Query psy8980
Match_columns 355
No_of_seqs 362 out of 1901
Neff 6.5
Searched_HMMs 29240
Date Sat Aug 17 00:36:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b72_B Protein (PBX1); homeodo 99.7 5.1E-19 1.7E-23 139.8 4.7 70 228-297 2-71 (87)
2 1puf_B PRE-B-cell leukemia tra 99.7 5.5E-19 1.9E-23 135.3 4.6 70 228-297 2-71 (73)
3 2dmn_A Homeobox protein TGIF2L 99.7 3.4E-18 1.2E-22 134.3 7.2 65 226-290 6-70 (83)
4 1du6_A PBX1, homeobox protein 99.7 1.9E-18 6.3E-23 128.9 3.0 63 226-288 2-64 (64)
5 1x2n_A Homeobox protein pknox1 99.7 5.6E-18 1.9E-22 129.6 5.1 65 226-290 6-70 (73)
6 3d1n_I POU domain, class 6, tr 99.7 2.5E-17 8.6E-22 143.1 7.2 126 159-287 3-150 (151)
7 3k2a_A Homeobox protein MEIS2; 99.7 2.3E-17 7.9E-22 124.4 3.6 61 231-291 2-62 (67)
8 1k61_A Mating-type protein alp 99.7 3.6E-17 1.2E-21 120.3 4.4 59 230-288 1-59 (60)
9 1le8_B Mating-type protein alp 99.6 5.6E-17 1.9E-21 127.3 4.4 62 228-289 3-64 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 7E-17 2.4E-21 127.7 4.6 62 226-287 26-87 (87)
11 2hdd_A Protein (engrailed home 99.6 4.6E-17 1.6E-21 120.3 2.9 59 226-287 2-60 (61)
12 1au7_A Protein PIT-1, GHF-1; c 99.6 1.2E-17 4.1E-22 144.5 -0.5 60 226-288 86-145 (146)
13 2xsd_C POU domain, class 3, tr 99.6 1.1E-17 3.6E-22 147.6 -0.9 62 226-290 98-159 (164)
14 2h1k_A IPF-1, pancreatic and d 99.6 7.8E-17 2.7E-21 119.8 3.2 60 227-289 3-62 (63)
15 1bw5_A ISL-1HD, insulin gene e 99.6 5.6E-17 1.9E-21 121.6 2.4 61 226-289 2-62 (66)
16 1ig7_A Homeotic protein MSX-1; 99.6 9.5E-17 3.2E-21 117.2 3.5 57 228-287 1-57 (58)
17 2cue_A Paired box protein PAX6 99.6 1.9E-16 6.4E-21 123.3 5.4 63 226-291 6-68 (80)
18 2dms_A Homeobox protein OTX2; 99.6 2E-16 7E-21 123.0 5.6 63 225-290 5-67 (80)
19 2cra_A Homeobox protein HOX-B1 99.6 6.8E-17 2.3E-21 122.6 2.8 61 226-289 6-66 (70)
20 2dmu_A Homeobox protein goosec 99.6 9.3E-17 3.2E-21 121.8 3.5 61 226-289 6-66 (70)
21 2dmq_A LIM/homeobox protein LH 99.6 1.9E-16 6.6E-21 123.0 5.3 61 226-289 6-66 (80)
22 2djn_A Homeobox protein DLX-5; 99.6 1.2E-16 4.1E-21 121.2 3.9 61 226-289 6-66 (70)
23 2ecc_A Homeobox and leucine zi 99.6 1.1E-16 3.6E-21 123.5 3.3 61 229-292 5-65 (76)
24 1zq3_P PRD-4, homeotic bicoid 99.6 1.2E-16 4.1E-21 120.6 3.5 62 227-291 2-63 (68)
25 2k40_A Homeobox expressed in E 99.6 1.5E-16 5.1E-21 119.6 4.0 61 227-290 1-61 (67)
26 2vi6_A Homeobox protein nanog; 99.6 8.4E-17 2.9E-21 119.2 2.5 59 227-288 3-61 (62)
27 3l1p_A POU domain, class 5, tr 99.6 6.2E-17 2.1E-21 141.4 1.7 60 226-288 95-154 (155)
28 2l7z_A Homeobox protein HOX-A1 99.6 1.2E-16 4.2E-21 122.3 3.2 64 225-291 5-68 (73)
29 2dmt_A Homeobox protein BARH-l 99.6 1.1E-16 3.6E-21 124.7 2.7 62 225-289 15-76 (80)
30 1jgg_A Segmentation protein EV 99.6 1.3E-16 4.5E-21 117.4 3.1 58 228-288 2-59 (60)
31 2da2_A Alpha-fetoprotein enhan 99.6 1.2E-16 4.2E-21 121.1 2.9 62 225-289 5-66 (70)
32 1yz8_P Pituitary homeobox 2; D 99.6 1.1E-16 3.7E-21 120.8 2.5 63 226-291 2-64 (68)
33 2e1o_A Homeobox protein PRH; D 99.6 1.8E-16 6E-21 120.3 3.6 61 226-289 6-66 (70)
34 2da1_A Alpha-fetoprotein enhan 99.6 8.2E-17 2.8E-21 122.0 1.8 63 225-290 5-67 (70)
35 1akh_A Protein (mating-type pr 99.6 9.5E-17 3.3E-21 118.4 2.0 58 226-286 4-61 (61)
36 2da4_A Hypothetical protein DK 99.6 1.5E-16 5.3E-21 123.7 2.9 62 225-289 6-71 (80)
37 1nk2_P Homeobox protein VND; h 99.6 2.4E-16 8.4E-21 121.8 4.0 62 226-290 8-69 (77)
38 3rkq_A Homeobox protein NKX-2. 99.6 3.2E-16 1.1E-20 114.0 4.3 57 227-286 2-58 (58)
39 1ahd_P Antennapedia protein mu 99.6 1.3E-16 4.4E-21 120.5 2.2 61 227-290 2-62 (68)
40 1fjl_A Paired protein; DNA-bin 99.6 2.3E-16 8E-21 123.0 3.7 62 225-289 16-77 (81)
41 2da3_A Alpha-fetoprotein enhan 99.6 1.3E-16 4.3E-21 123.9 1.9 62 225-289 15-76 (80)
42 1ftt_A TTF-1 HD, thyroid trans 99.6 2.6E-16 8.8E-21 118.8 3.4 61 227-290 2-62 (68)
43 2lk2_A Homeobox protein TGIF1; 99.6 2.9E-16 1E-20 124.4 3.9 60 231-290 9-68 (89)
44 3a01_A Homeodomain-containing 99.6 2.2E-16 7.7E-21 126.4 3.3 66 225-293 15-80 (93)
45 1puf_A HOX-1.7, homeobox prote 99.6 3.2E-16 1.1E-20 121.1 3.8 62 226-290 12-73 (77)
46 2kt0_A Nanog, homeobox protein 99.6 2.1E-16 7.1E-21 124.0 2.4 63 225-290 20-82 (84)
47 1uhs_A HOP, homeodomain only p 99.6 5E-16 1.7E-20 118.4 4.2 59 228-289 2-61 (72)
48 1wh5_A ZF-HD homeobox family p 99.6 2.5E-16 8.6E-21 122.8 2.2 62 226-287 16-78 (80)
49 2r5y_A Homeotic protein sex co 99.6 5.8E-16 2E-20 122.6 4.3 61 226-289 27-87 (88)
50 1b8i_A Ultrabithorax, protein 99.6 3.5E-16 1.2E-20 122.1 2.8 61 226-289 19-79 (81)
51 3a02_A Homeobox protein arista 99.6 3.2E-16 1.1E-20 115.3 2.3 57 230-289 2-58 (60)
52 2hi3_A Homeodomain-only protei 99.6 7.2E-16 2.5E-20 117.9 4.4 59 228-289 3-62 (73)
53 2ecb_A Zinc fingers and homeob 99.6 9.2E-16 3.1E-20 121.9 4.4 58 231-291 15-72 (89)
54 3a03_A T-cell leukemia homeobo 99.6 5.3E-16 1.8E-20 112.7 2.6 54 232-288 2-55 (56)
55 2m0c_A Homeobox protein arista 99.6 6.1E-16 2.1E-20 118.5 2.8 63 225-290 7-69 (75)
56 2cuf_A FLJ21616 protein; homeo 99.6 1.3E-15 4.6E-20 122.3 4.7 63 225-290 5-82 (95)
57 2ly9_A Zinc fingers and homeob 99.6 7.7E-16 2.6E-20 117.9 3.0 62 225-289 4-65 (74)
58 1b72_A Protein (homeobox prote 99.6 1.4E-15 4.6E-20 122.7 4.5 62 226-290 33-94 (97)
59 1e3o_C Octamer-binding transcr 99.6 4.7E-15 1.6E-19 130.0 7.3 61 225-288 99-159 (160)
60 2dn0_A Zinc fingers and homeob 99.6 6.7E-16 2.3E-20 119.0 1.7 61 226-289 7-67 (76)
61 2da5_A Zinc fingers and homeob 99.5 1.2E-15 4.3E-20 117.3 2.9 60 228-290 8-67 (75)
62 2da6_A Hepatocyte nuclear fact 99.5 5.7E-15 2E-19 119.8 6.8 62 226-290 5-87 (102)
63 1wh7_A ZF-HD homeobox family p 99.5 1E-15 3.5E-20 119.4 1.5 62 225-287 15-78 (80)
64 3nar_A ZHX1, zinc fingers and 99.5 2.7E-15 9.3E-20 120.7 3.5 65 226-293 24-88 (96)
65 3nau_A Zinc fingers and homeob 99.5 4.6E-15 1.6E-19 110.9 2.6 53 234-289 11-63 (66)
66 1wi3_A DNA-binding protein SAT 99.5 8.8E-15 3E-19 109.5 2.7 59 226-287 6-65 (71)
67 2dmp_A Zinc fingers and homeob 99.5 1.7E-14 5.7E-19 114.7 4.2 59 230-291 16-74 (89)
68 2e19_A Transcription factor 8; 99.5 1.9E-14 6.6E-19 107.4 3.4 56 230-288 6-61 (64)
69 1lfb_A Liver transcription fac 99.5 1.7E-14 5.7E-19 116.9 3.2 62 226-290 8-90 (99)
70 2l9r_A Homeobox protein NKX-3. 99.4 1.9E-14 6.5E-19 109.1 1.8 55 232-289 9-63 (69)
71 2d5v_A Hepatocyte nuclear fact 99.4 2.1E-14 7.1E-19 126.2 2.1 62 225-289 95-156 (164)
72 2cqx_A LAG1 longevity assuranc 99.4 1.9E-14 6.6E-19 109.9 1.2 62 226-289 7-68 (72)
73 1x2m_A LAG1 longevity assuranc 99.4 1.3E-13 4.3E-18 102.9 2.5 51 237-289 10-60 (64)
74 1ic8_A Hepatocyte nuclear fact 99.2 9.5E-13 3.3E-17 118.7 -0.8 60 225-287 113-193 (194)
75 2da7_A Zinc finger homeobox pr 99.2 4.8E-12 1.6E-16 95.3 1.7 46 236-284 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.1 8.2E-12 2.8E-16 114.1 2.2 58 225-285 140-218 (221)
77 1mh3_A Maltose binding-A1 home 99.0 2.3E-11 7.8E-16 119.3 -0.4 55 229-286 367-421 (421)
78 2nzz_A Penetratin conjugated G 98.3 8.8E-08 3E-12 63.4 -0.1 20 272-291 1-20 (37)
79 2ys9_A Homeobox and leucine zi 93.6 0.014 4.8E-07 43.6 0.2 42 235-279 14-55 (70)
80 3hug_A RNA polymerase sigma fa 51.0 5.7 0.00019 30.0 1.4 49 233-289 37-85 (92)
81 1p4w_A RCSB; solution structur 45.7 11 0.00039 29.2 2.5 53 228-289 29-81 (99)
82 1hlv_A CENP-B, major centromer 44.3 12 0.0004 29.8 2.4 49 229-283 3-51 (131)
83 2o8x_A Probable RNA polymerase 41.8 7.5 0.00026 27.1 0.8 50 232-289 14-63 (70)
