Query psy8974
Match_columns 79
No_of_seqs 163 out of 1018
Neff 5.2
Searched_HMMs 46136
Date Sat Aug 17 00:28:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905|consensus 99.9 2E-27 4.3E-32 180.5 5.8 79 1-79 12-91 (353)
2 PRK05333 NAD-dependent deacety 99.6 9.2E-17 2E-21 118.8 3.8 43 32-74 7-50 (285)
3 PTZ00409 Sir2 (Silent Informat 99.6 3.4E-16 7.3E-21 116.0 3.3 44 31-74 15-60 (271)
4 cd01409 SIRT4 SIRT4: Eukaryoti 99.6 4.1E-16 8.9E-21 114.5 2.4 36 37-72 1-37 (260)
5 COG0846 SIR2 NAD-dependent pro 99.5 4.5E-15 9.8E-20 109.6 3.9 41 34-74 2-44 (250)
6 PRK00481 NAD-dependent deacety 99.5 1E-14 2.2E-19 105.3 4.1 41 33-73 2-43 (242)
7 PRK14138 NAD-dependent deacety 99.5 7.6E-15 1.6E-19 106.8 3.3 40 35-74 2-42 (244)
8 PTZ00410 NAD-dependent SIR2; P 99.5 1.6E-14 3.6E-19 110.9 4.2 44 30-73 13-60 (349)
9 cd01411 SIR2H SIR2H: Uncharact 99.5 1.6E-14 3.4E-19 103.8 2.8 37 37-73 1-38 (225)
10 PTZ00408 NAD-dependent deacety 99.4 2E-14 4.4E-19 104.9 1.3 33 42-74 2-35 (242)
11 KOG2684|consensus 99.4 8.9E-14 1.9E-18 108.7 3.7 42 33-74 77-119 (412)
12 cd01410 SIRT7 SIRT7: Eukaryoti 99.4 5.3E-14 1.2E-18 100.2 1.9 30 45-74 1-31 (206)
13 KOG2683|consensus 99.4 1.9E-13 4.1E-18 102.4 3.3 47 26-72 27-75 (305)
14 cd01408 SIRT1 SIRT1: Eukaryoti 99.4 2.4E-13 5.3E-18 98.4 2.5 29 45-73 1-31 (235)
15 cd01413 SIR2_Af2 SIR2_Af2: Arc 99.4 1.4E-13 3.1E-18 98.6 1.3 34 41-74 1-35 (222)
16 cd01407 SIR2-fam SIR2 family o 99.3 6.5E-13 1.4E-17 94.5 2.3 31 45-75 1-32 (218)
17 cd01412 SIRT5_Af1_CobB SIRT5_A 99.3 1.6E-12 3.6E-17 92.4 2.1 30 45-74 1-31 (224)
18 cd00296 SIR2 SIR2 superfamily 99.2 5.8E-12 1.3E-16 88.3 2.4 30 45-74 1-32 (222)
19 KOG2682|consensus 99.2 2.2E-11 4.7E-16 91.6 3.9 42 33-74 23-68 (314)
20 PF02146 SIR2: Sir2 family; I 98.9 3.5E-10 7.6E-15 77.9 0.5 24 52-75 1-26 (178)
21 cd01406 SIR2-like Sir2-like: P 97.3 0.00012 2.5E-09 52.3 1.8 23 45-67 1-23 (242)
22 PF00205 TPP_enzyme_M: Thiamin 84.4 0.62 1.3E-05 30.2 1.5 24 34-57 1-24 (137)
23 COG3961 Pyruvate decarboxylase 80.6 4.5 9.7E-05 33.7 5.3 41 16-56 181-221 (557)
24 TIGR00315 cdhB CO dehydrogenas 76.8 2.9 6.2E-05 29.3 2.8 23 34-56 17-39 (162)
25 PRK09590 celB cellobiose phosp 76.3 1.1 2.4E-05 29.1 0.6 14 45-58 2-15 (104)
26 TIGR00853 pts-lac PTS system, 74.8 1.3 2.9E-05 28.0 0.7 15 44-58 3-17 (95)
27 PRK00945 acetyl-CoA decarbonyl 74.8 4.1 8.9E-05 28.8 3.2 23 35-57 25-47 (171)
28 COG0028 IlvB Thiamine pyrophos 72.6 4.3 9.3E-05 33.0 3.2 28 32-59 188-215 (550)
29 KOG4166|consensus 72.6 5.7 0.00012 33.1 3.9 37 28-64 282-318 (675)
30 PF02302 PTS_IIB: PTS system, 72.3 1.4 3.1E-05 26.4 0.3 13 46-58 1-13 (90)
31 PRK07524 hypothetical protein; 71.5 4.8 0.0001 31.8 3.2 26 31-56 188-213 (535)
32 cd05564 PTS_IIB_chitobiose_lic 71.2 2 4.2E-05 27.1 0.8 13 46-58 1-13 (96)
33 PRK10499 PTS system N,N'-diace 71.1 2.1 4.5E-05 27.6 0.9 14 45-58 4-17 (106)
34 PF04574 DUF592: Protein of un 70.4 5 0.00011 28.3 2.8 18 34-51 136-153 (153)
35 PRK08273 thiamine pyrophosphat 69.4 5.6 0.00012 32.1 3.2 26 31-56 195-220 (597)
36 PRK09259 putative oxalyl-CoA d 68.9 6.1 0.00013 31.6 3.3 26 31-56 200-225 (569)
37 TIGR03393 indolpyr_decarb indo 68.6 7.1 0.00015 31.0 3.6 26 31-56 192-217 (539)
38 PRK06965 acetolactate synthase 67.9 6.9 0.00015 31.5 3.4 26 31-56 208-233 (587)
39 TIGR03457 sulphoacet_xsc sulfo 67.4 7.4 0.00016 31.2 3.5 26 32-57 184-209 (579)
40 cd05013 SIS_RpiR RpiR-like pro 67.3 6.3 0.00014 24.3 2.5 24 33-57 2-25 (139)
41 CHL00099 ilvB acetohydroxyacid 66.9 7 0.00015 31.5 3.3 25 32-56 205-229 (585)
42 COG1440 CelA Phosphotransferas 66.8 3.1 6.7E-05 27.5 1.1 14 45-58 2-15 (102)
43 PRK07979 acetolactate synthase 66.5 7.7 0.00017 31.0 3.5 28 31-58 193-220 (574)
44 PRK06112 acetolactate synthase 66.5 7 0.00015 31.2 3.2 26 31-56 200-225 (578)
45 COG3142 CutC Uncharacterized p 66.3 6.7 0.00015 29.5 2.9 27 32-58 156-183 (241)
46 PF03215 Rad17: Rad17 cell cyc 65.9 6.5 0.00014 32.0 2.9 47 7-56 4-57 (519)
47 TIGR02720 pyruv_oxi_spxB pyruv 65.7 7 0.00015 31.4 3.1 26 31-56 187-212 (575)
48 PRK07586 hypothetical protein; 65.5 7.6 0.00016 30.5 3.2 25 32-56 185-209 (514)
49 PLN02470 acetolactate synthase 65.3 7.4 0.00016 31.3 3.1 26 31-56 202-227 (585)
50 PRK10310 PTS system galactitol 64.8 2.9 6.3E-05 26.3 0.6 13 46-58 4-16 (94)
51 PRK07418 acetolactate synthase 64.8 8.1 0.00018 31.3 3.3 26 31-56 211-236 (616)
52 PRK08617 acetolactate synthase 64.5 8.3 0.00018 30.6 3.3 25 32-56 189-213 (552)
53 PRK08979 acetolactate synthase 64.3 8.5 0.00019 30.8 3.3 26 31-56 193-218 (572)
54 PRK06154 hypothetical protein; 64.2 9 0.00019 30.8 3.4 25 32-56 202-226 (565)
55 TIGR01504 glyox_carbo_lig glyo 64.2 9.2 0.0002 30.9 3.5 25 32-56 190-214 (588)
56 PRK07064 hypothetical protein; 64.1 8.1 0.00017 30.5 3.1 26 31-56 190-215 (544)
57 PRK07525 sulfoacetaldehyde ace 64.0 9.3 0.0002 30.7 3.5 26 31-56 187-212 (588)
58 PRK11269 glyoxylate carboligas 64.0 9 0.00019 30.8 3.4 25 32-56 191-215 (591)
59 TIGR03394 indol_phenyl_DC indo 63.3 13 0.00028 29.7 4.2 28 29-56 186-213 (535)
60 PRK07789 acetolactate synthase 63.2 9.1 0.0002 31.0 3.3 25 32-56 219-243 (612)
61 PRK06725 acetolactate synthase 63.2 9.8 0.00021 30.6 3.5 26 32-57 202-227 (570)
62 PRK08322 acetolactate synthase 63.1 9.6 0.00021 30.1 3.4 25 32-56 184-208 (547)
63 PRK07092 benzoylformate decarb 62.8 9.4 0.0002 30.2 3.3 25 32-56 194-218 (530)
64 PRK09107 acetolactate synthase 62.3 9.7 0.00021 30.8 3.3 25 32-56 200-224 (595)
65 TIGR00173 menD 2-succinyl-5-en 62.2 9 0.00019 29.6 3.0 26 31-56 198-223 (432)
66 TIGR03254 oxalate_oxc oxalyl-C 62.1 10 0.00022 30.2 3.3 26 31-56 193-218 (554)
67 TIGR02418 acolac_catab acetola 62.0 10 0.00023 29.9 3.4 26 32-57 183-208 (539)
68 PRK07282 acetolactate synthase 61.9 9.7 0.00021 30.5 3.2 25 32-56 198-222 (566)
69 PRK08327 acetolactate synthase 61.7 11 0.00023 30.3 3.5 27 31-57 207-233 (569)
70 PRK06456 acetolactate synthase 61.3 11 0.00023 30.1 3.4 25 32-56 195-219 (572)
71 PRK08527 acetolactate synthase 61.3 11 0.00023 30.2 3.4 27 31-57 190-216 (563)
72 TIGR00118 acolac_lg acetolacta 60.8 11 0.00024 29.9 3.4 25 32-56 189-213 (558)
73 PRK12474 hypothetical protein; 60.7 10 0.00022 29.9 3.2 26 31-56 188-213 (518)
74 PRK08978 acetolactate synthase 60.6 10 0.00023 30.0 3.2 25 32-56 184-208 (548)
75 PF14419 SPOUT_MTase_2: AF2226 60.2 11 0.00024 27.0 3.0 38 23-60 98-136 (173)
76 PRK06546 pyruvate dehydrogenas 59.9 10 0.00022 30.6 3.0 25 32-56 189-213 (578)
77 PRK06048 acetolactate synthase 59.8 11 0.00025 30.0 3.3 25 32-56 195-219 (561)
78 PLN02573 pyruvate decarboxylas 59.6 9.5 0.00021 30.8 2.8 27 30-56 210-236 (578)
79 PRK06457 pyruvate dehydrogenas 59.5 10 0.00022 30.2 3.0 24 33-56 184-207 (549)
80 cd05567 PTS_IIB_mannitol PTS_I 59.4 5.3 0.00011 24.3 1.1 14 45-58 1-14 (87)
81 PRK06276 acetolactate synthase 59.2 12 0.00026 30.0 3.4 26 31-56 190-215 (586)
82 PRK08155 acetolactate synthase 59.2 12 0.00025 29.9 3.2 25 32-56 199-223 (564)
83 PRK06882 acetolactate synthase 59.1 12 0.00026 29.8 3.3 25 32-56 194-218 (574)
84 PRK06466 acetolactate synthase 58.9 12 0.00026 30.0 3.2 25 32-56 194-218 (574)
85 PRK08199 thiamine pyrophosphat 58.8 12 0.00026 29.7 3.3 25 32-56 192-216 (557)
86 PRK13936 phosphoheptose isomer 58.1 15 0.00032 25.7 3.3 28 29-57 28-55 (197)
87 COG4019 Uncharacterized protei 57.7 13 0.00028 26.0 2.9 25 29-53 21-45 (156)
88 PRK07710 acetolactate synthase 57.5 13 0.00029 29.7 3.3 25 32-56 203-227 (571)
89 cd05005 SIS_PHI Hexulose-6-pho 55.7 16 0.00034 24.6 3.1 24 32-56 21-44 (179)
90 PRK08611 pyruvate oxidase; Pro 54.8 15 0.00033 29.5 3.3 25 32-56 191-215 (576)
91 PRK05858 hypothetical protein; 54.2 18 0.0004 28.7 3.6 25 32-56 191-215 (542)
92 PRK11557 putative DNA-binding 52.9 16 0.00034 26.2 2.8 24 32-56 116-139 (278)
93 TIGR03127 RuMP_HxlB 6-phospho 52.9 16 0.00034 24.5 2.7 24 32-56 18-41 (179)
94 COG4588 AcfC Accessory coloniz 51.7 9.1 0.0002 28.8 1.4 32 32-63 113-144 (252)
95 PRK09124 pyruvate dehydrogenas 50.9 17 0.00037 29.0 3.0 25 32-56 189-213 (574)
96 PRK08266 hypothetical protein; 50.7 19 0.00042 28.4 3.2 25 32-56 193-217 (542)
97 PRK15482 transcriptional regul 49.9 18 0.0004 26.2 2.8 24 32-56 123-146 (285)
98 cd04239 AAK_UMPK-like AAK_UMPK 49.2 33 0.00072 24.2 4.0 26 30-55 23-48 (229)
99 cd05566 PTS_IIB_galactitol PTS 48.6 9.5 0.00021 22.8 1.0 14 45-58 1-14 (89)
100 PF11576 DUF3236: Protein of u 48.6 23 0.0005 25.0 2.9 24 30-53 21-44 (154)
101 PF01713 Smr: Smr domain; Int 47.9 32 0.00069 20.4 3.2 30 32-61 10-44 (83)
102 PRK11302 DNA-binding transcrip 47.9 18 0.00038 25.9 2.4 25 32-57 116-140 (284)
103 PRK10892 D-arabinose 5-phospha 46.8 26 0.00057 25.7 3.2 29 30-58 32-60 (326)
104 TIGR02321 Pphn_pyruv_hyd phosp 46.4 11 0.00023 28.6 1.1 19 46-64 37-55 (290)
105 cd05563 PTS_IIB_ascorbate PTS_ 46.1 11 0.00024 22.4 0.9 13 46-58 1-13 (86)
106 COG2453 CDC14 Predicted protei 45.3 36 0.00077 23.4 3.5 31 28-58 89-119 (180)
107 cd02761 MopB_FmdB-FwdB The Mop 45.0 37 0.00081 25.4 3.9 26 32-57 223-248 (415)
108 PRK13937 phosphoheptose isomer 44.8 30 0.00065 23.8 3.1 29 28-57 22-50 (188)
109 cd05006 SIS_GmhA Phosphoheptos 42.5 36 0.00078 22.8 3.2 28 31-59 20-47 (177)
110 PRK05441 murQ N-acetylmuramic 42.1 31 0.00068 25.8 3.1 26 31-57 49-74 (299)
111 COG2513 PrpB PEP phosphonomuta 42.1 16 0.00036 28.0 1.6 21 46-66 40-60 (289)
112 PF00782 DSPc: Dual specificit 41.4 37 0.00079 21.2 2.9 30 29-58 58-87 (133)
113 KOG1970|consensus 40.9 33 0.00071 29.1 3.2 36 21-56 78-122 (634)
114 PRK02947 hypothetical protein; 40.8 39 0.00085 24.4 3.3 28 28-56 24-51 (246)
115 PRK11572 copper homeostasis pr 40.2 33 0.00072 25.7 2.9 27 31-57 155-181 (248)
116 CHL00162 thiG thiamin biosynth 39.6 21 0.00047 27.2 1.8 23 37-59 180-202 (267)
117 PRK14558 pyrH uridylate kinase 38.9 61 0.0013 22.9 4.0 25 30-54 25-49 (231)
118 cd05007 SIS_Etherase N-acetylm 38.9 36 0.00078 24.9 2.9 27 29-56 34-60 (257)
119 PF08544 GHMP_kinases_C: GHMP 38.7 78 0.0017 18.1 4.1 26 29-54 31-57 (85)
120 cd04254 AAK_UMPK-PyrH-Ec UMP k 38.5 65 0.0014 22.8 4.1 26 29-54 24-49 (231)
121 cd05565 PTS_IIB_lactose PTS_II 38.0 17 0.00036 23.4 0.9 12 46-57 2-13 (99)
122 TIGR03129 one_C_dehyd_B formyl 37.4 45 0.00098 24.9 3.3 26 31-56 228-253 (421)
123 smart00864 Tubulin Tubulin/Fts 36.5 65 0.0014 22.1 3.8 34 28-61 67-100 (192)
124 COG3962 Acetolactate synthase 36.4 41 0.00088 28.3 3.1 24 32-55 217-240 (617)
125 PRK14717 putative glycine/sarc 36.4 61 0.0013 21.6 3.4 35 32-67 7-50 (107)
126 KOG2904|consensus 36.3 34 0.00073 26.8 2.5 63 1-63 101-172 (328)
127 COG1029 FwdB Formylmethanofura 36.2 39 0.00084 27.4 2.9 35 32-68 233-267 (429)
128 TIGR02317 prpB methylisocitrat 35.9 19 0.0004 27.2 1.0 39 17-64 14-53 (285)
129 PRK07030 adenosylmethionine--8 35.3 83 0.0018 24.9 4.6 38 25-68 428-466 (466)
130 PRK06072 enoyl-CoA hydratase; 35.1 86 0.0019 22.4 4.3 33 29-61 27-61 (248)
131 TIGR02075 pyrH_bact uridylate 34.3 80 0.0017 22.5 4.0 25 30-54 26-50 (233)
132 PF08269 Cache_2: Cache domain 34.3 38 0.00082 20.4 2.1 32 43-74 55-87 (95)
133 COG0794 GutQ Predicted sugar p 34.2 47 0.001 24.2 2.8 25 32-56 26-50 (202)
134 PF12426 DUF3674: RNA dependen 33.7 21 0.00045 20.1 0.7 13 56-68 25-37 (41)
135 cd02115 AAK Amino Acid Kinases 32.6 1.1E+02 0.0024 21.2 4.4 29 29-57 14-42 (248)
136 PRK12570 N-acetylmuramic acid- 32.5 63 0.0014 24.3 3.4 23 34-57 48-70 (296)
137 cd02771 MopB_NDH-1_NuoG2-N7 Mo 31.9 58 0.0013 25.1 3.2 25 31-55 252-276 (472)
138 PRK11543 gutQ D-arabinose 5-ph 31.6 56 0.0012 23.8 2.9 26 32-57 29-54 (321)
139 PRK12478 enoyl-CoA hydratase; 31.2 1E+02 0.0022 22.9 4.3 32 29-60 32-65 (298)
140 cd04242 AAK_G5K_ProB AAK_G5K_P 31.1 74 0.0016 22.8 3.4 29 28-56 21-49 (251)
141 TIGR02320 PEP_mutase phosphoen 31.0 22 0.00047 26.8 0.7 19 46-64 40-58 (285)
142 COG1737 RpiR Transcriptional r 30.9 62 0.0013 23.7 3.1 24 32-56 118-141 (281)
143 cd02772 MopB_NDH-1_NuoG2 MopB_ 30.7 62 0.0013 24.4 3.1 25 32-56 239-263 (414)
144 smart00195 DSPc Dual specifici 30.5 93 0.002 19.6 3.5 24 36-59 70-93 (138)
145 PF10996 Beta-Casp: Beta-Casp 30.4 43 0.00094 20.9 1.9 21 33-53 96-116 (126)
146 PLN02591 tryptophan synthase 30.3 43 0.00094 24.7 2.1 25 34-58 177-201 (250)
147 cd02754 MopB_Nitrate-R-NapA-li 30.2 74 0.0016 25.2 3.5 25 32-56 269-293 (565)
148 PRK06213 enoyl-CoA hydratase; 29.9 1.1E+02 0.0023 21.5 4.0 30 32-61 32-61 (229)
149 COG3414 SgaB Phosphotransferas 29.8 28 0.0006 22.2 0.9 14 45-58 2-15 (93)
150 PLN02888 enoyl-CoA hydratase 29.8 1.3E+02 0.0027 21.9 4.5 34 28-61 36-71 (265)
151 PRK06563 enoyl-CoA hydratase; 29.7 1.3E+02 0.0027 21.5 4.4 33 29-61 26-60 (255)
152 PF08660 Alg14: Oligosaccharid 29.5 76 0.0016 21.9 3.2 25 33-57 81-105 (170)
153 PRK00358 pyrH uridylate kinase 29.5 1.1E+02 0.0024 21.5 4.0 25 30-54 25-49 (231)
154 PRK07827 enoyl-CoA hydratase; 29.5 1.2E+02 0.0026 21.7 4.3 33 29-61 33-67 (260)
155 PF08109 Antimicrobial14: Lact 29.4 13 0.00027 19.5 -0.6 7 59-65 7-13 (31)
156 PF00466 Ribosomal_L10: Riboso 29.4 94 0.002 18.9 3.3 28 30-57 6-33 (100)
157 PRK08150 enoyl-CoA hydratase; 29.3 1.1E+02 0.0024 22.0 4.1 32 29-60 29-60 (255)
158 PRK10886 DnaA initiator-associ 29.2 81 0.0018 22.3 3.3 27 29-56 26-52 (196)
159 PF13714 PEP_mutase: Phosphoen 29.2 18 0.00038 26.5 -0.1 19 46-64 31-49 (238)
160 PRK05995 enoyl-CoA hydratase; 29.1 1.3E+02 0.0027 21.6 4.4 31 30-60 32-64 (262)
161 PRK09674 enoyl-CoA hydratase-i 29.1 1.2E+02 0.0026 21.7 4.2 33 28-60 28-62 (255)
162 PLN02980 2-oxoglutarate decarb 29.0 59 0.0013 30.0 3.1 25 32-56 512-536 (1655)
163 PRK09939 putative oxidoreducta 28.7 78 0.0017 27.0 3.6 26 32-57 346-371 (759)
164 cd02767 MopB_ydeP The MopB_yde 28.5 72 0.0016 26.1 3.3 25 32-56 295-319 (574)
165 PF08937 DUF1863: MTH538 TIR-l 28.4 42 0.00091 21.6 1.6 20 36-55 63-82 (130)
166 PLN02664 enoyl-CoA hydratase/d 28.4 1.2E+02 0.0027 21.9 4.3 33 29-61 35-69 (275)
167 PRK06144 enoyl-CoA hydratase; 28.4 1.2E+02 0.0025 21.9 4.1 32 29-60 35-69 (262)
