Query psy8981
Match_columns 134
No_of_seqs 104 out of 106
Neff 4.9
Searched_HMMs 29240
Date Sat Aug 17 00:38:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2de0_X Alpha-(1,6)-fucosyltran 100.0 1E-38 3.4E-43 280.4 14.8 125 3-127 94-218 (526)
2 2hhc_A NODZ, nodulation fucosy 98.6 2.2E-08 7.4E-13 81.1 5.1 63 51-115 1-67 (330)
3 4ap5_A GDP-fucose protein O-fu 77.0 2 6.9E-05 35.5 3.7 42 52-93 20-65 (408)
4 3zy2_A Putative GDP-fucose pro 58.6 5.1 0.00017 33.9 2.4 34 57-92 12-45 (362)
5 1ete_A FLT3 ligand; four-helix 57.8 14 0.00049 26.9 4.4 41 14-62 57-102 (134)
6 1x4t_A Hypothetical protein LO 25.5 23 0.00079 24.5 1.0 27 19-49 22-48 (92)
7 2w6a_A ARF GTPase-activating p 24.5 73 0.0025 20.4 3.2 40 4-47 16-55 (63)
8 1zz1_A Histone deacetylase-lik 22.3 44 0.0015 27.7 2.3 31 62-93 147-180 (369)
9 1c3p_A Protein (HDLP (histone 21.9 46 0.0016 27.7 2.4 30 63-93 137-168 (375)
10 3vh7_B CP32M; 6-helix bundle, 21.4 83 0.0028 17.1 2.7 20 29-48 15-34 (34)
11 3vgx_D Envelope glycoprotein G 20.7 89 0.003 16.7 2.7 20 29-48 13-32 (32)
No 1
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=280.43 Aligned_cols=125 Identities=58% Similarity=1.150 Sum_probs=120.2
Q ss_pred chHHHHhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccchHHHHHHHHHHHHH
Q psy8981 3 IAPVFRSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVAY 82 (134)
Q Consensus 3 ~~~~~~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfGC~~H~~~~Cl~~A~ 82 (134)
+.||++||++|++.|.++||+++||.+++++|+++||++|+.+|||+||++||+|+|++..+|||||+|||+++||.+|+
T Consensus 94 ~~~~~~~l~~~~~~l~~~~g~~~~r~~~~~~lt~~vq~~i~~~QnP~~Cs~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~ 173 (526)
T 2de0_X 94 LGHHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAY 173 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGSCEEEEECCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCEEEEEecCCCchHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hcCcEEEEecCCCcccCCCcccccccCCCCCCCCCCCCCCcCCCC
Q psy8981 83 ATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNSGWPGK 127 (134)
Q Consensus 83 ~t~Rtlil~~~~~~Y~~~gw~~~F~P~S~~C~~~~~~~~~~W~~~ 127 (134)
++|||||+|..+|.|+.++|+++|+|+|++|..+.+...+.||+.
