Query psy8981
Match_columns 134
No_of_seqs 104 out of 106
Neff 4.9
Searched_HMMs 46136
Date Sat Aug 17 00:37:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3705|consensus 100.0 1.2E-50 2.6E-55 350.1 4.0 127 2-128 161-287 (580)
2 PF10250 O-FucT: GDP-fucose pr 93.5 0.052 1.1E-06 44.6 2.3 32 62-94 6-37 (351)
3 PF05830 NodZ: Nodulation prot 90.3 0.36 7.7E-06 41.6 3.8 61 55-117 3-73 (321)
4 PF03254 XG_FTase: Xyloglucan 81.4 8.9 0.00019 34.8 8.0 43 46-93 106-148 (476)
5 COG3657 Uncharacterized protei 75.2 3.6 7.8E-05 30.0 3.0 45 17-61 6-53 (100)
6 PF15174 PRNT: Prion-related p 59.4 9.3 0.0002 24.5 2.2 23 37-59 25-51 (51)
7 PRK10404 hypothetical protein; 52.9 26 0.00056 25.2 3.9 38 7-46 14-51 (101)
8 PRK10132 hypothetical protein; 35.0 67 0.0015 23.4 3.8 37 8-46 22-58 (108)
9 COG0374 HyaB Ni,Fe-hydrogenase 32.0 46 0.001 30.8 3.1 51 1-51 365-431 (545)
10 KOG1946|consensus 32.0 52 0.0011 27.3 3.1 43 14-61 107-150 (240)
11 KOG3849|consensus 30.1 37 0.0008 29.6 2.0 38 53-92 28-66 (386)
12 PF02201 SWIB: SWIB/MDM2 domai 26.2 1.5E+02 0.0032 19.7 4.1 44 10-60 7-50 (76)
13 COG4575 ElaB Uncharacterized c 23.7 1.5E+02 0.0033 21.7 4.0 37 8-46 18-54 (104)
14 PF07796 DUF1638: Protein of u 22.7 17 0.00036 27.5 -1.3 73 30-108 10-96 (166)
15 PF04375 HemX: HemX; InterPro 20.6 2.1E+02 0.0046 24.6 4.9 28 22-49 123-150 (372)
16 KOG4108|consensus 20.5 2.2E+02 0.0047 22.7 4.6 44 22-70 92-138 (174)
17 cd05797 Ribosomal_L10 Ribosoma 20.4 2.3E+02 0.005 20.9 4.6 39 12-50 118-156 (157)
No 1
>KOG3705|consensus
Probab=100.00 E-value=1.2e-50 Score=350.11 Aligned_cols=127 Identities=60% Similarity=1.091 Sum_probs=124.9
Q ss_pred cchHHHHhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccchHHHHHHHHHHHH
Q psy8981 2 EIAPVFRSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVA 81 (134)
Q Consensus 2 ~~~~~~~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfGC~~H~~~~Cl~~A 81 (134)
|.++|+||||.|++.|.+.||+++||.|++.+|+++||+||+++|||+||++||||+|+++++||||||+||++|||++|
T Consensus 161 ~~~~h~rSlm~d~~~l~q~dG~e~wR~Kea~dlt~lvqrri~~LQNPkdCs~AkkLVCnlnKgCGyGCQLHHVvYCfi~A 240 (580)
T KOG3705|consen 161 ETAEHMRSLMGDSAQLEQLDGSEEWRFKEATDLTQLVQRRIEKLQNPKDCSEAKKLVCNLNKGCGYGCQLHHVVYCFITA 240 (580)
T ss_pred hhHHHHHHHHhHHHHHHhccCcHHHHHhHHhHHHHHHHHHHHHhcChHhhHHHhhheeeccCCcccccceeeeeEeeeee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcEEEEecCCCcccCCCcccccccCCCCCCCCCCCCCCcCCCCC
Q psy8981 82 YATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNSGWPGKG 128 (134)