168 cd02753 MopB_Formate-Dh-H Form 28.4 77 0.0017 24.7 3.3 25 32-56 266-290 (512)
169 cd02766 MopB_3 The MopB_3 CD i 28.3 70 0.0015 25.3 3.1 26 32-57 267-292 (501)
170 PRK07112 polyketide biosynthes 28.2 1.2E+02 0.0026 21.7 4.2 32 30-61 32-63 (255)
171 smart00463 SMR Small MutS-rela 28.0 1.3E+02 0.0029 17.5 4.3 16 45-60 32-47 (80)
172 PRK06142 enoyl-CoA hydratase; 27.9 1.3E+02 0.0028 21.7 4.3 32 29-60 33-66 (272)
173 COG1029 FwdB Formylmethanofura 27.8 46 0.001 26.9 2.0 33 27-59 62-94 (429)
174 PRK00074 guaA GMP synthase; Re 27.8 77 0.0017 25.6 3.3 36 17-52 189-224 (511)
175 cd04253 AAK_UMPK-PyrH-Pf AAK_U 27.6 90 0.0019 21.9 3.3 24 32-55 18-44 (221)
176 PRK05981 enoyl-CoA hydratase; 27.6 1.4E+02 0.003 21.5 4.3 33 28-60 30-65 (266)
177 PF00696 AA_kinase: Amino acid 27.5 77 0.0017 21.9 2.9 26 30-55 19-44 (242)
178 TIGR02076 pyrH_arch uridylate 27.5 1.1E+02 0.0023 21.4 3.7 26 29-55 18-43 (221)
179 PRK08252 enoyl-CoA hydratase; 27.5 1.3E+02 0.0029 21.5 4.2 33 28-60 29-63 (254)
180 cd00368 Molybdopterin-Binding 27.3 93 0.002 22.7 3.5 25 32-56 231-255 (374)
181 cd02508 ADP_Glucose_PP ADP-glu 27.3 51 0.0011 22.3 1.9 52 1-54 4-55 (200)
182 PLN02600 enoyl-CoA hydratase 27.2 1.2E+02 0.0025 21.8 3.9 27 28-54 21-49 (251)
183 cd05009 SIS_GlmS_GlmD_2 SIS (S 26.9 68 0.0015 20.2 2.4 23 33-56 2-24 (153)
184 PF08747 DUF1788: Domain of un 26.9 74 0.0016 21.2 2.7 21 44-68 61-81 (126)
185 cd06422 NTP_transferase_like_1 26.7 78 0.0017 21.5 2.8 49 2-53 6-54 (221)
186 cd02762 MopB_1 The MopB_1 CD i 26.7 98 0.0021 24.6 3.7 26 32-57 272-297 (539)
187 PTZ00242 protein tyrosine phos 26.3 2.2E+02 0.0047 19.4 5.4 30 29-58 79-112 (166)
188 KOG1994|consensus 26.2 1.1E+02 0.0025 23.2 3.8 30 28-57 222-251 (268)
189 TIGR00824 EIIA-man PTS system, 26.2 1E+02 0.0022 19.8 3.1 27 26-52 40-66 (116)
190 cd04197 eIF-2B_epsilon_N The N 26.1 86 0.0019 21.5 2.9 48 2-52 7-54 (217)
191 PLN02836 3-oxoacyl-[acyl-carri 26.0 37 0.00081 26.4 1.2 28 46-77 6-34 (437)
192 PRK05864 enoyl-CoA hydratase; 26.0 1.4E+02 0.0031 21.6 4.2 31 30-60 38-70 (276)
193 cd04246 AAK_AK-DapG-like AAK_A 25.8 1.8E+02 0.0039 20.5 4.6 28 27-54 14-41 (239)
194 PF00931 NB-ARC: NB-ARC domain 25.7 99 0.0021 21.6 3.2 22 32-53 3-27 (287)
195 cd05568 PTS_IIB_bgl_like PTS_I 25.5 27 0.00059 20.2 0.3 13 46-58 2-14 (85)
196 PRK14557 pyrH uridylate kinase 25.2 1.4E+02 0.003 21.8 4.0 26 29-54 28-53 (247)
197 KOG2653|consensus 25.2 43 0.00093 27.4 1.4 42 5-56 87-132 (487)
198 PRK08138 enoyl-CoA hydratase; 24.9 1.6E+02 0.0036 21.1 4.3 33 29-61 35-69 (261)
199 cd04261 AAK_AKii-LysC-BS AAK_A 24.8 1.9E+02 0.0042 20.4 4.6 28 26-53 13-40 (239)
200 PRK11840 bifunctional sulfur c 24.8 49 0.0011 25.8 1.7 15 45-59 248-262 (326)
201 TIGR00284 dihydropteroate synt 24.5 21 0.00045 29.1 -0.5 27 46-72 62-95 (499)
202 PRK00414 gmhA phosphoheptose i 24.4 96 0.0021 21.5 2.9 27 32-58 28-57 (192)
203 TIGR00197 yjeF_nterm yjeF N-te 24.3 1.4E+02 0.0031 20.9 3.8 29 27-55 24-56 (205)
204 cd02764 MopB_PHLH The MopB_PHL 24.1 1.2E+02 0.0027 23.9 3.8 27 31-57 305-331 (524)
205 PRK08166 NADH dehydrogenase su 24.0 92 0.002 26.4 3.2 26 31-56 480-505 (847)
206 PRK07449 2-succinyl-5-enolpyru 23.9 47 0.001 26.4 1.5 24 32-56 210-233 (568)
207 cd00006 PTS_IIA_man PTS_IIA, P 23.8 1.4E+02 0.003 19.0 3.4 29 25-53 38-66 (122)
208 PRK07658 enoyl-CoA hydratase; 23.8 1.7E+02 0.0036 20.8 4.2 33 29-61 28-62 (257)
209 TIGR01591 Fdh-alpha formate de 23.7 1.1E+02 0.0024 24.7 3.5 25 32-56 265-289 (671)
210 PRK06023 enoyl-CoA hydratase; 23.6 1.7E+02 0.0036 20.9 4.1 33 29-61 33-67 (251)
211 cd02201 FtsZ_type1 FtsZ is a G 23.5 1.1E+02 0.0024 22.8 3.3 33 29-61 70-102 (304)
212 PRK07327 enoyl-CoA hydratase; 23.5 1.8E+02 0.0038 21.0 4.3 33 29-61 39-73 (268)
213 KOG2728|consensus 23.5 1.1E+02 0.0023 23.8 3.2 34 20-56 7-42 (302)
214 PF00731 AIRC: AIR carboxylase 23.5 63 0.0014 22.4 1.9 23 35-57 42-67 (150)
215 PRK08139 enoyl-CoA hydratase; 23.5 1.6E+02 0.0035 21.3 4.1 33 29-61 38-72 (266)
216 cd04241 AAK_FomA-like AAK_FomA 23.4 1.3E+02 0.0028 21.4 3.5 32 32-63 23-61 (252)
217 TIGR01701 Fdhalpha-like oxidor 23.4 1.1E+02 0.0024 25.8 3.6 25 32-56 332-356 (743)
218 PRK07799 enoyl-CoA hydratase; 23.3 1.9E+02 0.0042 20.7 4.4 32 29-60 32-65 (263)
219 TIGR01162 purE phosphoribosyla 23.2 1.3E+02 0.0028 21.1 3.4 14 44-57 52-65 (156)
220 PLN03214 probable enoyl-CoA hy 23.2 1.4E+02 0.0031 21.8 3.8 25 30-54 39-65 (278)
221 PRK06494 enoyl-CoA hydratase; 23.1 1.8E+02 0.0038 20.9 4.2 25 30-54 32-58 (259)
222 cd00127 DSPc Dual specificity 23.0 2E+02 0.0043 17.8 4.2 26 33-58 70-95 (139)
223 PRK08272 enoyl-CoA hydratase; 23.0 1.8E+02 0.004 21.4 4.4 32 29-60 37-70 (302)
224 cd02524 G1P_cytidylyltransfera 22.9 93 0.002 21.8 2.7 49 2-53 5-53 (253)
225 PRK00919 GMP synthase subunit 22.9 1.1E+02 0.0023 23.4 3.1 28 25-52 3-30 (307)
226 PRK11337 DNA-binding transcrip 22.8 74 0.0016 22.9 2.2 25 32-57 128-152 (292)
227 PF06985 HET: Heterokaryon inc 22.8 1.1E+02 0.0024 18.9 2.8 33 25-57 55-87 (139)
228 PRK08258 enoyl-CoA hydratase; 22.7 1.3E+02 0.0029 21.8 3.5 16 45-60 62-77 (277)
229 PRK00103 rRNA large subunit me 22.6 99 0.0021 21.3 2.7 12 4-15 22-33 (157)
230 PRK06190 enoyl-CoA hydratase; 22.6 2.1E+02 0.0046 20.7 4.5 32 29-60 31-64 (258)
231 TIGR00065 ftsZ cell division p 22.4 1.1E+02 0.0025 23.5 3.3 34 28-61 86-119 (349)
232 PRK10201 G/U mismatch-specific 22.3 1.1E+02 0.0024 21.4 3.0 29 28-56 83-112 (168)
233 PF05706 CDKN3: Cyclin-depende 22.2 2.3E+02 0.005 20.1 4.5 28 29-56 118-145 (168)
234 PRK09245 enoyl-CoA hydratase; 22.2 2E+02 0.0043 20.6 4.3 31 30-60 32-64 (266)
235 PLN02349 glycerol-3-phosphate 22.2 34 0.00075 27.7 0.4 18 45-62 365-382 (426)
236 PRK07396 dihydroxynaphthoic ac 22.0 1.7E+02 0.0037 21.2 4.0 32 29-60 40-74 (273)
237 PRK08290 enoyl-CoA hydratase; 22.0 1.9E+02 0.0042 21.3 4.3 33 29-61 31-65 (288)
238 PRK13265 glycine/sarcosine/bet 21.9 1.4E+02 0.0031 21.1 3.3 33 34-67 58-99 (154)
239 TIGR03015 pepcterm_ATPase puta 21.9 2.7E+02 0.0059 19.3 4.9 32 21-52 19-50 (269)
240 PF01963 TraB: TraB family; I 21.8 98 0.0021 21.5 2.6 22 34-55 217-238 (259)
241 PF13824 zf-Mss51: Zinc-finger 21.8 49 0.0011 19.5 0.9 16 57-72 18-33 (55)
242 PRK05862 enoyl-CoA hydratase; 21.6 2E+02 0.0043 20.6 4.2 32 29-60 31-64 (257)
243 PRK09461 ansA cytoplasmic aspa 21.5 1.1E+02 0.0024 23.3 3.0 16 41-56 105-120 (335)
244 cd02770 MopB_DmsA-EC This CD ( 21.5 1E+02 0.0022 25.0 2.9 25 32-56 299-323 (617)
245 PRK07854 enoyl-CoA hydratase; 21.4 1.9E+02 0.0042 20.6 4.1 18 44-61 43-60 (243)
246 PRK05674 gamma-carboxygeranoyl 21.3 2E+02 0.0043 20.8 4.2 33 29-61 33-67 (265)
247 PRK07468 enoyl-CoA hydratase; 21.2 2.1E+02 0.0046 20.5 4.3 33 29-61 32-66 (262)
248 PRK05870 enoyl-CoA hydratase; 21.1 2.1E+02 0.0046 20.3 4.3 33 29-61 30-64 (249)
249 PRK08140 enoyl-CoA hydratase; 20.9 1.7E+02 0.0037 20.9 3.8 33 29-61 31-64 (262)
250 PRK05809 3-hydroxybutyryl-CoA 20.9 1.9E+02 0.004 20.7 3.9 32 29-60 31-65 (260)
251 PRK07509 enoyl-CoA hydratase; 20.9 2.3E+02 0.0051 20.1 4.5 16 46-61 49-64 (262)
252 COG2910 Putative NADH-flavin r 20.8 1.7E+02 0.0037 21.7 3.7 24 32-55 83-108 (211)
253 PF13821 DUF4187: Domain of un 20.7 1.5E+02 0.0032 17.1 2.8 26 29-54 11-36 (55)
254 KOG1680|consensus 20.6 1.8E+02 0.0038 22.6 3.9 17 44-60 81-97 (290)
255 PRK05980 enoyl-CoA hydratase; 20.6 2E+02 0.0044 20.5 4.1 32 29-60 30-64 (260)
256 PRK03580 carnitinyl-CoA dehydr 20.6 2.1E+02 0.0045 20.5 4.2 26 29-54 29-56 (261)
257 PRK08259 enoyl-CoA hydratase; 20.6 2.3E+02 0.005 20.3 4.4 33 29-61 30-64 (254)
258 COG3461 Uncharacterized conser 20.4 1.8E+02 0.0039 19.2 3.4 23 21-43 3-25 (103)
259 TIGR03210 badI 2-ketocyclohexa 20.2 1.4E+02 0.0031 21.4 3.2 26 29-54 29-56 (256)
260 PRK07657 enoyl-CoA hydratase; 20.1 1.9E+02 0.0042 20.6 3.9 15 46-60 50-65 (260)
261 PRK09129 NADH dehydrogenase su 20.0 1.3E+02 0.0027 25.3 3.3 25 32-56 457-481 (776)
No 1
>KOG1905|consensus
Probab=99.94 E-value=2e-27 Score=180.45 Aligned_cols=79 Identities=49% Similarity=0.767 Sum_probs=76.9
Q ss_pred CchhhhccCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhCCcEEEEccCCCCccCCCCCCCCcc-hhhhccccccC
Q psy8974 1 MSCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRRVEELTK 79 (79)
Q Consensus 1 m~~~ya~~ls~~~~kg~~g~~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~~~l~~ 79 (79)
||++||+++|+|.++|++|.||.||+++.++.++++|++++++++++||+|||||||+||||||||++ +|+++++|.++
T Consensus 12 ~~v~~~~~~s~~~~~~k~~~~e~~D~~e~l~~kv~elA~li~~sk~lvv~tGAGISTaa~IPDfRGp~GVWTL~~kG~~~ 91 (353)
T KOG1905|consen 12 MSVNYAHGLSIRLEKGKQGRPEEFDPPEVLRTKVEELAQLIQQSKHLVVYTGAGISTAAGIPDFRGPQGVWTLQQKGKDK 91 (353)
T ss_pred hhhhhhcccchhhhcccccCccccCCHHHHHHHHHHHHHHHhhCCcEEEEeCCccccccCCCCccCCCceeehhhcCccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999 99999988753
No 2
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=99.65 E-value=9.2e-17 Score=118.79 Aligned_cols=43 Identities=33% Similarity=0.753 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCccCCCCCCCCcc-hhhhcc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRRV 74 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~ 74 (79)
..++.|+++|++++++|||||||||++||||||||++ +|+...
T Consensus 7 ~~l~~l~~~i~~~~~ivvlTGAGiS~~SGIPdFR~~~G~w~~~~ 50 (285)
T PRK05333 7 AALDALQDFVERHPRLFVLTGAGISTDSGIPDYRDRNGQWKRSP 50 (285)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCccccccCCCcccCCCCccccCC
Confidence 4466899999999999999999999999999999999 998653
No 3
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=99.61 E-value=3.4e-16 Score=116.04 Aligned_cols=44 Identities=36% Similarity=0.632 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCCccCCCCCCCCc-c-hhhhcc
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGP-H-YWRRRV 74 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~-~-~w~~~~ 74 (79)
+..++.++++|+++++||||||||||++|||||||++ + +|+...
T Consensus 15 ~~~l~~l~~~l~~s~~ivvlTGAGiSteSGIPdFR~~~~Glw~~~~ 60 (271)
T PTZ00409 15 SITLEDLADMIRKCKYVVALTGSGTSAESNIPSFRGPSSSIWSKYD 60 (271)
T ss_pred cccHHHHHHHHHhCCcEEEEECCeechhhCCCcccCCCCccccCCC
Confidence 3457789999999999999999999999999999998 6 998754
No 4
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.59 E-value=4.1e-16 Score=114.46 Aligned_cols=36 Identities=36% Similarity=0.804 Sum_probs=34.1
Q ss_pred HHHHHHhCCcEEEEccCCCCccCCCCCCCCcc-hhhh
Q psy8974 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR 72 (79)
Q Consensus 37 l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~ 72 (79)
|+++|+++++||||||||||++||||||||++ +|+.
T Consensus 1 ~~~~l~~sk~ivvlTGAGiSt~SGIPdFR~~~Glw~~ 37 (260)
T cd01409 1 LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSR 37 (260)
T ss_pred ChHHHhcCCCEEEEeCceeehhhCCCCCCCcCCcccC
Confidence 46789999999999999999999999999999 9987
No 5
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=99.54 E-value=4.5e-15 Score=109.56 Aligned_cols=41 Identities=37% Similarity=0.718 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCcEEEEccCCCCccCCCCCCCCcc-hhh-hcc
Q psy8974 34 IKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWR-RRV 74 (79)
Q Consensus 34 ~~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~-~~~ 74 (79)
+++++++|+.+++|||+||||||++|||||||+.+ +|. .+.
T Consensus 2 ~~~~~~~l~~a~~ivvltGAGiSa~sGIpdFR~~~Gl~~~~~~ 44 (250)
T COG0846 2 LEEVAQALKEAKRIVVLTGAGISAESGIPDFRSKDGLWSDKYD 44 (250)
T ss_pred HHHHHHHHHhcCcEEEEeCCccccccCCCcccCCCCCCCCCCC
Confidence 46788999999999999999999999999999999 999 543
No 6
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=99.51 E-value=1e-14 Score=105.27 Aligned_cols=41 Identities=49% Similarity=0.891 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCcEEEEccCCCCccCCCCCCCCcc-hhhhc
Q psy8974 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRR 73 (79)
Q Consensus 33 ~~~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~~ 73 (79)
+++.++++|+++++|||+||||||++|||||||+.+ +|+..
T Consensus 2 ~l~~l~~~i~~~~~ivi~tGAGiS~~sGip~FR~~~gl~~~~ 43 (242)
T PRK00481 2 RIEELAEILDKAKRIVVLTGAGISAESGIPDFRSANGLWEEH 43 (242)
T ss_pred hHHHHHHHHHhCCCEEEEeCCccccccCCCCccCCCcCccCC
Confidence 467899999999999999999999999999999998 99754
No 7
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=99.51 E-value=7.6e-15 Score=106.83 Aligned_cols=40 Identities=43% Similarity=0.758 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCcEEEEccCCCCccCCCCCCCCcc-hhhhcc
Q psy8974 35 KVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRRV 74 (79)
Q Consensus 35 ~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~ 74 (79)
+.++++|+++++|||+||||||++|||||||+++ +|+...
T Consensus 2 ~~l~~~l~~a~~ivv~tGAGiS~~SGIp~fR~~~gl~~~~~ 42 (244)
T PRK14138 2 KEFLELLNESRLTVTLTGAGISTPSGIPDFRGPQGIYKKYP 42 (244)
T ss_pred HHHHHHHHhCCCEEEEECcccchhhCCCCcCCCCCCccCCc
Confidence 5688999999999999999999999999999999 998653
No 8
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=99.50 E-value=1.6e-14 Score=110.89 Aligned_cols=44 Identities=32% Similarity=0.660 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHh--CCcEEEEccCCCCccCCCCCCCCc-c-hhhhc
Q psy8974 30 FDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFSGP-H-YWRRR 73 (79)
Q Consensus 30 ~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sGIPdfR~~-~-~w~~~ 73 (79)
.+..++.|+++|++ +++||||||||||++|||||||++ + +|+..
T Consensus 13 ~~~~l~~la~~I~~~~ak~IVvlTGAGISteSGIPdFRs~~~Glw~~~ 60 (349)
T PTZ00410 13 GEPTFEGLARYIERNNVTKILVMVGAGISVAAGIPDFRSPHTGIYAKL 60 (349)
T ss_pred chHHHHHHHHHHHhcCCCCEEEEECcccccccCCCcccCcCCCcCccc
Confidence 34557789999998 689999999999999999999999 6 99874
No 9
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.48 E-value=1.6e-14 Score=103.84 Aligned_cols=37 Identities=38% Similarity=0.728 Sum_probs=34.2
Q ss_pred HHHHHHhCCcEEEEccCCCCccCCCCCCCCcc-hhhhc
Q psy8974 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRR 73 (79)
Q Consensus 37 l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~~ 73 (79)
|+++|+++++|||+||||||++|||||||+++ +|+..
