Query psy8979
Match_columns 142
No_of_seqs 48 out of 50
Neff 3.4
Searched_HMMs 29240
Date Sat Aug 17 00:34:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5n_A Interferon-induced guan 83.6 21 0.0007 32.1 12.8 81 8-96 488-569 (592)
2 3b8o_A Lipopolysaccharide bios 53.6 77 0.0026 25.2 8.5 58 23-83 119-176 (265)
3 3oja_B Anopheles plasmodium-re 50.7 1.1E+02 0.0038 25.6 11.6 7 46-52 526-532 (597)
4 3oja_B Anopheles plasmodium-re 48.3 1.2E+02 0.0042 25.4 12.8 48 10-57 463-523 (597)
5 4e29_A Chimeric WZZB chain len 47.9 1.1E+02 0.0037 24.7 9.4 56 23-81 100-155 (248)
6 4e17_B Catenin alpha-1; four h 46.6 16 0.00055 22.7 2.7 21 9-32 18-38 (40)
7 3b8m_A Ferric enterobactin (en 45.0 1.2E+02 0.0041 24.4 9.3 58 23-83 134-191 (280)
8 2e7s_A RAB guanine nucleotide 41.8 51 0.0017 24.9 5.4 43 9-53 62-106 (135)
9 2eqb_B RAB guanine nucleotide 37.4 1.1E+02 0.0038 21.9 8.9 44 9-54 42-87 (97)
10 2ocy_A RAB guanine nucleotide 36.9 1.4E+02 0.0048 22.8 8.4 42 10-53 75-118 (154)
11 1lts_C Heat-labIle enterotoxin 35.8 20 0.00068 22.4 1.9 13 25-37 15-27 (41)
12 3oja_A Leucine-rich immune mol 33.9 2E+02 0.0068 23.7 13.4 42 55-96 418-465 (487)
13 4e18_B Catenin alpha-1; four h 32.7 40 0.0014 22.4 3.1 20 9-31 37-56 (59)
14 1jad_A PLC-beta, phospholipase 31.5 2.2E+02 0.0074 23.4 12.7 31 23-53 114-144 (251)
15 3lay_A Zinc resistance-associa 30.4 1.8E+02 0.0062 22.2 10.3 24 1-24 65-88 (175)
16 2v4h_A NF-kappa-B essential mo 29.9 1.6E+02 0.0056 21.5 10.6 64 10-85 24-93 (110)
17 1lti_C LT-I, heat labIle enter 28.6 30 0.001 22.2 1.9 13 25-37 18-30 (48)
18 1jad_A PLC-beta, phospholipase 24.7 2.9E+02 0.0099 22.6 9.2 84 5-95 118-211 (251)
19 3pmr_A Amyloid-like protein 1; 24.4 68 0.0023 26.0 3.7 44 6-50 51-94 (219)
20 2lf0_A Uncharacterized protein 24.3 2E+02 0.0068 21.5 6.0 26 36-61 36-61 (123)
21 3oeo_A Spheroplast protein Y; 22.9 38 0.0013 24.7 1.8 21 2-22 32-52 (138)
22 4abm_A Charged multivesicular 22.7 1.2E+02 0.004 20.5 4.2 30 17-46 9-38 (79)
23 3k66_A Beta-amyloid-like prote 22.2 2.4E+02 0.0081 23.2 6.6 44 6-50 39-89 (239)
24 1tii_C LT-IIB, heat labIle ent 20.8 52 0.0018 21.5 1.9 13 25-37 18-30 (53)
No 1
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=83.62 E-value=21 Score=32.07 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHH
Q psy8979 8 QEVECHHLKERLHYELEILMAYQSKNKMQAEAQRNRERKELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQER 87 (142)
Q Consensus 8 Qe~E~~~L~~qLqqElElL~aYQsK~k~q~eaQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~erir~L~eRq~r 87 (142)
+-++.++=++..++|.++|..=|.+....+++| .+..+++| +-|.+||++|...+..+-..-+..-+.-|+.