84 2glo_A Brinker CG9653-PA; prot 41.8 6.7 0.00023 27.1 0.5 45 231-279 3-47 (59)
85 3lph_A Protein REV; helix-loop 36.7 17 0.00058 26.9 2.0 37 240-293 19-55 (72)
86 3mzy_A RNA polymerase sigma-H 36.3 25 0.00084 28.1 3.2 49 233-290 109-157 (164)
87 3c57_A Two component transcrip 35.3 19 0.00066 27.3 2.2 49 232-289 26-74 (95)
88 1je8_A Nitrate/nitrite respons 31.9 26 0.00089 25.7 2.4 50 231-289 19-68 (82)
89 1x3u_A Transcriptional regulat 31.2 36 0.0012 24.1 3.1 47 234-289 17-63 (79)
90 2elh_A CG11849-PA, LD40883P; s 31.0 42 0.0014 24.9 3.5 43 228-278 17-59 (87)
91 2rnj_A Response regulator prot 30.0 24 0.00082 26.3 2.0 49 232-289 28-76 (91)
92 1fse_A GERE; helix-turn-helix 27.6 31 0.0011 24.0 2.1 51 230-289 8-58 (74)
93 1tty_A Sigma-A, RNA polymerase 27.1 18 0.00061 26.9 0.7 54 233-290 18-71 (87)
94 1s7o_A Hypothetical UPF0122 pr 26.4 27 0.00094 27.6 1.8 50 233-290 22-71 (113)
95 1jko_C HIN recombinase, DNA-in 26.1 19 0.00064 23.0 0.6 23 260-282 24-46 (52)
96 1ku3_A Sigma factor SIGA; heli 25.9 21 0.00073 25.3 1.0 51 232-286 9-59 (73)
97 2p7v_B Sigma-70, RNA polymeras 25.5 25 0.00085 24.6 1.3 53 233-289 5-57 (68)
98 1tc3_C Protein (TC3 transposas 25.4 32 0.0011 21.4 1.7 39 233-279 5-43 (51)
99 2x7l_M HIV REV; nuclear export 24.4 72 0.0025 25.6 3.8 38 240-294 16-53 (115)
100 1xsv_A Hypothetical UPF0122 pr 24.4 27 0.00093 27.5 1.4 51 233-291 25-75 (113)
101 1iuf_A Centromere ABP1 protein 23.5 71 0.0024 26.0 3.9 49 228-281 6-60 (144)
102 2q1z_A RPOE, ECF SIGE; ECF sig 23.3 23 0.00078 29.3 0.8 47 234-288 136-182 (184)
103 1rp3_A RNA polymerase sigma fa 23.2 27 0.00092 29.9 1.2 49 233-289 187-235 (239)
104 2jn6_A Protein CGL2762, transp 22.8 53 0.0018 24.5 2.7 42 231-279 3-45 (97)
105 1or7_A Sigma-24, RNA polymeras 22.0 27 0.00092 29.0 1.0 49 233-289 140-188 (194)
No 1
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.75 E-value=5.1e-19 Score=139.85 Aligned_cols=70 Identities=93% Similarity=1.382 Sum_probs=64.7
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhhhhHHHh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGKAQEEAN 297 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~~~~e~~ 297 (355)
||+|+.|+..++.+|+.||..|..++||+..++..||..+||++.||+|||||+|+|+|+...+...++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~~~~ 71 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEAN 71 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccccccc
Confidence 6789999999999999999999999999999999999999999999999999999999999877665544
No 2
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.75 E-value=5.5e-19 Score=135.26 Aligned_cols=70 Identities=93% Similarity=1.382 Sum_probs=65.7
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhhhhHHHh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGKAQEEAN 297 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~~~~e~~ 297 (355)
||+|+.|+..++.+|+.||..|..+|||+..++..||..+||++.||+|||+|+|+|+|+...+..++++
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~~e~~ 71 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEAN 71 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTTTHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccccccc
Confidence 6789999999999999999999999999999999999999999999999999999999999877766654
No 3
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=134.29 Aligned_cols=65 Identities=34% Similarity=0.645 Sum_probs=61.4
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
+++++|+.|+..++.+|+.||..|..+|||+..+|..||..+||++.||+|||||+|+|+|+...
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999998763
No 4
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.9e-18 Score=128.91 Aligned_cols=63 Identities=81% Similarity=1.253 Sum_probs=59.8
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
..+++|+.|+..++.+|+.||.+|..++||+..++..||..+||++.||++||+|+|+|+||+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 357889999999999999999999999999999999999999999999999999999999873
No 5
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=5.6e-18 Score=129.59 Aligned_cols=65 Identities=32% Similarity=0.673 Sum_probs=61.4
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
+.+++|+.|+..++.+|+.||..|..+|||+..++..||..+||++.||+|||+|+|+|+|+...
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 45788999999999999999999999999999999999999999999999999999999999763
No 6
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=143.15 Aligned_cols=126 Identities=24% Similarity=0.394 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC---------CCCCHHHHHHHHHH------HHhhhhHHHHHhhhhhHH-------H
Q psy8980 159 LEKYEQACNEFTTHVMNLLREQSRT---------RPITPKEIERMVQI------IHKKFSSIQMQLKQSTCE-------A 216 (355)
Q Consensus 159 Leky~~~~~~f~~~~i~ll~~qs~~---------~pls~~~~~~~~~~------~~~~f~~~~~~lk~~~~~-------~ 216 (355)
++..+++++.|..+.|.+..+|..+ ...+..-|.++... +...-..+..++.+.... .
T Consensus 3 ~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~ 82 (151)
T 3d1n_I 3 MEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNL 82 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcccc
Confidence 4455667999999999988776422 23344444333210 000001122233221111 0
Q ss_pred HHhhhhhhcccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhh
Q psy8980 217 VMILRSRFLDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKK 287 (355)
Q Consensus 217 ~~~l~~~~~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk 287 (355)
.........++||+|+.|+..|+..|+.+| ..++||+..++..||..+||++.||+|||||||+|+||
T Consensus 83 ~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 83 MEFVGGEPSKKRKRRTSFTPQAIEALNAYF---EKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp HHHHCSSCCCCCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cccCCCCCCCCCCCCcccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 111122234567889999999999999999 88999999999999999999999999999999999987
No 7
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=2.3e-17 Score=124.43 Aligned_cols=61 Identities=39% Similarity=0.703 Sum_probs=53.9
Q ss_pred CcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhh
Q psy8980 231 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 231 R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~ 291 (355)
.++|+++++.+|+.||.+|..+|||+..+|..||..+||+..||+|||+|+|+|+|+....
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3589999999999999999999999999999999999999999999999999999998643
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=3.6e-17 Score=120.35 Aligned_cols=59 Identities=27% Similarity=0.567 Sum_probs=55.8
Q ss_pred CCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 230 KRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 230 ~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
+|+.|+..|+.+|+.||..|..++||+..++..||..+||++.||++||+|+|+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46899999999999999888889999999999999999999999999999999999874
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=5.6e-17 Score=127.26 Aligned_cols=62 Identities=24% Similarity=0.509 Sum_probs=57.1
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+++|++|+..|+.+|+.||..|..++||+..++..||..+||++.||+|||||+|+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 34566799999999999999999999999999999999999999999999999999999975
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=7e-17 Score=127.67 Aligned_cols=62 Identities=26% Similarity=0.538 Sum_probs=58.1
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKK 287 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk 287 (355)
