BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8979
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0H|A Chain A, Crystal Structure Of The N-Terminal Domain Of Helicobacter
Pylori Caga Protein
Length = 916
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 15 LKERLHYELEILMAYQSK----NKMQAEAQRNRERKEL 48
L++R H E E+ +SK NKM+A+AQ N ++ E+
Sbjct: 623 LRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEI 660
>pdb|4DVY|P Chain P, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 876
Score = 26.6 bits (57), Expect = 5.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 15 LKERLHYELEILMAYQSK----NKMQAEAQRNRERKEL 48
L++R H E E+ +SK NKM+A+AQ N ++ E+
Sbjct: 623 LRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEI 660
>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|A Chain A, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1Q|B Chain B, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|A Chain A, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|E Chain E, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 170
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 2 IRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 34
+R+ E + + HH ++ LHYE L+I + + +NK
Sbjct: 104 LRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNK 139
>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 164
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 2 IRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 34
+R+ E + + HH ++ LHYE L+I + + +NK
Sbjct: 85 LRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNK 120
>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of
Human Dhh Without Calcium
pdb|2WFR|A Chain A, Crystal Structure Of The N-Terminal Signalling Domain Of
Human Dhh With Calcium
Length = 165
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 2 IRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 34
+R+ E + + HH ++ LHYE L+I + + +NK
Sbjct: 85 LRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNK 120
>pdb|4DVZ|A Chain A, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 569
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 15 LKERLHYELEILMAYQSK----NKMQAEAQRNRERKEL 48
L++R H E E+ +SK NKM+A+AQ N ++ E+
Sbjct: 363 LRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEI 400
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 2 IRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 34
+R+ E + + HH +E LHYE ++I + + +NK
Sbjct: 112 LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 2 IRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 34
+R+ E + + HH +E LHYE ++I + + +NK
Sbjct: 112 LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 169
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 2 IRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 34
+R+ E + + HH +E LHYE ++I + + +NK
Sbjct: 103 LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 138
>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 2 IRLDESQEVECHHLKERLHYE---LEILMAYQSKNK 34
+R+ E + + HH +E LHYE ++I + + +NK
Sbjct: 112 LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNK 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,496,008
Number of Sequences: 62578
Number of extensions: 57305
Number of successful extensions: 199
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 11
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)