RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8978
(252 letters)
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 282 bits (723), Expect = 9e-97
Identities = 84/238 (35%), Positives = 120/238 (50%), Gaps = 6/238 (2%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G ++ +WPW V+L + + CG LI+ W+++AAHC D +
Sbjct: 4 GTDADEGEWPWQVSL-HALGQGHICGASLISPNWLVSAAHCYID--DRGFRYSDPTQWTA 60
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG +D S+ + V + + +P F++ ++ DIAL++L K A+Y+S VRP+ LP
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPD 120
Query: 134 AGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGY 192
A F + VTGWG YGG + +L + I V T C Q I +C G
Sbjct: 121 ASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQITPRMMCVGFL 180
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
GG DSCQGDSGGPL D + GVVSWG GC + PGVY ++ + WI
Sbjct: 181 SGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKEN 238
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 281 bits (721), Expect = 2e-96
Identities = 74/240 (30%), Positives = 128/240 (53%), Gaps = 14/240 (5%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G + ++PW V+++R+ +FCGG +IN+RWV+ AAHC++ + + +
Sbjct: 4 GIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQG--------EAPALVSL 55
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
+GE+D S + + T ++ V + END+++++ + ++ V P+C P
Sbjct: 56 VVGEHDSSAASTVRQT-HDVDSIFVNENYDPATLENDVSVIKTAVAITFDINVGPICAPD 114
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAGG 191
+ Y + +GWGT++ GG VL V + + C ++ + I+D +CA
Sbjct: 115 PANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATD 174
Query: 192 YKG--GTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK-TPGVYVQVNKYLRWIYNT 248
G DSCQGDSGGPL ++ ++++G+VSWGIGC PGVY +V + WI +T
Sbjct: 175 NTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCASGYPGVYSRVGFHAGWITDT 234
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 277 bits (710), Expect = 9e-95
Identities = 71/241 (29%), Positives = 116/241 (48%), Gaps = 19/241 (7%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
GQ + + PW L E + FCGG +++E ++LTAAHC+ Q V
Sbjct: 4 GQECKDGECPWQALL-INEENEGFCGGTILSEFYILTAAHCLYQA----------KRFKV 52
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
R+G+ + + + + + RF+++ Y+ DIA+++L + V P CLP+
Sbjct: 53 RVGDRNTEQEEGGEAV-HEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPE 111
Query: 134 AG----DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCA 189
+ GIV+G+G G +S L + +P C+ S I + CA
Sbjct: 112 RDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCA 171
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYN 247
G D+CQGDSGGP + + D + + G+VSWG GC + G+Y +V +L+WI
Sbjct: 172 GYDTKQEDACQGDSGGPHVTRFKDT-YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDR 230
Query: 248 T 248
+
Sbjct: 231 S 231
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 278 bits (713), Expect = 9e-95
Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 28/269 (10%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDN---FCGGVLINERWVLTAAHCIKQ 57
CG + KI G + ++PW + + + CGG LIN R+++TAAHC+
Sbjct: 14 CGYQVEAD-KILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAG 72
Query: 58 KIDNALVLRRTSDLIVRLGEYDFSKVNET----------KVTDIPAAAMKVYPRFSE--Q 105
++ + VRLGE++ + + K D+ +P + + +
Sbjct: 73 RVLR----VVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSK 128
Query: 106 NYENDIALVQLSKKAQYNSFVRPVCLPQAG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEV 164
+ +DIAL++L+++ ++ +++RPVCLPQ + Q V GWG G S + ++
Sbjct: 129 DRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRT-ETGQYSTIKQKL 187
Query: 165 PIPVWRLTECRKQFSQ---NIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGV 221
+PV +C K F + S LCAG + DSC GDSGGPLL +R ++Q+ + G+
Sbjct: 188 AVPVVHAEQCAKTFGAAGVRVRSSQLCAG-GEKAKDSCGGDSGGPLLAERANQQFFLEGL 246
Query: 222 VSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
VS+G CG PG+Y +V KY WI
Sbjct: 247 VSFGATCGTEGWPGIYTKVGKYRDWIEGN 275
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 275 bits (705), Expect = 4e-94
Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 13/239 (5%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G ++ WPW+V L Y+ CG L++ W+++AAHC+ + S
Sbjct: 4 GSDAKEGAWPWVVGL--YYDDRLLCGASLVSSDWLVSAAHCVYGRNLEP------SKWTA 55
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG + S + + + + P ++ + +NDIA++ L K Y +++P+ LP+
Sbjct: 56 ILGLHMKSNLTSPQTVPRLIDEIVINPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPE 115
Query: 134 AGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAGG 191
F + + GWGT+ Y G +D+L E +P+ C++Q + I ++ +CAG
Sbjct: 116 ENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAGY 175
Query: 192 YKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
+GG DSCQGDSGGPL+ Q + +W + GV S+G C PGVY +V+++ WI +
Sbjct: 176 EEGGIDSCQGDSGGPLMCQE-NNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSF 233
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 272 bits (699), Expect = 3e-93
Identities = 73/245 (29%), Positives = 124/245 (50%), Gaps = 21/245 (8%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ ++ +PW V L + D FCGG ++NE+W++TAAHC++ + V
Sbjct: 4 GEDAKPGQFPWQVVL--NGKVDAFCGGSIVNEKWIVTAAHCVE----------TGVKITV 51
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRF--SEQNYENDIALVQLSKKAQYNSFVRPVCL 131
GE++ + T+ + + F + Y +DIAL++L + NS+V P+C+
Sbjct: 52 VAGEHNIEETEHTEQK-RNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICI 110
Query: 132 PQAGD---FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLC 188
F + G V+GWG + + G + VL + +P+ C + I ++ C
Sbjct: 111 ADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFTITNNMFC 170
Query: 189 AGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIY 246
AG ++GG DSCQGDSGGP + + + G++SWG C G+Y +V++Y+ WI
Sbjct: 171 AGFHEGGRDSCQGDSGGPHVTEVEGT-SFLTGIISWGEECAMKGKYGIYTKVSRYVNWIK 229
Query: 247 NTAKV 251
K+
Sbjct: 230 EKTKL 234
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 271 bits (694), Expect = 4e-92
Identities = 79/252 (31%), Positives = 126/252 (50%), Gaps = 19/252 (7%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G +E+ PW V L R+ ++ CG LI++RWVLTAAHC+ + +DL+V
Sbjct: 4 GSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTE--NDLLV 61
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSE-QNYENDIALVQLSKKAQYNSFVRPVCLP 132
R+G++ ++ + ++PR++ +N + DIAL++L K ++ ++ PVCLP
Sbjct: 62 RIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLP 121
Query: 133 QAGD----FYEDQIGIVTGWGTL------SYGGPRSDVLMEVPIPVWRLTECRKQFSQNI 182
G VTGWG L + G + VL V +P+ C+ I
Sbjct: 122 DRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRIRI 181
Query: 183 FDSNLCAG---GYKGGTDSCQGDSGGPLLLQRP-DKQWTIIGVVSWGIGCGK--TPGVYV 236
D+ CAG D+C+GDSGGP +++ P + +W +G+VSWG GC + G Y
Sbjct: 182 TDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYT 241
Query: 237 QVNKYLRWIYNT 248
V + +WI
Sbjct: 242 HVFRLKKWIQKV 253
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 271 bits (696), Expect = 5e-92
Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 19/265 (7%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKID 60
+I +G +E+ PW V L R+ ++ CG LI++RWVLTAAHC+
Sbjct: 21 ELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW 80
Query: 61 NALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSE-QNYENDIALVQLSKK 119
+ +DL+VR+G++ ++ + ++PR++ +N + DIAL++L K
Sbjct: 81 DKNFTE--NDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKP 138
Query: 120 AQYNSFVRPVCLPQAGD----FYEDQIGIVTGWGTL------SYGGPRSDVLMEVPIPVW 169
++ ++ PVCLP G VTGWG L + G + VL V +P+
Sbjct: 139 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 198
Query: 170 RLTECRKQFSQNIFDSNLCAG---GYKGGTDSCQGDSGGPLLLQRP-DKQWTIIGVVSWG 225
C+ I D+ CAG D+C+GDSGGP +++ P + +W +G+VSWG
Sbjct: 199 ERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWG 258
Query: 226 IGCGK--TPGVYVQVNKYLRWIYNT 248
GC + G Y V + +WI
Sbjct: 259 EGCDRDGKYGFYTHVFRLKKWIQKV 283
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 267 bits (686), Expect = 3e-91
Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 13/241 (5%)
Query: 14 GQASEVNDWPWLVALKRQYERDN--FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDL 71
G + + ++P+ ++ + + + FCG + NE + +TA HC+ S L
Sbjct: 4 GTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGD-----DYENPSGL 58
Query: 72 IVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCL 131
+ GE D S ++ I + + ++ F +NDI+L++LS +N V P+ L
Sbjct: 59 QIVAGELDMSVNEGSEQI-ITVSKIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIAL 117
Query: 132 PQAGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAG 190
P+ G IVTGWGT S GG DVL +V +P+ +CR + + I DS +CAG
Sbjct: 118 PEQGHTATGD-VIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAG 176
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
+GG DSCQGDSGGPL + G+VSWG GC + PGVY +V+ ++ WI
Sbjct: 177 VPEGGKDSCQGDSGGPLAASD-TGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKAN 235
Query: 249 A 249
A
Sbjct: 236 A 236
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 267 bits (684), Expect = 1e-90
Identities = 74/246 (30%), Positives = 113/246 (45%), Gaps = 22/246 (8%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + PW V L CGG LIN WV++AAHC + + +LI
Sbjct: 4 GKVCPKGECPWQVLL--LVNGAQLCGGTLINTIWVVSAAHCFDKIKN-------WRNLIA 54
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LGE+D S+ + + + A + + + +DIAL++L + V P+CLP+
Sbjct: 55 VLGEHDLSEHDGDEQS-RRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPE 113
Query: 134 AG----DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-----IFD 184
+ +V+GWG L G + LM + +P +C +Q + I +
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITE 173
Query: 185 SNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYL 242
CAG G DSC+GDSGGP W + G+VSWG GC GVY +V++Y+
Sbjct: 174 YMFCAGYSDGSKDSCKGDSGGPHATHYRGT-WYLTGIVSWGQGCATVGHFGVYTRVSQYI 232
Query: 243 RWIYNT 248
W+
Sbjct: 233 EWLQKL 238
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 272 bits (696), Expect = 2e-90
Identities = 76/275 (27%), Positives = 132/275 (48%), Gaps = 41/275 (14%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDN----FCGGVLINERWVLTAAHCIK 56
CG Q ++ G +++ PW+ L +Y++ CGG +I+ER++LTAAHC+
Sbjct: 111 CGNFLSQ--RVSNGYEVKLSSRPWMALL--RYQQFGESRFLCGGAMISERYILTAAHCVH 166
Query: 57 QKIDNALVLRRTSDLIVRLGEYDFSKVNET-----------KVTDIPAAAMKVYPRFSEQ 105
+ +RLGE+ S + V ++ ++ ++ +
Sbjct: 167 GL--------QNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYDAR 218
Query: 106 NYENDIALVQLSKKAQYNSFVRPVCLPQAGDF----YEDQIGIVTGWGTLSYGGPRSDVL 161
+ +DIAL++L++ + ++P+CLP + + VTGWGT G SDVL
Sbjct: 219 HIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT-ENGSSSDVL 277
Query: 162 MEVPIPVWRLTECRKQFSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQ-----RPDKQW 216
++ +P+ + C + + + + S LC G DSC+GDSGGPL +
Sbjct: 278 LQANVPLQPRSACSQAYRRAVPLSQLCV-GGGDLQDSCKGDSGGPLQAPAQYLGEYAPKM 336
Query: 217 TIIGVVSWG-IGCGK--TPGVYVQVNKYLRWIYNT 248
G+VS G + CG+ PG+Y V +Y++WI +T
Sbjct: 337 VEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDT 371
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 264 bits (678), Expect = 8e-90
Identities = 86/247 (34%), Positives = 129/247 (52%), Gaps = 25/247 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + D PW V L ++ CG VLI+ WVLTAAHC+ + L+V
Sbjct: 4 GKMTRRGDSPWQVVL-LDSKKKLACGAVLIHPSWVLTAAHCM----------DESKKLLV 52
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
RLGEYD + + ++ + + V+P +S+ +NDIAL+ L++ A + + P+CLP
Sbjct: 53 RLGEYDLRRWEKWELD-LDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPD 111
Query: 134 AG-----DFYEDQIGIVTGWGTLSYGGPRS-----DVLMEVPIPVWRLTECRKQFSQNIF 183
+G Q +VTGWG S + VL + IPV EC + S +
Sbjct: 112 SGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNMVS 171
Query: 184 DSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKY 241
++ LCAG D+C+GDSGGP++ W ++G+VSWG GCG GVY +V++Y
Sbjct: 172 ENMLCAGILGDRQDACEGDSGGPMVASF-HGTWFLVGLVSWGEGCGLLHNYGVYTKVSRY 230
Query: 242 LRWIYNT 248
L WI+
Sbjct: 231 LDWIHGH 237
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 264 bits (677), Expect = 1e-89
Identities = 82/250 (32%), Positives = 130/250 (52%), Gaps = 16/250 (6%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALV------LRR 67
G+ ++ PW+ L FCGG L+ W++TAAHC+ Q +D L
Sbjct: 4 GRPAQKGTTPWIAML-SHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLS 62
Query: 68 TSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVR 127
SD + LG++ + +E + + ++P++ +END+ALV+L + N+FV
Sbjct: 63 PSDFKIILGKHWRLRSDENEQH-LGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVM 121
Query: 128 PVCLPQAGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFS---QNIFD 184
P+CLP+ E + IV+GWG + + LME+ IP+ + C+K ++ + +
Sbjct: 122 PICLPEG-PQQEGAMVIVSGWGKQ-FLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTR 179
Query: 185 SNLCAGGYKGGTDSCQGDSGGPLL-LQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKY 241
+CAG +GG D+C GDSGGP++ L R QW ++G VSWG CGK GVY ++