+++++|+.|+..|+.+|+.||..|..++||+..+|..||..+||++.||++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 45677899999999999999988888999999999999999999999999999999999873
No 11
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.64 E-value=4.6e-17 Score=120.25 Aligned_cols=59 Identities=31% Similarity=0.527 Sum_probs=53.0
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKK 287 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk 287 (355)
+.|++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREF---NENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 357899999999999999999 88999999999999999999999999999999999987
No 12
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.64 E-value=1.2e-17 Score=144.55 Aligned_cols=60 Identities=28% Similarity=0.429 Sum_probs=55.2
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
++||+|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+||.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHF---GEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 467789999999999999999 889999999999999999999999999999999999985
No 13
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.64 E-value=1.1e-17 Score=147.55 Aligned_cols=62 Identities=27% Similarity=0.396 Sum_probs=52.3
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
++||+|+.|+..|+..|+.+| ..++||+..+|..||..+||++.||+|||||||+|+||...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHF---LKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 467789999999999999999 88999999999999999999999999999999999999763
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.63 E-value=7.8e-17 Score=119.82 Aligned_cols=60 Identities=32% Similarity=0.523 Sum_probs=55.9
Q ss_pred cCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 227 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 227 ~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEF---LFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 47889999999999999999 8899999999999999999999999999999999999864
No 15
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.63 E-value=5.6e-17 Score=121.61 Aligned_cols=61 Identities=26% Similarity=0.443 Sum_probs=58.0
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+.+++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||+|+|+|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCY---AANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 467899999999999999999 7899999999999999999999999999999999999865
No 16
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=9.5e-17 Score=117.21 Aligned_cols=57 Identities=28% Similarity=0.473 Sum_probs=54.9
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKK 287 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk 287 (355)
|++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||+|+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKF---RQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 4688999999999999999 88999999999999999999999999999999999987
No 17
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.9e-16 Score=123.31 Aligned_cols=63 Identities=27% Similarity=0.561 Sum_probs=59.4
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~ 291 (355)
+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+..+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEF---ERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 467899999999999999999 999999999999999999999999999999999999998743
No 18
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2e-16 Score=123.02 Aligned_cols=63 Identities=30% Similarity=0.565 Sum_probs=59.1
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.+.||+|+.|+..|+.+|+.+| ..++||+..++..||..++|++.||++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALF---AKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 3567899999999999999999 88999999999999999999999999999999999999763
No 19
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=6.8e-17 Score=122.60 Aligned_cols=61 Identities=23% Similarity=0.481 Sum_probs=58.1
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+.|++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREY---AANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 567899999999999999999 8899999999999999999999999999999999999875
No 20
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.3e-17 Score=121.78 Aligned_cols=61 Identities=31% Similarity=0.631 Sum_probs=58.0
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLF---QETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 457899999999999999999 8899999999999999999999999999999999999875
No 21
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=123.04 Aligned_cols=61 Identities=26% Similarity=0.577 Sum_probs=58.2
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+.||+|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYF---AINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 467899999999999999999 8899999999999999999999999999999999999976
No 22
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=121.23 Aligned_cols=61 Identities=31% Similarity=0.429 Sum_probs=58.2
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+.|++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+||..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRF---QKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHH---cCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 467899999999999999999 9999999999999999999999999999999999999865
No 23
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.1e-16 Score=123.52 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=56.7
Q ss_pred CCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhhh
Q psy8980 229 RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGKA 292 (355)
Q Consensus 229 r~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~~ 292 (355)
.+|++|+.+|+.+|+.+| ..++||+..+|.+||..|||++.||+|||||+|+|+|+..-+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F---~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFF---LQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHH---HHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 467789999999999999 8899999999999999999999999999999999999987543
No 24
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-16 Score=120.62 Aligned_cols=62 Identities=29% Similarity=0.461 Sum_probs=58.7
Q ss_pred cCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhh
Q psy8980 227 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 227 ~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~ 291 (355)
.|++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||+|||+|+|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHF---LQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46789999999999999999 999999999999999999999999999999999999998744
No 25
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=119.62 Aligned_cols=61 Identities=33% Similarity=0.627 Sum_probs=57.8
Q ss_pred cCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 227 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 227 ~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
+|++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||+|+|+|+|+...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVF---RVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 36789999999999999999 99999999999999999999999999999999999998764
No 26