T Consensus 174 ~~~Rtliidd~~w~Y~~g~w~~yF~P~s~~C~~~~~~~~~~w~~~ 218 (526)
T 2de0_X 174 GTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGE 218 (526)
T ss_dssp HHTCEEEEECTTCSSCTTCGGGTBCCSCSSCCCCCCSCCCBCCCT
T ss_pred hhCCEEEEECCCCCcCCCCHHHhhhCcCccccCCCccccCCCCCc
Confidence 999999999999999888999999999999999876667899975
No 2
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=98.65 E-value=2.2e-08 Score=81.13 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=49.9
Q ss_pred ccccCeeeeecCCCcccchHHHHHHHHHHHHHhcCcEEEEecCCCcccCC----CcccccccCCCCCCC
Q psy8981 51 CRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSKEWSYSRG----GWEEVFQPVSKTCTS 115 (134)
Q Consensus 51 C~~AkkL~c~~~~~CGfGC~~H~~~~Cl~~A~~t~Rtlil~~~~~~Y~~~----gw~~~F~P~S~~C~~ 115 (134)
|+++|++++.. .+|+|++|++++.|+.+|+.+||+|++|..++.|... .|.-+|.|+++.|.+
T Consensus 1 ~~~~r~iv~~~--~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~~~y~~~~~~~~fp~~F~~v~~~~~~ 67 (330)
T 2hhc_A 1 MTKERFVISRR--RTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFEPVEDIAGV 67 (330)
T ss_dssp -CCCCEEEEEC--CSCHHHHHHHHHHHHHHHHHHTCEEEEECBTCTTCSSTTSBSHHHHBCCCSEETTE
T ss_pred CCCCCEEEEeC--CCcHHHHHHHHHHHHHHHHHhCCEEEEECCCcccCCCCccccCcccccchhhhccc
Confidence 78899999984 7899999999999999999999999999887777543 343346666654443
No 3
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=77.05 E-value=2 Score=35.46 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=37.0
Q ss_pred cccCeeeeecCCCcccchHHHHHHHHHHHHHhcCcE----EEEecC
Q psy8981 52 RTARKLVCELNKGCGYGCQLHHVVYCFIVAYATRRT----LILDSK 93 (134)
Q Consensus 52 ~~AkkL~c~~~~~CGfGC~~H~~~~Cl~~A~~t~Rt----lil~~~ 93 (134)
++-|+|+.+++.|=||+.|-=++...+.+|...||| |||-.-
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw 65 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPW 65 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCB
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCC
Confidence 346899999887889999999999999999999999 999853
No 4
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=58.58 E-value=5.1 Score=33.94 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=28.0
Q ss_pred eeeecCCCcccchHHHHHHHHHHHHHhcCcEEEEec
Q psy8981 57 LVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDS 92 (134)
Q Consensus 57 L~c~~~~~CGfGC~~H~~~~Cl~~A~~t~Rtlil~~ 92 (134)
|+|.= .=-||-|+-|....|..|=+.|||||+-.
T Consensus 12 ~yCPC--MGRFGNQadhfLG~LafAk~lnRTLvlPp 45 (362)
T 3zy2_A 12 VFCPC--MGRFGNQVDQFLGVLAFAKALDRTLVLPN 45 (362)
T ss_dssp EECCC--SSSHHHHHHHHHHHHHHHHHHTCEEECCC
T ss_pred EeCCC--cCccccHHHHHHHHHHHHHhhCceEecCc
Confidence 45543 22499999999999999999999999953
No 5
>1ete_A FLT3 ligand; four-helix bundle, cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qs7_A* 3qs9_A
Probab=57.77 E-value=14 Score=26.94 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=33.5
Q ss_pred HHHHhccCChhHHHHHHhHHHHHHHHHHHHh-----hcCCCCccccCeeeeecC
Q psy8981 14 LDTLKARDSFDDWRLKESLDLSDLVQRRLEY-----LQNPPDCRTARKLVCELN 62 (134)
Q Consensus 14 le~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~-----lQNP~dC~~AkkL~c~~~ 62 (134)
|+.|..+.| +++++|-+.|+..|+. .|+|+.| ++++..++.
T Consensus 57 m~rLk~vaG------s~m~~Lle~VntEI~FVt~C~fq~~p~C--lrF~q~NiS 102 (134)
T 1ete_A 57 MERLKTVAG------SKMQGLLERVNTEIHFVTKCAFQPPPSC--LRFVQTNIS 102 (134)
T ss_dssp HHHHHTTBC------HHHHHHHHHHHHHHGGGGGSCCCCCCTT--CCEEEEEHH
T ss_pred HHHHHHhhh------HHHHHHHHHhccceehhhhhhcCCCHHH--HHHHHHhHH
Confidence 566777764 4678999999999996 7999999 888888873
No 6
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=25.54 E-value=23 Score=24.46 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=18.2
Q ss_pred ccCChhHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy8981 19 ARDSFDDWRLKESLDLSDLVQRRLEYLQNPP 49 (134)
Q Consensus 19 ~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~ 49 (134)
++..++.||...+.+++ +.|..+|||.