Sbjct: 180 DMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHN 239
Query: 242 LRWIYNTAKV 251
WI V
Sbjct: 240 KDWIQRVTGV 249
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 269 bits (690), Expect = 2e-89
Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 19/265 (7%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKID 60
+I +G +E+ PW V L R+ ++ CG LI++RWVLTAAHC+
Sbjct: 156 ELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW 215
Query: 61 NALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSE-QNYENDIALVQLSKK 119
+ +DL+VR+G++ ++ + ++PR++ +N + DIAL++L K
Sbjct: 216 DKNF--TENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDIALMKLKKP 273
Query: 120 AQYNSFVRPVCLPQAGD----FYEDQIGIVTGWGTL------SYGGPRSDVLMEVPIPVW 169
++ ++ PVCLP G VTGWG L + G + VL V +P+
Sbjct: 274 VAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIV 333
Query: 170 RLTECRKQFSQNIFDSNLCAG---GYKGGTDSCQGDSGGPLLLQRP-DKQWTIIGVVSWG 225
C+ I D+ CAG D+C+GDSGGP +++ P + +W +G+VSWG
Sbjct: 334 ERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWG 393
Query: 226 IGCGK--TPGVYVQVNKYLRWIYNT 248
GC + G Y V + +WI
Sbjct: 394 EGCDRDGKYGFYTHVFRLKKWIQKV 418
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 262 bits (672), Expect = 4e-89
Identities = 75/238 (31%), Positives = 110/238 (46%), Gaps = 19/238 (7%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G E +WPW +L Q++ + CG LIN W+++AAHC + +
Sbjct: 4 GTEVEEGEWPWQASL--QWDGSHRCGATLINATWLVSAAHCFTTY-------KNPARWTA 54
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
G + + I V+ ++ +++ DI+L +LS Y + V VCLP
Sbjct: 55 SFGVTIKPSKMKRGLRRI-----IVHEKYKHPSHDYDISLAELSSPVPYTNAVHRVCLPD 109
Query: 134 AGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IFDSNLCAG 190
A F + VTG+G L G + L + + + T C + + N I LCAG
Sbjct: 110 ASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAG 169
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIY 246
+G TD+CQGDSGGPL+ W + G+VSWG C K PGVY +V WI
Sbjct: 170 SLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWIT 227
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 260 bits (668), Expect = 1e-88
Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 24/242 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G + ++P++V L CGG L + VLTAAHC+ +N + +
Sbjct: 4 GTRAAQGEFPFMVRL--SM----GCGGALYAQDIVLTAAHCVSGSGNN-------TSITA 50
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
G D + K + + + P F+++ Y D AL++L++ +P
Sbjct: 51 TGGVVDLQSSSAVK---VRSTKVLQAPGFTKETYGKDWALIKLAQPIN-----QPTLKIA 102
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAGGY 192
Y V GWG GG + L++ +P CR S + + +CAG
Sbjct: 103 TTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYD 162
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNTAK 250
D+CQGDSGGP+ + +W +G+VSWG GC + GVY +V+ + I + A+
Sbjct: 163 TKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAAR 222
Query: 251 VI 252
+
Sbjct: 223 TL 224
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 264 bits (677), Expect = 9e-88
Identities = 73/271 (26%), Positives = 117/271 (43%), Gaps = 30/271 (11%)
Query: 1 CG-RNGKQ-TAKIDKGQ-ASEVNDWPWLVALKRQYERDN------FCGGVLINERWVLTA 51
CG RN + KI +E ++PW+VA+ + CGG LI VLT
Sbjct: 118 CGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTG 177
Query: 52 AHCIKQKIDNALVLRRTSDLIVRLGEYDFSKVNET-KVTDIPAAAMKVYPRFSEQNYEND 110
AHC+ N + +R GE+D E + + ++ F+ + ND
Sbjct: 178 AHCVNSYQSNL------DAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVND 231
Query: 111 IALVQLSKKAQYNSFVRPVCLPQAGDFYEDQIGIVTGWGTLSYG--GPRSDVLMEVPIPV 168
+AL+ L + + +CLPQ ++ +GWG +G S++L ++ +P
Sbjct: 232 VALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPT 291
Query: 169 WRLTECRKQFSQ-------NIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRP--DKQWTII 219
+C+ + + +CA G + G D+C GD G PL P ++ +
Sbjct: 292 VDRDKCQADLRNTRLGLKFVLDQTFVCA-GGEQGKDTCTGDGGSPLFCPDPRNPSRYMQM 350
Query: 220 GVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
G+V+WGIGCG PGVY V + WI
Sbjct: 351 GIVAWGIGCGDENVPGVYANVAHFRNWIDQE 381
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 259 bits (663), Expect = 1e-87
Identities = 77/240 (32%), Positives = 117/240 (48%), Gaps = 14/240 (5%)
Query: 14 GQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
G S +WPW V+L+ + CGG LI +WVLTAAHC
Sbjct: 4 GTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGL-------PLQDVWR 56
Query: 73 VRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLP 132
+ G + S + + + ++ + +DIAL++L +Y F +P+ LP
Sbjct: 57 IYSGILELSDITKDTPF-SQIKEIIIHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLP 115
Query: 133 QAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAG 190
GD VTGWG G ++L +V IP+ EC+K++ I +CAG
Sbjct: 116 SKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAG 175
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
+GG D+C+GDSGGPL+ + + W ++G+ SWG GC + PGVY +V +Y+ WI
Sbjct: 176 YKEGGKDACKGDSGGPLVCKH-NGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEK 234
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 257 bits (660), Expect = 2e-87
Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 24/239 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDN---FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSD 70
G ++ + P++ L ++ CGG L+ E +VLTAAHC+ S
Sbjct: 4 GHEAKPHSRPYMAFL--LFKTSGKSHICGGFLVREDFVLTAAHCLG------------SS 49
Query: 71 LIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVC 130
+ V LG ++ + T+ IP +P ++++ NDI L++L++KA V P+
Sbjct: 50 INVTLGAHNIMERERTQQV-IPVRRPIPHPDYNDETLANDIMLLKLTRKADITDKVSPIN 108
Query: 131 LPQAG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCA 189
LP++ + + V GWG L P +D L EV + V +C +F I + +CA
Sbjct: 109 LPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNYIPFTQICA 168
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 248
G +S GDSGGPL+ G+VS+G G TP VY +++ +L WI++T
Sbjct: 169 GDPSKRKNSFSGDSGGPLVC-----NGVAQGIVSYGRNDGTTPDVYTRISSFLSWIHST 222
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 257 bits (660), Expect = 2e-87
Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 21/238 (8%)
Query: 14 GQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
G ++ + P++ L ++ CGG LI + +VLTAAHC S +
Sbjct: 4 GHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWG------------SSIN 51
Query: 73 VRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLP 132
V LG ++ + T+ IP +P ++ +N+ NDI L+QL +KA+ V+P+ LP
Sbjct: 52 VTLGAHNIKEQEPTQQF-IPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLP 110
Query: 133 QAG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSN-LCAG 190
Q V GWG + G S L EV + V +C + LC G
Sbjct: 111 SNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVG 170
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 248
+ S +GDSGGPL+ G+VS+G G P +V+ ++ WI T
Sbjct: 171 DPEIKKTSFKGDSGGPLVC-----NKVAQGIVSYGRNNGMPPRACTKVSSFVHWIKKT 223
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 256 bits (657), Expect = 1e-86
Identities = 71/245 (28%), Positives = 109/245 (44%), Gaps = 21/245 (8%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
GQ +++ ++PW V GG L+ +RW+LTAAH + K + + L V
Sbjct: 4 GQKAKMGNFPWQVFTNIH----GRGGGALLGDRWILTAAHTLYPKEHE---AQSNASLDV 56
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSE---QNYENDIALVQLSKKAQYNSFVRPVC 130
LG + K+ + P + V+P + + N+E DIAL++L + P+C
Sbjct: 57 FLGHTNVE--ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPIC 114
Query: 131 LPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-----IFD 184
LP + +G V+G+G + L V +PV C
Sbjct: 115 LPDNDTFYDLGLMGYVSGFGVMEEKIA--HDLRFVRLPVANPQACENWLRGKNRMDVFSQ 172
Query: 185 SNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQ-WTIIGVVSWGIGCGKTPGVYVQVNKYLR 243
+ CAG D+CQGDSGG ++ P+ W G+VSWGIGC + G Y +V Y+
Sbjct: 173 NMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGYGFYTKVLNYVD 232
Query: 244 WIYNT 248
WI
Sbjct: 233 WIKKE 237
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 258 bits (662), Expect = 3e-86
Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 24/261 (9%)
Query: 1 CGR---NGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQ 57
CG+ +Q +I GQ +++ ++PW V GG L+ +RW+LTAAH +
Sbjct: 77 CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIH----GRGGGALLGDRWILTAAHTLYP 132
Query: 58 KIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSE---QNYENDIALV 114
K + + L V LG + K+ + P + V+P + + N+E DIAL+
Sbjct: 133 KEHE---AQSNASLDVFLGHTNVE--ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALL 187
Query: 115 QLSKKAQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTE 173
+L + P+CLP + +G V+G+G + L V +PV
Sbjct: 188 ELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIA--HDLRFVRLPVANPQA 245
Query: 174 CRKQFSQN-----IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDK-QWTIIGVVSWGIG 227
C + CAG D+CQGDSGG ++ P+ +W G+VSWGIG
Sbjct: 246 CENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG 305
Query: 228 CGKTPGVYVQVNKYLRWIYNT 248
C + G Y +V Y+ WI
Sbjct: 306 CSRGYGFYTKVLNYVDWIKKE 326
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 255 bits (653), Expect = 4e-86
Identities = 76/240 (31%), Positives = 111/240 (46%), Gaps = 14/240 (5%)
Query: 14 GQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
G AS +WPW V L CGG +I +W+LTAAHC L
Sbjct: 4 GTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGV-------ESPKILR 56
Query: 73 VRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLP 132
V G + S++ E + ++ ++ DIAL++L Y RP+ LP
Sbjct: 57 VYSGILNQSEIKEDTSF-FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPISLP 115
Query: 133 QAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAG 190
G+ VTGWG + L + IP+ EC+K++ + I +CAG
Sbjct: 116 SKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAG 175
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
+GG D+C+GDSGGPL + + W ++G+ SWG GC + PGVY V +Y+ WI
Sbjct: 176 YREGGKDACKGDSGGPLSCKHNEV-WHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 234
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 253 bits (650), Expect = 7e-86
Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 21/237 (8%)
Query: 14 GQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
G+ S + P++ L+ Q CGG L+ E +VLTAAHC S++
Sbjct: 4 GRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWG------------SNIN 51
Query: 73 VRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLP 132
V LG ++ + T+ I A +P+++++ +NDI L+QLS++ + N V PV LP
Sbjct: 52 VTLGAHNIQRRENTQQH-ITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALP 110
Query: 133 QAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGG 191
+A + + V GWG +S +D L EV + V R +C + F +C G
Sbjct: 111 RAQEGLRPGTLCTVAGWGRVSMRRG-TDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGD 169
Query: 192 YKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 248
+ + +GDSGGPLL G+VS+G G P V+ +V+ +L WI T
Sbjct: 170 RRERKAAFKGDSGGPLLC-----NNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTT 221
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 253 bits (649), Expect = 1e-85
Identities = 62/237 (26%), Positives = 97/237 (40%), Gaps = 26/237 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + +P+L ++ Q + +FCGG LI+ R+V+TAA C + + V
Sbjct: 4 GRKARPRQFPFLASI--QNQGRHFCGGALIHARFVMTAASCFQS--------QNPGVSTV 53
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG YD + + + + Q ND+ L+QL ++A S V + LP
Sbjct: 54 VLGAYDLRRRERQSRQ-TFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPL 112
Query: 134 AG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGY 192
V GWG+ GG S V + V +CR +N+C G
Sbjct: 113 QNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR--------PNNVCTGVL 164
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CGKTPGVYVQVNKYLRWIYNT 248
C GD G PL+ + GV S+ +G CG+ P + +V + WI
Sbjct: 165 TRRGGICNGDGGTPLVC-----EGLAHGVASFSLGPCGRGPDFFTRVALFRDWIDGV 216
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 254 bits (650), Expect = 1e-85
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 28/249 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
GQ ++ D+PW V + G L+ + WVLTAAH + ++ +A S L +
Sbjct: 4 GQKAKPGDFPWQVLILGGT----TAAGALLYDNWVLTAAHAVYEQKHDA------SALDI 53
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQ-NYENDIALVQLSKKAQYNSFVRPVCLP 132
R+G + T+ + A+ ++ ++ ++NDIAL++L+ K NS + P+CLP
Sbjct: 54 RMGTLKRLSPHYTQA---WSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLP 110
Query: 133 QAGD---FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQ------NIF 183
+ D IG +GWG G + LM V IP+ +C + + ++
Sbjct: 111 RKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVT 169
Query: 184 DSNLCAGGYKGGTDSCQGDSGGPLLLQ-RPDKQWTIIGVVSWG-IGCGK--TPGVYVQVN 239
+ LCAG GG DSC+GDSGG L+ ++W + G+VSWG + CG+ GVY +V
Sbjct: 170 ANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVI 229
Query: 240 KYLRWIYNT 248
Y+ WI N
Sbjct: 230 NYIPWIENI 238
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 254 bits (650), Expect = 1e-85
Identities = 77/243 (31%), Positives = 108/243 (44%), Gaps = 23/243 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + P++ ++ QY + CGGVLI+ +WVLTAAHC + + V