T Consensus 1 ~~~~i~~a~~ivv~tGAGiS~~sGIpdfR~~~G~w~~~ 38 (225)
T cd01411 1 LQHILKNAKRIVFFTGAGVSTASGIPDYRSKNGLYNEI 38 (225)
T ss_pred ChHHHhhCCCEEEEECCccccccCCCCccCCCcCccCc
Confidence 46789999999999999999999999999999 99874
No 10
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=99.44 E-value=2e-14 Score=104.95 Aligned_cols=33 Identities=30% Similarity=0.639 Sum_probs=30.0
Q ss_pred HhCCcEEEEccCCCCccCCCCCCCCcc-hhhhcc
Q psy8974 42 DKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRRV 74 (79)
Q Consensus 42 ~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~ 74 (79)
+++++||||||||||++|||||||+++ +|+..+
T Consensus 2 ~~~~~ivvlTGAGiS~~SGIPdFR~~~Glw~~~~ 35 (242)
T PTZ00408 2 KACRCITILTGAGISAESGISTFRDGNGLWENHR 35 (242)
T ss_pred CCCCeEEEEeCcchhhhhCCCcccCCCCCCCCCC
Confidence 468999999999999999999999999 997653
No 11
>KOG2684|consensus
Probab=99.43 E-value=8.9e-14 Score=108.72 Aligned_cols=42 Identities=38% Similarity=0.644 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCcEEEEccCCCCccCCCCCCCCcc-hhhhcc
Q psy8974 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRRV 74 (79)
Q Consensus 33 ~~~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~ 74 (79)
.+..+..+|+.||+|||+||||||+++||||||+.+ +|...+
T Consensus 77 t~~~~~~~l~kaKrIvVlTGAGVSvs~GIPDFRSs~G~ys~l~ 119 (412)
T KOG2684|consen 77 TLADFVKLLKKAKRIVVLTGAGVSVSAGIPDFRSSEGIYSKLK 119 (412)
T ss_pred cHHHHHHHHHhcCeEEEEeCCceeeecCCCCccccccHHHHhh
Confidence 456677889999999999999999999999999999 998753
No 12
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.42 E-value=5.3e-14 Score=100.24 Aligned_cols=30 Identities=67% Similarity=1.102 Sum_probs=27.8
Q ss_pred CcEEEEccCCCCccCCCCCCCCcc-hhhhcc
Q psy8974 45 KHVVLHTGAGISTSAGIPDFSGPH-YWRRRV 74 (79)
Q Consensus 45 ~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~ 74 (79)
|+||||||||||++|||||||+++ +|+..+
T Consensus 1 k~ivvltGAGiS~~SGIP~fR~~~Glw~~~~ 31 (206)
T cd01410 1 KHLVVFTGAGISTSAGIPDFRGPNGVWTLLP 31 (206)
T ss_pred CcEEEEeCCcccHhhCCCcccCcCCCcccCC
Confidence 689999999999999999999999 998754
No 13
>KOG2683|consensus
Probab=99.39 E-value=1.9e-13 Score=102.39 Aligned_cols=47 Identities=34% Similarity=0.584 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEccCCCCccCCCCCCCCcc--hhhh
Q psy8974 26 SKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH--YWRR 72 (79)
Q Consensus 26 ~~~~~~~~~~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~--~w~~ 72 (79)
.++..++++++|.++|..+++++|+|||||||||||||||+++ +|..
T Consensus 27 ~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYar 75 (305)
T KOG2683|consen 27 ADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYAR 75 (305)
T ss_pred CCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceee
Confidence 3345567899999999999999999999999999999999999 8874
No 14
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=99.37 E-value=2.4e-13 Score=98.36 Aligned_cols=29 Identities=55% Similarity=0.885 Sum_probs=26.8
Q ss_pred CcEEEEccCCCCccCCCCCCCCcc--hhhhc
Q psy8974 45 KHVVLHTGAGISTSAGIPDFSGPH--YWRRR 73 (79)
Q Consensus 45 ~~ivvltGAGiSt~sGIPdfR~~~--~w~~~ 73 (79)
|++|||||||||++||||||||++ +|+..
T Consensus 1 k~ivvlTGAGiS~~SGIPdfR~~~~G~w~~~ 31 (235)
T cd01408 1 KKIVVLVGAGISTSAGIPDFRSPGTGLYANL 31 (235)
T ss_pred CcEEEEeCCccccccCCCCcCCCCCCcchhh
Confidence 579999999999999999999987 99874
No 15
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=99.37 E-value=1.4e-13 Score=98.62 Aligned_cols=34 Identities=47% Similarity=0.929 Sum_probs=30.8
Q ss_pred HHhCCcEEEEccCCCCccCCCCCCCCcc-hhhhcc
Q psy8974 41 IDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRRV 74 (79)
Q Consensus 41 l~~s~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~ 74 (79)
|+++++|||+||||||++|||||||+++ +|+.+.
T Consensus 1 l~~a~~ivv~tGAGiS~~sGIp~FR~~~glw~~~~ 35 (222)
T cd01413 1 LTKSRKTVVLTGAGISTESGIPDFRSPDGLWKKYD 35 (222)
T ss_pred CCCCCeEEEEECchhhhhhCCCCccCcCCCcCCCC
Confidence 3578999999999999999999999999 998654
No 16
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=99.32 E-value=6.5e-13 Score=94.46 Aligned_cols=31 Identities=55% Similarity=0.938 Sum_probs=28.3
Q ss_pred CcEEEEccCCCCccCCCCCCCCcc-hhhhccc
Q psy8974 45 KHVVLHTGAGISTSAGIPDFSGPH-YWRRRVE 75 (79)
Q Consensus 45 ~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~~ 75 (79)
|+|||+||||||++|||||||+++ +|+...+
T Consensus 1 k~ivv~tGAGiS~~sGIpdfR~~~G~~~~~~~ 32 (218)
T cd01407 1 KRIVVLTGAGISTESGIPDFRSPGGLWARLDP 32 (218)
T ss_pred CcEEEEeCCccccccCCCcccCCCCccccCCh
Confidence 589999999999999999999999 9987643
No 17
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=99.27 E-value=1.6e-12 Score=92.45 Aligned_cols=30 Identities=47% Similarity=0.824 Sum_probs=27.4
Q ss_pred CcEEEEccCCCCccCCCCCCCCcc-hhhhcc
Q psy8974 45 KHVVLHTGAGISTSAGIPDFSGPH-YWRRRV 74 (79)
Q Consensus 45 ~~ivvltGAGiSt~sGIPdfR~~~-~w~~~~ 74 (79)
++|||+||||||++|||||||+++ +|+...
T Consensus 1 ~~ivi~tGAGiS~~sGIp~fR~~~g~~~~~~ 31 (224)
T cd01412 1 RRVVVLTGAGISAESGIPTFRDADGLWARFD 31 (224)
T ss_pred CcEEEEeCCccchhhCCCCccCcCCCcCCCC
Confidence 579999999999999999999999 997653
No 18
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=99.21 E-value=5.8e-12 Score=88.31 Aligned_cols=30 Identities=60% Similarity=0.961 Sum_probs=27.4
Q ss_pred CcEEEEccCCCCccCCCCCCCCcc--hhhhcc
Q psy8974 45 KHVVLHTGAGISTSAGIPDFSGPH--YWRRRV 74 (79)
Q Consensus 45 ~~ivvltGAGiSt~sGIPdfR~~~--~w~~~~ 74 (79)
+++|+|||||||++|||||||+.+ +|+...
T Consensus 1 k~iv~~tGAGiS~~sGiP~fr~~~~g~~~~~~ 32 (222)
T cd00296 1 KRVVVFTGAGISTESGIPDFRGLGTGLWTRLD 32 (222)
T ss_pred CCEEEEeCCccccccCCCCccccccchhhcCC
Confidence 589999999999999999999988 998754
No 19
>KOG2682|consensus
Probab=99.17 E-value=2.2e-11 Score=91.57 Aligned_cols=42 Identities=36% Similarity=0.671 Sum_probs=36.8
Q ss_pred HHHHHHHHHHh--CCcEEEEccCCCCccCCCCCCCCcc--hhhhcc
Q psy8974 33 KIKVLSEWIDK--AKHVVLHTGAGISTSAGIPDFSGPH--YWRRRV 74 (79)
Q Consensus 33 ~~~~l~~~l~~--s~~ivvltGAGiSt~sGIPdfR~~~--~w~~~~ 74 (79)
.++.++++++. +++++|+.||||||++||||||+|. +|.+.+
T Consensus 23 ~lekvA~~mks~~~~rVi~mVGAGISTsaGIPDFRSP~tGlY~NLq 68 (314)
T KOG2682|consen 23 TLEKVARLMKSERCRRVIVMVGAGISTSAGIPDFRSPGTGLYDNLQ 68 (314)
T ss_pred hHHHHHHHHhhCCcceEEEEecCccccccCCCCCCCCCchhhhhHH
Confidence 37788889984 6899999999999999999999998 887653
No 20
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=98.89 E-value=3.5e-10 Score=77.94 Aligned_cols=24 Identities=54% Similarity=1.072 Sum_probs=18.8
Q ss_pred cCCCCccCCCCCCCC-cc-hhhhccc
Q psy8974 52 GAGISTSAGIPDFSG-PH-YWRRRVE 75 (79)
Q Consensus 52 GAGiSt~sGIPdfR~-~~-~w~~~~~ 75 (79)
|||||++|||||||+ ++ +|+..++
T Consensus 1 GAGiS~~SGIpdfR~~~~Glw~~~~~ 26 (178)
T PF02146_consen 1 GAGISTASGIPDFRSDPDGLWTKYKP 26 (178)
T ss_dssp -GGGGGGGT--SSSSTTSCHHHHCHH
T ss_pred CCccchhhCCCccccCCCCcceeeec
Confidence 899999999999999 88 9998643
No 21
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=97.32 E-value=0.00012 Score=52.25 Aligned_cols=23 Identities=43% Similarity=0.800 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCccCCCCCCCCc
Q psy8974 45 KHVVLHTGAGISTSAGIPDFSGP 67 (79)
Q Consensus 45 ~~ivvltGAGiSt~sGIPdfR~~ 67 (79)
.++|+|.|||+|..+|+|++++-
T Consensus 1 g~lvlFiGAG~S~~~glP~W~~L 23 (242)
T cd01406 1 GRVVIFVGAGVSVSSGLPDWKTL 23 (242)
T ss_pred CCEEEEecCccccccCCCChHHH
Confidence 47899999999999999999864
No 22
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=84.35 E-value=0.62 Score=30.16 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 34 IKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 34 ~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+++++++|++|++.++++|.|+..
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~ 24 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARR 24 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHH
T ss_pred CHHHHHHHHhCCCEEEEEcCCcCh
Confidence 568899999999999999999763
No 23
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=80.62 E-value=4.5 Score=33.65 Aligned_cols=41 Identities=29% Similarity=0.330 Sum_probs=34.9
Q ss_pred CCCCCCccCCCHHHHHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 16 GKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 16 g~~g~~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.++..+....+++...+.++.+.++|.++|+.++|+|+.++
T Consensus 181 ~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~ 221 (557)
T COG3961 181 TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVS 221 (557)
T ss_pred CccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhh
Confidence 55555555677788889999999999999999999999987
No 24
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=76.82 E-value=2.9 Score=29.30 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCcEEEEccCCCC
Q psy8974 34 IKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 34 ~~~l~~~l~~s~~ivvltGAGiS 56 (79)
-+.++++|+++++.+++.|.|+.
T Consensus 17 p~~aa~lLk~AKRPvIivG~ga~ 39 (162)
T TIGR00315 17 PKLVAMMIKRAKRPLLIVGPENL 39 (162)
T ss_pred HHHHHHHHHcCCCcEEEECCCcC
Confidence 35788899999999999999986
No 25
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=76.26 E-value=1.1 Score=29.10 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=12.0
Q ss_pred CcEEEEccCCCCcc
Q psy8974 45 KHVVLHTGAGISTS 58 (79)
Q Consensus 45 ~~ivvltGAGiSt~ 58 (79)
++|++++|+|+||+
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 57999999999865
No 26
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=74.83 E-value=1.3 Score=28.00 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=12.9
Q ss_pred CCcEEEEccCCCCcc
Q psy8974 44 AKHVVLHTGAGISTS 58 (79)
Q Consensus 44 s~~ivvltGAGiSt~ 58 (79)
.++|++++|+|+|++
T Consensus 3 ~~~ILl~C~~G~sSS 17 (95)
T TIGR00853 3 ETNILLLCAAGMSTS 17 (95)
T ss_pred ccEEEEECCCchhHH
Confidence 478999999999964
No 27
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=74.76 E-value=4.1 Score=28.82 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCcEEEEccCCCCc
Q psy8974 35 KVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 35 ~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+.++++|++|++.+++.|.|+..
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~ 47 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLD 47 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccc
Confidence 47788999999999999999975
No 28
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=72.64 E-value=4.3 Score=33.04 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCccC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt~s 59 (79)
+++++++++|.++++.|++.|.|+..+.
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~ 215 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAG 215 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccc
Confidence 7899999999999999999999997554
No 29
>KOG4166|consensus
Probab=72.60 E-value=5.7 Score=33.06 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCCCccCCCCCC
Q psy8974 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDF 64 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s~~ivvltGAGiSt~sGIPdf 64 (79)
+.....+++++++|+-+|+-|++.|+|+-..+-.|..
T Consensus 282 ~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~l 318 (675)
T KOG4166|consen 282 DFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRL 318 (675)
T ss_pred hhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHH
Confidence 3455789999999999999999999999877766653
No 30
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=72.34 E-value=1.4 Score=26.36 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=11.1
Q ss_pred cEEEEccCCCCcc
Q psy8974 46 HVVLHTGAGISTS 58 (79)
Q Consensus 46 ~ivvltGAGiSt~ 58 (79)
+|++.+|+|++|+
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 5889999999875
No 31
>PRK07524 hypothetical protein; Provisional
Probab=71.48 E-value=4.8 Score=31.79 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.++++.++|+++++.+|++|.|+.
T Consensus 188 ~~~i~~~~~~L~~AkrPvil~G~g~~ 213 (535)
T PRK07524 188 PAALAQAAERLAAARRPLILAGGGAL 213 (535)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCChH
Confidence 35688999999999999999999985
No 32
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=71.23 E-value=2 Score=27.06 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=11.3
Q ss_pred cEEEEccCCCCcc
Q psy8974 46 HVVLHTGAGISTS 58 (79)
Q Consensus 46 ~ivvltGAGiSt~ 58 (79)
+|++++|+|+||+
T Consensus 1 kIl~~Cg~G~sTS 13 (96)
T cd05564 1 KILLVCSAGMSTS 13 (96)
T ss_pred CEEEEcCCCchHH
Confidence 4889999999875
No 33
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=71.07 E-value=2.1 Score=27.64 Aligned_cols=14 Identities=57% Similarity=0.795 Sum_probs=12.3
Q ss_pred CcEEEEccCCCCcc
Q psy8974 45 KHVVLHTGAGISTS 58 (79)
Q Consensus 45 ~~ivvltGAGiSt~ 58 (79)
++|++++|+|+||+
T Consensus 4 kkIllvC~~G~sTS 17 (106)
T PRK10499 4 KHIYLFCSAGMSTS 17 (106)
T ss_pred CEEEEECCCCccHH
Confidence 57999999999975
No 34
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=70.41 E-value=5 Score=28.31 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.2
Q ss_pred HHHHHHHHHhCCcEEEEc
Q psy8974 34 IKVLSEWIDKAKHVVLHT 51 (79)
Q Consensus 34 ~~~l~~~l~~s~~ivvlt 51 (79)
++.+.+.|++|++|+|+|
T Consensus 136 id~~v~~lk~akkIlVlT 153 (153)
T PF04574_consen 136 IDDVVDLLKSAKKILVLT 153 (153)
T ss_dssp HHHHHHHHHH-SSEEEEE
T ss_pred HHHHHHHHHhcCceEEeC
Confidence 567889999999999997
No 35
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=69.44 E-value=5.6 Score=32.11 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|++|++.|++.|.|+.
T Consensus 195 ~~~i~~a~~~L~~AkrPvi~~G~g~~ 220 (597)
T PRK08273 195 DEDLRRAAEVLNAGRKVAILVGAGAL 220 (597)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcchH
Confidence 35688999999999999999999984
No 36
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=68.88 E-value=6.1 Score=31.57 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|.+|++.+++.|.|+-
T Consensus 200 ~~~l~~~~~~L~~AkrPvIi~G~g~~ 225 (569)
T PRK09259 200 PEAVDRALDLLKKAKRPLIILGKGAA 225 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcCcc
Confidence 35688999999999999999999984
No 37
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=68.59 E-value=7.1 Score=30.99 Aligned_cols=26 Identities=15% Similarity=-0.080 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|++|++.+++.|.|+.
T Consensus 192 ~~~i~~a~~~L~~AkrPvil~G~g~~ 217 (539)
T TIGR03393 192 RAFRDAAENKLAMAKRVSLLADFLAL 217 (539)
T ss_pred HHHHHHHHHHHHhCCCCEEEeChhhc
Confidence 45588899999999999999999984
No 38
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=67.87 E-value=6.9 Score=31.52 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|++|++.|++.|.|+.
T Consensus 208 ~~~i~~~~~~L~~AkrPvil~G~g~~ 233 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPYIYTGGGVI 233 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcc
Confidence 45688999999999999999999996
No 39
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=67.39 E-value=7.4 Score=31.16 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+.+++++++|.++++.+++.|.|+..
T Consensus 184 ~~i~~~~~~L~~A~rP~i~~G~g~~~ 209 (579)
T TIGR03457 184 TSLAQAARLLAEAKFPVIISGGGVVM 209 (579)
T ss_pred HHHHHHHHHHHhCCCCEEEECcCccc
Confidence 45788999999999999999999853
No 40
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=67.28 E-value=6.3 Score=24.31 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 33 KIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 33 ~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
.++++++.|.++++ |+++|.|.|.
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~ 25 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSG 25 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchH
Confidence 46788899999876 5677888764
No 41
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=66.92 E-value=7 Score=31.46 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+|+.|.|+-
T Consensus 205 ~~v~~a~~~L~~AkrPvil~G~g~~ 229 (585)
T CHL00099 205 KRIEQAAKLILQSSQPLLYVGGGAI 229 (585)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCc
Confidence 4688899999999999999999984
No 42
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=66.77 E-value=3.1 Score=27.52 Aligned_cols=14 Identities=50% Similarity=0.693 Sum_probs=12.3
Q ss_pred CcEEEEccCCCCcc
Q psy8974 45 KHVVLHTGAGISTS 58 (79)
Q Consensus 45 ~~ivvltGAGiSt~ 58 (79)
++|.+++.||+||+
T Consensus 2 k~IlLvC~aGmSTS 15 (102)
T COG1440 2 KKILLVCAAGMSTS 15 (102)
T ss_pred ceEEEEecCCCcHH
Confidence 57899999999985
No 43
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=66.52 E-value=7.7 Score=31.04 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCCcc
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiSt~ 58 (79)
.+.+++++++|.++++.+++.|.|+..+
T Consensus 193 ~~~i~~a~~~L~~A~rPvi~~G~g~~~~ 220 (574)
T PRK07979 193 KGQIKRALQTLVAAKKPVVYVGGGAINA 220 (574)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccc
Confidence 3568899999999999999999999643
No 44
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=66.48 E-value=7 Score=31.24 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
...+++++++|.++++.+++.|.|+.
T Consensus 200 ~~~i~~~~~~L~~AkrPvil~G~g~~ 225 (578)
T PRK06112 200 PQRLAEAASLLAQAQRPVVVAGGGVH 225 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcc
Confidence 35578889999999999999999974
No 45
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=66.27 E-value=6.7 Score=29.49 Aligned_cols=27 Identities=22% Similarity=0.577 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhC-CcEEEEccCCCCcc
Q psy8974 32 KKIKVLSEWIDKA-KHVVLHTGAGISTS 58 (79)
Q Consensus 32 ~~~~~l~~~l~~s-~~ivvltGAGiSt~ 58 (79)
+.+..|++++..+ .+|.++.||||..+
T Consensus 156 eg~~~l~~li~~a~gri~Im~GaGV~~~ 183 (241)
T COG3142 156 EGLDLLKRLIEQAKGRIIIMAGAGVRAE 183 (241)
T ss_pred hhHHHHHHHHHHhcCCEEEEeCCCCCHH
Confidence 4567888999877 89999999999743
No 46
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=65.86 E-value=6.5 Score=32.01 Aligned_cols=47 Identities=26% Similarity=0.516 Sum_probs=31.0
Q ss_pred ccCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhC------CcEEEEcc-CCCC
Q psy8974 7 EGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKA------KHVVLHTG-AGIS 56 (79)
Q Consensus 7 ~~ls~~~~kg~~g~~e~~d~~~~~~~~~~~l~~~l~~s------~~ivvltG-AGiS 56 (79)
+.-.||.+|- .|...++-..-..+++++.+||+.. ++|++||| +|.+
T Consensus 4 ~~~~~W~~ky---~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~G 57 (519)
T PF03215_consen 4 DESEPWVEKY---APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCG 57 (519)
T ss_pred cccCccchhc---CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCC
Confidence 3445555552 3554455555567899999999852 57999999 5654
No 47
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=65.74 E-value=7 Score=31.40 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|+++++.+++.|.|+.
