RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8981
         (134 letters)



>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
           N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
          Length = 526

 Score =  152 bits (384), Expect = 6e-45
 Identities = 73/123 (59%), Positives = 91/123 (73%)

Query: 8   RSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKLVCELNKGCGY 67
           RS++  L  L   D   DWR KE+ DL++LVQRR+ YLQNP DC  A+KLVC +NKGCGY
Sbjct: 99  RSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGY 158

Query: 68  GCQLHHVVYCFIVAYATRRTLILDSKEWSYSRGGWEEVFQPVSKTCTSPEGVSNSGWPGK 127
           GCQLHHVVYCF++AY T+RTLIL+S+ W Y+ GGWE VF+PVS+TCT   G+S   W G+
Sbjct: 159 GCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGE 218

Query: 128 GMW 130
              
Sbjct: 219 VKD 221


>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
           1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
           3six_A*
          Length = 330

 Score = 83.0 bits (204), Expect = 3e-20
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 52  RTARKLVCELNKGCGYGCQLHHVVYCFIVAYATRRTLILDSKEWSYSRGGWE----EVFQ 107
              R ++    +  G+G  L  +   +  A  T RTL++D +   Y    +       F+
Sbjct: 2   TKERFVIS--RRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFE 59

Query: 108 PVSKTCTSP----EGVSNSGWPG 126
           PV      P    + V+   +PG
Sbjct: 60  PVEDIAGVPVICDDRVNQLSFPG 82


>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse,
           cytoplastic, hydrolase; 2.00A {Homo sapiens}
          Length = 223

 Score = 27.0 bits (59), Expect = 1.7
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 43  EYLQNPPDCRTARKLVCELNKGCGYG--CQLHH 73
            +L+  P     RK  C   + C YG  C+  H
Sbjct: 179 NFLRKKPLTLEHRKQPCPYGRKCTYGIKCRFFH 211


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 26.7 bits (58), Expect = 2.4
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 18  KARDSFDDW--RLKESLDLSDLVQRRLE--YLQNPPD 50
           KA+   ++W  R  E ++ + +  R  +  + Q P  
Sbjct: 115 KAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151


>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane,
           mitochondri nucleus, transmembrane; NMR {Mus musculus}
          Length = 170

 Score = 25.1 bits (54), Expect = 7.2
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 77  CFIVAYATRRTLILDSKEWSYSRGGWE---EVFQP 108
           C IV +     +    +    + GGW+     F+ 
Sbjct: 131 CLIVNFLYNLLMGRRHRARLEALGGWDGFCRFFKN 165


>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics,
           protein structure initiative; 1.65A {Pseudomonas
           syringae PV}
          Length = 253

 Score = 24.9 bits (55), Expect = 9.2
 Identities = 5/17 (29%), Positives = 8/17 (47%)

Query: 33  DLSDLVQRRLEYLQNPP 49
             ++  Q   EY  +PP
Sbjct: 193 TYAECAQLMSEYDPDPP 209


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,149,363
Number of extensions: 112453
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 10
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)