T Consensus 488 ~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~----~~~~~e~~----~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~ 559 (592)
T 1f5n_A 488 EIEVERVKAESAQASAKMLHEMQRKNEQMMEQK----ERSYQEHL----KQLTEKMENDRVQLLKEQERTLALKLQEQEQ 559 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888999999999999988888888 34555555 3577788888887776655555444444433
Q ss_pred HHH-Hhhhhh
Q psy8979 88 ELE-SFDQES 96 (142)
Q Consensus 88 Ele-~FD~es 96 (142)
=+. -|-.++
T Consensus 560 ~~~~g~~~~~ 569 (592)
T 1f5n_A 560 LLKEGFQKES 569 (592)
T ss_dssp HHHHTCHHHH
T ss_pred HHHHHHHHHH
Confidence 333 344444
No 2
>3b8o_A Lipopolysaccharide biosynthesis protein WZZE; bacterial polysaccharide CO-polymerase, inner MEM lipopolysaccharide biosynthesis, membrane; 2.40A {Escherichia coli} SCOP: d.58.60.1
Probab=53.55 E-value=77 Score=25.16 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy8979 23 LEILMAYQSKNKMQAEAQRNRERKELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHE 83 (142)
Q Consensus 23 lElL~aYQsK~k~q~eaQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~erir~L~e 83 (142)
.++|+.|=.-.-.++-.+-. .+|...|.+|...|.+++.-.....++.|..||..|.+
T Consensus 119 ~~lL~~YI~~v~~~~~~~l~---~~l~~~~~~r~~~l~~qi~~~~~~ak~~~~~~i~rl~~ 176 (265)
T 3b8o_A 119 NNLLRQYVAFASQRAASHLN---DELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQ 176 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788887766655544433 67788899999999999999999999999999988864
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.71 E-value=1.1e+02 Score=25.64 Aligned_cols=7 Identities=0% Similarity=0.012 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy8979 46 KELEDRV 52 (142)
Q Consensus 46 ~~LeeRV 52 (142)
+.+++.+
T Consensus 526 ~~~~~~~ 532 (597)
T 3oja_B 526 QARRTEA 532 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 3333333
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=48.28 E-value=1.2e+02 Score=25.40 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH
Q psy8979 10 VECHHLKERLHYELEILMAYQSKNKMQAE-------------AQRNRERKELEDRVSVRRA 57 (142)
Q Consensus 10 ~E~~~L~~qLqqElElL~aYQsK~k~q~e-------------aQheRE~~~LeeRVs~RRa 57 (142)
.+.+.|+..+.+....+...+.++....+ .+.+++.++++++......
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 523 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLR 523 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHH
Confidence 34555555555555555555555433222 4445556666666555433
No 5
>4e29_A Chimeric WZZB chain length determinant protein; regulation of LPS O-antigen chain length, inner membran membrane protein; 1.60A {Shigella flexneri} PDB: 4e2c_A 4e2h_A 3b8p_A
Probab=47.86 E-value=1.1e+02 Score=24.75 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHH
Q psy8979 23 LEILMAYQSKNKMQAEAQRNRERKELEDRVSVRRALLEQKMDMETQQFLGERQERIRLL 81 (142)
Q Consensus 23 lElL~aYQsK~k~q~eaQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~erir~L 81 (142)
.++|+.|=..+..++-.+ -..+|...|.+|..-|.+.+......++..|..||..|
T Consensus 100 q~lL~~YI~fv~~~v~~e---l~~~l~~~i~~r~~~l~~ql~~~~~~ak~qr~~rI~rL 155 (248)
T 4e29_A 100 QMKLAQYIQQVDDKVNQE---LERDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI 155 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888877776665544 45677889999999999999999999999999999888
No 6
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=46.64 E-value=16 Score=22.70 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 9 EVECHHLKERLHYELEILMAYQSK 32 (142)
Q Consensus 9 e~E~~~L~~qLqqElElL~aYQsK 32 (142)
-+||+++++-|| +||.-|...