T Consensus 187 ~~~v~~~~~~L~~AkrPvil~G~g~~ 212 (575)
T TIGR02720 187 VEAVTRAVQTLKAAERPVIYYGIGAR 212 (575)
T ss_pred HHHHHHHHHHHHcCCCcEEEECcchh
Confidence 35688999999999999999999985
No 48
>PRK07586 hypothetical protein; Validated
Probab=65.53 E-value=7.6 Score=30.48 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.|++.|.|+.
T Consensus 185 ~~v~~~~~~L~~A~rPvi~~G~g~~ 209 (514)
T PRK07586 185 AAVEAAAAALRSGEPTVLLLGGRAL 209 (514)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCccc
Confidence 5688899999999999999999985
No 49
>PLN02470 acetolactate synthase
Probab=65.29 E-value=7.4 Score=31.28 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|.+|++.+++.|.|+.
T Consensus 202 ~~~i~~~~~~L~~A~rPvI~~G~g~~ 227 (585)
T PLN02470 202 KSQLEQIVRLISESKRPVVYVGGGCL 227 (585)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCChh
Confidence 35688999999999999999999985
No 50
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=64.78 E-value=2.9 Score=26.26 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=11.5
Q ss_pred cEEEEccCCCCcc
Q psy8974 46 HVVLHTGAGISTS 58 (79)
Q Consensus 46 ~ivvltGAGiSt~ 58 (79)
+|++.+|+|++|+
T Consensus 4 kILvvCgsG~~TS 16 (94)
T PRK10310 4 KIIVACGGAVATS 16 (94)
T ss_pred eEEEECCCchhHH
Confidence 6999999999875
No 51
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=64.75 E-value=8.1 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|+++++.|++.|.|+.
T Consensus 211 ~~~v~~~~~~L~~AkrPvI~~G~g~~ 236 (616)
T PRK07418 211 PRQINAALKLIEEAERPLLYVGGGAI 236 (616)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 35688999999999999999999985
No 52
>PRK08617 acetolactate synthase; Reviewed
Probab=64.50 E-value=8.3 Score=30.60 Aligned_cols=25 Identities=40% Similarity=0.416 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|+++++.+|+.|.|+.
T Consensus 189 ~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (552)
T PRK08617 189 EDINYLAELIKNAKLPVLLLGMRAS 213 (552)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4578889999999999999999974
No 53
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=64.29 E-value=8.5 Score=30.83 Aligned_cols=26 Identities=31% Similarity=0.217 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
...+++++++|.++++.|++.|.|+.
T Consensus 193 ~~~i~~~~~~L~~A~rPvil~G~g~~ 218 (572)
T PRK08979 193 KGQIKRGLQALLAAKKPVLYVGGGAI 218 (572)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35688899999999999999999985
No 54
>PRK06154 hypothetical protein; Provisional
Probab=64.24 E-value=9 Score=30.82 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+++.|.|+.
T Consensus 202 ~~i~~aa~~L~~A~rPvil~G~g~~ 226 (565)
T PRK06154 202 VEVVEAAALLLAAERPVIYAGQGVL 226 (565)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4588999999999999999999996
No 55
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=64.15 E-value=9.2 Score=30.90 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.+|++.+++.|.|+.
T Consensus 190 ~~i~~~~~~L~~AkrPvIl~G~g~~ 214 (588)
T TIGR01504 190 AQIEKAVEMLNAAERPLIVAGGGVI 214 (588)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCcc
Confidence 5688999999999999999999986
No 56
>PRK07064 hypothetical protein; Provisional
Probab=64.11 E-value=8.1 Score=30.49 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.++++.++|.++++.+++.|.|+.
T Consensus 190 ~~~i~~~~~~l~~AkrPvi~~G~g~~ 215 (544)
T PRK07064 190 AAAVAELAERLAAARRPLLWLGGGAR 215 (544)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCChH
Confidence 35678889999999999999999984
No 57
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=64.02 E-value=9.3 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
...++.++++|.+|++.++++|.|+.
T Consensus 187 ~~~i~~a~~~L~~A~rPvil~G~g~~ 212 (588)
T PRK07525 187 EQSLAEAAELLSEAKFPVILSGAGVV 212 (588)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35688899999999999999999985
No 58
>PRK11269 glyoxylate carboligase; Provisional
Probab=63.96 E-value=9 Score=30.84 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+++.|.|+.
T Consensus 191 ~~i~~~~~~L~~AkrPvil~G~g~~ 215 (591)
T PRK11269 191 AQIEKALEMLNAAERPLIVAGGGVI 215 (591)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCCc
Confidence 4688899999999999999999985
No 59
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=63.32 E-value=13 Score=29.68 Aligned_cols=28 Identities=11% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
...+.++++.++|++|++.+++.|.|+.
T Consensus 186 ~~~~~v~~~~~~l~~AkrPvi~~G~g~~ 213 (535)
T TIGR03394 186 ALDACADEVLARMRSATSPVMMVCVEVR 213 (535)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEChhhc
Confidence 3456788999999999999999999985
No 60
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=63.24 E-value=9.1 Score=31.00 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+|+.|.|+.
T Consensus 219 ~~i~~~~~~L~~AkrPlIl~G~g~~ 243 (612)
T PRK07789 219 KQIREAAKLIAAARRPVLYVGGGVI 243 (612)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4588899999999999999999994
No 61
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.17 E-value=9.8 Score=30.65 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
..+++++++|+++++.+|+.|.|+..
T Consensus 202 ~~~~~~~~~L~~A~rPvIl~G~g~~~ 227 (570)
T PRK06725 202 MKLREVAKAISKAKRPLLYIGGGVIH 227 (570)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCccc
Confidence 45888999999999999999999853
No 62
>PRK08322 acetolactate synthase; Reviewed
Probab=63.06 E-value=9.6 Score=30.10 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|++|++.+|+.|.|+.
T Consensus 184 ~~i~~~~~~l~~A~rPviv~G~g~~ 208 (547)
T PRK08322 184 KAIERAAEAIQAAKNPLILIGAGAN 208 (547)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCcc
Confidence 4678889999999999999999984
No 63
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=62.76 E-value=9.4 Score=30.19 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|+++++.+++.|.|+.
T Consensus 194 ~~~~~~~~~L~~AkrPvIl~G~g~~ 218 (530)
T PRK07092 194 AALARLGDALDAARRPALVVGPAVD 218 (530)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCcc
Confidence 4578889999999999999999985
No 64
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=62.33 E-value=9.7 Score=30.82 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+++.|.|+.
T Consensus 200 ~~l~~a~~~L~~A~rPvil~G~g~~ 224 (595)
T PRK09107 200 EAITEAVELLANAKRPVIYSGGGVI 224 (595)
T ss_pred HHHHHHHHHHHhCCCcEEEECCccc
Confidence 4688999999999999999999985
No 65
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=62.16 E-value=9 Score=29.62 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.++.++++|+++++.+++.|.|+.
T Consensus 198 ~~~i~~~~~~l~~AkrPvi~~G~g~~ 223 (432)
T TIGR00173 198 PESLDELWDRLNQAKRGVIVAGPLPP 223 (432)
T ss_pred hhhHHHHHHHHhhcCCcEEEEcCCCc
Confidence 34688889999999999999999985
No 66
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=62.10 E-value=10 Score=30.22 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|.++++.+++.|.|+.
T Consensus 193 ~~~~~~~~~~L~~AkrPvi~~G~g~~ 218 (554)
T TIGR03254 193 PDSVDRAVELLKDAKRPLILLGKGAA 218 (554)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 35688999999999999999999985
No 67
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=61.97 E-value=10 Score=29.93 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+.++.++++|++|++.|++.|.|+..
T Consensus 183 ~~i~~~~~~l~~A~rPvi~~G~g~~~ 208 (539)
T TIGR02418 183 DAIDEVAEAIQNAKLPVLLLGLRASS 208 (539)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCc
Confidence 35788889999999999999999853
No 68
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=61.91 E-value=9.7 Score=30.52 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
..+++++++|.++++.+++.|.|+.
T Consensus 198 ~~i~~~~~~L~~A~rPvil~G~g~~ 222 (566)
T PRK07282 198 MQIKKILKQLSKAKKPVILAGGGIN 222 (566)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCcC
Confidence 4588999999999999999999995
No 69
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=61.72 E-value=11 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
.+.++.++++|+++++.+++.|.|+..
T Consensus 207 ~~~~~~~~~~L~~AkrPvi~~G~g~~~ 233 (569)
T PRK08327 207 PEDIARAAEMLAAAERPVIITWRAGRT 233 (569)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecccCC
Confidence 356889999999999999999999853
No 70
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=61.31 E-value=11 Score=30.09 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.||+.|.|+.
T Consensus 195 ~~~~~~~~~L~~A~rPvil~G~g~~ 219 (572)
T PRK06456 195 LALKKAAEILINAERPIILVGTGVV 219 (572)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCCc
Confidence 4578889999999999999999984
No 71
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=61.27 E-value=11 Score=30.16 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
.+.+++++++|.++++.+++.|.|+..
T Consensus 190 ~~~i~~~~~~L~~A~rPviv~G~g~~~ 216 (563)
T PRK08527 190 SRQIKKAAEAIKEAKKPLFYLGGGAIL 216 (563)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 356888999999999999999999853
No 72
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=60.78 E-value=11 Score=29.94 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
..+++++++|.+|++.+|+.|.|+-
T Consensus 189 ~~i~~~~~~L~~AkrPvi~~G~g~~ 213 (558)
T TIGR00118 189 LQIKKAAELINLAKKPVILVGGGVI 213 (558)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCcc
Confidence 4578889999999999999999984
No 73
>PRK12474 hypothetical protein; Provisional
Probab=60.67 E-value=10 Score=29.93 Aligned_cols=26 Identities=8% Similarity=0.143 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|.++++.|++.|.|+.
T Consensus 188 ~~~i~~~~~~L~~A~rPvil~G~g~~ 213 (518)
T PRK12474 188 AETVERIAALLRNGKKSALLLRGSAL 213 (518)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCccc
Confidence 35688999999999999999999985
No 74
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=60.56 E-value=10 Score=30.02 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|+++++.+|+.|.|+.
T Consensus 184 ~~l~~~~~~L~~AkrPvIl~G~g~~ 208 (548)
T PRK08978 184 AELEQARALLAQAKKPVLYVGGGVG 208 (548)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcc
Confidence 4577888999999999999999985
No 75
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=60.20 E-value=11 Score=27.03 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=27.2
Q ss_pred cCCCH-HHHHHHHHHHHHHHHhCCcEEEEccCCCCccCC
Q psy8974 23 TFDSK-EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (79)
Q Consensus 23 ~~d~~-~~~~~~~~~l~~~l~~s~~ivvltGAGiSt~sG 60 (79)
++|+. +.+.+--++|++.++.+++++||.|+--...-|
T Consensus 98 vtdPkG~~is~vk~~L~~~~r~~~eV~v~iGSReGiP~G 136 (173)
T PF14419_consen 98 VTDPKGDPISEVKDKLAEDLRYAKEVVVFIGSREGIPRG 136 (173)
T ss_pred EECCCCCcHHHHHHHHHHHHhhCcEEEEEEEcccCCChh
Confidence 35665 345555678999999999999999986443333
No 76
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=59.92 E-value=10 Score=30.55 Aligned_cols=25 Identities=36% Similarity=0.679 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|+++++.+++.|.|+.
T Consensus 189 ~~i~~a~~~L~~A~rPvii~G~g~~ 213 (578)
T PRK06546 189 AEVRALADAINEAKKVTLFAGAGVR 213 (578)
T ss_pred HHHHHHHHHHHcCCCcEEEECcchH
Confidence 5678889999999999999999984
No 77
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=59.81 E-value=11 Score=30.01 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+++.|.|+.
T Consensus 195 ~~i~~~a~~L~~AkrPvil~G~g~~ 219 (561)
T PRK06048 195 QQIKRAAELIMKAERPIIYAGGGVI 219 (561)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4688999999999999999999986
No 78
>PLN02573 pyruvate decarboxylase
Probab=59.57 E-value=9.5 Score=30.83 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
....+++++++|++|++.+++.|.|+.
T Consensus 210 ~~~~~~~a~~~L~~AkrPvil~G~g~~ 236 (578)
T PLN02573 210 LEAAVEAAAEFLNKAVKPVLVGGPKLR 236 (578)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEChhhc
Confidence 345689999999999999999999985
No 79
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=59.45 E-value=10 Score=30.16 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 33 KIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 33 ~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.++.++++|+++++.|++.|.|+.
T Consensus 184 ~i~~~~~~L~~AkrPvii~G~g~~ 207 (549)
T PRK06457 184 DFSRAKELIKESEKPVLLIGGGTR 207 (549)
T ss_pred HHHHHHHHHHcCCCcEEEECcchh
Confidence 577888999999999999999974
No 80
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=59.36 E-value=5.3 Score=24.30 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.6
Q ss_pred CcEEEEccCCCCcc
Q psy8974 45 KHVVLHTGAGISTS 58 (79)
Q Consensus 45 ~~ivvltGAGiSt~ 58 (79)
+++++++|+|++++
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 46899999999874
No 81
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=59.22 E-value=12 Score=30.05 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+++++++|.++++.+++.|.|+-
T Consensus 190 ~~~i~~~~~~L~~AkrPvil~G~g~~ 215 (586)
T PRK06276 190 PLQIKKAAELIAEAERPVILAGGGVI 215 (586)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcC
Confidence 35688999999999999999999984
No 82
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=59.20 E-value=12 Score=29.90 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+|+.|.|+.
T Consensus 199 ~~i~~~~~~L~~AkrPvIl~G~g~~ 223 (564)
T PRK08155 199 ESIRDAAAMINAAKRPVLYLGGGVI 223 (564)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4578889999999999999999985
No 83
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=59.09 E-value=12 Score=29.81 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.++++.++|.++++.|++.|.|+-
T Consensus 194 ~~i~~~~~~l~~A~rPvi~~G~g~~ 218 (574)
T PRK06882 194 GQIKKALKALLVAKKPVLFVGGGVI 218 (574)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4588888999999999999999985
No 84
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=58.95 E-value=12 Score=30.00 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.|++.|.|+-
T Consensus 194 ~~i~~~~~~L~~A~rPvil~G~g~~ 218 (574)
T PRK06466 194 GQIRKAVEMLLAAKRPVIYSGGGVV 218 (574)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4688899999999999999999984
No 85
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=58.79 E-value=12 Score=29.75 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+++.|.|+.
T Consensus 192 ~~i~~~~~~L~~A~rPvi~~G~g~~ 216 (557)
T PRK08199 192 ADLARLAELLARAERPLVILGGSGW 216 (557)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcC
Confidence 4578889999999999999999984
No 86
>PRK13936 phosphoheptose isomerase; Provisional
Probab=58.13 E-value=15 Score=25.68 Aligned_cols=28 Identities=11% Similarity=0.238 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
.+++.++.+.+.+.++++|.++ |.|-|.
T Consensus 28 ~i~~a~~~~~~~l~~a~~I~i~-G~G~S~ 55 (197)
T PRK13936 28 PIAQAVELMVQALLNEGKILAC-GNGGSA 55 (197)
T ss_pred HHHHHHHHHHHHHHCCCEEEEE-eCcHhH
Confidence 3445566777888888888777 888763
No 87
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.72 E-value=13 Score=26.04 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGA 53 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGA 53 (79)
+-++.++.+.++|.+++++||.|+-
T Consensus 21 D~eeEve~ireyi~sA~r~vV~t~N 45 (156)
T COG4019 21 DKEEEVEKIREYIVSAKRIVVATNN 45 (156)
T ss_pred chHHHHHHHHHHHhccceEEEecCC
Confidence 3456788999999999999998873
No 88
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=57.47 E-value=13 Score=29.71 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
..+++++++|.++++.+|+.|.|+.
T Consensus 203 ~~i~~~~~~L~~A~rPvIl~G~g~~ 227 (571)
T PRK07710 203 LQIRKLVQAVSVAKKPVILAGAGVL 227 (571)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcC
Confidence 3578889999999999999999975
No 89
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=55.67 E-value=16 Score=24.64 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++| .+.|.|-|
T Consensus 21 ~~l~~~~~~i~~a~~I-~i~G~G~S 44 (179)
T cd05005 21 EELDKLISAILNAKRI-FVYGAGRS 44 (179)
T ss_pred HHHHHHHHHHHhCCeE-EEEecChh
Confidence 4578889999999774 56777866
No 90
>PRK08611 pyruvate oxidase; Provisional
Probab=54.80 E-value=15 Score=29.49 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|+++++.|++.|.|+.
T Consensus 191 ~~i~~~~~~L~~AkrPvil~G~g~~ 215 (576)
T PRK08611 191 KDIKKAAKLINKAKKPVILAGLGAK 215 (576)
T ss_pred HHHHHHHHHHHcCCCcEEEECcCcc
Confidence 3577889999999999999999985
No 91
>PRK05858 hypothetical protein; Provisional
Probab=54.23 E-value=18 Score=28.69 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.++.++++|.++++.+++.|.|+.
T Consensus 191 ~~i~~~~~~L~~AkrPvil~G~g~~ 215 (542)
T PRK05858 191 DALARAAGLLAEAQRPVIMAGTDVW 215 (542)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCcc
Confidence 4688889999999999999999985
No 92
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=52.92 E-value=16 Score=26.23 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+++++++++|.++++ |++.|.|.|
T Consensus 116 ~~l~~~~~~i~~a~~-I~i~G~G~s 139 (278)
T PRK11557 116 EKLHECVTMLRSARR-IILTGIGAS 139 (278)
T ss_pred HHHHHHHHHHhcCCe-EEEEecChh
Confidence 456778889999988 556677766
No 93
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=52.91 E-value=16 Score=24.52 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
++++++.++|.++++ |++.|.|.|
T Consensus 18 ~~~~~~~~~l~~a~~-I~i~G~G~S 41 (179)
T TIGR03127 18 EELDKLADKIIKAKR-IFVAGAGRS 41 (179)
T ss_pred HHHHHHHHHHHhCCE-EEEEecCHH
Confidence 468888899998886 566777765
No 94
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=51.71 E-value=9.1 Score=28.82 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCccCCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPD 63 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt~sGIPd 63 (79)
..+..+.++++.--+|||--|||+|.-||.--
T Consensus 113 knIk~~eDll~~gi~ivV~dGaG~sntsgtgv 144 (252)
T COG4588 113 KNIKGFEDLLKPGIGIVVNDGAGVSNTSGTGV 144 (252)
T ss_pred cccccHHHHhcCCceEEEeCCCcccCCCCcee
Confidence 34677889999999999999999999998543
No 95
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=50.90 E-value=17 Score=29.03 Aligned_cols=25 Identities=16% Similarity=0.480 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|+++++.|++.|.|++
T Consensus 189 ~~i~~~~~~L~~AkrPvii~G~g~~ 213 (574)
T PRK09124 189 EELRKLAALLNGSSNITLLCGSGCA 213 (574)
T ss_pred HHHHHHHHHHHcCCCCEEEECcChH
Confidence 5678889999999999999999874
No 96
>PRK08266 hypothetical protein; Provisional
Probab=50.71 E-value=19 Score=28.42 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.+++.|.|.+
T Consensus 193 ~~i~~~~~~L~~AkrPvIv~G~g~~ 217 (542)
T PRK08266 193 DAIAAAAALIAAAKNPMIFVGGGAA 217 (542)
T ss_pred HHHHHHHHHHHhCCCCEEEECCChh
Confidence 4577888999999999999999964
No 97
>PRK15482 transcriptional regulator MurR; Provisional
Probab=49.87 E-value=18 Score=26.15 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++ |.+.|.|.|
T Consensus 123 ~~l~~~~~~i~~A~~-I~i~G~G~S 146 (285)
T PRK15482 123 ARLQKIIEVISKAPF-IQITGLGGS 146 (285)
T ss_pred HHHHHHHHHHHhCCe-eEEEEeChh
Confidence 356778889999998 457788866
No 98
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=49.21 E-value=33 Score=24.19 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCCC
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAGI 55 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAGi 55 (79)
+++-.+.+.++....+.+++++|||-
T Consensus 23 i~~~a~~i~~~~~~g~~vvvV~ggG~ 48 (229)
T cd04239 23 LKEIAREIKEVVDLGVEVAIVVGGGN 48 (229)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCh
Confidence 33333334444444567899998875
No 99
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=48.61 E-value=9.5 Score=22.85 Aligned_cols=14 Identities=36% Similarity=0.760 Sum_probs=11.5
Q ss_pred CcEEEEccCCCCcc
Q psy8974 45 KHVVLHTGAGISTS 58 (79)
Q Consensus 45 ~~ivvltGAGiSt~ 58 (79)
+++++++|+|++++
T Consensus 1 ~~ilivC~~G~~tS 14 (89)
T cd05566 1 KKILVACGTGVATS 14 (89)
T ss_pred CEEEEECCCCccHH
Confidence 46899999999865
No 100
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=48.56 E-value=23 Score=25.03 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccC
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGA 53 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGA 53 (79)
-.+.++.+++.|.++++|||-|.-
T Consensus 21 k~EEv~~Ir~~I~nakkIvV~t~N 44 (154)
T PF11576_consen 21 KEEEVEAIREYILNAKKIVVATNN 44 (154)
T ss_dssp -HHHHHHHHHHHHH-S-EEE----
T ss_pred cHHHHHHHHHHHhcCceEEEecCC
Confidence 346788899999999999998753
No 101
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=47.92 E-value=32 Score=20.42 Aligned_cols=30 Identities=23% Similarity=0.593 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHh-----CCcEEEEccCCCCccCCC
Q psy8974 32 KKIKVLSEWIDK-----AKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 32 ~~~~~l~~~l~~-----s~~ivvltGAGiSt~sGI 61 (79)
+.+..|.+.|.. .+.+.|+||-|.....|+
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~ 44 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGV 44 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc
Confidence 334444444443 378999999998777775
No 102
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=47.87 E-value=18 Score=25.87 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+++++++++|.++++ |++.|.|.|.