Sbjct: 6 GKEVSPHSRPFMASI--QYGGHHVCGGVLIDPQWVLTAAHCQYRF-------TKGQSPTV 56
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG + SK +K T + + R + NDI LV+L A+ N V+ + +
Sbjct: 57 VLGAHSLSKNEASKQT-LEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRS 115
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQN----IFDSNLC 188
VTGWG R SD L EV + V C Q N I +C
Sbjct: 116 KTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVC 175
Query: 189 AGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQV-NKYLRWI 245
AG KG DSC+GD+GGPL+ + +VS G CG PG+Y + KY WI
Sbjct: 176 AGDAKGQKDSCKGDAGGPLIC-----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWI 230
Query: 246 YNT 248
+
Sbjct: 231 KSN 233
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 253 bits (649), Expect = 1e-85
Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 22/239 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDN--FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDL 71
G + P++ + FCGG L+ +++VLTAAHC +
Sbjct: 4 GNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKG------------RSM 51
Query: 72 IVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCL 131
V LG ++ ET+ IP A +P ++ + NDI L++L + A+ VRP+ L
Sbjct: 52 TVTLGAHNIKAKEETQQI-IPVAKAIPHPDYNPDDRSNDIMLLKLVRNAKRTRAVRPLNL 110
Query: 132 PQAG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSN-LCA 189
P+ V GWG ++ G L EV + V + C QF + +N +C
Sbjct: 111 PRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICV 170
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 248
G K S + DSGGPL+ + G+VS+G G P V+ +V ++ WI T
Sbjct: 171 GDSKIKGASFEEDSGGPLVC-----KRAAAGIVSYGQTDGSAPQVFTRVLSFVSWIKKT 224
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 257 bits (658), Expect = 9e-85
Identities = 75/261 (28%), Positives = 117/261 (44%), Gaps = 24/261 (9%)
Query: 1 CGR---NGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQ 57
CG+ +Q +I GQ +++ ++PW V GG L+ +RW+LTAAH +
Sbjct: 145 CGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIH----GRGGGALLGDRWILTAAHTLYP 200
Query: 58 KIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSE---QNYENDIALV 114
K + + L V LG + K+ + P + V+P + + N+E DIAL+
Sbjct: 201 KEHE---AQSNASLDVFLGHTNVE--ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALL 255
Query: 115 QLSKKAQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTE 173
+L + P+CLP + +G V+G+G + L V +PV
Sbjct: 256 ELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIA--HDLRFVRLPVANPQA 313
Query: 174 CRKQFSQN-----IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDK-QWTIIGVVSWGIG 227
C + CAG D+CQGDSGG ++ P+ +W G+VSWGIG
Sbjct: 314 CENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIG 373
Query: 228 CGKTPGVYVQVNKYLRWIYNT 248
C + G Y +V Y+ WI
Sbjct: 374 CSRGYGFYTKVLNYVDWIKKE 394
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 251 bits (643), Expect = 9e-85
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 21/238 (8%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + V +P+ V+L + + CG +++ VLTAAHC+ + + L V
Sbjct: 4 GKDAPVGKYPYQVSL--RLSGSHRCGASILDNNNVLTAAHCVDGLSN-------LNRLKV 54
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
+G S+ + V + + ND+ALV L+ ++N V+P+ L
Sbjct: 55 HVGTNYLSESGDV----YDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLST 110
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGYK 193
+ E +TGWG+ GG + L E+ + V +C + + + DS++C K
Sbjct: 111 NDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR-VIDSHICT-LTK 168
Query: 194 GGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK-TPGVYVQVNKYLRWIYNTAK 250
G +C GDSGGPL+ IG+VS+G C P VY +V+ ++ WI K
Sbjct: 169 RGEGACHGDSGGPLVA-----NGAQIGIVSFGSPCALGEPDVYTRVSSFVSWINANLK 221
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 251 bits (643), Expect = 9e-85
Identities = 73/238 (30%), Positives = 114/238 (47%), Gaps = 21/238 (8%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G + + PW L E + FCGG +++E ++LTAAHC+ + V
Sbjct: 4 GYNCKDGEVPWQALL-INEENEGFCGGTILSEFYILTAAHCL----------YQAKRFKV 52
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
R+G+ + + + + + RF+++ Y+ DIA+++L + V P LP
Sbjct: 53 RVGDRNTEQEEGGEAV-HEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPT 111
Query: 134 AGDFYEDQIGIVTGWGTLSYGG-PRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGY 192
A +++GWG + G D L + PV +C + I + C G
Sbjct: 112 A-PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFL 170
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNT 248
+GG DSCQGDSGGP++ + GVVSWG GC + PGVY +V Y++WI NT
Sbjct: 171 EGGKDSCQGDSGGPVVC-----NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNT 223
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 251 bits (643), Expect = 1e-84
Identities = 62/238 (26%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDN--FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDL 71
G + + P++ L+ FCGG LI +VLTAAHC +
Sbjct: 4 GTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAG------------RSI 51
Query: 72 IVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCL 131
V LG ++ ++ +T + +P+++ +DI L++L +KA V +
Sbjct: 52 TVTLGAHNITEEEDTWQK-LEVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPF 110
Query: 132 PQAG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAG 190
P ++ V GWG P SD L EV + + C F + LC G
Sbjct: 111 PSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQAC-SHFRDFDHNLQLCVG 169
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 248
+ + +GDSGGPLL G+VS+G K P V+ +++ Y WI
Sbjct: 170 NPRKTKSAFKGDSGGPLLC-----AGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQI 222
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 250 bits (642), Expect = 1e-84
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 23/242 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
G+ +++ PW VA++ ++ CGG ++++ +VLTAAHC+ ++ ++
Sbjct: 3 GEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFD--------QKPETIV 54
Query: 73 VRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSF-VRPVCL 131
++ + + P + + ++ ENDIA+++LS+ + + +P L
Sbjct: 55 IQYESTNLWEDPGKSD---PYVSHVYLSFYRQETMENDIAILELSRPLKLDGLKSKPAKL 111
Query: 132 PQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCA 189
P +V+G+G P+ L + V L ECR ++ + CA
Sbjct: 112 PDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCA 171
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK-TPGVYVQVNKYLRWIYNT 248
K G GD+G P + Q T++GV ++ + P V+ +V Y+ WI +
Sbjct: 172 Q--KVGVSLESGDAGDPTVQ-----QDTLVGVAAYFPKRPEGAPEVFTKVGSYVSWIQDI 224
Query: 249 AK 250
K
Sbjct: 225 IK 226
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 251 bits (644), Expect = 1e-84
Identities = 84/265 (31%), Positives = 127/265 (47%), Gaps = 28/265 (10%)
Query: 1 CGR---NGKQTAKIDKGQASEVNDWPWLVALKRQYERDN----FCGGVLINERWVLTAAH 53
CG +A++ G+ + + WPW ++L QY RDN CGG LI VLTAAH
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISL--QYLRDNTWRHTCGGTLITPNHVLTAAH 58
Query: 54 CIKQKIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIAL 113
CI T V LG+ + +E + + V+ +++ NDIAL
Sbjct: 59 CI----------SNTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIAL 108
Query: 114 VQLSKKAQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLT 172
++L++ + ++ CLP G +D VTGWG L GP + L + PV
Sbjct: 109 IKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYA 168
Query: 173 ECRKQFSQN--IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG--C 228
C ++ + ++ +CA G G +C GDSGGPL Q D QW + G+VS+G G C
Sbjct: 169 TCSQRDWWGTTVKETMVCA-GGDGVISACNGDSGGPLNCQA-DGQWDVRGIVSFGSGLSC 226
Query: 229 G--KTPGVYVQVNKYLRWIYNTAKV 251
K P V+ +V+ Y+ WI ++
Sbjct: 227 NTFKKPTVFTRVSAYIDWINQKLQL 251
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 250 bits (641), Expect = 2e-84
Identities = 64/238 (26%), Positives = 98/238 (41%), Gaps = 22/238 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDN--FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDL 71
G S + P++ L E+ CGG LI+ ++VLTAAHC ++
Sbjct: 4 GVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKG------------REI 51
Query: 72 IVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCL 131
V LG +D K T+ I ++ ++ +DI L++L KK + V V L
Sbjct: 52 TVILGAHDVRKRESTQQK-IKVEKQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPL 110
Query: 132 PQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAG 190
P D + + GWG P S L EV + + C + + +C G
Sbjct: 111 PSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKAC-VDYRYYEYKFQVCVG 169
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 248
+ GDSGGPLL G+VS+G K P ++ +V+ Y+ WI
Sbjct: 170 SPTTLRAAFMGDSGGPLLC-----AGVAHGIVSYGHPDAKPPAIFTRVSTYVPWINAV 222
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 255 bits (653), Expect = 2e-84
Identities = 85/262 (32%), Positives = 126/262 (48%), Gaps = 25/262 (9%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKID 60
CGR +I G+ + + WPW V+L +Y+ + CGG L++ WVLTAAHC ++
Sbjct: 108 CGRRKLPVDRIVGGRDTSLGRWPWQVSL--RYDGAHLCGGSLLSGDWVLTAAHCFPERNR 165
Query: 61 NALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRF------SEQNYENDIALV 114
S V G + + ++ A+ + + + + NDIALV
Sbjct: 166 VL------SRWRVFAGAVAQASPHGLQL---GVQAVVYHGGYLPFRDPNSEENSNDIALV 216
Query: 115 QLSKKAQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTE 173
LS +++PVCLP AG + +I VTGWG Y G ++ VL E +P+
Sbjct: 217 HLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDV 276
Query: 174 CRKQFSQN--IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRP---DKQWTIIGVVSWGIGC 228
C I CAG +GG D+CQGDSGGP + + +W + G+VSWG GC
Sbjct: 277 CNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGC 336
Query: 229 GK--TPGVYVQVNKYLRWIYNT 248
PGVY +V+ + WI+
Sbjct: 337 ALAQKPGVYTKVSDFREWIFQA 358
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 262 bits (672), Expect = 2e-84
Identities = 78/240 (32%), Positives = 113/240 (47%), Gaps = 14/240 (5%)
Query: 14 GQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
G AS +WPW V L CGG +I +W+LTAAHC L
Sbjct: 391 GTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGV-------ESPKILR 443
Query: 73 VRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLP 132
V G + S++ E + ++ ++ DIAL++L Y RP+CLP
Sbjct: 444 VYSGILNQSEIKEDTSF-FGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLP 502
Query: 133 QAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAG 190
GD VTGWG + L + IP+ EC+K++ + I +CAG
Sbjct: 503 SKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAG 562
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
+GG D+C+GDSGGPL + ++ W ++G+ SWG GC + PGVY V +Y+ WI
Sbjct: 563 YREGGKDACKGDSGGPLSCKH-NEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEK 621
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 251 bits (642), Expect = 3e-84
Identities = 83/255 (32%), Positives = 125/255 (49%), Gaps = 29/255 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDN----FCGGVLINERWVLTAAHCIKQKIDNALVLRRTS 69
G +++ PW A+ ++ R CGG+LI+ W+L+AAHC +++
Sbjct: 4 GLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFP-------PH 56
Query: 70 DLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKK----AQYNSF 125
L V LG E + V+ F + Y+NDIAL+QL AQ +S
Sbjct: 57 HLTVILGRTYRVVPGEEEQK-FEVEKYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSV 115
Query: 126 VRPVCLPQAG-DFYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQN-- 181
VR VCLP A + ++G+G P S+ L E + ++ + C Q N
Sbjct: 116 VRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRT 175
Query: 182 IFDSNLCAGGYKGGT------DSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPG 233
+ D+ LCAG + G D+CQGDSGGPL+ + T++G++SWG+GCG+ PG
Sbjct: 176 VTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGR-MTLVGIISWGLGCGQKDVPG 234
Query: 234 VYVQVNKYLRWIYNT 248
VY +V YL WI +
Sbjct: 235 VYTKVTNYLDWIRDN 249
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 253 bits (648), Expect = 4e-84
Identities = 73/272 (26%), Positives = 119/272 (43%), Gaps = 42/272 (15%)
Query: 1 CGR---NGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQ 57
CG ++ +I G +++ ++PW V + GG LINE WVLTAAH +
Sbjct: 70 CGVPREPFEEKQRIIGGSDADIKNFPWQVFFDNP-----WAGGALINEYWVLTAAHVV-- 122
Query: 58 KIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFS-------EQNYEND 110
+ + +G K + + ++P + N++ND
Sbjct: 123 --------EGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDND 174
Query: 111 IALVQLSKKAQYNSFVRPVCLPQAGD---FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIP 167
IALV+L + V P+CLP + +G+++GWG + L +P
Sbjct: 175 IALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDR-AVRLKAARLP 233
Query: 168 VWRLTECRKQFSQN---------IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQ--W 216
V L +C++ + + +CA G + G DSC+GDSGG +Q P+ + +
Sbjct: 234 VAPLRKCKEVKVEKPTADAEAYVFTPNMICA-GGEKGMDSCKGDSGGAFAVQDPNDKTKF 292
Query: 217 TIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNT 248
G+VSWG CG G+Y +V Y+ WI T
Sbjct: 293 YAAGLVSWGPQCGT-YGLYTRVKNYVDWIMKT 323
