RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8979
         (142 letters)



>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1
          {Escherichia coli [TaxId: 562]}
          Length = 344

 Score = 27.0 bits (59), Expect = 0.77
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)

Query: 15 LKERLHYELEILMAYQSKNKMQAEAQR-NRERKELEDRVSVRRALLEQKMDMETQQFLGE 73
          L ER H E++ L+        Q   +  +RE  +L D         + + D+ET Q + +
Sbjct: 2  LHER-HEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLD 60

Query: 74 RQERIRLLHERQERELESFDQESNRM 99
            E   +  +      E  +Q   ++
Sbjct: 61 DPEMREMAQDELREAKEKSEQLEQQL 86


>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 128

 Score = 25.0 bits (54), Expect = 2.8
 Identities = 6/31 (19%), Positives = 15/31 (48%)

Query: 72  GERQERIRLLHERQERELESFDQESNRMGFS 102
           G+R+  + LL    E+++     +   +G +
Sbjct: 7   GDRRSTLHLLQGGDEKKVNLVLGDGRSLGLT 37


>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2)
           {Escherichia coli [TaxId: 562]}
          Length = 362

 Score = 24.2 bits (52), Expect = 8.0
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 6/110 (5%)

Query: 15  LKERLHYELEILMAYQSKNKMQAEAQR-NRERKELEDRV----SVRRALLEQKMDMETQQ 69
            KERL  E+   +           AQ   +ER  LE  V     +++ L +    +E   
Sbjct: 27  KKERLE-EVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAV 85

Query: 70  FLGERQERIRLLHERQERELESFDQESNRMGFSALAIAEASKESYPDMDG 119
              + +     + E    E +    E  RM       A+   +      G
Sbjct: 86  EADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGG 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 480,340
Number of extensions: 19623
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 22
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.5 bits)