T Consensus 116 ~~i~~~~~~i~~a~~-I~i~G~G~S~ 140 (284)
T PRK11302 116 SAINRAVDLLTQAKK-ISFFGLGASA 140 (284)
T ss_pred HHHHHHHHHHHcCCe-EEEEEcchHH
Confidence 457778888889987 5678888763
No 103
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=46.78 E-value=26 Score=25.75 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCCCCcc
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAGiSt~ 58 (79)
++++++++.++|.++.+-+++.|.|.|..
T Consensus 32 ~~~~l~~~~~~l~~a~~~I~i~G~G~S~~ 60 (326)
T PRK10892 32 INQDFTLACEKMFWCKGKVVVMGMGKSGH 60 (326)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCcHhHH
Confidence 34467788888888855578899997744
No 104
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=46.38 E-value=11 Score=28.59 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.3
Q ss_pred cEEEEccCCCCccCCCCCC
Q psy8974 46 HVVLHTGAGISTSAGIPDF 64 (79)
Q Consensus 46 ~ivvltGAGiSt~sGIPdf 64 (79)
..+..||+|+|.+-|+||-
T Consensus 37 ~ai~~ss~~va~slG~pD~ 55 (290)
T TIGR02321 37 GGIWGSGFELSASYAVPDA 55 (290)
T ss_pred CEEEECHHHHHHHCCCCCc
Confidence 3677899999988999995
No 105
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=46.06 E-value=11 Score=22.43 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=10.4
Q ss_pred cEEEEccCCCCcc
Q psy8974 46 HVVLHTGAGISTS 58 (79)
Q Consensus 46 ~ivvltGAGiSt~ 58 (79)
++++++|+|++++
T Consensus 1 kilvvC~~G~~tS 13 (86)
T cd05563 1 KILAVCGSGLGSS 13 (86)
T ss_pred CEEEECCCCccHH
Confidence 4788999998764
No 106
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=45.31 E-value=36 Score=23.38 Aligned_cols=31 Identities=42% Similarity=0.648 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCCCcc
Q psy8974 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s~~ivvltGAGiSt~ 58 (79)
.++.+-+..+.+.+++.+.|||.+=+|+|.+
T Consensus 89 ~~l~~~v~~i~~~~~~g~kVvVHC~~GigRS 119 (180)
T COG2453 89 EDLDKIVDFIEEALSKGKKVVVHCQGGIGRS 119 (180)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCchH
Confidence 5555666667777778889999999999954
No 107
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=45.00 E-value=37 Score=25.41 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+.+.++++.+.++++.+++.|-|+..
T Consensus 223 ~~i~~lA~~l~~a~~~~i~~g~g~~~ 248 (415)
T cd02761 223 ETILELAERLKNAKFGVIFWGLGLLP 248 (415)
T ss_pred HHHHHHHHHHHhCCceEEEEeccccc
Confidence 56888999999999999999988863
No 108
>PRK13937 phosphoheptose isomerase; Provisional
Probab=44.78 E-value=30 Score=23.82 Aligned_cols=29 Identities=28% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+.+++..+++.+.|+++++| .+.|.|-|.
T Consensus 22 ~~l~~aa~~i~~~l~~a~rI-~i~G~G~S~ 50 (188)
T PRK13937 22 EAIAKVAEALIEALANGGKI-LLCGNGGSA 50 (188)
T ss_pred HHHHHHHHHHHHHHHCCCEE-EEEeCcHhH
Confidence 45566677788888888885 567888774
No 109
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=42.46 E-value=36 Score=22.84 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCCccC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiSt~s 59 (79)
++..+.+.+.+.++++ |++.|.|-|...
T Consensus 20 ~~a~~~i~~~i~~~~~-I~i~G~G~S~~~ 47 (177)
T cd05006 20 EQAAQLLAEALLNGGK-ILICGNGGSAAD 47 (177)
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCcHHHHH
Confidence 3333344444444555 677888877543
No 110
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=42.14 E-value=31 Score=25.84 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
.+.++.+.+.|++.++ +++.|+|-|.
T Consensus 49 ~~av~~~~~~l~~ggr-I~~~GaGtSg 74 (299)
T PRK05441 49 AAAVDAAAAALRQGGR-LIYIGAGTSG 74 (299)
T ss_pred HHHHHHHHHHHHCCCE-EEEEcCcHHH
Confidence 3445555666666665 6789999875
No 111
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=42.06 E-value=16 Score=28.04 Aligned_cols=21 Identities=33% Similarity=0.684 Sum_probs=17.6
Q ss_pred cEEEEccCCCCccCCCCCCCC
Q psy8974 46 HVVLHTGAGISTSAGIPDFSG 66 (79)
Q Consensus 46 ~ivvltGAGiSt~sGIPdfR~ 66 (79)
..+.+||+|++.+-|+||+--
T Consensus 40 ~al~~sg~~vA~slG~pD~~~ 60 (289)
T COG2513 40 KALYLSGAGVAASLGLPDLGI 60 (289)
T ss_pred eEEEeccHHHHHhcCCCcccc
Confidence 356699999999999999853
No 112
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=41.38 E-value=37 Score=21.24 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCCcc
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiSt~ 58 (79)
.+..-.+-+.+.+++.++++|.+-+|+|.+
T Consensus 58 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS 87 (133)
T PF00782_consen 58 HLDQAVEFIENAISEGGKVLVHCKAGLSRS 87 (133)
T ss_dssp GHHHHHHHHHHHHHTTSEEEEEESSSSSHH
T ss_pred HHHHHHHhhhhhhcccceeEEEeCCCcccc
Confidence 333444444455556789999999999854
No 113
>KOG1970|consensus
Probab=40.88 E-value=33 Score=29.11 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=24.6
Q ss_pred CccCCCHHHHHHHHHHHHHHHHh--------CCcEEEEcc-CCCC
Q psy8974 21 AETFDSKEDFDKKIKVLSEWIDK--------AKHVVLHTG-AGIS 56 (79)
Q Consensus 21 ~e~~d~~~~~~~~~~~l~~~l~~--------s~~ivvltG-AGiS 56 (79)
|+..+.-..-..|+.++.+||+. -.+|+.+|| +|.+
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcG 122 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCG 122 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCC
Confidence 44444455556789999999981 246899998 5544
No 114
>PRK02947 hypothetical protein; Provisional
Probab=40.77 E-value=39 Score=24.42 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++..+.+++.|.++++|.++ |.|-|
T Consensus 24 e~i~~aa~lla~~i~~a~~I~i~-G~G~S 51 (246)
T PRK02947 24 EAIEKAADLIADSIRNGGLIYVF-GTGHS 51 (246)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE-cCcHH
Confidence 44555555666667777777654 76755
No 115
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=40.25 E-value=33 Score=25.67 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
.+-++.|+++++.+...+|+.|+||..
T Consensus 155 ~~g~~~L~~lv~~a~~~~Im~GgGV~~ 181 (248)
T PRK11572 155 EQGLSLIMELIAASDGPIIMAGAGVRL 181 (248)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCH
Confidence 355778888888777767999999973
No 116
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=39.62 E-value=21 Score=27.20 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=16.8
Q ss_pred HHHHHHhCCcEEEEccCCCCccC
Q psy8974 37 LSEWIDKAKHVVLHTGAGISTSA 59 (79)
Q Consensus 37 l~~~l~~s~~ivvltGAGiSt~s 59 (79)
..++|.+...+-|+.||||++.+
T Consensus 180 ~l~~i~e~~~vpVivdAGIgt~s 202 (267)
T CHL00162 180 NLQIIIENAKIPVIIDAGIGTPS 202 (267)
T ss_pred HHHHHHHcCCCcEEEeCCcCCHH
Confidence 34555555668999999999764
No 117
>PRK14558 pyrH uridylate kinase; Provisional
Probab=38.87 E-value=61 Score=22.94 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCC
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAG 54 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAG 54 (79)
+..-.++++++...-..+++++|+|
T Consensus 25 i~~la~~i~~~~~~g~~viiV~GgG 49 (231)
T PRK14558 25 VNYLVNEIKSVVEYGFKIGIVIGAG 49 (231)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcc
Confidence 3333444444444445788888776
No 118
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=38.86 E-value=36 Score=24.87 Aligned_cols=27 Identities=19% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+.++.+.+.|++.++ +++.|+|-|
T Consensus 34 ~I~~av~~~~~~l~~ggr-l~~~GaGtS 60 (257)
T cd05007 34 QIARAVDAAAERLRAGGR-LIYVGAGTS 60 (257)
T ss_pred HHHHHHHHHHHHHHcCCE-EEEEcCcHH
Confidence 344555566666766655 678999987
No 119
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=38.72 E-value=78 Score=18.12 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEccCC
Q psy8974 29 DFDKKIKVLSEWIDKAK-HVVLHTGAG 54 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~-~ivvltGAG 54 (79)
.....+..+.+++++.. .-..+||||
T Consensus 31 ~~~~~i~~~~~~~~~~Ga~~~~~sGsG 57 (85)
T PF08544_consen 31 VLTPEIDELKEAAEENGALGAKMSGSG 57 (85)
T ss_dssp HHHHHHHHHHHHHHHTTESEEEEETTS
T ss_pred HcCHHHHHHHHHHHHCCCCceecCCCC
Confidence 34456777888887777 678899994
No 120
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=38.46 E-value=65 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAG 54 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAG 54 (79)
.+.+-.+.++++.....++|++.|||
T Consensus 24 ~i~~~a~~i~~~~~~~~~~viVhGgG 49 (231)
T cd04254 24 VLNRIAREIKEVVDLGVEVAIVVGGG 49 (231)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 34444445555544456789999998
No 121
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=38.04 E-value=17 Score=23.40 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=9.9
Q ss_pred cEEEEccCCCCc
Q psy8974 46 HVVLHTGAGIST 57 (79)
Q Consensus 46 ~ivvltGAGiSt 57 (79)
+|++++|+|+|+
T Consensus 2 ~Ill~C~~GaSS 13 (99)
T cd05565 2 NVLVLCAGGGTS 13 (99)
T ss_pred EEEEECCCCCCH
Confidence 488899999875
No 122
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=37.39 E-value=45 Score=24.88 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+.+|++.+.++++.+++.|.|+.
T Consensus 228 ~~~i~~la~~l~~a~~~~i~~g~g~~ 253 (421)
T TIGR03129 228 KEKILELAEILKNAKFGVIFFGLGLT 253 (421)
T ss_pred HHHHHHHHHHHHhCCceEEEEecccc
Confidence 35688999999999998888888875
No 123
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=36.49 E-value=65 Score=22.15 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCCCccCCC
Q psy8974 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s~~ivvltGAGiSt~sGI 61 (79)
...++.++.+.+.+.++..++++.|-|=.|-||+
T Consensus 67 ~~~~~~~~~ir~~le~~d~~~i~~slgGGTGsG~ 100 (192)
T smart00864 67 EAAEESLDEIREELEGADGVFITAGMGGGTGTGA 100 (192)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeccCCCCccccH
Confidence 3444556778888889999999988887787775
No 124
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=36.39 E-value=41 Score=28.30 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGI 55 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGi 55 (79)
..++..+++|+.+++-+|+.|.|+
T Consensus 217 ~eL~~A~~lik~ak~PlIvaGGGv 240 (617)
T COG3962 217 RELADAAALIKSAKKPLIVAGGGV 240 (617)
T ss_pred HHHHHHHHHHHhcCCCEEEecCce
Confidence 467788899999999999999997
No 125
>PRK14717 putative glycine/sarcosine/betaine reductase complex protein A; Provisional
Probab=36.39 E-value=61 Score=21.61 Aligned_cols=35 Identities=43% Similarity=0.745 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCcEEEEcc------CCCCc---cCCCCCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTG------AGIST---SAGIPDFSGP 67 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltG------AGiSt---~sGIPdfR~~ 67 (79)
.+++.+++-. .+.++||+-| ||+.+ ..|=|+|-||
T Consensus 7 ~rvk~~aek~-g~eNvvV~lG~aeaEaaglaAETVt~GDPTfAGP 50 (107)
T PRK14717 7 KRIKELAEKY-GAENIVVILGAAEAEAAGLAAETVTNGDPTFAGP 50 (107)
T ss_pred HHHHHHHHhc-CCccEEEEecCcchhhccceeeeeccCCCccccc
Confidence 3344444433 3567777776 46643 4577999987
No 126
>KOG2904|consensus
Probab=36.28 E-value=34 Score=26.83 Aligned_cols=63 Identities=19% Similarity=0.378 Sum_probs=48.0
Q ss_pred CchhhhccCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhCCcEE------EEccCCC---CccCCCCC
Q psy8974 1 MSCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVV------LHTGAGI---STSAGIPD 63 (79)
Q Consensus 1 m~~~ya~~ls~~~~kg~~g~~e~~d~~~~~~~~~~~l~~~l~~s~~iv------vltGAGi---St~sGIPd 63 (79)
|-.-|.=+.-||.+-.-+-.|-++-+..+.++-++.+.+.+.++.+.. +.||.|. |-.+++|-
T Consensus 101 ~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~ 172 (328)
T KOG2904|consen 101 MPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQ 172 (328)
T ss_pred CChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCC
Confidence 445677777888888777788888888888888888888888776544 5788884 56777873
No 127
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=36.23 E-value=39 Score=27.36 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCccCCCCCCCCcc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH 68 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt~sGIPdfR~~~ 68 (79)
+.+.+++++++++++-+++-|-|++.+ +--+|.-+
T Consensus 233 ~~i~e~a~~mKna~Fg~if~GlGlt~S--~gk~rN~e 267 (429)
T COG1029 233 EEIEELADMMKNAKFGAIFVGLGLTSS--RGKHRNVE 267 (429)
T ss_pred HHHHHHHHHHhcCCcceEEEeeceeec--ccccccHH
Confidence 568899999999999999999998754 33455544
No 128
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=35.85 E-value=19 Score=27.25 Aligned_cols=39 Identities=21% Similarity=0.418 Sum_probs=26.5
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHHHHhC-CcEEEEccCCCCccCCCCCC
Q psy8974 17 KLGLAETFDSKEDFDKKIKVLSEWIDKA-KHVVLHTGAGISTSAGIPDF 64 (79)
Q Consensus 17 ~~g~~e~~d~~~~~~~~~~~l~~~l~~s-~~ivvltGAGiSt~sGIPdf 64 (79)
.+=.|.++|.-.. +++.++ =..+.+||+|+|...|+||.
T Consensus 14 ~l~~p~~~Da~SA---------ri~e~aGf~Ai~~sg~~~a~~lG~pD~ 53 (285)
T TIGR02317 14 ILQIPGAINAMAA---------LLAERAGFEAIYLSGAAVAASLGLPDL 53 (285)
T ss_pred cEEeCCCCCHHHH---------HHHHHcCCCEEEEcHHHHHHhCCCCCC
Confidence 4446777776421 223333 45778999999999999995
No 129
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=35.30 E-value=83 Score=24.88 Aligned_cols=38 Identities=34% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEccCCCC-ccCCCCCCCCcc
Q psy8974 25 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIS-TSAGIPDFSGPH 68 (79)
Q Consensus 25 d~~~~~~~~~~~l~~~l~~s~~ivvltGAGiS-t~sGIPdfR~~~ 68 (79)
-+++++++-++.|.+.|+.. +.+ -+| +-|-+||||+|.
T Consensus 428 it~~eid~~~~~l~~al~~~-----~~~-~~~~~~~~~~~~~~~~ 466 (466)
T PRK07030 428 ITPEQIDFLAEVASEGIDIA-----TRD-SVSVAVSDFPDFRDPG 466 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHH-----hhc-ceeEEeccCCccCCCC
Confidence 34466666666666666553 122 333 346799999874
No 130
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=35.05 E-value=86 Score=22.40 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKAK--HVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~--~ivvltGAGiSt~sGI 61 (79)
+|-+.+.+..+.+.... ++||+||+|=.=++|.
T Consensus 27 ~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~ 61 (248)
T PRK06072 27 EMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGA 61 (248)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCc
Confidence 44444444444444322 6899999996555664
No 131
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=34.33 E-value=80 Score=22.45 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCC
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAG 54 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAG 54 (79)
+.+-.+.++++....+.+|++.|||
T Consensus 26 i~~~a~~i~~~~~~~~~vviV~G~G 50 (233)
T TIGR02075 26 LNRIANEIKELVKMGIEVGIVIGGG 50 (233)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3333444444444446789999998
No 132
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=34.27 E-value=38 Score=20.45 Aligned_cols=32 Identities=9% Similarity=0.109 Sum_probs=21.1
Q ss_pred hCCcEEEEccCCCCccCCC-CCCCCcchhhhcc
Q psy8974 43 KAKHVVLHTGAGISTSAGI-PDFSGPHYWRRRV 74 (79)
Q Consensus 43 ~s~~ivvltGAGiSt~sGI-PdfR~~~~w~~~~ 74 (79)
...+++|++.-|+....+. |.+-|.++|...+
T Consensus 55 ~~gY~fi~d~~g~~l~hp~~p~~~G~n~~~~~D 87 (95)
T PF08269_consen 55 GDGYFFIYDMDGVVLAHPSNPELEGKNLSDLKD 87 (95)
T ss_dssp TTB--EEE-TTSBEEEESS-GGGTT-B-TT-B-
T ss_pred CCCeEEEEeCCCeEEEcCCCcccCCcccccCCC
Confidence 4678999999999888877 9899888887654
No 133
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=34.21 E-value=47 Score=24.20 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+++.+..+.|.+++.-||++|+|=|
T Consensus 26 ~~~~~a~~~i~~~~gkv~V~G~GkS 50 (202)
T COG0794 26 EDFVRAVELILECKGKVFVTGVGKS 50 (202)
T ss_pred HHHHHHHHHHHhcCCcEEEEcCChh
Confidence 4566777777788888899999976
No 134
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=33.68 E-value=21 Score=20.07 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=9.3
Q ss_pred CccCCCCCCCCcc
Q psy8974 56 STSAGIPDFSGPH 68 (79)
Q Consensus 56 St~sGIPdfR~~~ 68 (79)
...--|||||+..
T Consensus 25 ~~~y~IP~Y~~~~ 37 (41)
T PF12426_consen 25 TQPYYIPDYRGIP 37 (41)
T ss_pred cccccCCCCCCcc
Confidence 3444599999875
No 135
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=32.56 E-value=1.1e+02 Score=21.18 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
.+.+-++.++.+...-.++|++.|||...
T Consensus 14 ~~~~~~~~i~~l~~~~~~~viV~ggg~~~ 42 (248)
T cd02115 14 RLRNLARILVKLASEGGRVVVVHGAGPQI 42 (248)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCc
Confidence 33333344444333346788888887643
No 136
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=32.50 E-value=63 Score=24.26 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 34 IKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 34 ~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
++.+.+.|++..+ |++.|+|-|.
T Consensus 48 ~~~~~~~l~~ggr-l~~~GaG~Sg 70 (296)
T PRK12570 48 VDKIVAAFKKGGR-LIYMGAGTSG 70 (296)
T ss_pred HHHHHHHHHcCCe-EEEECCchhH
Confidence 3344455555544 7889999874
No 137
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=31.86 E-value=58 Score=25.09 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGI 55 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGi 55 (79)
.+.+.++++.+.++++.+++.|.|+
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~ 276 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLS 276 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCc
Confidence 3567888899999999999999886
No 138
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=31.60 E-value=56 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+++.++++.|.++++.|.+.|.|.|.
T Consensus 29 ~~~~~~~~~l~~~~~~I~i~G~G~S~ 54 (321)
T PRK11543 29 DDFVRAANIILHCEGKVVVSGIGKSG 54 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEEecChhH
Confidence 45777788888887777888988773
No 139
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=31.18 E-value=1e+02 Score=22.90 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sG 60 (79)
+|-..+.+..+.+.. .=++|||||+|=.=++|
T Consensus 32 ~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG 65 (298)
T PRK12478 32 PMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGG 65 (298)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEECCCCCcccC
Confidence 344444444444432 23789999999544444
No 140
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=31.06 E-value=74 Score=22.83 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+.+-.+.++++......+|+++|++++
T Consensus 21 ~~i~~~~~~i~~~~~~~~~viiV~sg~~~ 49 (251)
T cd04242 21 GRLASLVEQIAELRNQGKEVILVSSGAVA 49 (251)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCchh
Confidence 34444455555555555667777765554
No 141
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=31.05 E-value=22 Score=26.83 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.5
Q ss_pred cEEEEccCCCCccCCCCCC
Q psy8974 46 HVVLHTGAGISTSAGIPDF 64 (79)
Q Consensus 46 ~ivvltGAGiSt~sGIPdf 64 (79)
..+.+||+|+|...|+||-
T Consensus 40 ~ai~~ss~~~a~s~G~pD~ 58 (285)
T TIGR02320 40 DGIWSSSLTDSTSRGVPDI 58 (285)
T ss_pred CEEEechHHHHHHCCCCCc
Confidence 3677899999988999995
No 142
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=30.91 E-value=62 Score=23.74 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++.+++|.++++|+++. .|-|
T Consensus 118 ~~l~~av~~L~~A~rI~~~G-~g~S 141 (281)
T COG1737 118 EALERAVELLAKARRIYFFG-LGSS 141 (281)
T ss_pred HHHHHHHHHHHcCCeEEEEE-echh
Confidence 45777889999999998776 6655
No 143
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=30.66 E-value=62 Score=24.45 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+.++++.+..+++.+++.|.|+.
