 297
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 47 VVLHTGAGISTSAGIPDFSGP 67
V+ GAGISTS GIPDF P
Sbjct: 30 VIFMVGAGISTSCGIPDFRSP 50
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex
Length = 249
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
I ++K++V TGAG+S +GIP F G W R R EEL
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEEL 47
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex
Length = 249
Score = 33.9 bits (76), Expect = 0.024, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
+K +K ++E +K++V TGAG+S +GIP F G W R R EEL
Sbjct: 3 EKLLKTIAE----SKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEEL 47
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex
Length = 249
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
I ++K++V TGAG+S +GIP F G W R R EEL
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEEL 47
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
pdb|1M2N|B Chain B, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp
Ribose Complex
Length = 249
Score = 33.9 bits (76), Expect = 0.025, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
I ++K++V TGAG+S +GIP F G W R R EEL
Sbjct: 9 IAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEEL 47
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex
pdb|1ICI|B Chain B, Crystal Structure Of A Sir2 Homolog-Nad Complex
Length = 256
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
+K +K ++E +K++V TGAG+S +GIP F G W R R EEL
Sbjct: 14 EKLLKTIAE----SKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEEL 58
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
pdb|4I5I|B Chain B, Crystal Structure Of The Sirt1 Catalytic Domain Bound To
Nad And An Ex527 Analog
Length = 287
Score = 33.1 bits (74), Expect = 0.044, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDF 64
+ +K+L E K +++ TGAG+S S GIPDF
Sbjct: 7 EDAVKLLQE----CKKIIVLTGAGVSVSCGIPDF 36
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFSG 66
L++ I K KHVV TG+G S + IP F G
Sbjct: 13 LAKIIKKCKHVVALTGSGTSAESNIPSFRG 42
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex
Length = 249
Score = 32.7 bits (73), Expect = 0.053, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 41 IDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
I ++K++V TGAG++ +GIP F G W R R EEL
Sbjct: 9 IAESKYLVALTGAGVAAESGIPTFRGKDGLWNRYRPEEL 47
>pdb|2B0T|A Chain A, Structure Of Monomeric Nadp Isocitrate Dehydrogenase
pdb|3MBC|A Chain A, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
pdb|3MBC|B Chain B, Crystal Structure Of Monomeric Isocitrate Dehydrogenase
From Corynebacterium Glutamicum In Complex With Nadp
Length = 738
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 18 LGLAETF--DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPHYW 70
L LAE+F + + + K VL++ +DKA +L+ S G D G H+W
Sbjct: 604 LALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGEIDNRGSHFW 658
>pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From
Escherichia Coli Identify A Methionine Aminotransferase
Function.
pdb|1U08|B Chain B, Crystal Structure And Reactivity Of Ybdl From
Escherichia Coli Identify A Methionine Aminotransferase
Function
Length = 386
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 54 GISTSAGIPDFSGPHYWRRRV 74
I+ S G PDF GP Y + R+
Sbjct: 32 AINLSQGFPDFDGPRYLQERL 52
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 6 AEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAK 45
A L P + K+GLA+ +ED D+ I + E D A+
Sbjct: 441 ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,713,773
Number of Sequences: 62578
Number of extensions: 95032
Number of successful extensions: 286
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 41
length of query: 79
length of database: 14,973,337
effective HSP length: 48
effective length of query: 31
effective length of database: 11,969,593
effective search space: 371057383
effective search space used: 371057383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)