Q Consensus 82 ~~t~Rtlil~~~~~~Y~~~gw~~~F~P~S~~C~~~~~~~~~~W~~~~ 128 (134)
|+|.||||+++.+|+|+.+||+++|+|+|++|.++++.++..|||++
T Consensus 241 yaTqRtliLks~gWrY~~gGWe~VF~pvS~~c~D~~~~nT~~wpg~~ 287 (580)
T KOG3705|consen 241 YATQRTLILKSDGWRYSSGGWESVFKPVSKCCFDEAVGNTEAWPGAE 287 (580)
T ss_pred eecceEEEEecCCceecCCChhhhhhhhhhcccccccccccCCCCCC
Confidence 99999999999999999999999999999999999999999999976
No 2
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=93.48 E-value=0.052 Score=44.64 Aligned_cols=32 Identities=28% Similarity=0.270 Sum_probs=25.7
Q ss_pred CCCcccchHHHHHHHHHHHHHhcCcEEEEecCC
Q psy8981 62 NKGCGYGCQLHHVVYCFIVAYATRRTLILDSKE 94 (134)
Q Consensus 62 ~~~CGfGC~~H~~~~Cl~~A~~t~Rtlil~~~~ 94 (134)
..| |||-|.-++...+.+|..+|||||+-.-.
T Consensus 6 ~~G-GfnNQr~~~~~a~~~A~~LnRTLVLPp~~ 37 (351)
T PF10250_consen 6 CMG-GFNNQRMGFENAVVFAKALNRTLVLPPFI 37 (351)
T ss_dssp -SS-SHHHHHHHHHHHHHHHHHHT-EEE--EEE
T ss_pred CCC-CHHHHHHHHHHHHHHHHHhCCEEEcCCcc
Confidence 457 99999999999999999999999998643
No 3
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=90.26 E-value=0.36 Score=41.58 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=40.9
Q ss_pred CeeeeecCCCcccchHHHHHHHHHHHHHhcCcEEEEecCCCcccC----CCcccccccCCC------CCCCCC
Q psy8981 55 RKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSKEWSYSR----GGWEEVFQPVSK------TCTSPE 117 (134)
Q Consensus 55 kkL~c~~~~~CGfGC~~H~~~~Cl~~A~~t~Rtlil~~~~~~Y~~----~gw~~~F~P~S~------~C~~~~ 117 (134)
++++|. ..-|||-.+-.++-|-.+|=.|||+||+|..+..|.. +-+.-+|.|+-+ .|.++.
T Consensus 3 r~~~~r--~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f~n~f~~ffepv~~i~~~~~~~~d~i 73 (321)
T PF05830_consen 3 RFVVSR--RRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPFTNAFPVFFEPVEDIAGVRVICDDRI 73 (321)
T ss_dssp -EEEEE----S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTTSBSHHHHB---SEETTEEEE-SGGG
T ss_pred ceEEEe--ccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcccccCCcccchhhhhcCceeEecchh
Confidence 577777 4779999999999999999999999999999998853 457778999652 566654
No 4
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=81.35 E-value=8.9 Score=34.78 Aligned_cols=43 Identities=23% Similarity=0.448 Sum_probs=36.8
Q ss_pred cCCCCccccCeeeeecCCCcccchHHHHHHHHHHHHHhcCcEEEEecC
Q psy8981 46 QNPPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSK 93 (134)
Q Consensus 46 QNP~dC~~AkkL~c~~~~~CGfGC~~H~~~~Cl~~A~~t~Rtlil~~~ 93 (134)
..+.+| |+||.. ..-|+|-.|=-++--|..|+-|+|||+++..