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.62 E-value=8.4e-17 Score=119.19 Aligned_cols=59 Identities=29% Similarity=0.470 Sum_probs=52.7
Q ss_pred cCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 227 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 227 ~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
.+++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||+|||+|+|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRF---QKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 46789999999999999999 889999999999999999999999999999999999985
No 27
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.62 E-value=6.2e-17 Score=141.35 Aligned_cols=60 Identities=27% Similarity=0.470 Sum_probs=56.8
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
++||+|+.|+..|+..|+.+| ..++||+..++..||..+||++.||+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMF---LKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTT---TTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 567789999999999999999 999999999999999999999999999999999999984
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.62 E-value=1.2e-16 Score=122.26 Aligned_cols=64 Identities=28% Similarity=0.554 Sum_probs=59.9
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~ 291 (355)
.+.+++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREY---ATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHH---HHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---hhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcc
Confidence 4568899999999999999999 889999999999999999999999999999999999997643
No 29
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=124.70 Aligned_cols=62 Identities=27% Similarity=0.447 Sum_probs=58.4
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+||..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRF---EKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3567889999999999999999 8899999999999999999999999999999999999875
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.62 E-value=1.3e-16 Score=117.38 Aligned_cols=58 Identities=31% Similarity=0.539 Sum_probs=55.1
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
|++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||+|+|+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEF---YKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999 889999999999999999999999999999999999985
No 31
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-16 Score=121.08 Aligned_cols=62 Identities=26% Similarity=0.518 Sum_probs=58.4
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+||..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFF---DANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3567899999999999999999 8899999999999999999999999999999999999875
No 32
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.61 E-value=1.1e-16 Score=120.84 Aligned_cols=63 Identities=33% Similarity=0.573 Sum_probs=59.0
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~ 291 (355)
+.+++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||+|+|+|+....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATF---QRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHH---TTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 357899999999999999999 999999999999999999999999999999999999997643
No 33
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=1.8e-16 Score=120.33 Aligned_cols=61 Identities=23% Similarity=0.460 Sum_probs=57.9
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKF---ETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 457789999999999999999 8899999999999999999999999999999999999875
No 34
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=8.2e-17 Score=122.02 Aligned_cols=63 Identities=25% Similarity=0.456 Sum_probs=58.9
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||+|+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYF---DINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHH---HHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 3567899999999999999999 88999999999999999999999999999999999999763
No 35
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.61 E-value=9.5e-17 Score=118.38 Aligned_cols=58 Identities=40% Similarity=0.578 Sum_probs=48.0
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYK 286 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~K 286 (355)
+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||+|+|+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f---~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHH---HhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 457789999999999999999 7889999999999999999999999999999999975
No 36
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=123.71 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=57.8
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCC----CCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSN----PYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~----pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.+++|+.|+..|+.+|+.+| ..+ +||+..++..||..+||++.||+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYW---DNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHH---TTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 3567889999999999999999 778 9999999999999999999999999999999999854
No 37
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.61 E-value=2.4e-16 Score=121.77 Aligned_cols=62 Identities=31% Similarity=0.456 Sum_probs=58.2
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
++++.|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRF---RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 457789999999999999999 88999999999999999999999999999999999998763
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=114.04 Aligned_cols=57 Identities=32% Similarity=0.470 Sum_probs=54.4
Q ss_pred cCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhh
Q psy8980 227 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYK 286 (355)
Q Consensus 227 ~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~K 286 (355)
+++.|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||+|+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRF---KQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 36789999999999999999 9999999999999999999999999999999999975
No 39
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.61 E-value=1.3e-16 Score=120.52 Aligned_cols=61 Identities=26% Similarity=0.495 Sum_probs=57.7
Q ss_pred cCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 227 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 227 ~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
+|+.|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHH---HHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 36789999999999999999 88999999999999999999999999999999999999763
No 40
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.61 E-value=2.3e-16 Score=122.98 Aligned_cols=62 Identities=34% Similarity=0.583 Sum_probs=58.0
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAF---ERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3567889999999999999999 8899999999999999999999999999999999999976
No 41
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-16 Score=123.92 Aligned_cols=62 Identities=24% Similarity=0.426 Sum_probs=58.2
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.+|+|+.|+.+|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+||..