T Consensus 239 ~~i~~~a~~l~~a~~~~i~~G~g~~ 263 (414)
T cd02772 239 EEARKIAASLVSAERAAVFLGNLAQ 263 (414)
T ss_pred HHHHHHHHHHhcCCCeEEEEccchh
Confidence 4577888999999998888898885
No 144
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=30.53 E-value=93 Score=19.59 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=16.9
Q ss_pred HHHHHHHhCCcEEEEccCCCCccC
Q psy8974 36 VLSEWIDKAKHVVLHTGAGISTSA 59 (79)
Q Consensus 36 ~l~~~l~~s~~ivvltGAGiSt~s 59 (79)
-+.+.+...+.++|.+-+|++.+.
T Consensus 70 ~i~~~~~~~~~VlVHC~~G~~RS~ 93 (138)
T smart00195 70 FIEDAEKKGGKVLVHCQAGVSRSA 93 (138)
T ss_pred HHHHHhcCCCeEEEECCCCCchHH
Confidence 333444456889999999998554
No 145
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=30.38 E-value=43 Score=20.86 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCcEEEEccC
Q psy8974 33 KIKVLSEWIDKAKHVVLHTGA 53 (79)
Q Consensus 33 ~~~~l~~~l~~s~~ivvltGA 53 (79)
....+.++..+.++.|+|||=
T Consensus 96 s~~~l~~~~~d~~n~Ii~~gy 116 (126)
T PF10996_consen 96 SRHYLKRLASDPRNTIIFTGY 116 (126)
T ss_dssp HHHHHHHHTTSTTSEEEESSS
T ss_pred HHHHHHHHcCCCCCeEEEecC
Confidence 344566777889999999983
No 146
>PLN02591 tryptophan synthase
Probab=30.31 E-value=43 Score=24.73 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCcEEEEccCCCCcc
Q psy8974 34 IKVLSEWIDKAKHVVLHTGAGISTS 58 (79)
Q Consensus 34 ~~~l~~~l~~s~~ivvltGAGiSt~ 58 (79)
+.++.+.+++...+-|+.|.|||+.
T Consensus 177 ~~~~i~~vk~~~~~Pv~vGFGI~~~ 201 (250)
T PLN02591 177 VESLLQELKEVTDKPVAVGFGISKP 201 (250)
T ss_pred HHHHHHHHHhcCCCceEEeCCCCCH
Confidence 3444444554456666779999964
No 147
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.16 E-value=74 Score=25.20 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+.++++++.++++.+++.|.|+.
T Consensus 269 ~~I~~lA~~~a~~~~~~i~~g~g~~ 293 (565)
T cd02754 269 ADIREAARLFGEARKVMSLWTMGVN 293 (565)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCccc
Confidence 5688999999999999888888875
No 148
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=29.89 E-value=1.1e+02 Score=21.54 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCccCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt~sGI 61 (79)
..+.+..+.+....++||+||+|=.=++|.
T Consensus 32 ~~l~~~l~~~~~~~~vvvl~g~g~~F~~G~ 61 (229)
T PRK06213 32 DALNAALDQAEDDRAVVVITGQPGIFSGGF 61 (229)
T ss_pred HHHHHHHHHhhccCcEEEEeCCCCceEcCc
Confidence 333333333335568999999984444553
No 149
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=29.78 E-value=28 Score=22.22 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=11.6
Q ss_pred CcEEEEccCCCCcc
Q psy8974 45 KHVVLHTGAGISTS 58 (79)
Q Consensus 45 ~~ivvltGAGiSt~ 58 (79)
.+|++.+|+|+.++
T Consensus 2 ~KIL~aCG~GvgSS 15 (93)
T COG3414 2 IKILAACGNGVGSS 15 (93)
T ss_pred cEEEEECCCCccHH
Confidence 57899999999754
No 150
>PLN02888 enoyl-CoA hydratase
Probab=29.76 E-value=1.3e+02 Score=21.86 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEccCCCCccCCC
Q psy8974 28 EDFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sGI 61 (79)
.+|-..+.+..+.+... -++|||||+|=.=++|.
T Consensus 36 ~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~ 71 (265)
T PLN02888 36 RPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGV 71 (265)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCC
Confidence 34444555544444432 37899999995445554
No 151
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=29.71 E-value=1.3e+02 Score=21.53 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sGI 61 (79)
+|-+.+.+..+.+... -++||+||+|=.=.+|.
T Consensus 26 ~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~ 60 (255)
T PRK06563 26 AMLDDLALALGEYEADDELRVAVLFAHGEHFTAGL 60 (255)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCc
Confidence 4444444444444432 27899999995444553
No 152
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=29.54 E-value=76 Score=21.90 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 33 KIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 33 ~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
-+..+.-+++.-..+|+-||||++.
T Consensus 81 ~~~~~~il~r~rPdvii~nGpg~~v 105 (170)
T PF08660_consen 81 FLQSLRILRRERPDVIISNGPGTCV 105 (170)
T ss_pred HHHHHHHHHHhCCCEEEEcCCceee
Confidence 3444455556678899999999874
No 153
>PRK00358 pyrH uridylate kinase; Provisional
Probab=29.54 E-value=1.1e+02 Score=21.47 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCC
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAG 54 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAG 54 (79)
+.+-.+.++++....+.+++++|+|
T Consensus 25 i~~~~~~i~~~~~~g~~vvlV~gGG 49 (231)
T PRK00358 25 LDRIAEEIKEVVELGVEVAIVVGGG 49 (231)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3333444444444456788888876
No 154
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=29.48 E-value=1.2e+02 Score=21.73 Aligned_cols=33 Identities=18% Similarity=0.056 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+.. .-++|||||+|=.=.+|.
T Consensus 33 ~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~ 67 (260)
T PRK07827 33 RLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGA 67 (260)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCc
Confidence 444444444444443 237899999995545554
No 155
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=29.44 E-value=13 Score=19.46 Aligned_cols=7 Identities=71% Similarity=1.312 Sum_probs=5.7
Q ss_pred CCCCCCC
Q psy8974 59 AGIPDFS 65 (79)
Q Consensus 59 sGIPdfR 65 (79)
.|||||-
T Consensus 7 qgipdfl 13 (31)
T PF08109_consen 7 QGIPDFL 13 (31)
T ss_pred cccHHHH
Confidence 5899985
No 156
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=29.40 E-value=94 Score=18.89 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
-...++++.+++.+++.++++.=.|+++
T Consensus 6 K~~~v~~~~~~l~~~~~v~v~~~~~l~~ 33 (100)
T PF00466_consen 6 KEEIVEELKELLKKSKYVIVVDYNGLSA 33 (100)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEECTTSCH
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCH
Confidence 3455788899999999999988888765
No 157
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=29.31 E-value=1.1e+02 Score=22.00 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCCccCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiSt~sG 60 (79)
+|-..+.+..+.+...-++|||||+|=.=++|
T Consensus 29 ~~~~~l~~al~~~~~~vr~vvltg~g~~F~aG 60 (255)
T PRK08150 29 GLIAALRAAFARLPEGVRAVVLHGEGDHFCAG 60 (255)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEECCCCceecC
Confidence 34444444444444455789999998433444
No 158
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=29.22 E-value=81 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+++..+.+.+.+.++++|+++ |.|-|
T Consensus 26 ~i~~a~~~l~~~l~~~~rI~~~-G~GgS 52 (196)
T PRK10886 26 AISRAAMTLVQSLLNGNKILCC-GNGTS 52 (196)
T ss_pred HHHHHHHHHHHHHHcCCEEEEE-ECcHH
Confidence 3444455555666666777654 88766
No 159
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=29.22 E-value=18 Score=26.53 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=15.8
Q ss_pred cEEEEccCCCCccCCCCCC
Q psy8974 46 HVVLHTGAGISTSAGIPDF 64 (79)
Q Consensus 46 ~ivvltGAGiSt~sGIPdf 64 (79)
..+.+||+|+|.+-|+||-
T Consensus 31 ~ai~~sg~~~a~s~G~pD~ 49 (238)
T PF13714_consen 31 DAIATSGAGVAASLGYPDG 49 (238)
T ss_dssp SEEEEHHHHHHHHTTS-SS
T ss_pred CEEEechHHHHHHcCCCCC
Confidence 3578999999999999996
No 160
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=29.14 E-value=1.3e+02 Score=21.59 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhC--CcEEEEccCCCCccCC
Q psy8974 30 FDKKIKVLSEWIDKA--KHVVLHTGAGISTSAG 60 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sG 60 (79)
|-..+.+..+.+... =++|||||+|=.=++|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG 64 (262)
T PRK05995 32 VIAELTAAFRALDADDSVRAVVLAGAGKAFCAG 64 (262)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEECCCCccccC
Confidence 334444433444332 2789999999444455
No 161
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=29.12 E-value=1.2e+02 Score=21.73 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEccCCCCccCC
Q psy8974 28 EDFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAG 60 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sG 60 (79)
.+|-+.+.+..+.+.+ .-++|||||+|=.=++|
T Consensus 28 ~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG 62 (255)
T PRK09674 28 NALLTQLVNELEAAATDTSIGVCVITGNARFFAAG 62 (255)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecc
Confidence 3444444444444433 23789999998544555
No 162
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=29.05 E-value=59 Score=30.02 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+++++++|.++++.|++.|+|+.
T Consensus 512 ~~i~~a~~~L~~AkRPvIvaG~G~~ 536 (1655)
T PLN02980 512 GQITEVLEVIQEAKRGLLLIGAIHT 536 (1655)
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCc
Confidence 4578888999999999999999974
No 163
>PRK09939 putative oxidoreductase; Provisional
Probab=28.72 E-value=78 Score=27.02 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+++.++++++.++++.+++.|.|+..
T Consensus 346 ~~I~~~A~~~a~a~~~ii~~gmGitq 371 (759)
T PRK09939 346 TQIAELADAYAAAERTIICYGMGITQ 371 (759)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccc
Confidence 56889999999999999999988874
No 164
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.55 E-value=72 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
++++++++++.++++.+++.|.|+.
T Consensus 295 e~I~~~A~~~a~a~~~ii~~g~Gi~ 319 (574)
T cd02767 295 EEIEAFAAMYAKSERVVFVWGMGIT 319 (574)
T ss_pred HHHHHHHHHHHhCCCEEEEecchhc
Confidence 5688999999999999998887775
No 165
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=28.43 E-value=42 Score=21.60 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=14.3
Q ss_pred HHHHHHHhCCcEEEEccCCC
Q psy8974 36 VLSEWIDKAKHVVLHTGAGI 55 (79)
Q Consensus 36 ~l~~~l~~s~~ivvltGAGi 55 (79)
.+.+.|+.|..+|||.|.-.
T Consensus 63 ~I~~~i~~s~~~IVLig~~T 82 (130)
T PF08937_consen 63 KIRERIKNSSVTIVLIGPNT 82 (130)
T ss_dssp HHHHHHHTEEEEEEE--TT-
T ss_pred HHHHHHhcCCEEEEEeCCCc
Confidence 45778999999999998654
No 166
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=28.43 E-value=1.2e+02 Score=21.94 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+.. .-++||+||+|=.=.+|.
T Consensus 35 ~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~ 69 (275)
T PLN02664 35 DFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGI 69 (275)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCc
Confidence 444444444444432 237899999995444443
No 167
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=28.39 E-value=1.2e+02 Score=21.92 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCC-CCccCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAG-ISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAG-iSt~sG 60 (79)
+|-+.+.+..+.+.. .=++||+||+| =.=++|
T Consensus 35 ~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG 69 (262)
T PRK06144 35 AMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAG 69 (262)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCceecC
Confidence 334444444444433 23799999998 233444
No 168
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.38 E-value=77 Score=24.71 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+.++++.+.++++.+++.|.|+.
T Consensus 266 ~~i~~lA~~~~~~~~~~i~~g~g~~ 290 (512)
T cd02753 266 EDIREAARMYATAKSAAILWGMGVT 290 (512)
T ss_pred HHHHHHHHHHHhCCCeEEEeCchhh
Confidence 4578899999999999888887764
No 169
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=28.25 E-value=70 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+++.++++++..+++.+++.|-|+..
T Consensus 267 ~~I~~~A~~~a~~~~~~i~~g~g~~~ 292 (501)
T cd02766 267 EEIEELARLYGEAKPPSIRLGYGMQR 292 (501)
T ss_pred HHHHHHHHHHHhCCCcEEEecchhhh
Confidence 55889999999999999999988763
No 170
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=28.24 E-value=1.2e+02 Score=21.70 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCCCCccCCC
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAGiSt~sGI 61 (79)
|-..+.+..+.+...-++||+||+|=.=++|.
T Consensus 32 ~~~~L~~~l~~~~~~vr~vVl~g~g~~FsaG~ 63 (255)
T PRK07112 32 LIAECMDVLDRCEHAATIVVLEGLPEVFCFGA 63 (255)
T ss_pred HHHHHHHHHHHhhcCceEEEEEcCCCCcccCc
Confidence 33334433334444457899999885444443
No 171
>smart00463 SMR Small MutS-related domain.
Probab=28.03 E-value=1.3e+02 Score=17.52 Aligned_cols=16 Identities=31% Similarity=0.571 Sum_probs=12.2
Q ss_pred CcEEEEccCCCCccCC
Q psy8974 45 KHVVLHTGAGISTSAG 60 (79)
Q Consensus 45 ~~ivvltGAGiSt~sG 60 (79)
+.+.|+||.|-...-|
T Consensus 32 ~~~~II~G~G~~s~~g 47 (80)
T smart00463 32 QKLVIITGKGKHSLGG 47 (80)
T ss_pred ceEEEEEcccCCCccc
Confidence 5799999999755433
No 172
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=27.92 E-value=1.3e+02 Score=21.69 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEccCCCCccCC
Q psy8974 29 DFDKKIKVLSEWIDKAK--HVVLHTGAGISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~--~ivvltGAGiSt~sG 60 (79)
+|-..+.+..+.+.... ++|||||.|=.=.+|
T Consensus 33 ~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG 66 (272)
T PRK06142 33 AFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYG 66 (272)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEECCCCceecc
Confidence 44444444444444332 789999998544444
No 173
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=27.78 E-value=46 Score=26.94 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEccCCCCccC
Q psy8974 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 59 (79)
Q Consensus 27 ~~~~~~~~~~l~~~l~~s~~ivvltGAGiSt~s 59 (79)
+.+.++.+++.+++|.+||+.+++-++-.|.|+
T Consensus 62 ~v~~deAie~Aa~ILv~aKrPllyg~s~tscEA 94 (429)
T COG1029 62 PVDYDEAIEKAAEILVNAKRPLLYGWSSTSCEA 94 (429)
T ss_pred eccHHHHHHHHHHHHHhccCceEeccccchHHH
Confidence 467788999999999999999999988887664
No 174
>PRK00074 guaA GMP synthase; Reviewed
Probab=27.76 E-value=77 Score=25.59 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=26.7
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHHHHhCCcEEEEcc
Q psy8974 17 KLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTG 52 (79)
Q Consensus 17 ~~g~~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltG 52 (79)
.||.....+.....+++++.+.+.+++.+-+|.++|
T Consensus 189 i~~~~~~~~~~~~~~~~~~~l~~~v~~~~vlva~SG 224 (511)
T PRK00074 189 ICGCKGDWTMENFIEEAIEEIREQVGDKKVILGLSG 224 (511)
T ss_pred hcCCCCCccHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 566666677777778888888888887655666666
No 175
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=27.65 E-value=90 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHh---CCcEEEEccCCC
Q psy8974 32 KKIKVLSEWIDK---AKHVVLHTGAGI 55 (79)
Q Consensus 32 ~~~~~l~~~l~~---s~~ivvltGAGi 55 (79)
+.+.++++.|++ .+.++++.|+|-
T Consensus 18 ~~i~~~~~~i~~~~~~~~iiiV~GgG~ 44 (221)
T cd04253 18 DFIKEYANVLRKISDGHKVAVVVGGGR 44 (221)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCCH
Confidence 335555555553 357888999874
No 176
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=27.58 E-value=1.4e+02 Score=21.45 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHh-C--CcEEEEccCCCCccCC
Q psy8974 28 EDFDKKIKVLSEWIDK-A--KHVVLHTGAGISTSAG 60 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~-s--~~ivvltGAGiSt~sG 60 (79)
.+|-..+.+..+.+.. . =++|||||+|=.=++|
T Consensus 30 ~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG 65 (266)
T PRK05981 30 IDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTG 65 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccc
Confidence 3444555555555543 2 3789999998443444
No 177
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=27.51 E-value=77 Score=21.88 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEccCCC
Q psy8974 30 FDKKIKVLSEWIDKAKHVVLHTGAGI 55 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s~~ivvltGAGi 55 (79)
+.+-++.++.+.+...++||+.|+|-
T Consensus 19 ~~~~~~~i~~l~~~g~~vvvV~g~g~ 44 (242)
T PF00696_consen 19 LRELADDIALLSQLGIKVVVVHGGGS 44 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEECChh
Confidence 45555566666666788999999883
No 178
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=27.50 E-value=1.1e+02 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGI 55 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGi 55 (79)
.+.+-.+.++++..+ +.+++++|+|.
T Consensus 18 ~i~~i~~~i~~~~~~-~~viiV~ggG~ 43 (221)
T TIGR02076 18 FIKEFANILRKLSDE-HKVGVVVGGGK 43 (221)
T ss_pred HHHHHHHHHHHHHhC-CeEEEEECCcH
Confidence 333333444444333 67888888875
No 179
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=27.49 E-value=1.3e+02 Score=21.47 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEccCCCCccCC
Q psy8974 28 EDFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAG 60 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sG 60 (79)
.+|-..+.+..+.+... =++|||||+|=.=++|
T Consensus 29 ~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG 63 (254)
T PRK08252 29 AAVAQGLAAALDELDADPDLSVGILTGAGGTFCAG 63 (254)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcC
Confidence 34444444444444433 3789999998544444
No 180
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=27.30 E-value=93 Score=22.68 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+.++++++.++++.+++.|.|+.
T Consensus 231 ~~i~~la~~~~~~~~~~i~~g~~~~ 255 (374)
T cd00368 231 ETIRALAREFAAAKRAVILWGMGLT 255 (374)
T ss_pred HHHHHHHHHHHhCCCeEEEeccccc
Confidence 5688899999999999999998874
No 181
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=27.26 E-value=51 Score=22.27 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=26.8
Q ss_pred CchhhhccCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhCCcEEEEccCC
Q psy8974 1 MSCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAG 54 (79)
Q Consensus 1 m~~~ya~~ls~~~~kg~~g~~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltGAG 54 (79)
|+.++..|+.|.+..-+=.+=.+.+-+..++..++.+.+ ...+.++|++|--
T Consensus 4 LAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~--~gi~~iivv~~~~ 55 (200)
T cd02508 4 LAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVN--SGIRNVGVLTQYK 55 (200)
T ss_pred eCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHH--CCCCEEEEEeCCC
Confidence 356788899987653221122222221233333444333 2357888888753
No 182
>PLN02600 enoyl-CoA hydratase
Probab=27.19 E-value=1.2e+02 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEccCC
Q psy8974 28 EDFDKKIKVLSEWIDK--AKHVVLHTGAG 54 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~--s~~ivvltGAG 54 (79)
.+|-+.+.+..+.+.. .-++|||||+|
T Consensus 21 ~~~~~~l~~~~~~~~~d~~vr~vVl~g~~ 49 (251)
T PLN02600 21 KEMLRGLRSAFEKIQADASARVVMLRSSV 49 (251)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEecCC
Confidence 3444455444444443 23789999984
No 183
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=26.93 E-value=68 Score=20.24 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 33 KIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 33 ~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.++++++.+.++++++ +.|.|-|
T Consensus 2 ~~~~~a~~~~~~~~i~-~~G~G~s 24 (153)
T cd05009 2 DIKELAEKLKEAKSFY-VLGRGPN 24 (153)
T ss_pred hHHHHHHHHhccCcEE-EEcCCCC
Confidence 3567778888887775 5677765
No 184
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=26.92 E-value=74 Score=21.22 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCCccCCCCCCCCcc
Q psy8974 44 AKHVVLHTGAGISTSAGIPDFSGPH 68 (79)
Q Consensus 44 s~~ivvltGAGiSt~sGIPdfR~~~ 68 (79)
.+.+|++||.|-. .|=.|...