T Consensus 106 ~~~~~C---kYvVw~--~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~ 148 (476)
T PF03254_consen 106 DGTSEC---KYVVWI--PYSGLGNRMLSLASAFLYALLTNRVLLVDPG 148 (476)
T ss_pred CCCCCC---cEEEEe--cCCchHHHHHHHHHHHHHHHHhCcEEEEecC
Confidence 456666 678875 3679999999999999999999999999984
No 5
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.23 E-value=3.6 Score=30.01 Aligned_cols=45 Identities=31% Similarity=0.409 Sum_probs=32.1
Q ss_pred HhccCChhHHHHHHhH-HHHHHHHHHHHhhc--CCCCccccCeeeeec
Q psy8981 17 LKARDSFDDWRLKESL-DLSDLVQRRLEYLQ--NPPDCRTARKLVCEL 61 (134)
Q Consensus 17 L~~~dg~~~wr~~~~~-~Ls~~vQ~rI~~lQ--NP~dC~~AkkL~c~~ 61 (134)
+...|-+++|+.+.-. .....+.+||.++| ||.|++..+.=+..+
T Consensus 6 ~~~~d~F~~W~~kLkD~~Aka~I~~Rl~rl~~GN~GD~kpvgeGV~EL 53 (100)
T COG3657 6 LKGTDTFSEWLKKLKDRRAKAKIAARLDRLALGNFGDVKPVGEGVSEL 53 (100)
T ss_pred ecchHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCcCccccccchhhh
Confidence 4556778899987543 44567899999999 999977654444433
No 6
>PF15174 PRNT: Prion-related protein testis-specific
Probab=59.43 E-value=9.3 Score=24.51 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=17.3
Q ss_pred HHHHHHHhhcCCCCccc----cCeeee
Q psy8981 37 LVQRRLEYLQNPPDCRT----ARKLVC 59 (134)
Q Consensus 37 ~vQ~rI~~lQNP~dC~~----AkkL~c 59 (134)
.|-..++++|-|-||.. .||++|
T Consensus 25 avthSLW~LqiPvDcQACnRkskkiyc 51 (51)
T PF15174_consen 25 AVTHSLWHLQIPVDCQACNRKSKKIYC 51 (51)
T ss_pred HHHHHHHhhcCCcchhhhccccceecC
Confidence 35678999999999964 555554
No 7
>PRK10404 hypothetical protein; Provisional
Probab=52.87 E-value=26 Score=25.20 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhc
Q psy8981 7 FRSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQ 46 (134)
Q Consensus 7 ~~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQ 46 (134)
-++|..|+|.|.+..+... ..++.+|.+.++.+|+..+
T Consensus 14 l~~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar 51 (101)
T PRK10404 14 LTLLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVK 51 (101)
T ss_pred HHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHH
Confidence 4688899999988776555 6778888888888887766
No 8
>PRK10132 hypothetical protein; Provisional
Probab=35.01 E-value=67 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.039 Sum_probs=22.8
Q ss_pred HhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhc
Q psy8981 8 RSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQ 46 (134)
Q Consensus 8 ~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQ 46 (134)
++|+.|+|.|.+-.+... ..++.++...++..|+..+
T Consensus 22 ~~L~~~le~ll~~~~~~~--~~~~~~lR~r~~~~L~~ar 58 (108)
T PRK10132 22 NQLADSLESVLKSWGSDA--KGEAEAARRKAQALLKETR 58 (108)
T ss_pred HHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHH
Confidence 567777777766554333 4556677776666665544
No 9
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion]
Probab=32.05 E-value=46 Score=30.82 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=38.8
Q ss_pred CcchHHHHhHHH---HHH-------------HHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCc
Q psy8981 1 MEIAPVFRSLLH---VLD-------------TLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDC 51 (134)
Q Consensus 1 ~~~~~~~~sL~~---dle-------------~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC 51 (134)
||+||+-|-|.. ..+ .+.+.-|...-|..|.+.+++.+++.+..+=.+-.+
T Consensus 365 ~EVGPLAR~li~~~~~~~~~~~~~~~~~~~~~~~St~~R~~AR~~E~~~~~~~l~~~~~el~~n~~~ 431 (545)
