Query psy8981
Match_columns 134
No_of_seqs 104 out of 106
Neff 4.9
Searched_HMMs 13730
Date Sat Aug 17 00:38:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8981.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8981hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v32a_ a.42.1.1 (A:) Hypothet 30.3 37 0.0027 21.8 4.5 36 21-61 31-66 (101)
2 d1v31a_ a.42.1.1 (A:) Hypothet 27.6 21 0.0015 22.4 2.7 42 13-61 17-58 (93)
3 d1ixta_ g.3.6.1 (A:) Conotoxin 24.3 18 0.0013 18.1 1.5 19 45-66 6-24 (27)
4 d1uhra_ a.42.1.1 (A:) SWI/SNF 21.0 25 0.0018 22.1 2.1 41 14-61 18-58 (93)
5 d1x4ta1 a.2.15.1 (A:7-86) Pre- 21.0 15 0.0011 23.1 1.0 27 19-49 16-42 (80)
6 d1ve3a1 c.66.1.43 (A:2-227) Hy 20.1 65 0.0047 20.8 4.4 51 25-93 18-68 (226)
7 d1im8a_ c.66.1.14 (A:) Hypothe 17.6 75 0.0055 21.1 4.3 39 17-71 16-54 (225)
8 d1mb6a_ g.3.6.2 (A:) Huwentoxi 17.5 30 0.0022 18.4 1.6 15 47-61 10-26 (35)
9 d2e1fa1 a.60.8.1 (A:1142-1235) 14.1 82 0.006 19.2 3.4 33 12-44 52-84 (94)
10 d3c10a1 c.42.1.2 (A:515-900) H 13.0 42 0.003 25.7 2.0 30 63-93 161-193 (386)
No 1
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.32 E-value=37 Score=21.75 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=25.5
Q ss_pred CChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeec
Q psy8981 21 DSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCEL 61 (134)
Q Consensus 21 dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~ 61 (134)
++..--|....+.+.++|.. +.||||.| -++++|+-
T Consensus 31 ~~~~~sR~eVtk~iw~YIK~--nnLqdp~n---kr~I~~D~ 66 (101)
T d1v32a_ 31 TSEMISRYDVSDTIAKYISK--EGLLDPSN---KKKVVCDK 66 (101)
T ss_dssp CSSCCCHHHHHHHHHHHHHH--HTCBCSSC---TTEEECCS
T ss_pred CcccCCHHHHHHHHHHHHHH--hcCCCCcc---CCEEccCH
Confidence 34444566677777777654 68999998 67888983
No 2
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.59 E-value=21 Score=22.45 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeec
Q psy8981 13 VLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCEL 61 (134)
Q Consensus 13 dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~ 61 (134)
+|.++-..+ +.-|....+.|-++|.. +.||||.| -+++.|+=
T Consensus 17 ~La~~lg~~--~~sR~~v~k~iw~YIk~--n~Lqd~~n---kr~I~~D~ 58 (93)
T d1v31a_ 17 ALMDVLGIE--VETRPRIIAAIWHYVKA--RKLQNPND---PSFFNCDA 58 (93)
T ss_dssp HHHHHSCCS--EECSHHHHHHHHHHHHH--TTCBCSSC---SSEEECCS
T ss_pred HHHHHHCcC--cCcHHHHHHHHHHHHHH--hCCCCCCC---CCEEecCH
Confidence 444454444 44577888888888854 69999997 67888873
No 3
>d1ixta_ g.3.6.1 (A:) Conotoxin {Conus gloriamaris, Tx IXa [TaxId: 37336]}
Probab=24.31 E-value=18 Score=18.11 Aligned_cols=19 Identities=42% Similarity=1.100 Sum_probs=13.6
Q ss_pred hcCCCCccccCeeeeecCCCcc
Q psy8981 45 LQNPPDCRTARKLVCELNKGCG 66 (134)
Q Consensus 45 lQNP~dC~~AkkL~c~~~~~CG 66 (134)
-|.-+|| |.-.+|.+ .+||
T Consensus 6 cqshsdc--ashcictf-rgcg 24 (27)
T d1ixta_ 6 CQSHSDC--ASHCICTF-RGCG 24 (27)
T ss_dssp CSSSSCS--SSSEEEET-TEEE
T ss_pred ccchhhh--hhceeEee-eccc
Confidence 3666777 55788887 6787
No 4
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.02 E-value=25 Score=22.15 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=29.0
Q ss_pred HHHHhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeec
Q psy8981 14 LDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCEL 61 (134)
Q Consensus 14 le~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~ 61 (134)
|.++-..+ +.-|....+.|-++|+. +.||||.| -+.+.|+-
T Consensus 18 La~~lg~~--~~sR~~v~k~iw~YIk~--n~Lqdp~n---kr~I~cD~ 58 (93)
T d1uhra_ 18 LARLLGIH--TQTRPVIIQALWQYIKT--HKLQDPHE---REFVLCDK 58 (93)
T ss_dssp HHHHTCCS--EEEHHHHHHHHHHHHHH--TTCBCSSC---SSEECCCT
T ss_pred HHHHHCCC--CcCHHHHHHHHHHHHHH--hcCCCCCC---CCEEecCH
Confidence 33444444 34478888888888855 69999997 67788884
No 5
>d1x4ta1 a.2.15.1 (A:7-86) Pre-mRNA-splicing factor ISY1 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.99 E-value=15 Score=23.13 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=18.5
Q ss_pred ccCChhHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy8981 19 ARDSFDDWRLKESLDLSDLVQRRLEYLQNPP 49 (134)
Q Consensus 19 ~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~ 49 (134)
++..++.||...+.++++. +..+|||.