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 249 bits (638), Expect = 4e-84
Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 24/237 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G + P V+L Y +FCGG L+NE WV++AAHC K S + V
Sbjct: 4 GYECKAYSQPHQVSLNSGY---HFCGGSLVNENWVVSAAHCYK------------SRVEV 48
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
RLGE++ ++ I ++ + +P +S N +NDI L++LSK A N++V+PV LP
Sbjct: 49 RLGEHNIKVTEGSEQF-ISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPT 107
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGYK 193
+ + V+GWG S+ L + IP+ ++C + I ++ CAG +
Sbjct: 108 S-CAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLE 166
Query: 194 GGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNT 248
GG DSCQGDSGGP++ + GVVSWG GC + PGVY +V + W+ +T
Sbjct: 167 GGKDSCQGDSGGPVVC-----NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTST 218
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 249 bits (637), Expect = 8e-84
Identities = 70/239 (29%), Positives = 102/239 (42%), Gaps = 23/239 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G +N+ P+LVAL C G LIN WVLTAAHC + ++ +
Sbjct: 4 GDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDR------------RNIRI 51
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
+LG + + NE + +P + DI L++L + Y++ + PV LP
Sbjct: 52 KLGMHSKNIRNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPS 111
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAGGY 192
+ GWG +S DV I + + C + LCAG
Sbjct: 112 R-SRGVGSRCRIMGWGKIS-TTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGIL 169
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGI-GCGKT--PGVYVQVNKYLRWIYNT 248
KGG D+C GDSGGPL+ + G+V+ G CG+ P VY +V Y WI +
Sbjct: 170 KGGRDTCHGDSGGPLIC-----NGEMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSI 223
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 250 bits (640), Expect = 1e-83
Identities = 72/264 (27%), Positives = 121/264 (45%), Gaps = 25/264 (9%)
Query: 1 CG-RNGKQTAKIDKGQASEVNDWPWLVALKRQYERDN---FCGGVLINERWVLTAAHCIK 56
CG + + KI G+ + + + PW A+ R++ + CGG L++ WV++A HC
Sbjct: 13 CGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFI 72
Query: 57 QKIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQ--NYENDIALV 114
D IV LG + + ++ + ++ +S + NDIAL+
Sbjct: 73 DYPK-------KEDYIVYLGRSRLNSNTQGEMK-FEVENLILHKDYSADTLAHHNDIALL 124
Query: 115 QLSKK----AQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPV 168
++ K AQ + ++ +CLP + +TG+G + + L + +
Sbjct: 125 KIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKL 184
Query: 169 WRLTECRKQFSQN--IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGI 226
EC++ + LCA + TDSCQGDSGGPL+ + T+ G+VSWG
Sbjct: 185 ISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL-QGRMTLTGIVSWGR 243
Query: 227 GCGK--TPGVYVQVNKYLRWIYNT 248
GC PGVY +V+ +L WI +
Sbjct: 244 GCALKDKPGVYTRVSHFLPWIRSH 267
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 249 bits (637), Expect = 1e-83
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 26/250 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
G + ++PW ++ +RQ + CG L++ L+A+HC+ +++
Sbjct: 4 GTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGV--------LPNNIR 55
Query: 73 VRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQ--NYENDIALVQLSKKAQYNSFVRPVC 130
V G + S + T+ + ++ + +Y NDIA++ L+ ++
Sbjct: 56 VIAGLWQQSDTSGTQT--ANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAV 113
Query: 131 LPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFS----QNIFDS 185
LP + Y +++GWG D+L + IPV +C NI+D+
Sbjct: 114 LPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDN 173
Query: 186 NLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSW----GIGCG--KTPGVYVQVN 239
++C G T +C GDSGGPL D ++GV SW G+G P VY +V+
Sbjct: 174 HICVQDPAGNTGACNGDSGGPLNCP--DGGTRVVGVTSWVVSSGLGACLPDYPSVYTRVS 231
Query: 240 KYLRWIYNTA 249
YL WI + +
Sbjct: 232 AYLGWIGDNS 241
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 248 bits (635), Expect = 1e-83
Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 26/239 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G +N+ +L + Y + CGG LIN+ WVLTA HC + ++ +
Sbjct: 4 GDECNINEHRFLALV---YANGSLCGGTLINQEWVLTARHCDR------------GNMRI 48
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG ++ +N+ + P ++ ++ DI L++L++ + ++ + P+ LP
Sbjct: 49 YLGMHNLKVLNKDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLP- 107
Query: 134 AGDFYEDQIGIVTGWG-TLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGY 192
+ + + GWG S DV I + C+ + + + + LCAG
Sbjct: 108 SNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAY-KGLAATTLCAGIL 166
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGI-GCG--KTPGVYVQVNKYLRWIYNT 248
+GG D+C+GDSGGPL+ G++S G C + PG+Y +V Y WI +
Sbjct: 167 EGGKDTCKGDSGGPLIC-----NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSI 220
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 248 bits (635), Expect = 2e-83
Identities = 72/242 (29%), Positives = 105/242 (43%), Gaps = 25/242 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G +N+ +LVAL R FCGG LIN+ WVLTAAHC + + +
Sbjct: 4 GDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDR------------KNFRI 51
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
+LG + NE + T +P + ++ DI L++L + + + P LP
Sbjct: 52 KLGMHSKKVPNEDEQTRVPKEKFFCLSSKNYTLWDKDIMLIRLDSPVKNSKHIAPFSLPS 111
Query: 134 AGDFYEDQIGIVTGWG-TLSYGGPRSDVLMEVPIPVWRLTECRKQFSQ---NIFDSNLCA 189
+ + + GWG G DV V I + CR + + LCA
Sbjct: 112 S-PPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCA 170
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CGKT--PGVYVQVNKYLRWIY 246
G +GG D+C+GDSGGPL+ G+ SWG C + P Y +V +L WI
Sbjct: 171 GILEGGKDTCKGDSGGPLIC-----NGQFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIE 225
Query: 247 NT 248
N
Sbjct: 226 NI 227
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 253 bits (647), Expect = 3e-83
Identities = 83/263 (31%), Positives = 134/263 (50%), Gaps = 29/263 (11%)
Query: 1 CGRNGKQT-AKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKI 59
CG + + T +I GQ ++ D+PW V + G L+ + WVLTAAH + ++
Sbjct: 151 CGLSARTTGGQIYGGQKAKPGDFPWQVLILGGT----TAAGALLYDNWVLTAAHAVYEQK 206
Query: 60 DNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFS-EQNYENDIALVQLSK 118
+A S L +R+G + T+ + A+ ++ ++ + ++NDIAL++L+
Sbjct: 207 HDA------SALDIRMGTLKRLSPHYTQA---WSEAVFIHEGYTHDAGFDNDIALIKLNN 257
Query: 119 KAQYNSFVRPVCLPQAGD---FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECR 175
K NS + P+CLP+ D IG +GWG G + LM V IP+ +C
Sbjct: 258 KVVINSNITPICLPRKEAESFMRTDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCT 316
Query: 176 KQFSQ------NIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRP-DKQWTIIGVVSWG-IG 227
+ + ++ + LCAG GG DSC+GDSGG L+ ++W + G+VSWG +
Sbjct: 317 AAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMN 376
Query: 228 CGK--TPGVYVQVNKYLRWIYNT 248
CG+ GVY +V Y+ WI N
Sbjct: 377 CGEAGQYGVYTKVINYIPWIENI 399
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 246 bits (631), Expect = 5e-83
Identities = 72/241 (29%), Positives = 115/241 (47%), Gaps = 24/241 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ +E + P++ ++ Q + CGGVL+ E+WVL+AAHC++ + V
Sbjct: 4 GREAEAHARPYMASV--QLNGAHLCGGVLVAEQWVLSAAHCLED--------AADGKVQV 53
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG + S+ +K +P ++D+ L+QLS+KA VRP+ +
Sbjct: 54 LLGAHSLSQPEPSKRL-YDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQR 112
Query: 134 AG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IFDSNLCAG 190
D + V GWG +++ G R D L V +PV C ++ + I + +CA
Sbjct: 113 VDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE 172
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIYN 247
DSC+GD+GGPL+ + GVV+ G CG K PG+Y +V Y WI +
Sbjct: 173 S--NRRDSCKGDAGGPLVC-----GGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225
Query: 248 T 248
Sbjct: 226 V 226
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 248 bits (635), Expect = 7e-83
Identities = 83/263 (31%), Positives = 124/263 (47%), Gaps = 27/263 (10%)
Query: 1 CGR----NGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIK 56
CGR +I G +S PWL A+ Y D+FC G L++ WV++AAHC
Sbjct: 22 CGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI---YIGDSFCAGSLVHTCWVVSAAHCFS 78
Query: 57 QKIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQN-YENDIALVQ 115
+ V LG++ F++ + T Y +S N ++D+ L++
Sbjct: 79 HSPP-------RDSVSVVLGQHFFNRTTDVTQT-FGIEKYIPYTLYSVFNPSDHDLVLIR 130
Query: 116 LSKK----AQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVW 169
L KK A + FV+P+CLP+ G F + GWG L S L E +P+
Sbjct: 131 LKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLV 190
Query: 170 RLTECRKQFSQN--IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG 227
+C I + LCAG + +D+CQGDSGGPL ++ + G++SWG G
Sbjct: 191 ADHKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGV-AYLYGIISWGDG 249
Query: 228 CGK--TPGVYVQVNKYLRWIYNT 248
CG+ PGVY +V Y+ WI +
Sbjct: 250 CGRLHKPGVYTRVANYVDWINDR 272
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 247 bits (633), Expect = 2e-82
Identities = 82/252 (32%), Positives = 121/252 (48%), Gaps = 25/252 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDN----FCGGVLINERWVLTAAHCIKQKIDNALVLRRTS 69
GQ + WPW+V+L+ +N CGG L+N +W+LTAAHC + K ++ +
Sbjct: 4 GQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIK-------KKVT 56
Query: 70 DLIVRLGEYDFSKVNETKVTDIPAAAMKV-----YPRFSEQNYENDIALVQLSKKAQYNS 124
D + G + V P V + ++S + NDIAL++++
Sbjct: 57 DWRLIFGAKEVEWGTNKPV-KPPLQERYVEKIIIHEKYSASSEANDIALMKITPPVTCGH 115
Query: 125 FVRPVCLPQAGD--FYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQN 181
F+ P CLPQ Q V GWG L R S +L E + + L C N
Sbjct: 116 FIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYN 175
Query: 182 --IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRP-DKQWTIIGVVSWGIGCG--KTPGVYV 236
I +N+CAG +G D+CQGDSGGPL+ + + + ++G+ SWG+GC K PGVY
Sbjct: 176 GRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYT 235
Query: 237 QVNKYLRWIYNT 248
YL WI +
Sbjct: 236 STWSYLNWIASK 247
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 245 bits (629), Expect = 2e-82
Identities = 87/257 (33%), Positives = 126/257 (49%), Gaps = 25/257 (9%)
Query: 1 CGR-----NGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCI 55
CG ++I G+ + WPW V+L + +FCGG LINE WV+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSL-QDKTGFHFCGGSLINENWVVTAAHCG 59
Query: 56 KQKIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQ 115
T+ +V GE+D +E + A + +++ NDI L++
Sbjct: 60 -----------VTTSDVVVAGEFDQGSSSEKIQK-LKIAKVFKNSKYNSLTINNDITLLK 107
Query: 116 LSKKAQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSY-GGPRSDVLMEVPIPVWRLTE 173
LS A ++ V VCLP A D F + TGWG Y D L + +P+ T
Sbjct: 108 LSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTN 167
Query: 174 CRKQFSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KT 231
C+K + I D+ +CAG G SC GDSGGPL+ ++ + WT++G+VSWG T
Sbjct: 168 CKKYWGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKK-NGAWTLVGIVSWGSSTCSTST 224
Query: 232 PGVYVQVNKYLRWIYNT 248
PGVY +V + W+ T
Sbjct: 225 PGVYARVTALVNWVQQT 241
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 244 bits (625), Expect = 4e-82
Identities = 62/239 (25%), Positives = 99/239 (41%), Gaps = 30/239 (12%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + + WP++V+L Q +FCG LI +V++AAHC+ + V
Sbjct: 4 GRRARPHAWPFMVSL--QLRGGHFCGATLIAPNFVMSAAHCVAN--------VNVRAVRV 53
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG ++ S+ T+ + + N NDI ++QL+ A N+ V+ LP
Sbjct: 54 VLGAHNLSRREPTRQV-FAVQRI-FENGYDPVNLLNDIVILQLNGSATINANVQVAQLPA 111
Query: 134 AGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGY 192
G + GWG L + VL E+ + V + CR SN+C
Sbjct: 112 QGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCR--------RSNVCTLVR 162
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWG-IGCG--KTPGVYVQVNKYLRWIYNT 248
C GDSG PL+ I G+ S+ GC P + V +++ WI +
Sbjct: 163 GRQAGVCFGDSGSPLVC-----NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSI 216
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 245 bits (627), Expect = 4e-82
Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 24/250 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDN---FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSD 70
G+ + + + PW A+ R++ + CGG LI+ WV++A HC D
Sbjct: 4 GEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPK-------KED 56
Query: 71 LIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQN--YENDIALVQLSKK----AQYNS 124
IV LG + + ++ + ++ +S + NDIAL+++ K AQ +
Sbjct: 57 YIVYLGRSRLNSNTQGEMK-FEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSR 115
Query: 125 FVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQN- 181
++ + LP + +TG+G + + L + + EC++
Sbjct: 116 TIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS 175
Query: 182 -IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQV 238
+ LCA + TDSCQGDSGGPL+ + T+ G+VSWG GC PGVY +V