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~f---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 15 QRDKRLRTTITPEQLEILYQKY---LLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCTTCCSSCCTTTHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3467889999999999999999 8899999999999999999999999999999999999865
No 42
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.60 E-value=2.6e-16 Score=118.81 Aligned_cols=61 Identities=31% Similarity=0.464 Sum_probs=57.9
Q ss_pred cCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 227 ARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 227 ~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
+|++|+.|+..|+..|+.+| ..++||+..++..||..+||++.+|++||+|||+|+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRF---KQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHH---HHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 46789999999999999999 88999999999999999999999999999999999999764
No 43
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.60 E-value=2.9e-16 Score=124.36 Aligned_cols=60 Identities=33% Similarity=0.597 Sum_probs=56.4
Q ss_pred CcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 231 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 231 R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.--|+++++.+|+.||++|..+|||+.++|.+||..+||++.||+|||+|+|+|.|+...
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 346899999999999999999999999999999999999999999999999999998763
No 44
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.60 E-value=2.2e-16 Score=126.45 Aligned_cols=66 Identities=23% Similarity=0.495 Sum_probs=60.2
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGKAQ 293 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~~~ 293 (355)
.+.|++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||+|||||||+|+|+......
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRF---HKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCcCCCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHH
Confidence 3567889999999999999999 88999999999999999999999999999999999999875543
No 45
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.60 E-value=3.2e-16 Score=121.08 Aligned_cols=62 Identities=35% Similarity=0.528 Sum_probs=58.5
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+..+
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEF---LFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHH---hccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 457789999999999999999 88999999999999999999999999999999999999764
No 46
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.59 E-value=2.1e-16 Score=123.96 Aligned_cols=63 Identities=29% Similarity=0.468 Sum_probs=58.8
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+||..+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRF---QRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHH---HHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999 88999999999999999999999999999999999998753
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=5e-16 Score=118.42 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=56.1
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCC-CCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLS-NPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~-~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.++|+.|+..|+.+|+.+| .. ++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F---~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNF---NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHH---HSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHH---HccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 4688999999999999999 75 99999999999999999999999999999999999976
No 48
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.59 E-value=2.5e-16 Score=122.83 Aligned_cols=62 Identities=11% Similarity=0.184 Sum_probs=55.6
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhh-cCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYS-HLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKK 287 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~-H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk 287 (355)
++||+|+.|+.+|+..|+.+|.. |..++||+..+|.+||..+||++.||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 56788999999999999999921 222999999999999999999999999999999999876
No 49
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.59 E-value=5.8e-16 Score=122.64 Aligned_cols=61 Identities=26% Similarity=0.532 Sum_probs=55.4
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+.+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+||..
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEF---HFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 457889999999999999999 9999999999999999999999999999999999999864
No 50
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.58 E-value=3.5e-16 Score=122.11 Aligned_cols=61 Identities=30% Similarity=0.527 Sum_probs=54.5
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
..||+|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+||..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEF---HTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 457789999999999999999 8899999999999999999999999999999999999975
No 51
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.58 E-value=3.2e-16 Score=115.29 Aligned_cols=57 Identities=30% Similarity=0.517 Sum_probs=50.2
Q ss_pred CCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 230 KRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 230 ~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAF---SRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 57899999999999999 8899999999999999999999999999999999999865
No 52
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=7.2e-16 Score=117.92 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=56.2
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcC-CCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHL-SNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~-~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+++|+.|+..|+.+|+.+| . .++||+..++..||..+||++.||++||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F---~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNF---NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHH---HHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999 8 599999999999999999999999999999999999976
No 53
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=9.2e-16 Score=121.92 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=53.9
Q ss_pred CcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhh
Q psy8980 231 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 231 R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~ 291 (355)
...|+.+|+..|+.+| ..++||+..+|.+||..+||++.||+|||||||+|+|+...+
T Consensus 15 ~k~~t~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASF---LNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred hccCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHH
Confidence 3489999999999999 889999999999999999999999999999999999986643
No 54
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.57 E-value=5.3e-16 Score=112.67 Aligned_cols=54 Identities=28% Similarity=0.563 Sum_probs=50.7
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 232 RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 232 ~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+||.
T Consensus 2 T~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRF---LRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH---HhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999 889999999999999999999999999999999999985
No 55
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=6.1e-16 Score=118.50 Aligned_cols=63 Identities=32% Similarity=0.553 Sum_probs=58.7
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.++++.|+.|+..++.+|+.+| ..++||+..++..||..+||++.||++||+|+|+|+|+...
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVF---QKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3557789999999999999999 88999999999999999999999999999999999998753
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=1.3e-15 Score=122.27 Aligned_cols=63 Identities=35% Similarity=0.683 Sum_probs=59.1
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcC---------------CCcccccccccchhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCN---------------ITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~g---------------Lt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.||.|+.|+..|+.+|+.+| ..++||+..+|..||..++ |++.+|++||||||+|+|+..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F---~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYF---NENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999 7899999999999999999 999999999999999999976
Q ss_pred h
Q psy8980 290 G 290 (355)
Q Consensus 290 ~ 290 (355)
.
T Consensus 82 ~ 82 (95)
T 2cuf_A 82 N 82 (95)
T ss_dssp H
T ss_pred h
Confidence 3
No 57
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-16 Score=117.87 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=58.7
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.++.|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+||..
T Consensus 4 ~~~~~~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 4 PDSFGIRAKKTKEQLAELKVSY---LKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCCTTCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCCcCCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 4567899999999999999999 8899999999999999999999999999999999999876
No 58
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=1.4e-15 Score=122.69 Aligned_cols=62 Identities=29% Similarity=0.431 Sum_probs=56.0
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
+.+++|+.|+..|+..|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEF---HFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 457789999999999999999 99999999999999999999999999999999999999763
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.55 E-value=4.7e-15 Score=130.04 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=54.6
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
.++||+|+.|+..|+..|+.+| ..++||+..+|..||..+||++.||++||||||+|+||.
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSF---MENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3567899999999999999999 889999999999999999999999999999999999985
No 60
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.7e-16 Score=119.02 Aligned_cols=61 Identities=20% Similarity=0.397 Sum_probs=57.5
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
+..+.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||+|||+|+||..
