RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8974
(79 letters)
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding
domain, structural genomics, struc genomics consortium,
SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Length = 318
Score = 113 bits (284), Expect = 1e-32
Identities = 39/73 (53%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
S NYA GLSPY +KGK GL E FD E+ ++K+ L+ + ++ VV HTGAGIST++GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFSGPH-YWRRR 73
PDF GPH W
Sbjct: 62 PDFRGPHGVWTME 74
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Length = 355
Score = 112 bits (283), Expect = 3e-32
Identities = 39/73 (53%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 2 SCNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
S NYA GLSPY +KGK GL E FD E+ ++K+ L+ + ++ VV HTGAGIST++GI
Sbjct: 2 SVNYAAGLSPYADKGKCGLPEIFDPPEELERKVWELARLVWQSSSVVFHTGAGISTASGI 61
Query: 62 PDFSGPH-YWRRR 73
PDF GPH W
Sbjct: 62 PDFRGPHGVWTME 74
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1,
nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga
maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A*
2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A*
2h4h_A* 3jr3_A* 2h59_A*
Length = 246
Score = 67.5 bits (166), Expect = 1e-15
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRRVEEL 77
K+K + +++++ V TGAGIST +GIPDF GP+ +++ + +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNV 47
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 62.7 bits (153), Expect = 9e-14
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH--YWRR-RVE 75
L +F K+ ++ L++ I K KHVV TG+G S + IP F G W +
Sbjct: 20 NLMISFLKKDTQSITLEELAKIIKKCKHVVALTGSGTSAESNIPSFRGSSNSIWSKYDPR 79
Query: 76 EL 77
Sbjct: 80 IY 81
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family;
enzyme-substrate complex, protein binding,
transcription; HET: ALY MES; 2.00A {Archaeoglobus
fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Length = 253
Score = 60.3 bits (147), Expect = 6e-13
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
+ +I+ +E + K+KH V+ TGAGIS +GIP F G WR+ EE+
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRKYDPEEV 50
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 58.3 bits (141), Expect = 4e-12
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR 72
+ I + + A+ +++ TGAG+STS GIPDF ++ +
Sbjct: 29 RLSNFFTIDHFIQKLHTARKILVLTGAGVSTSLGIPDFRSSEGFYSK 75
>1m2k_A Silent information regulator 2; protein-ligand complex, gene
regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A*
1ici_A*
Length = 249
Score = 57.6 bits (140), Expect = 6e-12
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
L + I ++K++V TGAG+S +GIP F G W R R EEL
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNRYRPEEL 47
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 57.0 bits (138), Expect = 1e-11
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 31 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFSGPH--YWRR 72
+ ++ ++ + + V+ GAGISTS GIPDF P +
Sbjct: 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHN 50
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain,
rossmann fold domain; HET: SLL NAD; 1.55A {Homo
sapiens} PDB: 3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 56.8 bits (138), Expect = 1e-11
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
+ ++ KAKH+V+ +GAG+S +G+P F G YWR+ + ++L
Sbjct: 10 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDL 56
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo
sapiens} PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 54.3 bits (131), Expect = 1e-10
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 26 SKEDFDKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFSGPH 68
+ + ++ ++E I + VV+ GAGIST +GIPDF P
Sbjct: 3 ASDKGKLSLQDVAELIRARACQRVVVMVGAGISTPSGIPDFRSPG 47
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 48.3 bits (116), Expect = 1e-08
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 45 KHVVLHTGAGISTSAGIPDFSGPH-YWRR-RVEEL 77
V++ TGAGIS +GI F W RVE++
Sbjct: 2 PRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDV 36
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 48.1 bits (114), Expect = 2e-08
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 19 GLAETFDSKEDFDKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFSGPH--YWRR 72