Sbjct: 176 EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGR-MTLTGIVSWGRGCALKDKPGVYTRV 234
Query: 239 NKYLRWIYNT 248
+ +L WI +
Sbjct: 235 SHFLPWIRSH 244
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 245 bits (627), Expect = 5e-82
Identities = 77/246 (31%), Positives = 117/246 (47%), Gaps = 23/246 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G +S PWL A+ +FC G L++ WV++AAHC + V
Sbjct: 4 GSSSLPGSHPWLAAIYIGD---SFCAGSLVHTCWVVSAAHCFSHSPP-------RDSVSV 53
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQN-YENDIALVQLSKK----AQYNSFVRP 128
LG++ F++ + T Y +S N ++D+ L++L KK A + FV+P
Sbjct: 54 VLGQHFFNRTTDVTQT-FGIEKYIPYTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQP 112
Query: 129 VCLPQAGD-FYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQN--IFD 184
+CLP+ G F + GWG L S L E +P+ +C I
Sbjct: 113 ICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISP 172
Query: 185 SNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYL 242
+ LCAG + +D+CQGDSGGPL ++ + G++SWG GCG+ PGVY +V Y+
Sbjct: 173 NMLCAGYFDCKSDACQGDSGGPLACEKNGV-AYLYGIISWGDGCGRLHKPGVYTRVANYV 231
Query: 243 RWIYNT 248
WI +
Sbjct: 232 DWINDR 237
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 243 bits (624), Expect = 6e-82
Identities = 69/238 (28%), Positives = 105/238 (44%), Gaps = 24/238 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + PW AL E + FC GVL++ +WVL+AAHC + + +
Sbjct: 4 GEDCSPHSQPWQAAL--VMENELFCSGVLVHPQWVLSAAHCFQ------------NSYTI 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG + E + A+ +P ++ ND+ L++L + + +R + +
Sbjct: 50 GLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIAS 109
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGYK 193
+V+GWG L+ G VL V + V C K + S CAGG +
Sbjct: 110 Q-CPTAGNSCLVSGWGLLA-NGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQ 167
Query: 194 GGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIYNT 248
DSC GDSGGPL+ + G+VS+G CG PGVY + K+ WI T
Sbjct: 168 DQKDSCNGDSGGPLIC-----NGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 220
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 245 bits (627), Expect = 6e-82
Identities = 75/248 (30%), Positives = 119/248 (47%), Gaps = 24/248 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G ++ WPW V++ YE + CGG L++E+WVL+AAHC + V
Sbjct: 4 GSSAVAGQWPWQVSI--TYEGVHVCGGSLVSEQWVLSAAHCFPSEHH-------KEAYEV 54
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
+LG + +E + +P + ++ + DIAL+QLS+ ++ ++RP+ LP
Sbjct: 55 KLGAHQLDSYSEDAKV-STLKDIIPHPSYLQEGSQGDIALLQLSRPITFSRYIRPISLPA 113
Query: 134 AGD-FYEDQIGIVTGWGTLSYGG--PRSDVLMEVPIPVWRLTECRKQFSQN--------I 182
A F VTGWG ++ L ++ +P+ C ++ + +
Sbjct: 114 AQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFV 173
Query: 183 FDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNK 240
+ +CAG +GG D+CQGDSGGPL W + G+VSWG CG PGVY +
Sbjct: 174 QEDMVCAGYVEGGKDACQGDSGGPLSCPVEGL-WYLTGIVSWGDACGARNRPGVYTLASS 232
Query: 241 YLRWIYNT 248
Y WI +
Sbjct: 233 YASWIQSK 240
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 243 bits (624), Expect = 7e-82
Identities = 75/241 (31%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G ++ D+P++V++ +CGG L+N VLTAAHC+ S +
Sbjct: 4 GTSASAGDFPFIVSI--SRNGGPWCGGSLLNANTVLTAAHCVSG--------YAQSGFQI 53
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
R G +T ++++V+P +S ND+A+++LS + L
Sbjct: 54 RAGSLS---RTSGGIT-SSLSSVRVHPSYS--GNNNDLAILKLSTSIPSGGNIGYARLAA 107
Query: 134 AG-DFYEDQIGIVTGWGTLSYGGPRS-DVLMEVPIPVWRLTECRKQFSQN-IFDSNLCAG 190
+G D V GWG S GG + L++V +P+ CR Q+ + I + CAG
Sbjct: 108 SGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAG 167
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYNT 248
GG DSCQGDSGGP++ T+IG VSWG GC + GVY V +I
Sbjct: 168 VSSGGKDSCQGDSGGPIVDSS----NTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223
Query: 249 A 249
A
Sbjct: 224 A 224
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 244 bits (624), Expect = 8e-82
Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 29/244 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ S++ PW V + + FCGG ++ +V+TAA C+ + SD+ +
Sbjct: 4 GKKSDITKEPWAVGV--LVDEKPFCGGSILTANFVITAAQCVDG--------TKPSDISI 53
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNS-FVRPVCLP 132
G + + + R+ +N+ A+++ + + + + LP
Sbjct: 54 HYGSSYRTTKGTSVMAKK-----IYIVRYHPLTMQNNYAVIETEMPIKLDDKTTKKIELP 108
Query: 133 QAG-DFYEDQIGIVTGWGTLSYGG-PRSDVLMEVPIPVWRLTECRKQFSQ-----NIFDS 185
D D +V+GWG+ ++ S LME V C +Q+ Q I+D
Sbjct: 109 SLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDG 168
Query: 186 NLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK-TPGVYVQVNKYLRW 244
CAGG T GD+G P + + T++GV S+ P V+++V Y+
Sbjct: 169 VFCAGGEYDETYIGYGDAGDPAV-----QNGTLVGVASYISSMPSEFPSVFLRVGYYVLD 223
Query: 245 IYNT 248
I +
Sbjct: 224 IKDI 227
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 243 bits (622), Expect = 1e-81
Identities = 83/238 (34%), Positives = 118/238 (49%), Gaps = 25/238 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G N P+ V+L Y +FCGG LIN +WV++AAHC K S + V
Sbjct: 4 GYTCGANTVPYQVSLNSGY---HFCGGSLINSQWVVSAAHCYK------------SGIQV 48
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
RLGE + + V + I A+ V+P ++ NDI L++L A NS V + LP
Sbjct: 49 RLGEDNINVVEGNEQF-ISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPT 107
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGY 192
+ +++GWG G DVL + P+ + C+ + I + CAG
Sbjct: 108 S-CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYL 166
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNT 248
+GG DSCQGDSGGP++ + G+VSWG GC + PGVY +V Y+ WI T
Sbjct: 167 EGGKDSCQGDSGGPVVC-----SGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQT 219
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 242 bits (621), Expect = 2e-81
Identities = 77/241 (31%), Positives = 113/241 (46%), Gaps = 28/241 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDN--FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDL 71
G +++ PW AL R N +CG VL++ +W+LTAAHC K
Sbjct: 4 GSDCDMHTQPWQAAL---LLRPNQLYCGAVLVHPQWLLTAAHCRK------------KVF 48
Query: 72 IVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCL 131
VRLG Y S V E+ +P +S + ND+ L++L+++ + VRP+ +
Sbjct: 49 RVRLGHYSLSPVYESGQQMFQGVKSIPHPGYSHPGHSNDLMLIKLNRRIRPTKDVRPINV 108
Query: 132 PQAGDFYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAG 190
+V+GWGT VL + I V C + + I D+ CA
Sbjct: 109 SSH-CPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQIDDTMFCA- 166
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWG-IGCGKT--PGVYVQVNKYLRWIYN 247
G K G DSCQGDSGGP++ ++ G+VSWG C + PGVY + K+ +WI
Sbjct: 167 GDKAGRDSCQGDSGGPVVC-----NGSLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQE 221
Query: 248 T 248
T
Sbjct: 222 T 222
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 242 bits (619), Expect = 4e-81
Identities = 70/239 (29%), Positives = 103/239 (43%), Gaps = 25/239 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G + N WP AL + FCGG LI+ W+LTAAHC+ + V
Sbjct: 4 GVEAVPNSWPHQAAL--FIDDMYFCGGSLISPEWILTAAHCMD----------GAGFVDV 51
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG ++ + T+VT I + V+ ++ NDIA+++L + + V LP
Sbjct: 52 VLGAHNIREDEATQVT-IQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPS 110
Query: 134 AGDFYEDQIGIVTGWGTLSYGG-PRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGY 192
D + TGWG S SDVL +V +P+ +C + + D N+C
Sbjct: 111 T-DVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGI-VTDGNICI-DS 167
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCG---KTPGVYVQVNKYLRWIYNT 248
GG +C GDSGGPL G+ S+G G P + +V +L WI
Sbjct: 168 TGGKGTCNGDSGGPLNY-----NGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQ 221
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 242 bits (620), Expect = 4e-81
Identities = 70/242 (28%), Positives = 103/242 (42%), Gaps = 25/242 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + P++ +L Q + CGGVL++ +WVLTAAHC+ +R + L +
Sbjct: 4 GREVIPHSRPYMASL--QRNGSHLCGGVLVHPKWVLTAAHCLA---------QRMAQLRL 52
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRF-SEQNYENDIALVQLSKKAQYNSFVRPVCLP 132
LG + T A +PR+ END+AL+QL K + + +RP+ LP
Sbjct: 53 VLGLHTLDSPGLT----FHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALP 108
Query: 133 QAG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IFDSNLCA 189
+ GWG GG S VL E+ + V C N + S +C
Sbjct: 109 SKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCL 168
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIY 246
C+GDSGGPL+ K + GV+S+ C P V V Y+ WI
Sbjct: 169 AADSKDQAPCKGDSGGPLVCG---KGRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIR 225
Query: 247 NT 248
Sbjct: 226 KV 227
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 242 bits (619), Expect = 4e-81
Identities = 80/245 (32%), Positives = 111/245 (45%), Gaps = 29/245 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G + P++V L +R C G LI + WVLTAAHC V
Sbjct: 4 GNEVTPHSRPYMVLL--SLDRKTICAGALIAKDWVLTAAHCNLN-----------KRSQV 50
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG + ++ TK + YP + E D+ L+QL++KA+ N +V + LP+
Sbjct: 51 ILGAHSITREEPTKQI-MLVKKEFPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPK 109
Query: 134 AG-DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN----IFDSNLC 188
G D + V GWG SD L EV I + C + N I + +C
Sbjct: 110 KGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVC 169
Query: 189 AGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGI--GCG--KTPGVYVQV-NKYLR 243
AG +GG DSC GDSG PLL + GV S+G+ CG + PGVY+ + K+L
Sbjct: 170 AGSLRGGRDSCNGDSGSPLLC-----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLN 224
Query: 244 WIYNT 248
WI T
Sbjct: 225 WIIMT 229
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 241 bits (618), Expect = 7e-81
Identities = 78/248 (31%), Positives = 118/248 (47%), Gaps = 27/248 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDN----FCGGVLINERWVLTAAHCIKQKIDNALVLRRTS 69
G+ + N WPW V+L QY+ CGG L+++ WVLTAAHCI +
Sbjct: 4 GEDARPNSWPWQVSL--QYDSSGQWRHTCGGTLVDQSWVLTAAHCIS----------SSR 51
Query: 70 DLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQ--NYENDIALVQLSKKAQYNSFVR 127
V LG + S + + + + V+ ++ + NDIAL++L+ ++
Sbjct: 52 TYRVVLGRHSLSTNEPGSLA-VKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQ 110
Query: 128 PVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IFD 184
CLP AG + + VTGWG L G D+L + + V C K +
Sbjct: 111 LGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKT 170
Query: 185 SNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWG--IGCG--KTPGVYVQVNK 240
+ +CAG G SC GDSGGPL Q + QW + G+VS+G +GC P V+ +V+
Sbjct: 171 NMICAG-GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSN 229
Query: 241 YLRWIYNT 248
Y+ WI +
Sbjct: 230 YIDWINSV 237
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 240 bits (615), Expect = 1e-80
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 25/238 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G + P+ AL CGGVLI+ WVLTAAHC K +L V
Sbjct: 4 GGPCDKTSHPYQAAL--YTSGHLLCGGVLIHPLWVLTAAHCKK------------PNLQV 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG+++ + ++ ++P + +++ DI L++L++ A+ + ++P+ L +
Sbjct: 50 FLGKHNLRQRESSQEQ-SSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLER 108
Query: 134 AGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGYK 193
+ GWG + G D + I + EC + I + LCAG K
Sbjct: 109 D-CSANTTSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEK 166
Query: 194 GGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWG-IGCG--KTPGVYVQVNKYLRWIYNT 248
G DSCQGDSGGPL+ + G+VSWG I CG + PGVY V +Y WI T
Sbjct: 167 YGKDSCQGDSGGPLVC-----GDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 240 bits (615), Expect = 2e-80
Identities = 70/243 (28%), Positives = 107/243 (44%), Gaps = 31/243 (12%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G +N+ LVA FC G LINE WVLTAAHC ++ +
Sbjct: 4 GDECNINEHRSLVAF--FNSTGFFCSGTLINEEWVLTAAHCDN------------TNFQM 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
+LG + +NE + T P + +++ + DI L++L + + + P+ LP
Sbjct: 50 KLGVHSKKVLNEDEQTRNPKEKFICPNKKNDEVLDKDIMLIKLDSRVSNSEHIVPLSLPS 109
Query: 134 AGDFYEDQIG---IVTGWG-TLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSN-LC 188
+ +G + GWG DV I + C+ + + + + LC
Sbjct: 110 S----PPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLC 165
Query: 189 AGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGI-GCGK--TPGVYVQVNKYLRWI 245
AG +GG D+C GDSGGPL+ G+VS+G CG+ PGVY +V Y WI
Sbjct: 166 AGILEGGKDTCGGDSGGPLIC-----NGQFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWI 220
Query: 246 YNT 248
+
Sbjct: 221 QSI 223
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 240 bits (615), Expect = 3e-80
Identities = 86/249 (34%), Positives = 118/249 (47%), Gaps = 28/249 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDN----FCGGVLINERWVLTAAHCIKQKIDNALVLRRTS 69
G+ + W W V+L QYE+D CGG LI WV+TA HCI +
Sbjct: 2 GEDAVPYSWSWQVSL--QYEKDGAFHHTCGGSLIAPDWVVTAGHCIS----------TSR 49