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F---~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSF---CRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHH---HHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 455678999999999999999 8899999999999999999999999999999999999976
No 61
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=117.29 Aligned_cols=60 Identities=20% Similarity=0.413 Sum_probs=56.1
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSF---AQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHH---hccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 3567789999999999999 88999999999999999999999999999999999999763
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=119.79 Aligned_cols=62 Identities=27% Similarity=0.469 Sum_probs=58.1
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHc---------------------CCCcccccccccchhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKC---------------------NITVSQVSNWFGNKRIR 284 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~---------------------gLt~~qV~~WFqNrR~R 284 (355)
++||.|+.|++.++.+|+.+| ..++||+..+|++||..| .|++.+|+|||||||+|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F---~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAY---DRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 467899999999999999999 999999999999999999 79999999999999999
Q ss_pred hhhhhh
Q psy8980 285 YKKNIG 290 (355)
Q Consensus 285 ~Kk~~~ 290 (355)
+|+..+
T Consensus 82 ~kr~~~ 87 (102)
T 2da6_A 82 EAFRQK 87 (102)
T ss_dssp HHHHHH
T ss_pred HHHhhH
Confidence 988763
No 63
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.54 E-value=1e-15 Score=119.41 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=54.6
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcC--CCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHL--SNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKK 287 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~--~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk 287 (355)
.++||+|+.|+.+|+..|+ .|..|. .++||+..+|.+||..++|++.||+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 3567889999999999999 683221 1999999999999999999999999999999999876
No 64
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.53 E-value=2.7e-15 Score=120.74 Aligned_cols=65 Identities=22% Similarity=0.412 Sum_probs=58.2
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGKAQ 293 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~~~ 293 (355)
..+++|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+||...+..
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~ 88 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAF---VRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWY 88 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCCCCccCCHHHHHHHHHHH---HHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHH
Confidence 456789999999999999999 88999999999999999999999999999999999999875543
No 65
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.50 E-value=4.6e-15 Score=110.91 Aligned_cols=53 Identities=23% Similarity=0.491 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 234 FSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 234 fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
-+++|+..|+..| ..++||+..++.+||..+||+..||++||||||.|+|+..
T Consensus 11 ~~~~Ql~~LE~~F---~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASF---LQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHH---HGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 4689999999999 9999999999999999999999999999999999999754
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=8.8e-15 Score=109.48 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=55.0
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCC-CCCCCHHHHHHHHHHcCCCcccccccccchhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLS-NPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKK 287 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~-~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk 287 (355)
++||.||.|+.+|+.+|+.+| .. ++||+.+.|+.||.++||++.+|++||||+|--.+.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f---~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFI---HDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHH---HHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 567899999999999999999 78 999999999999999999999999999999976554
No 67
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=114.66 Aligned_cols=59 Identities=17% Similarity=0.400 Sum_probs=54.3
Q ss_pred CCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhh
Q psy8980 230 KRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 230 ~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~ 291 (355)
++..|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...+
T Consensus 16 k~k~~t~~Ql~~Le~~F---~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSF---LKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred ccccCCHHHHHHHHHHH---ccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 34459999999999999 889999999999999999999999999999999999987744
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-14 Score=107.45 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=51.8
Q ss_pred CCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 230 KRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 230 ~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
.+..+.+.|+..|+.+| ..++||+..+|..||..+||++.||++||||||+|.++.
T Consensus 6 ~~~~p~~~Ql~~Le~~F---~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYY---ALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp SCCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCCccHHHHHHHHHHH---hcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 44567899999999999 999999999999999999999999999999999998763
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.46 E-value=1.7e-14 Score=116.88 Aligned_cols=62 Identities=27% Similarity=0.440 Sum_probs=53.9
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHH------------------cC---CCcccccccccchhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARK------------------CN---ITVSQVSNWFGNKRIR 284 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~------------------~g---Lt~~qV~~WFqNrR~R 284 (355)
+.||.|+.|+..|+.+|+.+| ..++||+..+|++||.. +| |++.+|++||||||++
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F---~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAY---ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -----CCCCCHHHHHHHHHHH---TTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 457889999999999999999 99999999999999999 88 9999999999999999
Q ss_pred hhhhhh
Q psy8980 285 YKKNIG 290 (355)
Q Consensus 285 ~Kk~~~ 290 (355)
.|+...
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 987663
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-14 Score=109.09 Aligned_cols=55 Identities=27% Similarity=0.431 Sum_probs=52.1
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 232 RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 232 ~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
..++..++..|+..| ..++||+..+|..||..+||++.||++||||||+|+||..
T Consensus 9 ~~~t~~ql~~LE~~F---~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKF---SHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 467899999999999 8999999999999999999999999999999999999875
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.43 E-value=2.1e-14 Score=126.18 Aligned_cols=62 Identities=26% Similarity=0.363 Sum_probs=54.6
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.||+|+.|+..|+..|+.+| ..++||+..+|..||..+||++.||+|||||||+|+|+..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F---~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIF---KENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 3467899999999999999999 7889999999999999999999999999999999999876
No 72
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.9e-14 Score=109.90 Aligned_cols=62 Identities=18% Similarity=0.346 Sum_probs=55.4
Q ss_pred ccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 226 DARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 226 ~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+.++++.++..|+..|+..|. ..++||+..++.+||..+||++.||++||||||+|+|+..
T Consensus 7 ~g~k~r~r~~~~ql~~LE~~F~--~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 7 GGIKDSPVNKVEPNDTLEKVFV--SVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCCSCSCSTTHHHHHHH--HTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH--hcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3456777888999999999994 4689999999999999999999999999999999999764
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=1.3e-13 Score=102.90 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 237 QASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 237 ~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.++..|+..|. ..++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 10 ~~~~~LE~~F~--~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 10 QPNAILEKVFT--AITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp CHHHHHHHHHH--TTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred hHHHHHHHHHH--HcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 47899999993 3589999999999999999999999999999999998754
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.21 E-value=9.5e-13 Score=118.71 Aligned_cols=60 Identities=32% Similarity=0.550 Sum_probs=53.3
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcC---------------------CCcccccccccchhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCN---------------------ITVSQVSNWFGNKRI 283 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~g---------------------Lt~~qV~~WFqNrR~ 283 (355)
.+.||.|+.|+..|+.+|+.+| ..++||+..+|++||..|+ |++.+|+|||||||+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F---~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAY---ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHH---HHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 4567899999999999999999 8899999999999999999 999999999999999
Q ss_pred hhhh
Q psy8980 284 RYKK 287 (355)
Q Consensus 284 R~Kk 287 (355)
|.|.
T Consensus 190 ~~k~ 193 (194)
T 1ic8_A 190 EEAF 193 (194)
T ss_dssp HCC-
T ss_pred hhhc
Confidence 9874
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.8e-12 Score=95.26 Aligned_cols=46 Identities=17% Similarity=0.432 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhh
Q psy8980 236 KQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIR 284 (355)
Q Consensus 236 ~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R 284 (355)
++++.+|+.+| ..|++|+.+++..||..+||++++|++||||+|++
T Consensus 14 k~ql~~Lk~yF---~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYY---AMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHH---HHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 67899999999 99999999999999999999999999999999974
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.15 E-value=8.2e-12 Score=114.12 Aligned_cols=58 Identities=33% Similarity=0.587 Sum_probs=52.9
Q ss_pred cccCCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcC---------------------CCcccccccccchhh
Q psy8980 225 LDARRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCN---------------------ITVSQVSNWFGNKRI 283 (355)
Q Consensus 225 ~~~rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~g---------------------Lt~~qV~~WFqNrR~ 283 (355)
.+.||.|+.|++.++.+|+.+| ..++||+..+|++||..|| ||+.+|+|||+|||+
T Consensus 140 ~k~RR~R~~ft~~ql~~Le~~F---~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 140 KKMRRNRFKWGPASQQILYQAY---DRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp --CCCCCCCCCHHHHHHHHHHH---HHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCCHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 4567889999999999999999 8899999999999999988 899999999999998
Q ss_pred hh
Q psy8980 284 RY 285 (355)
Q Consensus 284 R~ 285 (355)
+.