T COG0374 365 VEVGPLARMLIAYAPGSTNLQEAKFTELPLEGIFSTLGRTAARVLEAKAAANILLKWLEELMENLKK 431 (545)
T ss_pred eeeCcHHHHHHhhcCCccccccchhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 799999999887 332 233444555678899999999999999988876654
No 10
>KOG1946|consensus
Probab=31.99 E-value=52 Score=27.26 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=27.4
Q ss_pred HHHHhccCChhH-HHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeec
Q psy8981 14 LDTLKARDSFDD-WRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCEL 61 (134)
Q Consensus 14 le~L~~~dg~~~-wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~ 61 (134)
+..|++++|.+. -|......+-++|.+ +.||||.| -++++|+=
T Consensus 107 s~~L~~~~G~~~lsR~~vvk~iw~YIke--~nLqDP~n---kr~IlCDe 150 (240)
T KOG1946|consen 107 SPSLARFVGTSELSRTDVVKKIWAYIKE--HNLQDPKN---KREILCDE 150 (240)
T ss_pred CHHHHhhcccccccHHHHHHHHHHHHHH--hccCCccc---cCeeeeHH
Confidence 345667775554 233444455555433 67999998 68899994
No 11
>KOG3849|consensus
Probab=30.15 E-value=37 Score=29.58 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=29.8
Q ss_pred ccCee-eeecCCCcccchHHHHHHHHHHHHHhcCcEEEEec
Q psy8981 53 TARKL-VCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDS 92 (134)
Q Consensus 53 ~AkkL-~c~~~~~CGfGC~~H~~~~Cl~~A~~t~Rtlil~~ 92 (134)
.|.+| +|.- .=-||-|.-|...-|..|=+.|||||+..
T Consensus 28 P~GYl~yCPC--MGRFGNQaDhFLGsLAFAKaLnRTL~lPp 66 (386)
T KOG3849|consen 28 PAGYLLYCPC--MGRFGNQADHFLGSLAFAKALNRTLVLPP 66 (386)
T ss_pred CCccEEEccc--cccccchHHHHHHHHHHHHHhcccccCCc
Confidence 35554 3442 22499999999999999999999999875
No 12
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=26.22 E-value=1.5e+02 Score=19.65 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeee
Q psy8981 10 LLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCE 60 (134)
Q Consensus 10 L~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~ 60 (134)
|..++..+-..+. .-|......+-+.|. -+.+|||.| .+.+.|+
T Consensus 7 ls~~L~~~lg~~~--~sr~~v~~~lw~YIk--~~~L~dp~~---k~~I~cD 50 (76)
T PF02201_consen 7 LSPELAEFLGEDE--LSRSEVVKRLWQYIK--ENNLQDPKD---KRIIICD 50 (76)
T ss_dssp HHHHHHHHTT-SC--EEHHHHHHHHHHHHH--HTTSBESSS---TTEEE-T
T ss_pred CCHHHHHHhCCCC--CCHHHHHHHHHHHHH--HhcCCCccc---CceEecC
Confidence 4445555555553 334667777777775 468999998 4567887
No 13
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=23.67 E-value=1.5e+02 Score=21.73 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=22.9
Q ss_pred HhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhc
Q psy8981 8 RSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQ 46 (134)
Q Consensus 8 ~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQ 46 (134)
+.|..++|.|-+--|.-. ..++.+|...++..|+..|
T Consensus 18 ~~L~d~lEevL~ssg~~a--~~e~~~lR~r~~~~Lk~~r 54 (104)
T COG4575 18 QELLDTLEEVLKSSGSLA--GDEAEELRSKAESALKEAR 54 (104)
T ss_pred HHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHH
Confidence 456666777666555444 5666677666666665544
No 14
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=22.70 E-value=17 Score=27.53 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=46.4
Q ss_pred HhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccc----hHH--------HHHHHHHHHHHhcCcEE--EEecCCC
Q psy8981 30 ESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYG----CQL--------HHVVYCFIVAYATRRTL--ILDSKEW 95 (134)
Q Consensus 30 ~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfG----C~~--------H~~~~Cl~~A~~t~Rtl--il~~~~~ 95 (134)
.-++|...||+.|+...... ..++.-. -.||-| ... =.+--|.-+.++.++.. +....+.