Query: 70 DLIVRLGEYDFSKVNET-KVTDIPAAAMKVYPRFSEQNYE--NDIALVQLSKKAQYNSFV 126
V LGEYD S + + +V I A + V+P ++ NDIALV+LS+ AQ V
Sbjct: 50 TYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKV 109
Query: 127 RPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IF 183
+ LP AGD + ++GWG L GGP D L + +P C + +
Sbjct: 110 QLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVK 169
Query: 184 DSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSW--GIGCG--KTPGVYVQVN 239
+ +CAGG C GDSGGPL D W + GV S+ GC K P V+ +V+
Sbjct: 170 KTMVCAGG--DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVS 227
Query: 240 KYLRWIYNT 248
++ WI T
Sbjct: 228 AFIDWIDET 236
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 237 bits (608), Expect = 1e-79
Identities = 82/239 (34%), Positives = 115/239 (48%), Gaps = 27/239 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G PW VAL CGGVL+NERWVLTAAHC ++ V
Sbjct: 4 GAPCARGSHPWQVAL--LSGNQLHCGGVLVNERWVLTAAHCKM------------NEYTV 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
LG + I A+ +P +S Q + ND+ LV+L+ +A+ +S V+ V LP
Sbjct: 50 HLGSDTLGDRRAQR---IKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPS 106
Query: 134 AGDFYEDQIGIVTGWGTLSYGG-PRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGY 192
V+GWGT + LM V + + +C K + + +S LCAG
Sbjct: 107 R-CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKDLLENSMLCAGIP 165
Query: 193 KGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWG-IGCGK--TPGVYVQVNKYLRWIYNT 248
++C GDSGGPL+ + T+ G+VSWG CG+ PGVY QV K+ +WI +T
Sbjct: 166 DSKKNACNGDSGGPLVC-----RGTLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 238 bits (609), Expect = 2e-79
Identities = 74/248 (29%), Positives = 119/248 (47%), Gaps = 28/248 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDN----FCGGVLINERWVLTAAHCIKQKIDNALVLRRTS 69
G ++ N WP ++L QY + CGG LI + WV+TAAHC+ R
Sbjct: 4 GTEAQRNSWPSQISL--QYRSGSSWAHTCGGTLIRQNWVMTAAHCVD----------REL 51
Query: 70 DLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQN--YENDIALVQLSKKAQYNSFVR 127
V +GE++ ++ N T+ + + V+P ++ + DIAL++L++ NS+V+
Sbjct: 52 TFRVVVGEHNLNQNNGTEQY-VGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQ 110
Query: 128 PVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IFD 184
LP+AG + +TGWG G + L + +P C + +
Sbjct: 111 LGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKN 170
Query: 185 SNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWG--IGCG--KTPGVYVQVNK 240
S +CA G G CQGDSGGPL + Q+ + GV S+ +GC + P V+ +V+
Sbjct: 171 SMVCA-GGDGVRSGCQGDSGGPLHCLV-NGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSA 228
Query: 241 YLRWIYNT 248
Y+ WI N
Sbjct: 229 YISWINNV 236
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 237 bits (608), Expect = 3e-79
Identities = 86/258 (33%), Positives = 122/258 (47%), Gaps = 28/258 (10%)
Query: 1 CGR----NGKQTAKIDKGQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCI 55
CG+ K ++ G + + WPW V+L + FCGG LI+ WVLTAAHC+
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSL--RTRFGMHFCGGTLISPEWVLTAAHCL 61
Query: 56 KQKIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQ 115
++ S V LG + + I + + + P DIAL++
Sbjct: 62 EKSPR-------PSSYKVILGAHQEVNLEPHVQE-IEVSRLFLEPTR------KDIALLK 107
Query: 116 LSKKAQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTEC 174
LS A V P CLP + +TGWG G + +L E +PV C
Sbjct: 108 LSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQ-GTFGAGLLKEAQLPVIENKVC 166
Query: 175 RKQFSQN--IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCG--K 230
+ N + + LCAG GGTDSCQGD+GGPL+ DK + + GV SWG+GC
Sbjct: 167 NRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDK-YILQGVTSWGLGCARPN 225
Query: 231 TPGVYVQVNKYLRWIYNT 248
PGVYV+V++++ WI
Sbjct: 226 KPGVYVRVSRFVTWIEGV 243
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 236 bits (604), Expect = 6e-79
Identities = 75/242 (30%), Positives = 110/242 (45%), Gaps = 29/242 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + PW AL CGGVL+ +RWVLTAAHC K V
Sbjct: 4 GRECIPHSQPWQAAL--FQGERLICGGVLVGDRWVLTAAHCKK------------QKYSV 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYE---NDIALVQLSKKAQYNSFVRPVC 130
RLG++ ++ + I A +P ++ N E +DI L++L A V+PV
Sbjct: 50 RLGDHSLQSRDQPEQE-IQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQ 108
Query: 131 LPQAGDFYEDQIGIVTGWG-TLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCA 189
L Q I++GWG S + L + ++ +C + + I + +CA
Sbjct: 109 LANL-CPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCA 167
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQVNKYLRWIY 246
G G D+CQGDSGGPL+ + G+ SWG CG + PGVY ++ +Y WI
Sbjct: 168 -GSSNGADTCQGDSGGPLVC-----DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIK 221
Query: 247 NT 248
T
Sbjct: 222 KT 223
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 235 bits (602), Expect = 2e-78
Identities = 72/250 (28%), Positives = 110/250 (44%), Gaps = 36/250 (14%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G E N PW VA+ Y++++ CGGVL++ WVLTAAHC V
Sbjct: 4 GFNCEKNSQPWQVAV--YYQKEHICGGVLLDRNWVLTAAHCYV------------DQYEV 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFS-----------EQNYENDIALVQLSKKAQY 122
LG+ + + + +P F+ ++ +D+ L++LSK A
Sbjct: 50 WLGKNKLFQEEPSAQH-RLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADI 108
Query: 123 NSFVRPVCLPQAGDFYEDQIGIVTGWG-TLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN 181
V+P+ LP + + +GWG + D L V I + C K + Q
Sbjct: 109 TDVVKPIALPTK-EPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQK 167
Query: 182 IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWG-IGCG--KTPGVYVQV 238
+ D LCAG GG D+C+ DSGGPL+ + G S+G + CG P +Y +
Sbjct: 168 VTDVMLCAGEMGGGKDTCRDDSGGPLIC-----DGILQGTTSYGPVPCGKPGVPAIYTNL 222
Query: 239 NKYLRWIYNT 248
K+ WI +T
Sbjct: 223 IKFNSWIKDT 232
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 234 bits (600), Expect = 4e-78
Identities = 73/248 (29%), Positives = 117/248 (47%), Gaps = 29/248 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDN----FCGGVLINERWVLTAAHCIKQKIDNALVLRRTS 69
G+ ++ N WPW ++L QY+ + CGG LI + WV+TAAHC+
Sbjct: 4 GRVAQPNSWPWQISL--QYKSGSSYYHTCGGSLIRQGWVMTAAHCVD----------SAR 51
Query: 70 DLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYE--NDIALVQLSKKAQYNSFVR 127
V LGE++ + + + ++ ++ ++ + DIAL++L+ +A NS V+
Sbjct: 52 TWRVVLGEHNLNTNEGKEQI-MTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQ 110
Query: 128 PVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IFD 184
LP + + +TGWG S GGP SD L + +P C +
Sbjct: 111 LAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKT 170
Query: 185 SNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSW--GIGCG--KTPGVYVQVNK 240
+ +CAGG G C GDSGGPL Q + + + GV S+ GC K P V+ +V+
Sbjct: 171 TMVCAGG--GANSGCNGDSGGPLNCQV-NGSYYVHGVTSFVSSSGCNASKKPTVFTRVSA 227
Query: 241 YLRWIYNT 248
Y+ W+
Sbjct: 228 YISWMNGI 235
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 234 bits (599), Expect = 2e-77
Identities = 51/256 (19%), Positives = 87/256 (33%), Gaps = 30/256 (11%)
Query: 1 CGR--NGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQK 58
C + +A ++ D PW V L E +FCGGV+I E +VLT A C
Sbjct: 41 CVPHDQCACGVLTSEKRAPDLQDLPWQVKL-TNSEGKDFCGGVIIRENFVLTTAKCS--- 96
Query: 59 IDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSK 118
++ V+ I + V+ R+ END++L++L
Sbjct: 97 -------LLHRNITVKTYFNR----TSQDPLMIKITHVHVHMRYDADAGENDLSLLELEW 145
Query: 119 KAQYNSFVRPVCLPQAG----DFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTEC 174
Q PVC P+ G+++GW G + L P+ + EC
Sbjct: 146 PIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEEC 203
Query: 175 RKQFSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TP 232
+ + + C + G + + W + GV+ G
Sbjct: 204 GQVLNVTVTTRTYCER---SSVAAMHWMDGSV-VTREHRGSWFLTGVLGSQ-PVGGQAHM 258
Query: 233 GVYVQVNKYLRWIYNT 248
+ +V++Y W
Sbjct: 259 VLVTKVSRYSLWFKQI 274
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 232 bits (594), Expect = 2e-77
Identities = 65/242 (26%), Positives = 104/242 (42%), Gaps = 29/242 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDN-FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
G ++ + P++ +L+ + + FCGG LI+ +VLTAAHC++ +
Sbjct: 4 GHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDI--------PQRLVN 55
Query: 73 VRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLP 132
V LG ++ T+ A + + +N NDI L+QLS A ++ V V LP
Sbjct: 56 VVLGAHNVRTQEPTQQH-FSVAQV-FLNNYDAENKLNDILLIQLSSPANLSASVATVQLP 113
Query: 133 QAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGG 191
Q + GWG + P + VL E+ + V + N+C
Sbjct: 114 QQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTV---------VTFFCRPHNICTFV 164
Query: 192 YKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGI-GCG--KTPGVYVQVNKYLRWIYNT 248
+ C GDSGGPL+ I G+ S+ I GC P + +V Y+ WI +T
Sbjct: 165 PRRKAGICFGDSGGPLIC-----DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219
Query: 249 AK 250
+
Sbjct: 220 LR 221
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 232 bits (595), Expect = 2e-77
Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 19/233 (8%)
Query: 20 NDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIVRLGEYD 79
+ PW V+L R + +FCGG L+ E+W+LTA C + V LG
Sbjct: 7 GNSPWTVSL-RNRQGQHFCGGSLVKEQWILTARQCFSSCHMPL------TGYEVWLGTLF 59
Query: 80 FS-KVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQAGD-F 137
+ + E + +P A M P + + L++L + N V +CLP
Sbjct: 60 QNPQHGEPSLQRVPVAKMVCGPSG------SQLVLLKLERSVTLNQRVALICLPPEWYVV 113
Query: 138 YEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGYKGGTD 197
+ GWG G VL + V EC + + +S +C G
Sbjct: 114 PPGTKCEIAGWGETKGTGN-DTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVG 172
Query: 198 SCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQVNKYLRWIYNT 248
+C+GD GGPL + W + G++ C + P V+ +V+ ++ WI+
Sbjct: 173 ACEGDYGGPLACFTHNS-WVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKV 224
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 232 bits (595), Expect = 3e-77
Identities = 74/250 (29%), Positives = 107/250 (42%), Gaps = 36/250 (14%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
Q N PW VA+ CGGVL++ WVLTAAHC V
Sbjct: 7 SQVDCENSQPWHVAV--YRFNKYQCGGVLLDRNWVLTAAHCYN------------DKYQV 52
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFS-----------EQNYENDIALVQLSKKAQY 122
LG+ +F + + + +P F+ E +Y ND+ L++LSK A
Sbjct: 53 WLGKNNFLEDEPSDQH-RLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADI 111
Query: 123 NSFVRPVCLPQAGDFYEDQIGIVTGWG-TLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN 181
V+P+ LP + + +GWG T D L V + + +C K
Sbjct: 112 TDVVKPITLPTE-EPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMK 170
Query: 182 IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGI-GCG--KTPGVYVQV 238
+ D+ LCAG GG+ +C+ DSGGPL+ + G+ SWG CG P VY ++
Sbjct: 171 VTDAMLCAGEMDGGSYTCEHDSGGPLIC-----DGILQGITSWGPEPCGEPTEPSVYTKL 225
Query: 239 NKYLRWIYNT 248
K+ WI T
Sbjct: 226 IKFSSWIRET 235
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 232 bits (593), Expect = 4e-77
Identities = 63/253 (24%), Positives = 107/253 (42%), Gaps = 42/253 (16%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G E + PW VA+ ++ CGGVL++ +WVLTAAHC+ D +
Sbjct: 4 GWECEKHSKPWQVAV--YHQGHFQCGGVLVHPQWVLTAAHCMS------------DDYQI 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRF-----------SEQNYENDIALVQLSKKAQY 122
LG ++ SK +T + + P+F + +D+ L++L++ A+
Sbjct: 50 WLGRHNLSKDEDTAQF-HQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARI 108
Query: 123 NSFVRPVCLPQAGDFYEDQIG---IVTGWG-TLSYGGPRSDVLMEVPIPVWRLTECRKQF 178
V+ + LP E ++G +GWG ++ S L V + + +C + +
Sbjct: 109 TDAVKILDLPTQ----EPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAY 164
Query: 179 SQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVY 235
+ + + LCA C GDSGG L+ G+ SWG C V+
Sbjct: 165 PEKMTEFVLCATHRDDSGSICLGDSGGALIC-----DGVFQGITSWGYSECADFNDNFVF 219
Query: 236 VQVNKYLRWIYNT 248
+V + +WI T
Sbjct: 220 TKVMPHKKWIKET 232
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 231 bits (591), Expect = 8e-77
Identities = 75/254 (29%), Positives = 118/254 (46%), Gaps = 43/254 (16%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G E + PW AL + CGG+L++ +WVLTAAHCI + +
Sbjct: 4 GWECEQHSQPWQAAL--YHFSTFQCGGILVHRQWVLTAAHCIS------------DNYQL 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRF-----------SEQNYENDIALVQLSKKAQ- 121
LG ++ T + + +P F ++++Y +D+ L++L++ A
Sbjct: 50 WLGRHNLFDDENTAQF-VHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADT 108
Query: 122 YNSFVRPVCLPQAGDFYEDQIG---IVTGWGTLSY-GGPRSDVLMEVPIPVWRLTECRKQ 177
V+ V LP E ++G + +GWG++ D L V + + EC+K
Sbjct: 109 ITDAVKVVELPTE----EPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKA 164
Query: 178 FSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWG-IGCG--KTPGV 234
Q + D LC G +GG D+C GDSGGPL+ + GV SWG + CG P V
Sbjct: 165 HVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMC-----DGVLQGVTSWGYVPCGTPNKPSV 219
Query: 235 YVQVNKYLRWIYNT 248
V+V Y++WI +T
Sbjct: 220 AVRVLSYVKWIEDT 233