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 74
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.03 E-value=2.3e-11 Score=119.26 Aligned_cols=55 Identities=40% Similarity=0.549 Sum_probs=51.6
Q ss_pred CCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhh
Q psy8980 229 RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYK 286 (355)
Q Consensus 229 r~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~K 286 (355)
+.++.|+..++..|++.| ..++||+..+|.+||.++||+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f---~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 355689999999999999 8899999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.29 E-value=8.8e-08 Score=63.37 Aligned_cols=20 Identities=35% Similarity=0.816 Sum_probs=17.8
Q ss_pred ccccccccchhhhhhhhhhh
Q psy8980 272 SQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 272 ~qV~~WFqNrR~R~Kk~~~~ 291 (355)
+||+|||||||+|+||....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 58999999999999998744
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.56 E-value=0.014 Score=43.56 Aligned_cols=42 Identities=19% Similarity=0.405 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCccccccccc
Q psy8980 235 SKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFG 279 (355)
Q Consensus 235 s~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFq 279 (355)
++.-.++|++|| ..+....+++...|+.+++|+..||+.||-
T Consensus 14 ~p~~~e~L~~Yy---~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 14 PPPDIQPLERYW---AAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCCCHHHHHHH---HHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCcchHHHHHH---HHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 344568899999 677889999999999999999999999994
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=50.95 E-value=5.7 Score=29.96 Aligned_cols=49 Identities=10% Similarity=0.249 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.++..+..+|.-.|+ .. + .-.++|..+|++...|+++....|.|.|+..
T Consensus 37 ~L~~~~r~vl~l~~~--~g--~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYY--RG--W----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHT--SC--C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--cC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 467778888877552 21 1 2468899999999999999988888877765
No 81
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=45.70 E-value=11 Score=29.19 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=39.8
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
......|+..+..+|.-++ ... .-.++|..+|++...|+++..+-+.|..-..
T Consensus 29 ~~~~~~Lt~re~~Vl~l~~---~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 29 GYGDKRLSPKESEVLRLFA---EGF------LVTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp CCSSSSCCHHHHHHHHHHH---HTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CcccCCCCHHHHHHHHHHH---cCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 3445789999999997755 222 2378999999999999999887777765544
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=44.28 E-value=12 Score=29.79 Aligned_cols=49 Identities=31% Similarity=0.363 Sum_probs=36.1
Q ss_pred CCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhh
Q psy8980 229 RKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRI 283 (355)
Q Consensus 229 r~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~ 283 (355)
++|+.|+.++...+-.++ ..++..+. .++|+.+|++...|..|..+++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~---~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEV---EENPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHH---HHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHH---HHCCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 357789999987776665 23444442 36889999999999999876654
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=41.81 E-value=7.5 Score=27.10 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 232 RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 232 ~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
..++..+..++...|. .. + .-.++|..+|++...|+.|....|.+.++..
T Consensus 14 ~~L~~~~r~il~l~~~--~g--~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQL--LG--L----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHT--SC--C----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHH--cC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 3578888888877652 21 2 2457899999999999999887777776654
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=41.79 E-value=6.7 Score=27.11 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=29.9
Q ss_pred CcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCccccccccc
Q psy8980 231 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFG 279 (355)
Q Consensus 231 R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFq 279 (355)
|+.|+.+.......++. . .........++|..+|++...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~---~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYR---N-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHH---H-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHH---c-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 45788888766655441 1 122111256899999999999999964
No 85
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=36.65 E-value=17 Score=26.90 Aligned_cols=37 Identities=27% Similarity=0.524 Sum_probs=22.8
Q ss_pred HHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhhhh
Q psy8980 240 EILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGKAQ 293 (355)
Q Consensus 240 ~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~~~ 293 (355)
.+++-.| +.||||+.+-... |+ .|||.||+.......
T Consensus 19 RiIkiLy---QSNP~P~p~GTrq-aR-------------RNRRRRWR~RQrQI~ 55 (72)
T 3lph_A 19 RLIKFLY---QSNPPPNPEGTRQ-AR-------------RNRRRRWRERQRQIH 55 (72)
T ss_dssp HHHHHHH---HTCCCCCCCSCHH-HH-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHH---ccCCCCCCCCchH-HH-------------HHHHHHHHHHHHHHH
Confidence 3444445 7899998653222 11 389999988765443
No 86
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=36.34 E-value=25 Score=28.12 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.++..+..++. .|. ..+ .-.++|..+|++...|+++....|.+.|+...
T Consensus 109 ~L~~~~r~v~~-~~~----~g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLI----RGY----SYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHT----TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHH----cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888 441 222 24678999999999999999888888777653
No 87
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=35.26 E-value=19 Score=27.28 Aligned_cols=49 Identities=10% Similarity=0.122 Sum_probs=37.9
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 232 RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 232 ~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
..++..+..+|.-++ .... -.++|..+|++...|+++..+.+.|.+...
T Consensus 26 ~~Lt~~e~~vl~l~~---~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 26 SGLTDQERTLLGLLS---EGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp -CCCHHHHHHHHHHH---TTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCHHHHHHHHHHH---cCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 468888999988765 3222 368999999999999999888888877654
No 88
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.91 E-value=26 Score=25.74 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=38.4
Q ss_pred CcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 231 RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 231 R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
-..++..+..+|.-++ .. + .-.++|..+|++...|+++..+.+.|.+...
T Consensus 19 ~~~Lt~~e~~vl~l~~---~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 19 VNQLTPRERDILKLIA---QG--L----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GGGSCHHHHHHHHHHT---TT--C----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred HccCCHHHHHHHHHHH---cC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 3468888999988754 22 2 3468899999999999999888887776654
No 89
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.22 E-value=36 Score=24.13 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 234 FSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 234 fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
++..+..+|.-++ .. + .-.++|..+|++...|+.+..+.+.|.+...
T Consensus 17 L~~~e~~vl~l~~---~g--~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAVV---AG--L----PNKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHHT---TT--C----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHH---cC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5666777776654 22 2 2358999999999999999988888877654
No 90
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=31.00 E-value=42 Score=24.86 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccc
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWF 278 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WF 278 (355)
++.+..|+.++.......+. . .. ...++|+.+|++...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~---~-g~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIH---D-GE----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHH---H-TC----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH---C-CC----CHHHHHHHHCcCHHHHHHHH
Confidence 34567889888655444441 1 11 24578999999999999996
No 91
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=30.01 E-value=24 Score=26.32 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=37.5
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 232 RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 232 ~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
..++..+..+|.-++ .... -.++|..+|++...|+++..+.+.|.+...