G+A S + ++ ++ + + V+ GAGISTS GIPDF P +
Sbjct: 1 GMASMSVSTASTEMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTGLYHN 58
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation,
transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Length = 323
Score = 41.3 bits (97), Expect = 5e-06
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 31 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFSGPH--YWRR 72
+ ++ ++ ++ ++ + V+ GAGISTSAGIPDF P +
Sbjct: 28 ELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDN 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 28.0 bits (63), Expect = 0.30
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 29 DFDKKIKVLSEWIDKAKHVVL-----HT--GAGISTSAGIPDFS 65
DF+K+ K L + +++ + +L HT GAG + S G D +
Sbjct: 262 DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAG-AASGGQVDAA 304
>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol
phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus
musculus} PDB: 3rgq_A*
Length = 157
Score = 26.2 bits (58), Expect = 1.0
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 22 ETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSA 59
+ + K ++ ++ + V +H AG S SA
Sbjct: 67 TGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRSA 104
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural
genomics, PSI, protein structure initiative; 2.80A
{Escherichia coli} SCOP: d.144.1.6
Length = 328
Score = 26.2 bits (57), Expect = 1.0
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 62 PDFSGPHYWRRRVEELTK 79
P +G YW R+ +
Sbjct: 295 PWLTGEDYWLRQTATFIE 312
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate
biosynthesis pathway, isomera; 1.69A {Mytilus edulis}
SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Length = 295
Score = 25.3 bits (56), Expect = 2.0
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 51 TGAGISTSAGIPD 63
+G +S G+ D
Sbjct: 46 SGLSVSAQLGVRD 58
>2qiw_A PEP phosphonomutase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc
13032}
Length = 255
Score = 25.3 bits (56), Expect = 2.1
Identities = 2/13 (15%), Positives = 5/13 (38%)
Query: 51 TGAGISTSAGIPD 63
++ + G D
Sbjct: 47 GSHPVADATGSSD 59
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 25.2 bits (56), Expect = 2.7
Identities = 4/26 (15%), Positives = 17/26 (65%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56
+++++ L++ + + ++ L G+G +
Sbjct: 188 EEELRKLAQLLRYSSNIALMCGSGCA 213
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP
mutase/isocitrate lyase superfamily; HET: XYS PPR;
1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Length = 290
Score = 24.9 bits (55), Expect = 3.1
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 51 TGAGISTSAGIPD 63
+G +S S +PD
Sbjct: 42 SGFELSASYAVPD 54
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic,
ICL/PEPM superfamily, alpha-ketoglutarate LIG
isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Length = 275
Score = 24.6 bits (54), Expect = 3.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 51 TGAGISTSAGIPD 63
T AGI+ + G D
Sbjct: 43 TSAGIAHARGRTD 55
>2qyx_A Uncharacterized protein MJ0159; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.50A
{Methanocaldococcus jannaschii DSM2661} PDB: 3nek_A
Length = 238
Score = 24.8 bits (54), Expect = 3.7
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 11 PYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPD 63
E G + + F K+ D+ +L E G GIS GI +
Sbjct: 36 IDEADGDVIVNTAFIDKKYLDEAFDILKE--------AYKKGLGISDRFGIVE 80
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase;
1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Length = 738
Score = 24.7 bits (53), Expect = 3.9
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 18 LGLAETFD--SKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPHYW 70
L LAE+F + + K VL++ +DKA +L+ S G D G H+W
Sbjct: 604 LALAESFRHELNNNGNTKAGVLADALDKATEKLLNEEKSPSRKVGEIDNRGSHFW 658
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 24.5 bits (54), Expect = 3.9
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 42 DKAKHVVLHTGAGISTSAG-----IPDFSGPHYWRRRVEE 76
D+ VV+ TG+G + A + D + P W + E
Sbjct: 66 DRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWE 105