T Consensus 61 ~~~vv~ltGvG~l----~P~~R~h~ 81 (126)
T PF08747_consen 61 DRDVVFLTGVGSL----FPFIRSHE 81 (126)
T ss_pred CCcEEEEeCcchh----cchhhHHH
Confidence 4679999999943 56666544
No 185
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=26.73 E-value=78 Score=21.47 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=27.2
Q ss_pred chhhhccCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhCCcEEEEccC
Q psy8974 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGA 53 (79)
Q Consensus 2 ~~~ya~~ls~~~~kg~~g~~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltGA 53 (79)
..+..+|+.|.++..+-.+=.+ ....-++..++.+.+. ..++|+|++|-
T Consensus 6 aaG~g~Rl~plt~~~pK~llpi-~g~~li~~~l~~l~~~--gi~~i~iv~~~ 54 (221)
T cd06422 6 AAGLGTRMRPLTDTRPKPLVPV-AGKPLIDHALDRLAAA--GIRRIVVNTHH 54 (221)
T ss_pred cCCCCCccccccCCCCCceeeE-CCEEHHHHHHHHHHHC--CCCEEEEEccC
Confidence 4577889999877654332222 2224444444443332 24678888774
No 186
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=26.68 E-value=98 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+++.++++.+.+++..+++.|-|+..
T Consensus 272 ~~I~~lA~~~a~~~~~~i~~g~G~~~ 297 (539)
T cd02762 272 ETIRRLAREFAAAPSAAVYGRLGVQT 297 (539)
T ss_pred HHHHHHHHHHhcCCceEEEECccccc
Confidence 56889999999999888888877753
No 187
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=26.27 E-value=2.2e+02 Score=19.41 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHh----CCcEEEEccCCCCcc
Q psy8974 29 DFDKKIKVLSEWIDK----AKHVVLHTGAGISTS 58 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~----s~~ivvltGAGiSt~ 58 (79)
.+.+-++.+.+.+.. .+.|+|.+-||++.+
T Consensus 79 ~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRS 112 (166)
T PTZ00242 79 VIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRA 112 (166)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHH
Confidence 344445555555544 678999999999854
No 188
>KOG1994|consensus
Probab=26.20 E-value=1.1e+02 Score=23.25 Aligned_cols=30 Identities=7% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+.+++.|..+.-+|++-++.++++|+-.++
T Consensus 222 ei~Ee~lt~in~~LR~eh~YC~fCG~~y~~ 251 (268)
T KOG1994|consen 222 EIIEERLTKINIFLRSEHYYCFFCGIKYKD 251 (268)
T ss_pred HHHHHHHHHHHHHHhccceEEEEeccccCC
Confidence 456677888899999999999999998654
No 189
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=26.18 E-value=1e+02 Score=19.77 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEcc
Q psy8974 26 SKEDFDKKIKVLSEWIDKAKHVVLHTG 52 (79)
Q Consensus 26 ~~~~~~~~~~~l~~~l~~s~~ivvltG 52 (79)
++++..++++++.+-+.+-+.++|||-
T Consensus 40 ~~~~~~~~l~~~i~~~~~~~~vivltD 66 (116)
T TIGR00824 40 NAETLQEKYNAALADLDTEEEVLFLVD 66 (116)
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 345566666665555555567888875
No 190
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=26.09 E-value=86 Score=21.48 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=25.1
Q ss_pred chhhhccCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhCCcEEEEcc
Q psy8974 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTG 52 (79)
Q Consensus 2 ~~~ya~~ls~~~~kg~~g~~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltG 52 (79)
..++..||.|.+..-+-.+=.+-+- ..++-.++.+.+ ..-+.|+|+|+
T Consensus 7 a~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~--~Gi~~I~iv~~ 54 (217)
T cd04197 7 ADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLAL--NGVEEVFVFCC 54 (217)
T ss_pred cCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHH--CCCCeEEEEeC
Confidence 4578899999877644222222222 244433443333 13356666665
No 191
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=26.00 E-value=37 Score=26.40 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=20.3
Q ss_pred cEEEEccCCCCccCCCCCCCCcc-hhhhccccc
Q psy8974 46 HVVLHTGAGISTSAGIPDFSGPH-YWRRRVEEL 77 (79)
Q Consensus 46 ~ivvltGAGiSt~sGIPdfR~~~-~w~~~~~~l 77 (79)
+-||+||.|+-+.-|. +.+ +|.....|.
T Consensus 6 ~~VvItG~g~~~p~g~----~~~~~w~~L~~G~ 34 (437)
T PLN02836 6 RRVVVTGLGLVTPLGC----GVETTWRRLIAGE 34 (437)
T ss_pred CCEEEEeeeEECCCCC----CHHHHHHHHHcCC
Confidence 3468999999887776 566 887765554
No 192
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=25.98 E-value=1.4e+02 Score=21.61 Aligned_cols=31 Identities=29% Similarity=0.252 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHh--CCcEEEEccCCCCccCC
Q psy8974 30 FDKKIKVLSEWIDK--AKHVVLHTGAGISTSAG 60 (79)
Q Consensus 30 ~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sG 60 (79)
|-+.+.+..+.+.. .-++|||||+|=.=.+|
T Consensus 38 ~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG 70 (276)
T PRK05864 38 VMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSG 70 (276)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCCCeecC
Confidence 33444444444432 23789999998443444
No 193
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=25.77 E-value=1.8e+02 Score=20.53 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEccCC
Q psy8974 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAG 54 (79)
Q Consensus 27 ~~~~~~~~~~l~~~l~~s~~ivvltGAG 54 (79)
++.++.-.+.++++.+...++++++|||
T Consensus 14 ~~~~~~~~~~i~~l~~~g~~~viV~sg~ 41 (239)
T cd04246 14 IERIKRVAERIKKAVKKGYQVVVVVSAM 41 (239)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3344444444444444445566655543
No 194
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=25.69 E-value=99 Score=21.64 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHh---CCcEEEEccC
Q psy8974 32 KKIKVLSEWIDK---AKHVVLHTGA 53 (79)
Q Consensus 32 ~~~~~l~~~l~~---s~~ivvltGA 53 (79)
..++++.+.|.. ..++|+++|.
T Consensus 3 ~~~~~l~~~L~~~~~~~~~v~I~G~ 27 (287)
T PF00931_consen 3 KEIEKLKDWLLDNSNEVRVVAIVGM 27 (287)
T ss_dssp HHHHHHHHHHHTTTTSSEEEEEEES
T ss_pred HHHHHHHHHhhCCCCCeEEEEEEcC
Confidence 456777777765 5678888884
No 195
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=25.47 E-value=27 Score=20.21 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=10.4
Q ss_pred cEEEEccCCCCcc
Q psy8974 46 HVVLHTGAGISTS 58 (79)
Q Consensus 46 ~ivvltGAGiSt~ 58 (79)
++++++|.|++++
T Consensus 2 kilivC~~G~~~s 14 (85)
T cd05568 2 KALVVCPSGIGTS 14 (85)
T ss_pred eEEEECCCCHHHH
Confidence 5788999998765
No 196
>PRK14557 pyrH uridylate kinase; Provisional
Probab=25.16 E-value=1.4e+02 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAG 54 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAG 54 (79)
.+.+-.+.+++++.....++|..|||
T Consensus 28 ~i~~~a~~i~~~~~~g~~vvVVvGgG 53 (247)
T PRK14557 28 RLEHIANEILSIVDLGIEVSIVIGGG 53 (247)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECCc
Confidence 44444555666666667788999997
No 197
>KOG2653|consensus
Probab=25.16 E-value=43 Score=27.35 Aligned_cols=42 Identities=38% Similarity=0.645 Sum_probs=28.5
Q ss_pred hhccCCCCCCCCCC----CCCccCCCHHHHHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 5 YAEGLSPYENKGKL----GLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 5 ya~~ls~~~~kg~~----g~~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
..+.|+||-.||.| |..++.|.... .++| +++=+.+.|.|+|
T Consensus 87 ~I~~L~p~LekgDiIIDGGNs~y~dT~RR----~~el------~k~GilfvG~GVS 132 (487)
T KOG2653|consen 87 FIEELVPYLEKGDIIIDGGNSEYQDTERR----CREL------AKKGILFVGSGVS 132 (487)
T ss_pred HHHHHHhhcCCCCEEEeCCcccCcchHHH----HHHH------HhcCcEEEecCcc
Confidence 35679999999987 56677666533 2222 2345678899998
No 198
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=24.94 E-value=1.6e+02 Score=21.06 Aligned_cols=33 Identities=12% Similarity=0.159 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+.+. =++||+||+|=.=.+|.
T Consensus 35 ~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~ 69 (261)
T PRK08138 35 EVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGA 69 (261)
T ss_pred HHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCc
Confidence 3344444444444332 27899999985444553
No 199
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=24.84 E-value=1.9e+02 Score=20.42 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEccC
Q psy8974 26 SKEDFDKKIKVLSEWIDKAKHVVLHTGA 53 (79)
Q Consensus 26 ~~~~~~~~~~~l~~~l~~s~~ivvltGA 53 (79)
+++.+.+-.+.+.++.+...++|++.|+
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~vvV~sg 40 (239)
T cd04261 13 SIERIKRVAERIKKRKKKGNQVVVVVSA 40 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 3444555455555555444555554444
No 200
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=24.80 E-value=49 Score=25.84 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=12.3
Q ss_pred CcEEEEccCCCCccC
Q psy8974 45 KHVVLHTGAGISTSA 59 (79)
Q Consensus 45 ~~ivvltGAGiSt~s 59 (79)
..+-|+.||||++.|
T Consensus 248 ~~vpVivdAGIg~~s 262 (326)
T PRK11840 248 ATVPVLVDAGVGTAS 262 (326)
T ss_pred CCCcEEEeCCCCCHH
Confidence 458899999999764
No 201
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=24.46 E-value=21 Score=29.14 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=21.3
Q ss_pred cEEEEcc------CCCCccCCCCCCCCcc-hhhh
Q psy8974 46 HVVLHTG------AGISTSAGIPDFSGPH-YWRR 72 (79)
Q Consensus 46 ~ivvltG------AGiSt~sGIPdfR~~~-~w~~ 72 (79)
-+|++.| +-++.+-|||.||||. +|.+
T Consensus 62 D~ilvpG~~~gd~~~i~~~~Gi~~~kGp~~~~Dl 95 (499)
T TIGR00284 62 DILLIPGLVRGDAKVVEEVTGRPVFKGTVEAVDI 95 (499)
T ss_pred cEEEeCCCccCCHHHHHHHhCCCEEECCcCHHHH
Confidence 3567777 4577899999999998 7765
No 202
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=24.35 E-value=96 Score=21.54 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhC---CcEEEEccCCCCcc
Q psy8974 32 KKIKVLSEWIDKA---KHVVLHTGAGISTS 58 (79)
Q Consensus 32 ~~~~~l~~~l~~s---~~ivvltGAGiSt~ 58 (79)
+.+++.+++|.++ .+-|++.|.|-|..
T Consensus 28 ~~i~~a~~~i~~al~~~~rI~i~G~G~S~~ 57 (192)
T PRK00414 28 HAIQRAAVLIADSFKAGGKVLSCGNGGSHC 57 (192)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 4566666777665 34446788887644
No 203
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=24.29 E-value=1.4e+02 Score=20.95 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHH----hCCcEEEEccCCC
Q psy8974 27 KEDFDKKIKVLSEWID----KAKHVVLHTGAGI 55 (79)
Q Consensus 27 ~~~~~~~~~~l~~~l~----~s~~ivvltGAGi 55 (79)
..-|++.-..+++++. ..++++|++|.|=
T Consensus 24 ~~LME~Ag~~va~~i~~~~~~~~~v~vl~G~GN 56 (205)
T TIGR00197 24 DLLMENAGKAVAQAVLQAFPLAGHVIIFCGPGN 56 (205)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCC
Confidence 3456655555555554 3478999999883
No 204
>cd02764 MopB_PHLH The MopB_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding (MopB) proteins. This CD is of the PHLH region homologous to the catalytic molybdopterin-binding subunit of MopB homologs.
Probab=24.06 E-value=1.2e+02 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
.+.+.++++++.++++.+++.|.|+..
T Consensus 305 ~~~I~~lA~~~a~~~~~~i~~G~g~~~ 331 (524)
T cd02764 305 DKALAALAKALAAAGKSLVVAGSELSQ 331 (524)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCCCCc
Confidence 456889999999888889999988764
No 205
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=23.95 E-value=92 Score=26.44 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 31 ~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
.+.+.++++.|.++++.+|+.|.|+.
T Consensus 480 ~~~i~~~A~~la~a~~~~I~~G~g~~ 505 (847)
T PRK08166 480 QAKADVIAQALAGAKKPLIISGTSAG 505 (847)
T ss_pred hHHHHHHHHHHhcCCCcEEEEeCccc
Confidence 34788999999999999999999874
No 206
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=23.90 E-value=47 Score=26.41 Aligned_cols=24 Identities=13% Similarity=-0.079 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
..++++.++|++ ++.+++.|.|+.
T Consensus 210 ~~~~~~~~~l~~-krPvii~G~g~~ 233 (568)
T PRK07449 210 VTSQRDWDIWRQ-KRGVVIAGRLSA 233 (568)
T ss_pred ccchhhhhhhcc-CCeEEEECCCCh
Confidence 447778888888 999999999985
No 207
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=23.84 E-value=1.4e+02 Score=18.97 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEccC
Q psy8974 25 DSKEDFDKKIKVLSEWIDKAKHVVLHTGA 53 (79)
Q Consensus 25 d~~~~~~~~~~~l~~~l~~s~~ivvltGA 53 (79)
+++++..+++.++.+-+...+.++|||-=
T Consensus 38 ~~~~~~~~~i~~~i~~~~~~~~viil~Dl 66 (122)
T cd00006 38 ESPDDLLEKIKAALAELDSGEGVLILTDL 66 (122)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 34566667776665555556778888864
No 208
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=23.80 E-value=1.7e+02 Score=20.84 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sGI 61 (79)
+|-+.+.+..+.+... =++|||||+|=.=++|.
T Consensus 28 ~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~ 62 (257)
T PRK07658 28 QVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGA 62 (257)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCc
Confidence 3444444444444322 37899999995444553
No 209
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=23.70 E-value=1.1e+02 Score=24.73 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+.+.++++.+.++++.+++.|.|+.
T Consensus 265 ~~i~~lA~~l~~~~~~~i~~g~g~~ 289 (671)
T TIGR01591 265 DLIREAARMYAKAGSAAILWGMGVT 289 (671)
T ss_pred HHHHHHHHHHhhCCCeEEEecCccc
Confidence 5688999999999988888877765
No 210
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=23.64 E-value=1.7e+02 Score=20.90 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sGI 61 (79)
+|-+.+.+..+.+... -++|||||+|=.=.+|.
T Consensus 33 ~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~ 67 (251)
T PRK06023 33 AMYATMAKALKAADADDAIRAHVFLGTEGCFSAGN 67 (251)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCc
Confidence 4444444444444332 37899999985545553
No 211
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=23.54 E-value=1.1e+02 Score=22.76 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiSt~sGI 61 (79)
..++..+++.+.+..+..++|+.|-|=-|-||+
T Consensus 70 ~a~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ 102 (304)
T cd02201 70 AAEESREEIKEALEGADMVFITAGMGGGTGTGA 102 (304)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeccCCCcchhH
Confidence 344556778888999999999988777777775
No 212
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=23.51 E-value=1.8e+02 Score=21.05 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+.. .=++|||||+|=.=++|.
T Consensus 39 ~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~ 73 (268)
T PRK07327 39 RMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGG 73 (268)
T ss_pred HHHHHHHHHHHHhhhCCCceEEEEECCCCCccccc
Confidence 333444443333432 237899999984444543
No 213
>KOG2728|consensus
Probab=23.51 E-value=1.1e+02 Score=23.83 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=19.0
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHh--CCcEEEEccCCCC
Q psy8974 20 LAETFDSKEDFDKKIKVLSEWIDK--AKHVVLHTGAGIS 56 (79)
Q Consensus 20 ~~e~~d~~~~~~~~~~~l~~~l~~--s~~ivvltGAGiS 56 (79)
.|+.+|++..+ ++++.++-.+ -++||++|-.|--
T Consensus 7 ~p~~~~d~~s~---~~eFi~~q~s~~~rrIVlVTSGGTt 42 (302)
T KOG2728|consen 7 VPESLDDPGSL---IEEFIKLQASLQGRRIVLVTSGGTT 42 (302)
T ss_pred CcccccchhHH---HHHHHHHHhhccCceEEEEecCCeE
Confidence 56777776433 3333333221 1569999988753
No 214
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=23.48 E-value=63 Score=22.36 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=14.1
Q ss_pred HHHHHHHHhCC---cEEEEccCCCCc
Q psy8974 35 KVLSEWIDKAK---HVVLHTGAGIST 57 (79)
Q Consensus 35 ~~l~~~l~~s~---~ivvltGAGiSt 57 (79)
+++.+++++.+ .-|++++||++.
T Consensus 42 ~~l~~~~~~~~~~~~~viIa~AG~~a 67 (150)
T PF00731_consen 42 ERLLEFVKEYEARGADVIIAVAGMSA 67 (150)
T ss_dssp HHHHHHHHHTTTTTESEEEEEEESS-
T ss_pred HHHHHHHHHhccCCCEEEEEECCCcc
Confidence 34555555442 248899999864
No 215
>PRK08139 enoyl-CoA hydratase; Validated
Probab=23.46 E-value=1.6e+02 Score=21.28 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sGI 61 (79)
+|-+.+.+..+.+... =++|||||+|=.=++|.
T Consensus 38 ~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~ 72 (266)
T PRK08139 38 AMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGH 72 (266)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEecCCCcceecc
Confidence 3444444444444332 37899999985445554
No 216
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=23.39 E-value=1.3e+02 Score=21.36 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhC--CcEEEEccCCC-----CccCCCCC
Q psy8974 32 KKIKVLSEWIDKA--KHVVLHTGAGI-----STSAGIPD 63 (79)
Q Consensus 32 ~~~~~l~~~l~~s--~~ivvltGAGi-----St~sGIPd 63 (79)
+.++++++.|++. .++|++.|+|- ....|++.
T Consensus 23 ~~l~~l~~~l~~l~g~~vvlVhGgg~~~~~~~~~~g~~~ 61 (252)
T cd04241 23 ENLERIARELAEAIDEKLVLVHGGGSFGHPKAKEYGLPD 61 (252)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCcccCHHHHHhCCCc
Confidence 3466677777764 57888889883 14567764
No 217
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=23.39 E-value=1.1e+02 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+++.++++++.++++.+++.|.|+.
T Consensus 332 ~~I~~~A~~~a~a~~~~i~~g~G~~ 356 (743)
T TIGR01701 332 EEILEFAKLLANSRRVVFCWAMGLT 356 (743)
T ss_pred HHHHHHHHHHHhCCCEEEEECcccc
Confidence 5688999999999999998888875
No 218
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=23.29 E-value=1.9e+02 Score=20.68 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sG 60 (79)
.|-..+.+..+.+... -++|||||+|=.=++|
T Consensus 32 ~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG 65 (263)
T PRK07799 32 EMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAG 65 (263)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECCCCccccc
Confidence 3444444444444322 3789999998433444
No 219
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.21 E-value=1.3e+02 Score=21.11 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=10.8
Q ss_pred CCcEEEEccCCCCc
Q psy8974 44 AKHVVLHTGAGIST 57 (79)
Q Consensus 44 s~~ivvltGAGiSt 57 (79)
...-|++++||++.