T Consensus 28 ~~Lt~~e~~vl~l~~---~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 76 (91)
T 2rnj_A 28 EMLTEREMEILLLIA---KGYS------NQEIASASHITIKTVKTHVSNILSKLEVQD 76 (91)
T ss_dssp GGCCSHHHHHHHHHH---TTCC------TTHHHHHHTCCHHHHHHHHHHHHHHTTCCS
T ss_pred hcCCHHHHHHHHHHH---cCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 467888888887755 3222 247899999999999999988888877654
No 92
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.57 E-value=31 Score=24.04 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=38.4
Q ss_pred CCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 230 KRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 230 ~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
....++..+..+|..++ . .+ .-.++|..+|++...|+.+..+-+.|.+...
T Consensus 8 ~~~~L~~~e~~il~~~~---~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 8 SKPLLTKREREVFELLV---Q--DK----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCCHHHHHHHHHHT---T--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHHH---c--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 34578999999997754 2 22 2457899999999999999887777766544
No 93
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.07 E-value=18 Score=26.90 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.++..+..+|...|+-..... ..-.++|..+|++...|+.|....+.|.|+...
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~----~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~ 71 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP----KTLEEVGQYFNVTRERIRQIEVKALRKLRHPSR 71 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBS
T ss_pred hCCHHHHHHHHHHHccCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467788888877762000011 124578999999999999999888888877653
No 94
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=26.43 E-value=27 Score=27.61 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhh
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIG 290 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~ 290 (355)
.+++.+..++.-.|. ... .-.++|..+|++...|+.|....|.+.++...
T Consensus 22 ~L~~~~r~vl~l~y~--~g~------s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYYA--DDY------SLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHHH--TCC------CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--cCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 477888888877642 222 24688999999999999999988888877643
No 95
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=26.12 E-value=19 Score=23.02 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCcccccccccchh
Q psy8980 260 KEELARKCNITVSQVSNWFGNKR 282 (355)
Q Consensus 260 r~~LA~~~gLt~~qV~~WFqNrR 282 (355)
..++|+.+|++...|..|+....
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHcc
Confidence 46789999999999999986443
No 96
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=25.87 E-value=21 Score=25.33 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=36.5
Q ss_pred cCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhh
Q psy8980 232 RNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYK 286 (355)
Q Consensus 232 ~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~K 286 (355)
..+++.+..+|...|+-.....+ .-.++|..+|++...|+.|....+.+.+
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35788888998877720000121 2358899999999999999888887777
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=25.48 E-value=25 Score=24.58 Aligned_cols=53 Identities=11% Similarity=0.254 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.+++.+..+|...|.-.....+ .-.++|..+|++...|+.+....+.|.++..
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4788888888776610001222 2357899999999999999888887777654
No 98
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.42 E-value=32 Score=21.38 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCccccccccc
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFG 279 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFq 279 (355)
.++..+...+...+ .. .+ ...++|+.+|++...|..|..
T Consensus 5 ~l~~~~~~~i~~~~---~~-g~----s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 5 ALSDTERAQLDVMK---LL-NV----SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CCCHHHHHHHHHHH---HT-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---Hc-CC----CHHHHHHHHCcCHHHHHHHHh
Confidence 56676664444444 11 12 255789999999999999974
No 99
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=24.38 E-value=72 Score=25.64 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=23.2
Q ss_pred HHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhhhhH
Q psy8980 240 EILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGKAQE 294 (355)
Q Consensus 240 ~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~~~~ 294 (355)
++++-.| +.||||+.+-.. | ==.|||+|||........
T Consensus 16 RiIkiLy---QSNPyP~peGTR-----------q---aRRNRRRRWR~RQrQI~~ 53 (115)
T 2x7l_M 16 RLIKFLY---QSNPPPNPEGTR-----------Q---ARRNRRRRWRERQRQIHS 53 (115)
T ss_dssp HHHHHHH---HSSCCCCCCCCT-----------T---THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---ccCCCCCCCCch-----------h---hhHhHHHHHHHHHHHHHH
Confidence 3444445 789999864211 1 114899999887755443
No 100
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.37 E-value=27 Score=27.51 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhhhh
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNIGK 291 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~~~ 291 (355)
.++..+..++.-+|. . .+ .-.++|..+|++...|+++....|.+.++....
T Consensus 25 ~L~~~~r~vl~l~~~--~--g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYL--E--DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHT--S--CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--c--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888877652 1 12 246789999999999999998888888776543
No 101
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=23.53 E-value=71 Score=26.00 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=35.2
Q ss_pred CCCCcCCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH----Hc--CCCcccccccccch
Q psy8980 228 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELAR----KC--NITVSQVSNWFGNK 281 (355)
Q Consensus 228 rr~R~~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~----~~--gLt~~qV~~WFqNr 281 (355)
+++|..+|-++...+..++. ..++-.+.. .||. .+ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~--~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFF--QLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHH--SSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHH--HhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 56888999999888887761 345555543 4555 77 78888999997553
No 102
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=23.30 E-value=23 Score=29.27 Aligned_cols=47 Identities=11% Similarity=0.215 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhh
Q psy8980 234 FSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKN 288 (355)
Q Consensus 234 fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~ 288 (355)
++..+..++.-.|. ....| .++|..+|++...|++|....|.+.|+.
T Consensus 136 L~~~~r~vl~l~~~--~g~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFF--GDLTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHH--SCCSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 67777777776543 33332 3689999999999999998888877764
No 103
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.16 E-value=27 Score=29.93 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.++..+..+|.-.|. . .+ .-.++|..+|++...|+.+....|.|.|+..
T Consensus 187 ~L~~~~r~vl~l~~~---~-g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFY---E-EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHT---S-CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh---c-CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 578888999887762 1 22 2457899999999999999988888887754
No 104
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.79 E-value=53 Score=24.50 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=28.5
Q ss_pred CcCCCHHHHHHHHHHhhhcCCC-CCCCHHHHHHHHHHcCCCccccccccc
Q psy8980 231 RRNFSKQASEILNEYFYSHLSN-PYPSEEAKEELARKCNITVSQVSNWFG 279 (355)
Q Consensus 231 R~~fs~~q~~~L~~~F~~H~~~-pyPs~~er~~LA~~~gLt~~qV~~WFq 279 (355)
|+.|+.++....-..+ ... .+ ....+|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~---~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALY---ENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHH---TTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---HHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3568887765544444 221 11 256899999999999999964
No 105
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=22.02 E-value=27 Score=29.01 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHcCCCcccccccccchhhhhhhhh
Q psy8980 233 NFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCNITVSQVSNWFGNKRIRYKKNI 289 (355)
Q Consensus 233 ~fs~~q~~~L~~~F~~H~~~pyPs~~er~~LA~~~gLt~~qV~~WFqNrR~R~Kk~~ 289 (355)
.++..+..++.-.|. . .++ -.++|..+|++...|+++....|.+.|+..
T Consensus 140 ~L~~~~r~vl~l~~~--~--g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLREL--D--GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHT--T--CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHH--c--CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 366777788866552 2 222 357899999999999999988888887765
Done!