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 230 bits (590), Expect = 1e-76
Identities = 71/250 (28%), Positives = 104/250 (41%), Gaps = 38/250 (15%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G E N PW VA+ +Y CGGVLI+ WV+TAAHC V
Sbjct: 4 GYKCEKNSQPWQVAVINEY----LCGGVLIDPSWVITAAHCYSNNY------------QV 47
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRF-----------SEQNYENDIALVQLSKKAQY 122
LG + K +P + ++ ND+ L+ LS+ A
Sbjct: 48 LLGRNNLFKDEPFAQR-RLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADI 106
Query: 123 NSFVRPVCLPQAGDFYEDQIGIVTGWGTLSYGGPR-SDVLMEVPIPVWRLTECRKQFSQN 181
V+ + LP + + +GWG+ + S L V I + +C + + N
Sbjct: 107 TGGVKVIDLPTK-EPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKDN 165
Query: 182 IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CG--KTPGVYVQV 238
+ D LCAG +GG D+C GDSGGPL+ + G+ S G C KTP +Y ++
Sbjct: 166 VTDVMLCAGEMEGGKDTCAGDSGGPLI-----CDGVLQGITSGGATPCAKPKTPAIYAKL 220
Query: 239 NKYLRWIYNT 248
K+ WI
Sbjct: 221 IKFTSWIKKV 230
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 240 bits (615), Expect = 1e-76
Identities = 72/257 (28%), Positives = 115/257 (44%), Gaps = 24/257 (9%)
Query: 1 CGR---NGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQ 57
CG + +I G+ +++ D PW VA+ + CGG+ I W+LTAAHC++
Sbjct: 309 CGVKNRMHIRRKRIVGGKRAQLGDLPWQVAI--KDASGITCGGIYIGGCWILTAAHCLRA 366
Query: 58 KIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLS 117
+T + D+ + ++ + + ++ Y+NDIAL+++
Sbjct: 367 --------SKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFHENYNAGTYQNDIALIEMK 418
Query: 118 KKAQYN----SFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLT 172
K P C+P + F + IV+GWG L + + ++
Sbjct: 419 KDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNER-VFSLQWGEVKL--IS 475
Query: 173 ECRKQFSQNIFDSN-LCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK- 230
C K + ++ CAG Y G D+C+GDSGGPL+ + + GVVSWG CGK
Sbjct: 476 NCSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKP 535
Query: 231 -TPGVYVQVNKYLRWIY 246
PGVY +V Y WI
Sbjct: 536 EFPGVYTKVANYFDWIS 552
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 230 bits (590), Expect = 2e-76
Identities = 87/251 (34%), Positives = 122/251 (48%), Gaps = 30/251 (11%)
Query: 14 GQASEVNDWPWLVAL-KRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLI 72
GQ + + WPW V+L R +FCGG LI+ +WVLTAAHC+ + + + L
Sbjct: 4 GQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDL------ATLR 57
Query: 73 VRLGEYDFSKVNET-KVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCL 131
V+L E ++ V+ I V+P+F DIAL++L + +S V V L
Sbjct: 58 VQLREQHLYYQDQLLPVSRI-----IVHPQFYIIQTGADIALLELEEPVNISSRVHTVML 112
Query: 132 PQAGD-FYEDQIGIVTGWGTLSYGGPRSD--VLMEVPIPVWRLTECRKQFSQN------- 181
P A + F VTGWG + P L +V +P+ C ++
Sbjct: 113 PPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDV 172
Query: 182 --IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQ 237
I D LCAG DSCQGDSGGPL+ + + W GVVSWG GC + PG+Y +
Sbjct: 173 RIIRDDMLCAGN--SQRDSCQGDSGGPLVCKV-NGTWLQAGVVSWGEGCAQPNRPGIYTR 229
Query: 238 VNKYLRWIYNT 248
V YL WI++
Sbjct: 230 VTYYLDWIHHY 240
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 230 bits (589), Expect = 2e-76
Identities = 66/241 (27%), Positives = 106/241 (43%), Gaps = 25/241 (10%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G + + W+V+L +Y + CGG LI E WVLTA C R D
Sbjct: 4 GIPTR-TNIGWMVSL--RYRNKHICGGSLIKESWVLTARQCFPS--------RDLKDYEA 52
Query: 74 RLGEYDFSKVNETKVT-DIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLP 132
LG +D + K + + + P +D+ L++L++ A + FV + LP
Sbjct: 53 WLGIHDVHGRGDEKCKQVLNVSQLVYGPEG------SDLVLMKLARPAVLDDFVSTIDLP 106
Query: 133 QAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IFDSNLCA 189
G E V GWG +L + + +C + + +S +CA
Sbjct: 107 NYGSTIPEKTSCSVYGWGYTG-LINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICA 165
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVYVQVNKYLRWIYN 247
G K G+ C+GD GGPL+ ++ K ++GV+ G GC PG++V+V Y +WI+
Sbjct: 166 GAEKIGSGPCEGDYGGPLVCEQ-HKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHK 224
Query: 248 T 248
Sbjct: 225 I 225
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 229 bits (586), Expect = 5e-76
Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 42/253 (16%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G E + PW V + CGGVL++ +WVLTAAHCI+ + ++
Sbjct: 4 GWECEKHSQPWQVLV--ASRGRAVCGGVLVHPQWVLTAAHCIR------------NKSVI 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFS-----------EQNYENDIALVQLSKKAQY 122
LG + +T + +P + + +D+ L++LS+ A+
Sbjct: 50 LLGRHSLFHPEDTGQV-FQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAEL 108
Query: 123 NSFVRPVCLPQAGDFYEDQIG---IVTGWG-TLSYGGPRSDVLMEVPIPVWRLTECRKQF 178
V+ + LP E +G +GWG L V + V C +
Sbjct: 109 TDAVKVMDLPTQ----EPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVH 164
Query: 179 SQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGI-GCG--KTPGVY 235
Q + LCAG + GG +C GDSGGPL+ + G+ SWG C + P +Y
Sbjct: 165 PQKVTKFMLCAGRWTGGKSTCSGDSGGPLVC-----NGVLQGITSWGSEPCALPERPSLY 219
Query: 236 VQVNKYLRWIYNT 248
+V Y +WI +T
Sbjct: 220 TKVVHYRKWIKDT 232
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 224 bits (573), Expect = 5e-73
Identities = 50/241 (20%), Positives = 85/241 (35%), Gaps = 28/241 (11%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
+A ++ D PW V L +D FCGGV+I E +VLT A C ++ V
Sbjct: 97 KRAPDLQDLPWQVKLTNSEGKD-FCGGVIIRENFVLTTAKCSL----------LHRNITV 145
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
+ I + V+ R+ END++L++L Q PVC P+
Sbjct: 146 KTYFNR----TSQDPLMIKITHVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPE 201
Query: 134 AGD----FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCA 189
G+++GW G + L P+ + EC + + + C
Sbjct: 202 KDFAEHLLIPRTRGLLSGWARN--GTDLGNSLTTRPVTLVEGEECGQVLNVTVTTRTYCE 259
Query: 190 GGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGK--TPGVYVQVNKYLRWIYN 247
+ G + + W + GV+ G + +V++Y W
Sbjct: 260 R---SSVAAMHWMDGSVVTREHRGS-WFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQ 314
Query: 248 T 248
Sbjct: 315 I 315
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 218 bits (558), Expect = 8e-72
Identities = 62/243 (25%), Positives = 107/243 (44%), Gaps = 31/243 (12%)
Query: 14 GQASEVNDWPWLVALKRQYERDN--FCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDL 71
G + +P+ L + +CGG LI+ +W+LTAAHC+ +A +
Sbjct: 4 GYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCV----HDA------VSV 53
Query: 72 IVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCL 131
+V LG E + + + + + F+ Y ND+AL+++ +Y ++P+ L
Sbjct: 54 VVYLGSAVQ---YEGEAV-VNSERIISHSMFNPDTYLNDVALIKIPH-VEYTDNIQPIRL 108
Query: 132 PQAGDF---YEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN-IFDSNL 187
P + +E+ V+GWG + + +L V C +++ I +S +
Sbjct: 109 PSGEELNNKFENIWATVSGWGQSNTD---TVILQYTYNLVIDNDRCAQEYPPGIIVESTI 165
Query: 188 CAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCG---KTPGVYVQVNKYLRW 244
C G C GDSGGP +L + +IGVVS+ G G P + +V Y+ W
Sbjct: 166 CGDT-SDGKSPCFGDSGGPFVLS---DKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDW 221
Query: 245 IYN 247
I
Sbjct: 222 IQQ 224
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 212 bits (541), Expect = 3e-66
Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 76/301 (25%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDN--FCGGVLINERWVLTAAHCIKQK 58
CG + + ++ + PW + C G +++E +VLTAAHC
Sbjct: 211 CGM------VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVD 264
Query: 59 IDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSE---------QNYEN 109
+ + V +G + ++ + +P ++ + Y+
Sbjct: 265 -------DKEHSIKVSVGGEK----RDLEIEVV-----LFHPNYNINGKKEAGIPEFYDY 308
Query: 110 DIALVQLSKKAQYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYG------------GP 156
D+AL++L K +Y +RP+CLP ++ T
Sbjct: 309 DVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSE 368
Query: 157 RSDVLMEVPIPVWRLTECR---------------KQFSQNIFDSNLCAGGYKG--GTDSC 199
L + + + K S+ + LC GG ++C
Sbjct: 369 EEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTC 428
Query: 200 QGDSGGPLLLQRPDKQWTIIGVVSWGI--GCGK----------TPGVYVQVNKYLRWIYN 247
+GDSGGPL++ + ++ +GV+SWG+ C ++ + + L W+
Sbjct: 429 RGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKE 487
Query: 248 T 248
Sbjct: 488 K 488
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 209 bits (533), Expect = 6e-65
Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 66/295 (22%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKID 60
CG AS+ PW V + + + C G LI+++WVLTAAHC + D
Sbjct: 220 CGV------GNMSANASDQERTPWHVTI--KPKSQETCRGALISDQWVLTAAHCFRDGND 271
Query: 61 NALVLRRTSDLIVRLGEYDFSKVNETKVTDI---PA-AAMKVYPRFSEQNYENDIALVQL 116
+ S V +G+ E + P + + Y +DIAL++L
Sbjct: 272 H-------SLWRVNVGDPKSQWGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKL 324
Query: 117 SKKAQYNSFVRPVCLPQAGD------FYEDQIGIVTGWGTLSYGGPRSDV--LMEVPIPV 168
++K + ++ RP+CLP + + L+ + L + +
Sbjct: 325 AQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNI 384
Query: 169 WRL-----TECRKQFSQN-------------IFDSNLCAGGYKGGTDSCQGDSGGPLLLQ 210
T C + SQ + D LC+ G + C+G+SGG + L+
Sbjct: 385 NLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCS-GTQEDESPCKGESGGAVFLE 443
Query: 211 RPDKQWTIIGVVSWGI-----GCGK--------------TPGVYVQVNKYLRWIY 246
R ++ +G+VSWG+ G ++ + + W+
Sbjct: 444 R-RFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLR 497
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 213 bits (544), Expect = 1e-64
Identities = 86/253 (33%), Positives = 120/253 (47%), Gaps = 22/253 (8%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKID 60
K ++ G + + WPW V+L R +FCGG LI+ WVLTAAHC+++
Sbjct: 552 QVEPKKCPGRVVGGCVAHPHSWPWQVSL-RTRFGMHFCGGTLISPEWVLTAAHCLEKSPR 610
Query: 61 NALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKA 120
S V LG + + I + + + P DIAL++LS A
Sbjct: 611 -------PSSYKVILGAHQEVNLEPHVQE-IEVSRLFLEP------TRKDIALLKLSSPA 656
Query: 121 QYNSFVRPVCLPQAGD-FYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFS 179
V P CLP + +TGWG G + +L E +PV C +
Sbjct: 657 VITDKVIPACLPSPNYVVADRTECFITGWGETQ-GTFGAGLLKEAQLPVIENKVCNRYEF 715
Query: 180 QN--IFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCG--KTPGVY 235
N + + LCAG GGTDSCQGDSGGPL+ DK + + GV SWG+GC PGVY
Sbjct: 716 LNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDK-YILQGVTSWGLGCARPNKPGVY 774
Query: 236 VQVNKYLRWIYNT 248
V+V++++ WI
Sbjct: 775 VRVSRFVTWIEGV 787
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 194 bits (495), Expect = 7e-58
Identities = 54/301 (17%), Positives = 102/301 (33%), Gaps = 76/301 (25%)
Query: 1 CGRNGKQTAKIDKGQASEVNDWPWLVALKRQYERDN--FCGGVLINERWVLTAAHCIKQK 58
CG + + ++ + PW + C G +++E +VLTAAHC
Sbjct: 453 CGM------VWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVD 506
Query: 59 IDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSE---------QNYEN 109
+ + V +G D+ + +P ++ + Y+
Sbjct: 507 -------DKEHSIKVSVGGEK---------RDLEIEVVLFHPNYNINGKKEAGIPEFYDY 550
Query: 110 DIALVQLSKKAQYNSFVRPVCLP------QAGDFYEDQIGIVTGWGTLSYGG-------P 156
D+AL++L K +Y +RP+CLP +A L
Sbjct: 551 DVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSE 610
Query: 157 RSDVLMEVPIPVWRLTECR---------------KQFSQNIFDSNLCAGGYKG--GTDSC 199
L + + + K S+ + LC GG ++C
Sbjct: 611 EEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTC 670
Query: 200 QGDSGGPLLLQRPDKQWTIIGVVSWGIGCG------------KTPGVYVQVNKYLRWIYN 247
+GDSGGPL++ + ++ +GV+SWG+ ++ + + L W+
Sbjct: 671 RGDSGGPLIVHK-RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKE 729
Query: 248 T 248
Sbjct: 730 K 730
>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_B 1hia_B
Length = 152
Score = 157 bits (399), Expect = 6e-49
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 12/150 (8%)
Query: 105 QNYENDIALVQLSKKAQYNSFVRPVCLPQAGDFYEDQIGIVTGWGTLSYGGPR---SDVL 161
++Y +D+ L++L A+ V+ + LP + +GWG++ G D +
Sbjct: 4 KDYSHDLMLLRLQSPAKITDAVKVLELPTQ-EPELGSTCEASGWGSIEPGPDDFEFPDEI 62
Query: 162 MEVPIPVWRLTECRKQFSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGV 221
V + + + T C + +S LCAG GG D+C GDSGGPL+ + W G+
Sbjct: 63 QCVQLTLLQNTFCADAHPDKVTESMLCAGYLPGGKDTCMGDSGGPLIC---NGMWQ--GI 117
Query: 222 VSWGIG-CGKT--PGVYVQVNKYLRWIYNT 248
SWG CG P +Y ++ YL WI +T
Sbjct: 118 TSWGHTPCGSANKPSIYTKLIFYLDWIDDT 147
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 135 bits (343), Expect = 8e-41
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ + WPW V+L+ + +FCGG LINE WV+TAAHC T+ +V
Sbjct: 4 GEEAVPGSWPWQVSLQDKTGF-HFCGGSLINENWVVTAAHCGV-----------TTSDVV 51
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQ 133
GE+D +E + A + +++ NDI L++LS A ++ V VCLP
Sbjct: 52 VAGEFDQGSSSEKIQK-LKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPS 110
Query: 134 AGD-FYEDQIGIVTGWGTLSY 153
A D F + TGWG Y
Sbjct: 111 ASDDFAAGTTCVTTGWGLTRY 131
>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C*
1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C
1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...
