RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8974
(79 letters)
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 63.0 bits (152), Expect = 3e-14
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR 72
+ +I+ +E + K+KH V+ TGAGIS +GIP F G WR+
Sbjct: 2 EDEIRKAAEILAKSKHAVVFTGAGISAESGIPTFRGEDGLWRK 44
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA
{Thermotoga maritima [TaxId: 2336]}
Length = 245
Score = 61.3 bits (148), Expect = 9e-14
Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRRRVEEL 77
K+K + +++++ V TGAGIST +GIPDF GP+ +++ + +
Sbjct: 2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNV 47
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 61.4 bits (148), Expect = 1e-13
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 33 KIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR 72
+ ++ KAKH+V+ +GAG+S +G+P F G YWR+
Sbjct: 4 SMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRK 44
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 55.6 bits (133), Expect = 1e-11
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 37 LSEWIDKAKHVVLHTGAGISTSAGIPDFSGPH-YWRR 72
L + I ++K++V TGAG+S +GIP F G W R
Sbjct: 5 LLKTIAESKYLVALTGAGVSAESGIPTFRGKDGLWNR 41
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 323
Score = 49.4 bits (117), Expect = 3e-09
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 31 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFSGPH--YWRR 72
+ ++ ++ ++ ++ + V+ GAGISTSAGIPDF P +
Sbjct: 28 ELTLEGVARYMQSERCRRVICLVGAGISTSAGIPDFRSPSTGLYDN 73
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 289
Score = 48.4 bits (114), Expect = 6e-09
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 31 DKKIKVLSEWI--DKAKHVVLHTGAGISTSAGIPDFSGPHYW 70
+ ++ ++ + + V+ GAGISTS GIPDF P
Sbjct: 5 EMSVRKIAAHMKSNPNAKVIFMVGAGISTSCGIPDFRSPGTG 46
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
coli [TaxId: 562]}
Length = 235
Score = 46.7 bits (110), Expect = 2e-08
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 43 KAKHVVLHTGAGISTSAGIPDFSGPH--YWRRRVEEL 77
K + +VL TGAGIS +GI F + RVE++
Sbjct: 1 KPRVLVL-TGAGISAESGIRTFRAADGLWEEHRVEDV 36
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 158
Score = 27.3 bits (60), Expect = 0.13
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 59
+K K ++ I KAK +L G ++
Sbjct: 6 LEKGKPVANMIKKAKRPLLIVGPDMTDEM 34
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 27.1 bits (59), Expect = 0.16
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTS 58
D+ + +L + ++ A + + G + +
Sbjct: 6 DQDLDILVKALNSASNPAIVLGPDVDAA 33
>d1ozha1 c.31.1.3 (A:188-366) Catabolic acetolactate synthase
{Klebsiella pneumoniae [TaxId: 573]}
Length = 179
Score = 27.2 bits (59), Expect = 0.20
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDF 64
D I +++ I +AK+ + G S
Sbjct: 7 DDAIDQVAKLIAQAKNPIFLLGLMASQPENSKAL 40
>d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
Length = 190
Score = 26.5 bits (58), Expect = 0.28
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGIST--SAGIPDFSGPHYWRR 72
++ + L E +D+ ++ T G PD + R
Sbjct: 47 PDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADRE 94
>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}
Length = 325
Score = 25.5 bits (55), Expect = 0.73
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 61 IPDFSGPHYWRRRVEEL 77
P +G YW R+
Sbjct: 291 FPWLTGEDYWLRQTATF 307
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 25.5 bits (56), Expect = 0.81
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 18 LGLAETFD--SKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDFSGPHYW 70
L LA + + + K VL+ +D+A +L + G D G H++
Sbjct: 607 LALAASLEHLGNAYKNPKALVLASTLDQATGKILDNNKSPARKVGEIDNRGSHFY 661
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 177
Score = 24.2 bits (51), Expect = 2.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 32 KKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDF 64
K + + +AKH VL GA S +P
Sbjct: 7 KAADQAAALLAEAKHPVLVVGAAAIRSGAVPAI 39
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana),