T Consensus 22 ~l~~AekWR~qvikEIs----~Kv~~Iqn~~ 48 (92)
T 1x4t_A 22 ELPKAEKWRRQIIGEIS----KKVAQIQNAG 48 (92)
T ss_dssp CHHHHHHHHHHHHHHHH----HHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHH----HHHHHhhCCC
Confidence 34456788887776655 4566788885
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.47 E-value=73 Score=20.44 Aligned_cols=40 Identities=13% Similarity=0.032 Sum_probs=23.6
Q ss_pred hHHHHhHHHHHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcC
Q psy8981 4 APVFRSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQN 47 (134)
Q Consensus 4 ~~~~~sL~~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQN 47 (134)
-+++++|..-=.+++++-..+.--. .+ -++.|+.|+.+|.
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls---~E-lr~mQ~~lq~LQs 55 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLS---DE-LRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhh---HH-HHHHHHHHHHHHh
Confidence 3567777766666666653333111 22 2356888888884
No 8
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=22.35 E-value=44 Score=27.69 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=26.0
Q ss_pred CCCcccchHHHHHHHHHHHHHhc---CcEEEEecC
Q psy8981 62 NKGCGYGCQLHHVVYCFIVAYAT---RRTLILDSK 93 (134)
Q Consensus 62 ~~~CGfGC~~H~~~~Cl~~A~~t---~Rtlil~~~ 93 (134)
....|| |.+-+++.....|... .|++|+|..
T Consensus 147 ~~a~GF-C~fNnvAiAa~~l~~~~g~~RV~IvD~D 180 (369)
T 1zz1_A 147 NAAMGF-CIFNNTSVAAGYARAVLGMERVAILDWD 180 (369)
T ss_dssp TCCBTT-BSSCHHHHHHHHHHHTSCCSCEEEEECS
T ss_pred CCCCCc-hHhhHHHHHHHHHHHhcCCCeEEEEecC
Confidence 447898 9999999998888754 799999975
No 9
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=21.93 E-value=46 Score=27.65 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCcccchHHHHHHHHHHHHHhc--CcEEEEecC
Q psy8981 63 KGCGYGCQLHHVVYCFIVAYAT--RRTLILDSK 93 (134)
Q Consensus 63 ~~CGfGC~~H~~~~Cl~~A~~t--~Rtlil~~~ 93 (134)
...|| |.+-+++.....+... .|++|+|..
T Consensus 137 ~a~GF-C~fNnvAiAa~~l~~~g~~RV~IvD~D 168 (375)
T 1c3p_A 137 RANGF-CYINNPAVGIEYLRKKGFKRILYIDLD 168 (375)
T ss_dssp BCBTT-BSSCHHHHHHHHHHHTTCCCEEEEECS
T ss_pred cCCCc-eeecHHHHHHHHHHHhCCCeEEEEecC
Confidence 35788 8888888877776654 599999975
No 10
>3vh7_B CP32M; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_D
Probab=21.36 E-value=83 Score=17.14 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHHHHhhcCC
Q psy8981 29 KESLDLSDLVQRRLEYLQNP 48 (134)
Q Consensus 29 ~~~~~Ls~~vQ~rI~~lQNP 48 (134)
++...++..+-.-|...|||
T Consensus 15 kei~n~t~~Iy~lle~sq~q 34 (34)
T 3vh7_B 15 REIENYTKLIYKILEESQEQ 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 67888999999999999986
No 11
>3vgx_D Envelope glycoprotein GP160; 6-helix bundle, membrane fusion, membrane protein; HET: GOL; 1.74A {Human immunodeficiency virus type 1}
Probab=20.67 E-value=89 Score=16.73 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHHHHHhhcCC
Q psy8981 29 KESLDLSDLVQRRLEYLQNP 48 (134)
Q Consensus 29 ~~~~~Ls~~vQ~rI~~lQNP 48 (134)
++...++..+-.-|...|||
T Consensus 13 kei~n~t~~Iy~lle~sq~q 32 (32)
T 3vgx_D 13 REINNYTSLIHSLIEESQNQ 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 67788999999999999886
Done!