T Consensus 18 v~eCnavrqALQ---dLlseY~~~ 38 (40)
T 4e17_B 18 VAECNAVRQALQ---DLLSEYMGN 38 (40)
T ss_dssp HHHHHHHHHHHH---HHHHHHHC-
T ss_pred HHHHHHHHHHHH---HHHHHHhcc
Confidence 479999999987 789998753
No 7
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=44.96 E-value=1.2e+02 Score=24.38 Aligned_cols=58 Identities=9% Similarity=0.187 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy8979 23 LEILMAYQSKNKMQAEAQRNRERKELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHE 83 (142)
Q Consensus 23 lElL~aYQsK~k~q~eaQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~erir~L~e 83 (142)
.++|+.|=.-+..++..+-. .+|...|.+|...|.+++.-+....++.|..||..|.+
T Consensus 134 ~~lL~~YI~fv~~~~~~~l~---~~l~~~i~~r~~~l~~qi~~~~~~ak~~~~~~I~rL~~ 191 (280)
T 3b8m_A 134 QTVLSGYIDYISALVVKESI---ENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNY 191 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888887776666554433 56778888999999999999999999999999998865
No 8
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.77 E-value=51 Score=24.90 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 9 EVECHHLKERLHYELEILMA--YQSKNKMQAEAQRNRERKELEDRVS 53 (142)
Q Consensus 9 e~E~~~L~~qLqqElElL~a--YQsK~k~q~eaQheRE~~~LeeRVs 53 (142)
..+...-+.++.+|||-|+| |..-++|-..+ .+++..+|.|+.
T Consensus 62 R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~a--r~~~~~~e~r~~ 106 (135)
T 2e7s_A 62 RTKAEEEADKLNKEVEDLTASLFDEANNLVADA--RMEKYAIEILNK 106 (135)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT--THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34455566788999999988 88889998887 556666666664
No 9
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.36 E-value=1.1e+02 Score=21.86 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 9 EVECHHLKERLHYELEILMA--YQSKNKMQAEAQRNRERKELEDRVSV 54 (142)
Q Consensus 9 e~E~~~L~~qLqqElElL~a--YQsK~k~q~eaQheRE~~~LeeRVs~ 54 (142)
..+.+.-+.++++|||-|+| |..-++|-..+ .+++..+|.|+..
T Consensus 42 R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a--r~e~~~~e~kn~~ 87 (97)
T 2eqb_B 42 RTKAEEEADKLNKEVEDLTASLFDEANNMVADA--RKEKYAIEILNKR 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 34455566788888888887 88888888888 4555566666543
No 10
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.94 E-value=1.4e+02 Score=22.82 Aligned_cols=42 Identities=26% Similarity=0.359 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 10 VECHHLKERLHYELEILMA--YQSKNKMQAEAQRNRERKELEDRVS 53 (142)
Q Consensus 10 ~E~~~L~~qLqqElElL~a--YQsK~k~q~eaQheRE~~~LeeRVs 53 (142)
.+...-+.++++|||-|+| |..-++|-..+ .+++..+|.|+.
T Consensus 75 ~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a--r~~~~~~e~r~~ 118 (154)
T 2ocy_A 75 TKAEEEADKLNKEVEDLTASLFDEANNMVADA--RKEKYAIEILNK 118 (154)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3445567889999999998 89999999888 555666666654
No 11
>1lts_C Heat-labIle enterotoxin, subunit A; 1.95A {Escherichia coli} SCOP: d.166.1.1 PDB: 1ltt_C* 1ltb_C
Probab=35.84 E-value=20 Score=22.43 Aligned_cols=13 Identities=54% Similarity=0.480 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy8979 25 ILMAYQSKNKMQA 37 (142)
Q Consensus 25 lL~aYQsK~k~q~ 37 (142)
-|..||||+|.|.
T Consensus 15 ~L~~fkk~vKRq~ 27 (41)
T 1lts_C 15 YLREYQSKVKRQI 27 (41)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4788999999875
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.87 E-value=2e+02 Score=23.69 Aligned_cols=42 Identities=14% Similarity=-0.020 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHH---HHHhHHHHHHHHHHH---HHHHHHHHhhhhh
Q psy8979 55 RRALLEQKMDMETQ---QFLGERQERIRLLHE---RQERELESFDQES 96 (142)
Q Consensus 55 RRalLEqkieeE~~---~lq~eR~erir~L~e---Rq~rEle~FD~es 96 (142)
+...+.++++.|.. +..+.-+++|..|.+ |...+++.+|..-
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 418 RYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 33444444444443 233334456666666 7777788777654
No 13
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=32.70 E-value=40 Score=22.45 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 9 EVECHHLKERLHYELEILMAYQS 31 (142)
Q Consensus 9 e~E~~~L~~qLqqElElL~aYQs 31 (142)
-+||+++++-|| +||.-|..