chloroplast [TaxId: 3702]}
Length = 179
Score = 24.2 bits (51), Expect = 2.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSA 59
D ++ + I ++K VL+ G G S+
Sbjct: 6 DSHLEQIVRLISESKKPVLYVGGGCLNSS 34
>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 275
Score = 24.0 bits (51), Expect = 2.2
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 51 TGAGISTSAGIPDFSGPHY 69
+G +S G+ D + +
Sbjct: 43 SGLSVSAQLGVRDSNEASW 61
>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas
mobilis [TaxId: 542]}
Length = 175
Score = 23.7 bits (50), Expect = 2.5
Identities = 3/38 (7%), Positives = 12/38 (31%)
Query: 27 KEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDF 64
+ + + ++I V + G+ + +
Sbjct: 5 EASLNAAVDETLKFIANRDKVAVLVGSKLRAAGAEEAA 42
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase
{Oxalobacter formigenes [TaxId: 847]}
Length = 175
Score = 23.4 bits (49), Expect = 3.4
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGISTSAGIPDF 64
+ I ++ I AK V+ G G + + +
Sbjct: 6 EDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEI 39
>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon
Methanosarcina thermophila [TaxId: 2210]}
Length = 201
Score = 23.6 bits (51), Expect = 3.6
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 41 IDKAKHVVLHTGAGISTSA 59
++ K + H G G S +A
Sbjct: 2 AEETKIITCHLGNGSSITA 20
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 23.1 bits (49), Expect = 5.6
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 29 DFDKKIKVLSEWIDKAKHVVLHTG-AGISTSAGIPDFSGPHYWRRRVEELTK 79
DF++ I L ID I+ + R + ELT+
Sbjct: 4 DFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRL------REKSVELTR 49
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 179
Score = 22.8 bits (48), Expect = 5.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 18 LGLAETFDSKEDFDKKIKVLSEWIDKAKHVV 48
GL S+E D K L+E + A +
Sbjct: 146 EGLPINDFSREKMDLTAKELAEEKETAFEFL 176
>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase
{Chlorobium tepidum [TaxId: 1097]}
Length = 240
Score = 22.8 bits (48), Expect = 6.3
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 45 KHVVLHTGAGISTSAGI 61
KH++L TGA GI
Sbjct: 1 KHILLITGA----GKGI 13
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus
plantarum [TaxId: 1590]}
Length = 183
Score = 22.7 bits (47), Expect = 6.7
Identities = 4/26 (15%), Positives = 13/26 (50%)
Query: 31 DKKIKVLSEWIDKAKHVVLHTGAGIS 56
+ + L++ + A+ +++ G G
Sbjct: 17 VQAVTRLTQTLLAAERPLIYYGIGAR 42
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 22.9 bits (48), Expect = 7.0
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 26 SKEDFDKKIKVLSEWIDKAK 45
+ ++++S+ D+AK
Sbjct: 405 EDAQIRQGLEIISQCFDEAK 424
>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme
disease spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 291
Score = 22.5 bits (48), Expect = 7.9
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 13 ENKGKLGLAETFDSKEDFDKKIKVLSEWIDKAKHVVLHTGAGISTSAGI 61
+ T + IK +SE +DK V S +A I
Sbjct: 47 ISSTTGKPDSTGSVGTAVEGAIKEVSELLDKLVKAVKTAEGASSGTAAI 95
>d1tiga_ d.68.1.1 (A:) Translation initiation factor IF3,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 88
Score = 22.0 bits (47), Expect = 8.9
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 29 DFDKKIKVLSEWIDKAKHVVLHT 51
DF+ K++ ++++K V
Sbjct: 16 DFNTKLRNARKFLEKGDKVKATI 38
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli
[TaxId: 562]}
Length = 103
Score = 21.9 bits (47), Expect = 9.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 45 KHVVLHTGAGISTS 58
KH+ L + AG+STS
Sbjct: 2 KHIYLFSSAGMSTS 15
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.133 0.406
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 331,856
Number of extensions: 13066
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 32
Length of query: 79
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 34
Effective length of database: 1,789,746
Effective search space: 60851364
Effective search space used: 60851364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)