Length = 97
Score = 119 bits (300), Expect = 1e-34
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 155 GPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDK 214
D L + +P+ T C+K + I D+ +CAG G SC GDSGGPL+ ++ +
Sbjct: 1 ANTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKK-NG 57
Query: 215 QWTIIGVVSWGIGCGKT--PGVYVQVNKYLRWIYNT 248
WT++G+VSWG T PGVY +V + W+ T
Sbjct: 58 AWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 93
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 91.2 bits (226), Expect = 2e-22
Identities = 36/238 (15%), Positives = 68/238 (28%), Gaps = 35/238 (14%)
Query: 12 DKGQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDL 71
+ + + P+ ++ + C G LI +LT HC+ ++
Sbjct: 7 GRTKVANTRVAPY-NSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASR----SYSAKG 61
Query: 72 IVRLGEYDFSKVNETKVTDIPAAAMKVYPR-FSEQNYENDIALVQLSKKAQYNSFVRPVC 130
V G D + V + + D A+++ V
Sbjct: 62 SVYPGMND----STAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNT--VGYRS 115
Query: 131 LPQAGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAG 190
+ Q + I I G+ E+ V R +
Sbjct: 116 IRQVTNLTGTTIKIS-GYPGDKMRSTGKVSQWEMSGSVTREDTNLAYY------------ 162
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNK-YLRWIYN 247
D+ G+SG +L D+ I+GV + G G T + ++ +I
Sbjct: 163 ----TIDTFSGNSGSAML----DQNQQIVGVHNAGYSNG-TINGGPKATAAFVEFINY 211
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 82.6 bits (205), Expect = 9e-21
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
Query: 14 GQASEVNDWPWLVALKRQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
G+ E N PW VA+ + CGGVL+N +WVLTAAHC + V
Sbjct: 4 GRECEKNSHPWQVAI--YHYSSFQCGGVLVNPKWVLTAAHCKN------------DNYEV 49
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFS 103
LG ++ + T A +P F+
Sbjct: 50 WLGRHNLFENENTAQF-FGVTADFPHPGFN 78
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 69.7 bits (170), Expect = 1e-14
Identities = 32/239 (13%), Positives = 61/239 (25%), Gaps = 33/239 (13%)
Query: 18 EVNDWPWLVALK-RQYERDNFCGGVLI---NERWVLTAAHCIKQKIDNALVLRRTSDLIV 73
D P + + + D C ++ N+ V TA HC+ + +
Sbjct: 2 NPADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFA----RNFVF 57
Query: 74 RLGEYDFSKVNETKVTDIPAAAMKVYPRFSE-QNYENDIALVQLSKKAQYNSFVRPVCLP 132
E++ A + ++ ++E+D A L
Sbjct: 58 APAYDY----GESEHGVWAAEELVTSAEWANRGDFEHDYAFAVLET-------------- 99
Query: 133 QAGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQN--IFDSNLCAG 190
V +++ PR P ++ S + + + +
Sbjct: 100 ---KGGTTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGTATNDPMGSS 156
Query: 191 GYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYNTA 249
+ G SGGP L S+G + YN A
Sbjct: 157 TQGIPCNMTGGSSGGPWFLGN-GTGGAQNSTNSYGYTFLPNVMFGPYFGSGAQQNYNYA 214
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 51.6 bits (123), Expect = 5e-08
Identities = 36/234 (15%), Positives = 73/234 (31%), Gaps = 45/234 (19%)
Query: 12 DKGQASEVNDWPW--LVALKRQYERDNFCG-GVLINERWVLTAAHCIKQKIDNALVLRRT 68
D+ Q ++ + + + ++ + F GV++ + +LT H + + L+
Sbjct: 7 DRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAF 66
Query: 69 SDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRP 128
+ Y ++T E D+A+V+ S Q
Sbjct: 67 PSA-INQDNYPNGGFTAEQITKYSG--------------EGDLAIVKFSPNEQNKHIGEV 111
Query: 129 VCLPQAGDFYEDQIG---IVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDS 185
V + E Q+ VTG Y G + M W
Sbjct: 112 VKPATMSNNAETQVNQNITVTG-----YPGDKPVATM------WESKGKITYLKGEAMQY 160
Query: 186 NLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVN 239
+ + G+SG P+ +++ +IG+ G+ V++ N
Sbjct: 161 D---------LSTTGGNSGSPVF----NEKNEVIGIHWGGVPNEFNGAVFINEN 201
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 41.0 bits (95), Expect = 2e-04
Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 39/239 (16%)
Query: 12 DKGQASEVNDWPW--LVALKRQYERDNFCG-GVLINERWVLTAAHCIKQKIDNALVLRRT 68
D+ Q ++ + + + ++ + F GV++ + +LT H + +
Sbjct: 7 DRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDAT-HGDPHALKA 65
Query: 69 SDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRP 128
+ Y ++T E D+A+V+ S Q
Sbjct: 66 FPSAINQDNYPNGGFTAEQITKYSG--------------EGDLAIVKFSPNEQNKHIGEV 111
Query: 129 VCLPQAGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLC 188
V + E Q Y G + M W +
Sbjct: 112 VKPATMSNNAETQTN--QNITVTGYPGDKPVATM------WESKGKITYLKGEAMQYD-- 161
Query: 189 AGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGVYVQVNKYLRWIYN 247
+ G+SG P+ +++ +IG+ G+ V++ N N
Sbjct: 162 -------LSTTGGNSGSPVF----NEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQN 209
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 39.9 bits (93), Expect = 3e-04
Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 40/202 (19%)
Query: 30 RQYERDNFCG-GVLINERWVLTAAHCIKQKIDNALVLRRTSDLIVRLGEYDFSKVNETKV 88
+ + + GVLI + ++T H ++ N S++I + ++ NE
Sbjct: 41 TVFVKGSTLATGVLIGKNTIVTNYHVAREAAKN------PSNIIFTPAQNRDAEKNEFPT 94
Query: 89 TDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQAGDFYEDQIG---IV 145
A ++ + S D+A+++L + S + D + G +
Sbjct: 95 PYGKFEAEEI--KESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSL 152
Query: 146 TGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGYKGGTDSCQGDSGG 205
G+ Y + + I N Y G T+ G+SG
Sbjct: 153 LGY---PYNYSAYSL-----------------YQSQIEMFN--DSQYFGYTEV--GNSGS 188
Query: 206 PLLLQRPDKQWTIIGVVSWGIG 227
+ + + +IG+ S G
Sbjct: 189 GIF----NLKGELIGIHSGKGG 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 29/251 (11%), Positives = 54/251 (21%), Gaps = 95/251 (37%)
Query: 4 NGKQTAKIDKGQASEVNDW-PWLVAL--KRQYER-----DNFCGGVLINERWVLTA--AH 53
N + ++ L L + YE N + A
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQNAKAWNAFNLS 265
Query: 54 CIKQKIDNALVLRRTSDLI----------VRLGEYD-----------FSKVNETKVTDIP 92
C KI L+ R + + L + K + + D+P
Sbjct: 266 C---KI---LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 93 AAAMKVYP------------------RFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQA 134
+ P + N + +++ S + R
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR------- 372
Query: 135 GDFYEDQIGIVTGWGTLSYGGPRSDVLME-VPIP------VWR--LTECRKQFSQNIFDS 185
++ LS V IP +W + +
Sbjct: 373 -KMFDR----------LS-------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 186 NLCAGGYKGGT 196
+L K T
Sbjct: 415 SLVEKQPKEST 425
Score = 35.2 bits (80), Expect = 0.022
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 21/107 (19%)
Query: 30 RQYERDNFCGGVLINERWVLTAAHCIKQKIDNALVLRRTS----DLIVRLGEY-----DF 80
ER V ++ R+ ++QKI + S + + +L Y D
Sbjct: 485 EHPERMTLFRMVFLDFRF-------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 81 SKVNETKVTDIPAAAMKVYPRFSEQNYENDIA-LVQLSKKAQYNSFV 126
E V I + P+ E + L++++ A+ +
Sbjct: 538 DPKYERLVNAI----LDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 31.4 bits (70), Expect = 0.32
Identities = 28/212 (13%), Positives = 50/212 (23%), Gaps = 74/212 (34%)
Query: 25 LVALKRQYERDNFCGGVLINERWVLTAAHC--IKQKIDNALVLRRTSDLIVRLGEYDFSK 82
L + + + C V + +L+ I D R ++ E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE----- 76
Query: 83 VNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQAGDFYEDQI 142
++ +F E+ + + K + Y +Q
Sbjct: 77 --------------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT------RMYIEQR 116
Query: 143 GIVTGWGTLSYGGPRSDVLMEVPI--PVWRLTECRKQFSQNIFDSNLCAGGYKGGTDSCQ 200
+ Y + V P +L +
Sbjct: 117 DRL-------YNDNQVFAKYNVSRLQPYLKLRQA-------------------------- 143
Query: 201 GDSGGPLLLQRPDKQWTIIGVVSWG-IGCGKT 231
LL RP K V+ G +G GKT
Sbjct: 144 ------LLELRPAK-----NVLIDGVLGSGKT 164
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 35.8 bits (81), Expect = 0.008
Identities = 31/227 (13%), Positives = 60/227 (26%), Gaps = 30/227 (13%)
Query: 17 SEVNDWPWLVALKRQYERDN--FCGGVLIN------ERWVLTAAHCIKQKIDNALVLRRT 68
E + ++ Y + C G L+N + + LTA HC A +
Sbjct: 13 PEGDGRRDIIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVY 72
Query: 69 SDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFSEQNYENDIALVQLSKKAQYNSFVRP 128
+ + + D + + +D L++L+ A +
Sbjct: 73 WNYQNSTCRAPNTPAS-GANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLFW 131
Query: 129 VCLPQAGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVWRLTECRKQFSQNI--FDSN 186
+ Y I I + T + ++
Sbjct: 132 AGWDRRDQNYPGAIAIHHPNVA--------------EKRISNSTSPTSFVAWGGGAGTTH 177
Query: 187 LCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIG-CGKTP 232
L G + G SG P+ + ++G + G C T
Sbjct: 178 LNVQWQPSGGVTEPGSSGSPIY----SPEKRVLGQLHGGPSSCSATG 220
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 32.5 bits (74), Expect = 0.080
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 44/192 (22%)
Query: 40 GVLINERWVLTAAHCIKQKIDNALVLRRTSDLIVRLGEYDFSKVNET-KVTDIPAAAMKV 98
G ++ + +LT H K + + G Y K+ D+ + ++V
Sbjct: 26 GFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDV--SVIQV 83
Query: 99 YPRFSEQNYENDIALVQLSKKAQYNSFVRPVCL---PQAGDFYEDQIGIVTGWGTLSYGG 155
+ A+ + K +N V P +AG+ V G+ +
Sbjct: 84 ----------EERAIERGPKGFNFNDNVTPFKYAAGAKAGER-----IKVIGYP---HPY 125
Query: 156 PRSDVLMEVPIPVWRLTECRKQFSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQ 215
VL E PV + +S + G+SG P+L +
Sbjct: 126 KNKYVLYESTGPVMSVEGSSIVYSAHTE----------------SGNSGSPVL----NSN 165
Query: 216 WTIIGVVSWGIG 227
++G+
Sbjct: 166 NELVGIHFASDV 177
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 32.0 bits (71), Expect = 0.20
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 200 QGDSGGPLLL-QRPDKQWTIIGVVSWGIGCGKTPGVYVQVNK 240
GDSG PL + R +W +G + G K + K
Sbjct: 260 LGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKSWQEWNIYK 301
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta
helix, heme uptake, spate, hydrolase; 2.20A {Escherichia
coli} PDB: 3ak5_A
Length = 1048
Score = 30.8 bits (68), Expect = 0.54
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 175 RKQFSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLL-QRPDKQWTIIGVVSWGIGCGKTPG 233
S +FD L G GDSG PL +W ++GV++ G G G
Sbjct: 182 ISTSSGLVFDYKLNGAMPIYGE---AGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGRGN 238
Query: 234 VYVQVNK 240
+ +
Sbjct: 239 NWAVIPL 245
>1hpg_A Glutamic acid specific protease; serine protease,
hydrolase-hydrolase inhibitor complex; 1.50A
{Streptomyces griseus} SCOP: b.47.1.1
Length = 187
Score = 29.5 bits (66), Expect = 0.79
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 196 TDSC--QGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 234
T +C GDSGG +G+ S GC T G
Sbjct: 134 TTACSAGGDSGGAHFAGS-----VALGIHSGSSGCSGTAGS 169
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 29.0 bits (65), Expect = 1.0
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 19/81 (23%)
Query: 40 GVLINERWVLTAAHCIKQKIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVY 99
G +I + ++T H K + + + + ++D P
Sbjct: 27 GFVIGKNTIITNKHVSKDYKVGDRITAHPNG-----DKGNGGIYKIKSISDYP------- 74
Query: 100 PRFSEQNYENDIALVQLSKKA 120
+ DI+++ + ++A
Sbjct: 75 -------GDEDISVMNIEEQA 88
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 29.6 bits (65), Expect = 1.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 200 QGDSGGPLLL-QRPDKQWTIIGVVSWG 225
QGD+G L + K+W + G V
Sbjct: 205 QGDAGSALFVYDNQKKKWVVAGTVWGI 231
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus}
SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E
2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E
2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E
...
Length = 185
Score = 28.7 bits (64), Expect = 1.3
Identities = 38/192 (19%), Positives = 53/192 (27%), Gaps = 49/192 (25%)
Query: 44 NERWVLTAAHCIKQKIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMKVYPRFS 103
+ + LTA HC D A S LG S D ++
Sbjct: 24 STYYFLTAGHCT----DGATTWWANSARTTVLGTTSGSSFPNN---DY--GIVRYTNTTI 74
Query: 104 EQNYENDIALVQLSKKAQYNSFVRPVCLPQAGDFYEDQIGIVTGWG-TLSYGGPRSDVLM 162
++ + + A V G G VT T++YGG
Sbjct: 75 PKDGTVGGQDITSAANATVGM---AVTR--RGSTTGTHSGSVTALNATVNYGGGDV---- 125
Query: 163 EVPIPVWRLTECRKQFSQNIFDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVV 222
+ +N+CA GDSGGPL IG+
Sbjct: 126 ----------------VYGMIRTNVCAEP---------GDSGGPLYSGT-----RAIGLT 155
Query: 223 SWGIGCGKTPGV 234
S G G + G
Sbjct: 156 SGGSGNCSSGGT 167
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A
{Cellulomonas bogoriensis}
Length = 189
Score = 27.5 bits (61), Expect = 3.2
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 196 TDSC--QGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 234
T C GDSGG LL GV S G G +T G
Sbjct: 128 TTVCAEPGDSGGSLLAGN-----QAQGVTSGGSGNCRTGGT 163
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability,
electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}
Length = 188
Score = 27.6 bits (61), Expect = 3.4
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 183 FDSNLCAGGYKGGTDSCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 234
+ + + GDSGG + GV S G G +T G
Sbjct: 123 YPQGTVHSLTRTSVCAEPGDSGGSFISGT-----QAQGVTSGGSGNCRTGGT 169
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels,
thermophIle, kinetic stabilit thermostability, protein
folding; HET: 2AB; 1.44A {Thermobifida fusca}
Length = 186
Score = 27.5 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 198 SCQGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 234
+ GDSGGP L GV S G G ++ G+
Sbjct: 135 AEGGDSGGPWLTGS-----QAQGVTSGGTGDCRSGGI 166
>1z0w_A Putative protease LA homolog type; ATP-dependent protease,
catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A
{Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A
1z0g_A 1z0t_A 1z0v_A
Length = 207
Score = 26.8 bits (60), Expect = 5.7
Identities = 6/25 (24%), Positives = 8/25 (32%), Gaps = 6/25 (24%)
Query: 139 EDQIGIVTG--WGTLSYGGPRSDVL 161
++G V G G VL
Sbjct: 9 GYEVGRVNGLAV-IGESAG---IVL 29
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent,
catalytic DYAD, hydrolase; HET: MES; 1.90A
{Methanocaldococcus jannaschii} SCOP: d.14.1.10
Length = 187
Score = 26.7 bits (60), Expect = 6.7
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 139 EDQIGIVTG--WGTLSYGGPRSDVL 161
E ++G++ G L GG DV
Sbjct: 3 EPKVGVIYGLAV--LGAGGI-GDVT 24
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E
5sga_E 2sfa_A
Length = 181
Score = 26.4 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 196 TDSC--QGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPGV 234
T+ C GDSGG L T +G+ S G G +T G
Sbjct: 128 TNVCAQPGDSGGSLFAGS-----TALGLTSGGSGNCRTGGT 163
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 26.2 bits (58), Expect = 9.3
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 40 GVLINERWVLTAAHCIK--QKIDNALVLRRTSDLIVRLGEYDFSKVNETKVTDIPAAAMK 97
GV++ + ++T H K N + +S V D+ A +
Sbjct: 26 GVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDL--AIVH 83
Query: 98 V-YPRFSEQNYENDIALVQLSKKAQYNSFVRPVCLPQAGDFYEDQIGIVTG 147
V N+ +++ + + A+ + + P+ ++ TG
Sbjct: 84 VHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTK-YKMFESTG 133
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT
catalysis, protein folding, protein stability, packing
DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes}
SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A*
1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A*
2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A
1gbl_A ...
Length = 198
Score = 26.1 bits (57), Expect = 9.6
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 196 TDSC--QGDSGGPLLLQRPDKQWTIIGVVSWGIGCGKTPG 233
++C +GDSGG + GV+S G
Sbjct: 134 GNACMGRGDSGGSWI----TSAGQAQGVMSGGNVQSNGNN 169
>3syj_A Adhesion and penetration protein autotransporter; bacterial
aggregation and biofilm formation, SELF-associatin
autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Length = 1011
Score = 26.6 bits (57), Expect = 9.8
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 200 QGDSGGPLLL-QRPDKQWTIIGVVSWGIGCGKTPGVYVQVNK 240
+GDSG P+ + ++W I G++ G + V K
Sbjct: 215 KGDSGSPMFIYDAEKQKWLINGILREGNPFEGKENGFQLVRK 256
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5'
exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB:
3cm5_A 3cm6_A
Length = 308
Score = 26.5 bits (58), Expect = 10.0
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 16/83 (19%)
Query: 110 DIALVQLSKKAQYNSFVRPVCLPQAGDFYEDQIGIVTGWGTLSYGGPRSDVLMEVPIPVW 169
D+ ++ + +N +V+PV D GI ++ V
Sbjct: 50 DVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIP--QRSIDTADTFDVVY-------- 99
Query: 170 RLTECRKQFSQNIFDSNLCAGGY 192
+QF Q + L G +
Sbjct: 100 ------EQFQQWLITLGLEEGKF 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.442
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,927,640
Number of extensions: 225113
Number of successful extensions: 1240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 125
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)