T Consensus 37 v~eCnavrqALQ---dLlsEY~~ 56 (59)
T 4e18_B 37 VAECNAVRQALQ---DLLSEYMG 56 (59)
T ss_dssp HHHHHHHHHHHH---HHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHhc
Confidence 479999999987 78999975
No 14
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=31.50 E-value=2.2e+02 Score=23.39 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 23 LEILMAYQSKNKMQAEAQRNRERKELEDRVS 53 (142)
Q Consensus 23 lElL~aYQsK~k~q~eaQheRE~~~LeeRVs 53 (142)
.+|+...|.-+..++++.|+||.++|--+.+
T Consensus 114 k~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~ 144 (251)
T 1jad_A 114 TELAREKQIAELKALKESSESNIKDIKKKLE 144 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666677777777766655544
No 15
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=30.43 E-value=1.8e+02 Score=22.22 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=16.6
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHH
Q psy8979 1 MIRLDESQEVECHHLKERLHYELE 24 (142)
Q Consensus 1 ~~rLde~Qe~E~~~L~~qLqqElE 24 (142)
|+-||+.|.++.+.+.++-+.+..
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~~~~ 88 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYTQTS 88 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH
Confidence 467899999999888877666544
No 16
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.88 E-value=1.6e+02 Score=21.53 Aligned_cols=64 Identities=22% Similarity=0.403 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy8979 10 VECHHLKERLHYELEILMAYQSKNKMQAEAQRNRERKELEDRVSVRR------ALLEQKMDMETQQFLGERQERIRLLHE 83 (142)
Q Consensus 10 ~E~~~L~~qLqqElElL~aYQsK~k~q~eaQheRE~~~LeeRVs~RR------alLEqkieeE~~~lq~eR~erir~L~e 83 (142)
.|...|+.+|..==+.|.+=|..+ .+|.+.+.-++ .+|.+.++==...|..||++|-+.-.+
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~i------------delk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~e 91 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELI------------DKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEK 91 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhH
Confidence 367788888887777776633322 22222222222 368888888889999999988665544
Q ss_pred HH
Q psy8979 84 RQ 85 (142)
Q Consensus 84 Rq 85 (142)
.+
T Consensus 92 Ke 93 (110)
T 2v4h_A 92 KE 93 (110)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 17
>1lti_C LT-I, heat labIle enterotoxin type I; ADP-ribosyl transferase; HET: GAL A2G; 2.13A {Escherichia coli} SCOP: d.166.1.1 PDB: 1lta_C* 1htl_C* 1ltg_C
Probab=28.61 E-value=30 Score=22.25 Aligned_cols=13 Identities=54% Similarity=0.480 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy8979 25 ILMAYQSKNKMQA 37 (142)
Q Consensus 25 lL~aYQsK~k~q~ 37 (142)
-|..||||+|.|.
