Query psy8979
Match_columns 142
No_of_seqs 48 out of 50
Neff 3.4
Searched_HMMs 13730
Date Sat Aug 17 00:34:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8979.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8979hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b8ma1 d.58.60.1 (A:64-330) E 57.8 32 0.0024 25.4 9.3 58 23-83 122-179 (267)
2 d3b8oa1 d.58.60.1 (A:55-319) L 52.5 39 0.0029 25.1 8.6 58 23-83 119-176 (265)
3 d3b8pa1 d.58.60.1 (A:54-292) C 24.5 1.2E+02 0.0087 21.9 8.5 58 23-83 92-149 (239)
4 d2e50a1 d.305.1.1 (A:1-222) Pr 24.2 85 0.0062 22.6 6.1 40 15-55 24-63 (222)
5 d1rw6a_ a.47.4.1 (A:) CAPPD, a 14.8 1.1E+02 0.0079 22.4 4.8 43 6-49 39-81 (192)
6 d2f66c1 a.2.17.3 (C:142-206) V 13.1 65 0.0047 20.2 2.6 19 13-31 7-25 (65)
7 d1gs9a_ a.24.1.1 (A:) Apolipop 11.2 2E+02 0.015 18.5 7.9 52 42-93 84-135 (144)
8 d1fgja_ a.138.1.3 (A:) Hydroxy 10.2 1.1E+02 0.0081 23.7 3.7 22 32-53 478-499 (499)
9 d2ca5a1 a.2.20.1 (A:20-78) Mxi 9.5 1.7E+02 0.013 17.7 3.7 22 13-34 5-36 (59)
10 d2ayua1 d.305.1.1 (A:70-370) N 6.9 4.4E+02 0.032 19.4 7.6 47 32-78 24-70 (301)
No 1
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=57.82 E-value=32 Score=25.37 Aligned_cols=58 Identities=9% Similarity=0.192 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy8979 23 LEILMAYQSKNKMQAEAQRNRERKELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHE 83 (142)
Q Consensus 23 lElL~aYQsK~k~q~eaQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~erir~L~e 83 (142)
.++|+.|-..+-.++-.+ -..++...|++|..-|.+++.-.....++.|..||..|.+
T Consensus 122 ~~lL~~YI~~v~~~v~~~---l~~~~~~~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~ 179 (267)
T d3b8ma1 122 QTVLSGYIDYISALVVKE---SIENVRNKLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNY 179 (267)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999987776665444 3456778899999999999999999999999999988865
No 2
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=52.48 E-value=39 Score=25.06 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy8979 23 LEILMAYQSKNKMQAEAQRNRERKELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHE 83 (142)
Q Consensus 23 lElL~aYQsK~k~q~eaQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~erir~L~e 83 (142)
.++|+.|=.-+-.++-.+ -..+|...|.+|..-|++++.......+..|..||..|.+
T Consensus 119 ~~lL~~YI~~v~~~~~~~---l~~~l~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~ 176 (265)
T d3b8oa1 119 NNLLRQYVAFASQRAASH---LNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQ 176 (265)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888877666655544 4567888999999999999999999999999999998874
No 3
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=24.46 E-value=1.2e+02 Score=21.90 Aligned_cols=58 Identities=14% Similarity=0.271 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHH
Q psy8979 23 LEILMAYQSKNKMQAEAQRNRERKELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHE 83 (142)
Q Consensus 23 lElL~aYQsK~k~q~eaQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~erir~L~e 83 (142)
.++|+.|=.-+..++- +.-..++...|.+|...|.+++.-.....++.+..||..|.+
T Consensus 92 ~~lL~~YI~fv~~~~~---~~l~~~i~~~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~ 149 (239)
T d3b8pa1 92 QRRLAEYIQQVDEEVA---KELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEE 149 (239)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888777666653 344567888999999999999999999999999999988865
No 4
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.21 E-value=85 Score=22.60 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 15 LKERLHYELEILMAYQSKNKMQAEAQRNRERKELEDRVSVR 55 (142)
Q Consensus 15 L~~qLqqElElL~aYQsK~k~q~eaQheRE~~~LeeRVs~R 55 (142)
+....+.=++.|.+.|.++. .++++-.+|.-.|+.+...+
T Consensus 24 ~~~~~~~~i~~L~~iQ~e~~-~l~~e~~~e~~~le~k~~~~ 63 (222)
T d2e50a1 24 SEKEQQEAIEHIDEVQNEID-RLNEQASEEILKVEQKYNKL 63 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33344455667777776554 34556666776666665433
No 5
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.82 E-value=1.1e+02 Score=22.38 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8979 6 ESQEVECHHLKERLHYELEILMAYQSKNKMQAEAQRNRERKELE 49 (142)
Q Consensus 6 e~Qe~E~~~L~~qLqqElElL~aYQsK~k~q~eaQheRE~~~Le 49 (142)
+|+++|-+.-...---.-.|..-||+..- -+|.+...|++.|.