T Consensus 10 ~p~~L~~~lq~~id~~~~~~-----d~Ill~Y-G~Cg~~~g~~~~~~~~~~~~~~~~~dCI~~lLG~~~~~~~~~~~~gt 83 (166)
T PF07796_consen 10 DPDKLRKELQEEIDKASKDY-----DGILLFY-GLCGNGLGLIARRLPELGLVIPRVDDCIELLLGSEERYKEILREAGT 83 (166)
T ss_pred CHHHHHHHHHHHHHHhhccC-----CeEEEEE-eCCCCccchhhhhccccceeEeCCCccHHHHcCChHHHHHHhcCCCe
Confidence 34789999999999999333 3444444 359977 111 12234888888887663 3344444
Q ss_pred cccCCCccccccc
Q psy8981 96 SYSRGGWEEVFQP 108 (134)
Q Consensus 96 ~Y~~~gw~~~F~P 108 (134)
-|.++||.+.++.
T Consensus 84 ~flT~gW~~~~~~ 96 (166)
T PF07796_consen 84 YFLTPGWLKNWRD 96 (166)
T ss_pred EEECcHHHHHhHH
Confidence 4567888877766
No 15
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=20.57 E-value=2.1e+02 Score=24.58 Aligned_cols=28 Identities=36% Similarity=0.451 Sum_probs=26.1
Q ss_pred ChhHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy8981 22 SFDDWRLKESLDLSDLVQRRLEYLQNPP 49 (134)
Q Consensus 22 g~~~wr~~~~~~Ls~~vQ~rI~~lQNP~ 49 (134)
+..+|+--|+..|-+++.+||+..+|+.
T Consensus 123 ~~~dW~LaEaeyLlrlA~qrL~l~~Dv~ 150 (372)
T PF04375_consen 123 SRDDWLLAEAEYLLRLANQRLQLEGDVQ 150 (372)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 6789999999999999999999999875
No 16
>KOG4108|consensus
Probab=20.53 E-value=2.2e+02 Score=22.74 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=32.2
Q ss_pred ChhHHHH-HHhHHHHHHHHHHHHhhcCCCCccccCeeeeecC--CCcccchH
Q psy8981 22 SFDDWRL-KESLDLSDLVQRRLEYLQNPPDCRTARKLVCELN--KGCGYGCQ 70 (134)
Q Consensus 22 g~~~wr~-~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~--~~CGfGC~ 70 (134)
-++.|.. +-.++|++.|..||..++.|. =|++|.+. ..+|=|+.
T Consensus 92 ~Y~~~~a~~lt~elae~I~~rvK~l~~~R-----YK~Vv~V~ige~~gqGv~ 138 (174)
T KOG4108|consen 92 EYDPDEALQLTKELAEEIKDRVKELGYPR-----YKYVVQVMIGEQLGQGVY 138 (174)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCCc-----eEEEEEEEEhhhhcchHH
Confidence 3455555 567899999999999999776 37888873 36776653
No 17
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=20.37 E-value=2.3e+02 Score=20.88 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=33.4
Q ss_pred HHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCC
Q psy8981 12 HVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPD 50 (134)
Q Consensus 12 ~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~d 50 (134)
.|++.|.++++.++=+.+-+.-|+.-+++-..-+|.|++
T Consensus 118 ~~v~~la~LPs~e~l~a~l~~~l~~p~~~l~~~L~~~~~ 156 (157)
T cd05797 118 EEVKALAKLPSREELLAQLLGLLQAPATKLVRVLNAPAS 156 (157)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999998888888888888888888887753
Done!