T Consensus 18 ~L~~fkk~vKRq~ 30 (48)
T 1lti_C 18 YLREYQSKVKRQI 30 (48)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4788999999875
No 18
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=24.66 E-value=2.9e+02 Score=22.62 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHH
Q psy8979 5 DESQEVECHHLKERLHYELEILMAYQSKNKMQAE----------AQRNRERKELEDRVSVRRALLEQKMDMETQQFLGER 74 (142)
Q Consensus 5 de~Qe~E~~~L~~qLqqElElL~aYQsK~k~q~e----------aQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR 74 (142)
.++|.++..+|+.....|..-|++=|.|..+..= +-.+|+.+++... .+ ++.-++..++.---
T Consensus 118 ~e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e~i~e~~~ktK~K~e~Er~~rEin~s------~i-ke~veerkrl~~kQ 190 (251)
T 1jad_A 118 REKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNS------HI-QEVVQTIKLLTEKT 190 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHH
Confidence 5789999999999999999999999987766532 2223444443322 22 22333444444433
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q psy8979 75 QERIRLLHERQERELESFDQE 95 (142)
Q Consensus 75 ~erir~L~eRq~rEle~FD~e 95 (142)
..+...|..+|..-++.|..+
T Consensus 191 ~k~qEkL~~~h~e~le~l~~e 211 (251)
T 1jad_A 191 ARYQQKLEEKQAENLRAIQEK 211 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666333
No 19
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=24.38 E-value=68 Score=26.00 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 6 ESQEVECHHLKERLHYELEILMAYQSKNKMQAEAQRNRERKELED 50 (142)
Q Consensus 6 e~Qe~E~~~L~~qLqqElElL~aYQsK~k~q~eaQheRE~~~Lee 50 (142)
+|+++|.++....=.-...|-..||+++.. +|.+..-|++.|++
T Consensus 51 EW~eae~q~k~lpkadkk~m~~rFQ~~v~a-LE~E~~~ErqqL~e 94 (219)
T 3pmr_A 51 EWAMADNQSKNLPKADRQALNEHFQSILQT-LEEQVSGERQRLVE 94 (219)
T ss_dssp HHHHHHHTTTTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHH-HhhhhHHHHHHHHH
Confidence 678877766443333345667778877753 66666667777754
No 20
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.35 E-value=2e+02 Score=21.54 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 36 QAEAQRNRERKELEDRVSVRRALLEQ 61 (142)
Q Consensus 36 q~eaQheRE~~~LeeRVs~RRalLEq 61 (142)
.+=+|+.+|...|+-+|+.=+..-..
T Consensus 36 ~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 36 DKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776666544443333
No 21
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=22.93 E-value=38 Score=24.73 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=16.3
Q ss_pred CcchhhHHHHHHHHHHHHHHH
Q psy8979 2 IRLDESQEVECHHLKERLHYE 22 (142)
Q Consensus 2 ~rLde~Qe~E~~~L~~qLqqE 22 (142)
|.||+.|..+.+.|...-..+
T Consensus 32 L~LT~eQ~~qir~i~~~~r~~ 52 (138)
T 3oeo_A 32 LNLTDAQKQQIREIMKGQRDQ 52 (138)
T ss_dssp SCCCTTHHHHHHHHHHHHSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 679999999999887665443
No 22
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=22.74 E-value=1.2e+02 Score=20.49 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 17 ERLHYELEILMAYQSKNKMQAEAQRNRERK 46 (142)
Q Consensus 17 ~qLqqElElL~aYQsK~k~q~eaQheRE~~ 46 (142)
.+|..-.++|..||+++-.+++.+...=++
T Consensus 9 ~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~ 38 (79)
T 4abm_A 9 QRLRDTEEMLSKKQEFLEKKIEQELTAAKK 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777899999999988887765554443
No 23
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=22.18 E-value=2.4e+02 Score=23.16 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 6 ESQEVECHHLKERLHY-------ELEILMAYQSKNKMQAEAQRNRERKELED 50 (142)
Q Consensus 6 e~Qe~E~~~L~~qLqq-------ElElL~aYQsK~k~q~eaQheRE~~~Lee 50 (142)
+|+++|-+.-...--- ..+|-..||.++.. +|.+..-|++.|++
T Consensus 39 EW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~s-LEqE~a~ErqqL~e 89 (239)
T 3k66_A 39 EWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSS-LEEEHKRMRKEIEA 89 (239)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHH
Confidence 7999998877665533 36788889988864 77777888888864
No 24
>1tii_C LT-IIB, heat labIle enterotoxin type IIB; ADP-ribosyl transferase, ADP-ribosylation, ganglioside receptor; 2.25A {Escherichia coli} SCOP: d.166.1.1
Probab=20.77 E-value=52 Score=21.54 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy8979 25 ILMAYQSKNKMQA 37 (142)
Q Consensus 25 lL~aYQsK~k~q~ 37 (142)
-|..||+++|.+.
T Consensus 18 dL~~fkk~vKR~~ 30 (53)
T 1tii_C 18 DLADFKKYIKRKF 30 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4788999999875
Done!