T Consensus 16 ~l~~aekwR~~iikEI~~k----vs~Iqn~~ 42 (80)
T d1x4ta1 16 ELPKAEKWRRQIIGEISKK----VAQIQNAG 42 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHH----HHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHH----HHHhcCCC
Confidence 4455678888877776654 55678875
No 6
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.06 E-value=65 Score=20.84 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccchHHHHHHHHHHHHHhcCcEEEEecC
Q psy8981 25 DWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSK 93 (134)
Q Consensus 25 ~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfGC~~H~~~~Cl~~A~~t~Rtlil~~~ 93 (134)
.+...++..+...+++-| |++ . -+.++ +||-|....+++- . ..++.-+|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~l-----~~~----~-~ILDi--GcG~G~~~~~la~-----~-~~~v~giD~S 68 (226)
T d1ve3a1 18 QEYRSRIETLEPLLMKYM-----KKR----G-KVLDL--ACGVGGFSFLLED-----Y-GFEVVGVDIS 68 (226)
T ss_dssp HHHHHHHHHHHHHHHHSC-----CSC----C-EEEEE--TCTTSHHHHHHHH-----T-TCEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHhc-----CCC----C-EEEEE--CCCcchhhhhHhh-----h-hccccccccc
Confidence 334455666666666644 322 2 24476 9999997766542 1 2355566654
No 7
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}
Probab=17.57 E-value=75 Score=21.14 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=21.4
Q ss_pred HhccCChhHHHHHHhHHHHHHHHHHHHhhcCCCCccccCeeeeecCCCcccchHH
Q psy8981 17 LKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGYGCQL 71 (134)
Q Consensus 17 L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~lQNP~dC~~AkkL~c~~~~~CGfGC~~ 71 (134)
.+.++|+..+ ++.+.. -+..+..|. .-+.++ +||.|-..
T Consensus 16 ~~~iP~Y~~~----~~~i~~----~~~~~~~~~------~~vLDl--GCGtG~~~ 54 (225)
T d1im8a_ 16 QRSVPGYSNI----ITAIGM----LAERFVTAD------SNVYDL--GCSRGAAT 54 (225)
T ss_dssp HHHSTTHHHH----HHHHHH----HHHHHCCTT------CEEEEE--SCTTCHHH
T ss_pred HhcCCCHHHH----HHHHHH----HHHHhcCCC------CEEEEe--ccchhhHH
Confidence 4567877774 222222 333333343 245676 99999754
No 8
>d1mb6a_ g.3.6.2 (A:) Huwentoxin-IV {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=17.53 E-value=30 Score=18.36 Aligned_cols=15 Identities=47% Similarity=0.986 Sum_probs=11.5
Q ss_pred CCCC--ccccCeeeeec
Q psy8981 47 NPPD--CRTARKLVCEL 61 (134)
Q Consensus 47 NP~d--C~~AkkL~c~~ 61 (134)
||+| |-+..+|+|+-
T Consensus 10 npsndqcck~s~lvcsr 26 (35)
T d1mb6a_ 10 NPSNDQCCKSSKLVCSR 26 (35)
T ss_dssp CSSSCCBCTTTTEEEET
T ss_pred CCCccccccccceeEec
Confidence 6765 77778899985
No 9
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.08 E-value=82 Score=19.23 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHHHhccCChhHHHHHHhHHHHHHHHHHHHh
Q psy8981 12 HVLDTLKARDSFDDWRLKESLDLSDLVQRRLEY 44 (134)
Q Consensus 12 ~dle~L~~~dg~~~wr~~~~~~Ls~~vQ~rI~~ 44 (134)
.+++.|.+++|.+..+.+..-++-..|++-...
T Consensus 52 ~t~~eL~~I~G~g~~k~~kyG~~l~~I~~~~~e 84 (94)
T d2e1fa1 52 TTVENVKRIDGVSEGKAAMLAPLLEVIKHFCQT 84 (94)
T ss_dssp CSHHHHTTSTTCCHHHHHHTHHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999998877776666666665543
No 10
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.98 E-value=42 Score=25.65 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=23.1
Q ss_pred CCcccchHHHHHHHHHHHHHhc---CcEEEEecC
Q psy8981 63 KGCGYGCQLHHVVYCFIVAYAT---RRTLILDSK 93 (134)
Q Consensus 63 ~~CGfGC~~H~~~~Cl~~A~~t---~Rtlil~~~ 93 (134)
.+.|| |.+-+++.....+... +|++|+|..
T Consensus 161 ~~~GF-C~fNdvAiaa~~l~~~~~~~rV~iiD~D 193 (386)
T d3c10a1 161 TAMGF-CFFNSVAIACRQLQQQSKASKILIVDWD 193 (386)
T ss_dssp BCBTT-BSSCHHHHHHHHHHHHSTTCCEEEEECS
T ss_pred ccCCc-ccccHHHHHHHHHHhhcccCCceEEecc
Confidence 36777 8888888877766655 599999975
Done!