T Consensus 39 eW~eaE~~~~~l~k~d~K~~~~rFq~~v~-~LE~e~~~erq~L~ 81 (192)
T d1rw6a_ 39 EWEEAERQAKNLPKADKKAVIQHFQEKVE-SLEQEAANERQQLV 81 (192)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccChHHHHHHHHHHHH-HHhhhhHHHHhhHH
Confidence 56666554443333334445555555443 34555555555443
No 6
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.14 E-value=65 Score=20.18 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8979 13 HHLKERLHYELEILMAYQS 31 (142)
Q Consensus 13 ~~L~~qLqqElElL~aYQs 31 (142)
-+||.+|++++--|.+=-+
T Consensus 7 ~~Lk~kL~~~~~~ld~~s~ 25 (65)
T d2f66c1 7 IALKKKLEQNTKKLDEESS 25 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788999998887776444
No 7
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=11.15 E-value=2e+02 Score=18.53 Aligned_cols=52 Identities=13% Similarity=0.262 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q psy8979 42 NRERKELEDRVSVRRALLEQKMDMETQQFLGERQERIRLLHERQERELESFD 93 (142)
Q Consensus 42 eRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~erir~L~eRq~rEle~FD 93 (142)
.....++..|+.=...-|-.++......++..=..-+..|..+....++.|-
T Consensus 84 ~~~lee~r~kl~~~~eel~~~~~~~~ee~r~~l~p~~eel~~~l~~~~eel~ 135 (144)
T d1gs9a_ 84 GADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQ 135 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444555666666666666553
No 8
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO {Nitrosomonas europaea [TaxId: 915]}
Probab=10.22 E-value=1.1e+02 Score=23.73 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8979 32 KNKMQAEAQRNRERKELEDRVS 53 (142)
Q Consensus 32 K~k~q~eaQheRE~~~LeeRVs 53 (142)
-.+|+.++..-|+..++|.||+
T Consensus 478 ~~~i~~~a~~~~~~~~~~~~~~ 499 (499)
T d1fgja_ 478 YVEIQDEYTKMQELSALQARVN 499 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 3678888888899999999884
No 9
>d2ca5a1 a.2.20.1 (A:20-78) MxiH needle protein {Shigella flexneri [TaxId: 623]}
Probab=9.49 E-value=1.7e+02 Score=17.74 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHH----------HHHHHHHHHH
Q psy8979 13 HHLKERLHYELE----------ILMAYQSKNK 34 (142)
Q Consensus 13 ~~L~~qLqqElE----------lL~aYQsK~k 34 (142)
+.|..+|++-|+ +|-.||+|.-
T Consensus 5 ~~l~~~l~~Al~~L~~~pSdp~~LA~YQ~kls 36 (59)
T d2ca5a1 5 QTLQGELTLALDKLAKNPSNPQLLAEYQSKLS 36 (59)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456677777776 4567998863
No 10
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.93 E-value=4.4e+02 Score=19.36 Aligned_cols=47 Identities=23% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHH
Q psy8979 32 KNKMQAEAQRNRERKELEDRVSVRRALLEQKMDMETQQFLGERQERI 78 (142)
Q Consensus 32 K~k~q~eaQheRE~~~LeeRVs~RRalLEqkieeE~~~lq~eR~eri 78 (142)
+.+..+-..+..+..+|+.+..-...-||+|-.....-+-..|.+-|
T Consensus 24 ~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II 70 (301)
T d2ayua1 24 KEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRII 70 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Done!