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center
for structural GENO infectious diseases, csgid; 2.00A
{Bacillus anthracis str} PDB: 3kz2_A
Length = 305
Score = 24.6 bits (54), Expect = 4.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 46 HVVLHTGAGISTSAGIPDF 64
+ +GA + S G+PD
Sbjct: 51 LALYLSGAAYTASKGLPDL 69
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 24.5 bits (54), Expect = 4.7
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 5 YAEGLSPYENKGKLGLAETFDSKEDFDKKIKVL 37
E + + GL S ED D+++ VL
Sbjct: 451 LKERKTIRQTVIDRGLIGDRLSIEDLDRRLDVL 483
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 24.4 bits (54), Expect = 5.1
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 3 CNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTS 58
CN A L+E + ++K+ V+ G+ + +
Sbjct: 168 CNIASEPCVRPGPVSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAA 223
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 24.5 bits (54), Expect = 5.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGI 55
+ I E ++ +K V++ G G
Sbjct: 192 AQDIDAAVELLNNSKRPVIYAGIGT 216
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 24.1 bits (53), Expect = 5.5
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56
+ + L++ + A+ +++ G G
Sbjct: 199 VQAVTRLTQTLLAAERPLIYYGIGAR 224
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 24.0 bits (53), Expect = 7.1
Identities = 6/54 (11%), Positives = 16/54 (29%)
Query: 3 CNYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGIS 56
CN A + + + ++ ++I V + G+ +
Sbjct: 168 CNIASMPCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLR 221
>2wxy_C Angiotensinogen, serpin A8; glycoprotein, hypertension,
vasoconstrictor, renin, serpins, vasoactive, hormone;
2.10A {Mus musculus} PDB: 2wxx_A 2wy0_C 2wxz_A 2wxz_C
2wy1_A
Length = 453
Score = 23.9 bits (52), Expect = 8.0
Identities = 7/60 (11%), Positives = 17/60 (28%), Gaps = 14/60 (23%)
Query: 17 KLGLAETFDSKEDF----DKKIKVLSEWIDKAKH-VVLH----TGAGISTSAGIPDFSGP 67
+ L ++ + D +V + + ++L +TS P
Sbjct: 365 EDKLPTLLGAEANLNNIGDTNPRV-----GEVLNSILLELKAGEEEQPTTSVQQPGSPEA 419
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell
division, cell cycle; 2.60A {Archaeoglobus fulgidus}
SCOP: c.37.1.10
Length = 263
Score = 23.7 bits (52), Expect = 8.2
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 15 KGKLGL-----AETFDSKEDFDKK--IKVLSEWIDKAKHVVLHTGAGISTSA 59
G G+ + + + + VL++ ++ ++L AG+ SA
Sbjct: 75 VGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGLERSA 126
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 23.7 bits (52), Expect = 8.3
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58
+ + A VL +
Sbjct: 209 AACADEVLAAMRSATSPVLMVCVEVRRY 236
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 23.9 bits (51), Expect = 8.4
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPHYW 70
+ K VL+ +D+A +L + G D G H++
Sbjct: 623 NPKALVLASTLDQATGKILDNNKSPARKVGEIDNRGSHFY 662
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 23.7 bits (52), Expect = 9.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 32 KKIKVLSEWIDKAKHVVLHTGAGISTS 58
K + + +AKH VL GA S
Sbjct: 204 KAADQAAALLAEAKHPVLVVGAAAIRS 230
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 23.7 bits (52), Expect = 9.6
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58
+ + E + A+ V+ G + +
Sbjct: 215 QVILSKIEESLKNAQKPVVIAGHEVISF 242
>3ikw_A Heparin lyase I; polysaccharide lyase, beta-jelly roll; 1.30A
{Bacteroides thetaiotaomicron} PDB: 3ilr_A* 3imn_A
3in9_A* 3ina_A*
Length = 374
Score = 23.7 bits (50), Expect = 9.7
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 4 NYAEGLSPYENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPD 63
N EG + E KG+ + + + +DF + + K V H G G D
Sbjct: 68 NTLEGYAKGETKGRAEFSYCYATSDDFRGLPADVYQKAQITK-TVYHHGKGACPQGSSRD 126
Query: 64 FS 65
+
Sbjct: 127 YE 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.406
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,334,873
Number of extensions: 66579
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 40
Length of query: 79
Length of database: 6,701,793
Length adjustment: 48
Effective length of query: 31
Effective length of database: 5,361,585
Effective search space: 166209135
Effective search space used: 166209135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)