T Consensus 52 ~g~~viIa~AG~aa 65 (156)
T TIGR01162 52 RGIKVIIAGAGGAA 65 (156)
T ss_pred CCCeEEEEeCCccc
Confidence 34678999999874
No 220
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=23.21 E-value=1.4e+02 Score=21.79 Aligned_cols=25 Identities=4% Similarity=-0.033 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHh--CCcEEEEccCC
Q psy8974 30 FDKKIKVLSEWIDK--AKHVVLHTGAG 54 (79)
Q Consensus 30 ~~~~~~~l~~~l~~--s~~ivvltGAG 54 (79)
|-..+.+..+.+.. .-++|||||+|
T Consensus 39 ~~~eL~~al~~~~~d~~vr~vVltg~g 65 (278)
T PLN03214 39 MWRSLDDALTALENDPTVRGVVFASGL 65 (278)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEeCCC
Confidence 33444444444432 23789999987
No 221
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=23.11 E-value=1.8e+02 Score=20.89 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhC--CcEEEEccCC
Q psy8974 30 FDKKIKVLSEWIDKA--KHVVLHTGAG 54 (79)
Q Consensus 30 ~~~~~~~l~~~l~~s--~~ivvltGAG 54 (79)
|-..+.+..+.+... -++|||||+|
T Consensus 32 ~~~~l~~~l~~~~~d~~v~~vVl~g~g 58 (259)
T PRK06494 32 AHFELEEVFDDFAADPEQWVAIVTGAG 58 (259)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEcCC
Confidence 334444433333322 3789999988
No 222
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=22.98 E-value=2e+02 Score=17.79 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCcEEEEccCCCCcc
Q psy8974 33 KIKVLSEWIDKAKHVVLHTGAGISTS 58 (79)
Q Consensus 33 ~~~~l~~~l~~s~~ivvltGAGiSt~ 58 (79)
-++.+.+.+.+.+.++|.+=+|++.+
T Consensus 70 ~~~~i~~~~~~~~~vlVHC~~G~~Rs 95 (139)
T cd00127 70 AVDFIDDAREKGGKVLVHCLAGVSRS 95 (139)
T ss_pred HHHHHHHHHhcCCcEEEECCCCCchh
Confidence 34444445556789999999998754
No 223
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=22.97 E-value=1.8e+02 Score=21.38 Aligned_cols=32 Identities=34% Similarity=0.456 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sG 60 (79)
+|-..+.+..+.+.. .=++|||||+|=.=.+|
T Consensus 37 ~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG 70 (302)
T PRK08272 37 DTPLELRAAVERADLDPGVHVILVSGAGKGFCAG 70 (302)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccC
Confidence 344444444444432 23789999998544444
No 224
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=22.92 E-value=93 Score=21.83 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=26.5
Q ss_pred chhhhccCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhCCcEEEEccC
Q psy8974 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGA 53 (79)
Q Consensus 2 ~~~ya~~ls~~~~kg~~g~~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltGA 53 (79)
+.++..||.|.++.-+=.+-.+-+-| .++..++.+... ..+.|+|++|-
T Consensus 5 aaG~g~Rl~plt~~~pK~llpv~~~p-~i~~~~~~~~~~--gi~~i~iv~~~ 53 (253)
T cd02524 5 AGGLGTRLSEETELKPKPMVEIGGRP-ILWHIMKIYSHY--GHNDFILCLGY 53 (253)
T ss_pred ecCCccccCCccCCCCceEEEECCEE-HHHHHHHHHHhC--CCceEEEECCC
Confidence 45788999998775332222233333 333333333322 35778888873
No 225
>PRK00919 GMP synthase subunit B; Validated
Probab=22.87 E-value=1.1e+02 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEcc
Q psy8974 25 DSKEDFDKKIKVLSEWIDKAKHVVLHTG 52 (79)
Q Consensus 25 d~~~~~~~~~~~l~~~l~~s~~ivvltG 52 (79)
+....++++++.+.+.+.+.+-+|.++|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~kVlVa~SG 30 (307)
T PRK00919 3 DPEKFIEEAIEEIREEIGDGKAIIALSG 30 (307)
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence 4456677888999999988555555665
No 226
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.84 E-value=74 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
+.+++++++|.++++|. +.|.|.|.
T Consensus 128 ~~l~~~~~~i~~A~~I~-i~G~G~S~ 152 (292)
T PRK11337 128 DEFHRAARFFYQARQRD-LYGAGGSA 152 (292)
T ss_pred HHHHHHHHHHHcCCeEE-EEEecHHH
Confidence 45677888899999875 56777653
No 227
>PF06985 HET: Heterokaryon incompatibility protein (HET); InterPro: IPR010730 This entry represents a conserved region approximately 150 residues long within various heterokaryon incompatibility proteins that seem to be restricted to ascomycete fungi. Genetic differences in specific het genes prevent a viable heterokaryotic fungal cell from being formed by the fusion of filaments from two different wild-type strains []. Many proteins of this entry also contain the WD domain, G-beta IPR001680 from INTERPRO repeat and the NACHT IPR007111 from INTERPRO domain.
Probab=22.75 E-value=1.1e+02 Score=18.85 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEccCCCCc
Q psy8974 25 DSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIST 57 (79)
Q Consensus 25 d~~~~~~~~~~~l~~~l~~s~~ivvltGAGiSt 57 (79)
++..+...++....++-++|..++|..|+.-+.
T Consensus 55 ~d~~ek~~qi~~M~~IY~~A~~~iv~l~~~~~~ 87 (139)
T PF06985_consen 55 DDDEEKSRQIALMGDIYSNASLVIVWLGSDDAD 87 (139)
T ss_pred ccchhhHHHHhhhhHhhcCCCEEEEEeCCCCcc
Confidence 555677778888899999999999988877653
No 228
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=22.75 E-value=1.3e+02 Score=21.81 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=11.3
Q ss_pred CcEEEEccCCCCccCC
Q psy8974 45 KHVVLHTGAGISTSAG 60 (79)
Q Consensus 45 ~~ivvltGAGiSt~sG 60 (79)
-++|||||+|=.=++|
T Consensus 62 vr~vVltg~g~~FsaG 77 (277)
T PRK08258 62 VKAVVLTGAGGNFCSG 77 (277)
T ss_pred ceEEEEeCCCCCcccc
Confidence 3789999998544444
No 229
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=22.64 E-value=99 Score=21.31 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=9.1
Q ss_pred hhhccCCCCCCC
Q psy8974 4 NYAEGLSPYENK 15 (79)
Q Consensus 4 ~ya~~ls~~~~k 15 (79)
-|.+||++|..-
T Consensus 22 ~Y~kRl~~~~~~ 33 (157)
T PRK00103 22 EYLKRFPRYLKL 33 (157)
T ss_pred HHHHhcCccCCc
Confidence 589999988543
No 230
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=22.57 E-value=2.1e+02 Score=20.68 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sG 60 (79)
+|-+.+.+..+.+... =++|||||+|=.=.+|
T Consensus 31 ~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG 64 (258)
T PRK06190 31 ALRRALFAALAEADADDDVDVVVLTGADPAFCAG 64 (258)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEECCCCCccCC
Confidence 3444444444444332 3789999998443444
No 231
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=22.39 E-value=1.1e+02 Score=23.54 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEccCCCCccCCC
Q psy8974 28 EDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~s~~ivvltGAGiSt~sGI 61 (79)
...++..+++.+.+..+..++|+.|.|=-|-||+
T Consensus 86 ~~aee~~d~Ir~~le~~D~vfI~aglGGGTGSG~ 119 (349)
T TIGR00065 86 KAAEESRDEIRKLLEGADMVFITAGMGGGTGTGA 119 (349)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEeccCccchhH
Confidence 3445567788889999999999998887777774
No 232
>PRK10201 G/U mismatch-specific DNA glycosylase; Provisional
Probab=22.27 E-value=1.1e+02 Score=21.40 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEEccCCCC
Q psy8974 28 EDFDKKIKVLSEWIDK-AKHVVLHTGAGIS 56 (79)
Q Consensus 28 ~~~~~~~~~l~~~l~~-s~~ivvltGAGiS 56 (79)
+++.+-.+.|.+.|+. ...+|+|+|.++-
T Consensus 83 ~E~~~g~~~L~~~i~~~~P~~V~f~Gk~a~ 112 (168)
T PRK10201 83 QELRSGGRKLIEKIEDYQPQALAVLGKQAY 112 (168)
T ss_pred HHHHhhHHHHHHHHHHhCCCEEEEECHHHH
Confidence 3444446778888887 6789999998875
No 233
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=22.25 E-value=2.3e+02 Score=20.14 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
...+-+.+|...|++-++++|.+-+|+.
T Consensus 118 ~~~~i~~eL~~~L~~g~~V~vHC~GGlG 145 (168)
T PF05706_consen 118 AAWQILEELAARLENGRKVLVHCRGGLG 145 (168)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCC
Confidence 3445678899999999999999999875
No 234
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=22.22 E-value=2e+02 Score=20.60 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHh--CCcEEEEccCCCCccCC
Q psy8974 30 FDKKIKVLSEWIDK--AKHVVLHTGAGISTSAG 60 (79)
Q Consensus 30 ~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sG 60 (79)
|-..+.+..+.+.. .=++|||||+|=.=++|
T Consensus 32 ~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG 64 (266)
T PRK09245 32 AVDALVAACAAINADRSVRAVILTGAGTAFSSG 64 (266)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCCCcccC
Confidence 33444444444432 23789999998544455
No 235
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=22.19 E-value=34 Score=27.72 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.8
Q ss_pred CcEEEEccCCCCccCCCC
Q psy8974 45 KHVVLHTGAGISTSAGIP 62 (79)
Q Consensus 45 ~~ivvltGAGiSt~sGIP 62 (79)
+++|-++|+|||...-|.
T Consensus 365 ~R~v~F~gvGlsvg~EI~ 382 (426)
T PLN02349 365 RRLVGFTGVGLSVGEEID 382 (426)
T ss_pred eeeeeeecceeeeccccc
Confidence 789999999999877765
No 236
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=22.00 E-value=1.7e+02 Score=21.19 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCC-CccCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGI-STSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGi-St~sG 60 (79)
+|-..+.+..+.+... -++||+||+|- .=++|
T Consensus 40 ~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG 74 (273)
T PRK07396 40 KTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSG 74 (273)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeC
Confidence 3444444444444432 37899999983 33444
No 237
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=21.98 E-value=1.9e+02 Score=21.25 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sGI 61 (79)
+|-+.+.+..+.+.. .=++|||||+|=.=.+|.
T Consensus 31 ~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~ 65 (288)
T PRK08290 31 QMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGH 65 (288)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCC
Confidence 344444443333332 237899999995444443
No 238
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=21.92 E-value=1.4e+02 Score=21.05 Aligned_cols=33 Identities=42% Similarity=0.725 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCcEEEEcc------CCCC---ccCCCCCCCCc
Q psy8974 34 IKVLSEWIDKAKHVVLHTG------AGIS---TSAGIPDFSGP 67 (79)
Q Consensus 34 ~~~l~~~l~~s~~ivvltG------AGiS---t~sGIPdfR~~ 67 (79)
++.+++-. ...++||+-| ||+. ...|=|+|-||
T Consensus 58 vk~~aEk~-g~eNvvVllGaaeaEaaglaAETVt~GDPTfAGP 99 (154)
T PRK13265 58 VKDLAEKF-GAENVVVILGAAEAEAAGLAAETVTNGDPTFAGP 99 (154)
T ss_pred HHHHHHhc-CCccEEEEecccchhhccceeeeeccCCCccccc
Confidence 44444333 3567777777 4554 34577999887
No 239
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=21.86 E-value=2.7e+02 Score=19.25 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=20.0
Q ss_pred CccCCCHHHHHHHHHHHHHHHHhCCcEEEEcc
Q psy8974 21 AETFDSKEDFDKKIKVLSEWIDKAKHVVLHTG 52 (79)
Q Consensus 21 ~e~~d~~~~~~~~~~~l~~~l~~s~~ivvltG 52 (79)
|..+=+.....+.+..+...++....+++++|
T Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G 50 (269)
T TIGR03015 19 PDFFYPSKGHKRAMAYLEYGLSQREGFILITG 50 (269)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 34433445555667777777777677777776
No 240
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=21.81 E-value=98 Score=21.51 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCcEEEEccCCC
Q psy8974 34 IKVLSEWIDKAKHVVLHTGAGI 55 (79)
Q Consensus 34 ~~~l~~~l~~s~~ivvltGAGi 55 (79)
.+.+.+++++.+.++|..|||=
T Consensus 217 ~~~i~~~l~~~~~~fvvVGa~H 238 (259)
T PF01963_consen 217 AEKIEELLKEGGTVFVVVGAGH 238 (259)
T ss_pred HHHHHHHHhcCCCEEEEEcchh
Confidence 3445566666668999999984
No 241
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=21.80 E-value=49 Score=19.54 Aligned_cols=16 Identities=25% Similarity=0.661 Sum_probs=12.8
Q ss_pred ccCCCCCCCCcchhhh
Q psy8974 57 TSAGIPDFSGPHYWRR 72 (79)
Q Consensus 57 t~sGIPdfR~~~~w~~ 72 (79)
..||||+|=+..-|..
T Consensus 18 p~cGipthcS~ehw~~ 33 (55)
T PF13824_consen 18 PDCGIPTHCSEEHWED 33 (55)
T ss_pred CCCCCcCccCHHHHHH
Confidence 5799999988777764
No 242
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=21.58 E-value=2e+02 Score=20.55 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sG 60 (79)
+|-..+.+..+.+.. .-++|||||+|=.=.+|
T Consensus 31 ~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG 64 (257)
T PRK05862 31 ALMDELGAALAAFDADEGIGAIVITGSEKAFAAG 64 (257)
T ss_pred HHHHHHHHHHHHHhhCCCeeEEEEECCCCceECC
Confidence 344444444444432 23789999998544444
No 243
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=21.50 E-value=1.1e+02 Score=23.29 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=11.0
Q ss_pred HHhCCcEEEEccCCCC
Q psy8974 41 IDKAKHVVLHTGAGIS 56 (79)
Q Consensus 41 l~~s~~ivvltGAGiS 56 (79)
+....+-||||||=.+
T Consensus 105 l~~~~kPVVlTGAmrP 120 (335)
T PRK09461 105 LENLGKPVIVTGSQIP 120 (335)
T ss_pred HhCCCCCEEEeCCCCC
Confidence 3444778889998654
No 244
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.48 E-value=1e+02 Score=25.03 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+++.++++++.+++..+++.|-|+.
T Consensus 299 e~I~~lA~~~a~~~~~~i~~g~g~~ 323 (617)
T cd02770 299 ETIRRLAREIATTKPAAILQGWGPQ 323 (617)
T ss_pred HHHHHHHHHHHhCCCcEEEecccHH
Confidence 6689999999999988888887775
No 245
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=21.38 E-value=1.9e+02 Score=20.57 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=13.1
Q ss_pred CCcEEEEccCCCCccCCC
Q psy8974 44 AKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 44 s~~ivvltGAGiSt~sGI 61 (79)
.-++|||||+|=.=++|.
T Consensus 43 ~vr~vvl~g~g~~F~aG~ 60 (243)
T PRK07854 43 SARAIVLTGQGTVFCAGA 60 (243)
T ss_pred CceEEEEECCCCceeccc
Confidence 457899999996555554
No 246
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=21.31 E-value=2e+02 Score=20.76 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+... =++|||||+|=.=.+|.
T Consensus 33 ~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~ 67 (265)
T PRK05674 33 QMIRELILALDQVQSDASLRFLLLRGRGRHFSAGA 67 (265)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCc
Confidence 3334444444444322 37899999984434553
No 247
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=21.24 E-value=2.1e+02 Score=20.50 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+... -++|||||+|=.=++|.
T Consensus 32 ~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~ 66 (262)
T PRK07468 32 RMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGG 66 (262)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCc
Confidence 3334444433444322 27899999985445553
No 248
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=21.15 E-value=2.1e+02 Score=20.32 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+.. .-++|||||+|=.=.+|.
T Consensus 30 ~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~ 64 (249)
T PRK05870 30 EMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGA 64 (249)
T ss_pred HHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCc
Confidence 333444444444432 237899999985445553
No 249
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=20.94 E-value=1.7e+02 Score=20.87 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHH-hCCcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWID-KAKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~-~s~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+. ..-++|||||+|=.=++|.
T Consensus 31 ~~~~~l~~~~~~~~d~~v~~vVl~g~g~~F~aG~ 64 (262)
T PRK08140 31 EMHRELREALDQVEDDGARALLLTGAGRGFCAGQ 64 (262)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEECCCCCcccCc
Confidence 34444444444443 3347899999995545553
No 250
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=20.92 E-value=1.9e+02 Score=20.68 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCC-CCccCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAG-ISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAG-iSt~sG 60 (79)
+|-..+.+..+.+.. .=++|||||+| =.=.+|
T Consensus 31 ~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG 65 (260)
T PRK05809 31 ETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAG 65 (260)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeC
Confidence 333444444343432 23789999998 333444
No 251
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=20.90 E-value=2.3e+02 Score=20.14 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=11.8
Q ss_pred cEEEEccCCCCccCCC
Q psy8974 46 HVVLHTGAGISTSAGI 61 (79)
Q Consensus 46 ~ivvltGAGiSt~sGI 61 (79)
++|||||+|=.=++|.
T Consensus 49 r~vvl~g~g~~F~aG~ 64 (262)
T PRK07509 49 RAVILSGEGGAFCAGL 64 (262)
T ss_pred eEEEEECCCCCcCCCc
Confidence 7899999985555554
No 252
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=20.80 E-value=1.7e+02 Score=21.71 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhC--CcEEEEccCCC
Q psy8974 32 KKIKVLSEWIDKA--KHVVLHTGAGI 55 (79)
Q Consensus 32 ~~~~~l~~~l~~s--~~ivvltGAGi 55 (79)
..++.|.+.|+.+ .+++|+-|||-
T Consensus 83 k~~~~li~~l~~agv~RllVVGGAGS 108 (211)
T COG2910 83 KSIEALIEALKGAGVPRLLVVGGAGS 108 (211)
T ss_pred HHHHHHHHHHhhcCCeeEEEEcCccc
Confidence 3467788888874 78999999994
No 253
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=20.65 E-value=1.5e+02 Score=17.13 Aligned_cols=26 Identities=8% Similarity=0.288 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEccCC
Q psy8974 29 DFDKKIKVLSEWIDKAKHVVLHTGAG 54 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s~~ivvltGAG 54 (79)
...++|..|...|+...+..+..|.=
T Consensus 11 ~~~e~L~~l~~YLR~~~~YC~~Cg~~ 36 (55)
T PF13821_consen 11 SPEERLDKLLSYLREEHNYCFWCGTK 36 (55)
T ss_pred CHHHHHHHHHHHHHhhCceeeeeCCc
Confidence 45678999999999999999998864
No 254
>KOG1680|consensus
Probab=20.63 E-value=1.8e+02 Score=22.59 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCCccCC
Q psy8974 44 AKHVVLHTGAGISTSAG 60 (79)
Q Consensus 44 s~~ivvltGAGiSt~sG 60 (79)
+-.++||||.|=|=.||
T Consensus 81 s~~viVltG~gksFcsG 97 (290)
T KOG1680|consen 81 SVGVIVLTGSGKSFCSG 97 (290)
T ss_pred cccEEEEEcCCCccccc
Confidence 56799999999888887
No 255
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=20.59 E-value=2e+02 Score=20.45 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCC-CCccCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAG-ISTSAG 60 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAG-iSt~sG 60 (79)
+|-+.+.+..+.+.. .-++||+||+| =.=++|
T Consensus 30 ~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG 64 (260)
T PRK05980 30 ALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAG 64 (260)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcC
Confidence 444444444444432 23789999998 343444
No 256
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=20.58 E-value=2.1e+02 Score=20.53 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEccCC
Q psy8974 29 DFDKKIKVLSEWIDKA--KHVVLHTGAG 54 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~s--~~ivvltGAG 54 (79)
+|-+.+.+..+.+... -++|||||+|
T Consensus 29 ~~~~~l~~~l~~~~~d~~vr~vvl~g~g 56 (261)
T PRK03580 29 KTSFAMGEVFLNFRDDPELRVAIITGAG 56 (261)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 3334444444444332 3789999998
No 257
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=20.57 E-value=2.3e+02 Score=20.29 Aligned_cols=33 Identities=24% Similarity=0.144 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCCCCccCCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAGISTSAGI 61 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAGiSt~sGI 61 (79)
+|-..+.+..+.+.. .-++||+||+|=.=.+|.
T Consensus 30 ~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~ 64 (254)
T PRK08259 30 PTAAALADAFRAFDADDAASVAVLWGAGGTFCAGA 64 (254)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCc
Confidence 333444444444432 236899999985444553
No 258
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=20.36 E-value=1.8e+02 Score=19.16 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=17.5
Q ss_pred CccCCCHHHHHHHHHHHHHHHHh
Q psy8974 21 AETFDSKEDFDKKIKVLSEWIDK 43 (79)
Q Consensus 21 ~e~~d~~~~~~~~~~~l~~~l~~ 43 (79)
..+..+++++.+++..|.+.+++
T Consensus 3 dqyhEp~eeLs~kirdf~Ra~~S 25 (103)
T COG3461 3 DQYHEPPEELSEKIRDFSRARQS 25 (103)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH
Confidence 45677889999988888776653
No 259
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=20.20 E-value=1.4e+02 Score=21.39 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEccCC
Q psy8974 29 DFDKKIKVLSEWIDK--AKHVVLHTGAG 54 (79)
Q Consensus 29 ~~~~~~~~l~~~l~~--s~~ivvltGAG 54 (79)
+|-+.+.+..+.+.. .=++|||||+|
T Consensus 29 ~~~~~l~~al~~~~~d~~vr~vVl~g~g 56 (256)
T TIGR03210 29 QTCDELIHALKDAGYDRQIGVIVLAGAG 56 (256)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 344444444444432 23789999998
No 260
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=20.10 E-value=1.9e+02 Score=20.63 Aligned_cols=15 Identities=53% Similarity=0.705 Sum_probs=10.9
Q ss_pred cEEEEccCCC-CccCC
Q psy8974 46 HVVLHTGAGI-STSAG 60 (79)
Q Consensus 46 ~ivvltGAGi-St~sG 60 (79)
++|||||+|= .=.+|
T Consensus 50 ~~vVl~g~g~~~F~aG 65 (260)
T PRK07657 50 RVVILTGAGEKAFCAG 65 (260)
T ss_pred EEEEEecCCCCceEcC
Confidence 7899999983 44454
No 261
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=20.00 E-value=1.3e+02 Score=25.26 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCcEEEEccCCCC
Q psy8974 32 KKIKVLSEWIDKAKHVVLHTGAGIS 56 (79)
Q Consensus 32 ~~~~~l~~~l~~s~~ivvltGAGiS 56 (79)
+++.++++++.++++.+++.|.|+.
T Consensus 457 ~~I~~~A~~l~~a~~~~i~~G~g~~ 481 (776)
T PRK09129 457 AAARAIAQSLANGERAAILLGNLAV 481 (776)
T ss_pred HHHHHHHHHHhcCCCeEEEECcccc
Confidence 4688999999999999999998874
Done!