BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8981
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DE0|X Chain X, Crystal Structure Of Human Alpha 1,6-fucosyltransferase,
Fut8
Length = 526
Score = 164 bits (416), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 73/120 (60%), Positives = 91/120 (75%)
Query: 8 RSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGY 67
RS++ L L D DWR KE+ DL++LVQRR+ YLQNP DC A+KLVC +NKGCGY
Sbjct: 99 RSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGY 158
Query: 68 GCQLHHVVYCFIVAYATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNSGWPGK 127
GCQLHHVVYCF++AY T+RTLIL+S+ W Y+ GGWE VF+PVS+TCT G+S W G+
Sbjct: 159 GCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGE 218
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 85 RRTLILDSKEWSYSRGGWEEVFQPV 109
+ TLI+ ++EW + GW EVF P+
Sbjct: 138 KETLIMAAREWLL-KDGWHEVFPPI 161
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 19 ARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNK 63
A D +DD +LKE L D R ++ N C+T R+ V EL K
Sbjct: 8 AWDKYDDKQLKEVFALGD---RFKNFISN---CKTERECVTELIK 46
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 78 FIVAYATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSN 121
FI Y + ++ +EWS ++ +E+ Q + EGV N
Sbjct: 80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123
>pdb|3RF2|A Chain A, Crystal Structure Of 30s Ribosomal Protein S8 From
Aquifex Aeolicus
Length = 168
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 12 HVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTAR--KLVCELNKGCGYGC 69
+LD LK DW + + ++ E + P+ + R K + E NKG Y
Sbjct: 35 RILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNPKMKRYLKQLEEYNKGTQYPI 94
Query: 70 QLH 72
+++
Sbjct: 95 KIY 97
>pdb|3IPW|A Chain A, Crystal Structure Of Hydrolase Tatd Family Protein From
Entamoeba Histolytica
Length = 325
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 37 LVQRRLEYLQNPPDCRTARKLVCELNKGCGY-GCQLHHVVYCF 78
++ ++ YL CR + +C+LNK GY GC+ VV+CF
Sbjct: 161 ILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCK--GVVHCF 201
>pdb|2HDF|A Chain A, Crystal Structure Of The Colicin I Receptor Cir From
E.Coli
Length = 639
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 82 YATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNS 122
++ R L+ ++ + +GGW F+ S SP+ SNS
Sbjct: 370 WSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNS 410
>pdb|2HDI|A Chain A, Crystal Structure Of The Colicin I Receptor Cir From
E.Coli In Complex With Receptor Binding Domain Of
Colicin Ia
Length = 639
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 82 YATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNS 122
++ R L+ ++ + +GGW F+ S SP+ SNS
Sbjct: 370 WSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNS 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,482,474
Number of Sequences: 62578
Number of extensions: 173129
Number of successful extensions: 333
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 8
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)