RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8981
         (134 letters)



>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 92

 Score = 26.3 bits (58), Expect = 0.67
 Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 9/80 (11%)

Query: 8  RSLLHVLDTLKARDSFDDWRLKESLDLSDLVQRRLEYLQNPPDCRTARKL-----VCELN 62
          + +L   +   +         K+     D+V       +N    + + +L     +   +
Sbjct: 7  KKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTH 66

Query: 63 KGCGYGC----QLHHVVYCF 78
               G     QL  ++   
Sbjct: 67 MRILEGVGTYLQLASMLAKI 86


>d1k1xa2 b.30.5.8 (A:385-659) 4-alpha-glucanotransferase, C-terminal
           domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
          Length = 275

 Score = 25.6 bits (56), Expect = 2.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 95  WSYSRGGWEEVFQPVSKTCTSP 116
            S S  GW+ + Q VS T   P
Sbjct: 240 LSQSEAGWDFIQQGVSYTMLFP 261


>d1c5aa_ a.50.1.1 (A:) C5a anaphylotoxin {Pig (Sus scrofa
          domestica) [TaxId: 9823]}
          Length = 66

 Score = 23.6 bits (51), Expect = 3.8
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 39 QRRLEYLQNPPDCRTARKLVCEL 61
          + R   ++  P C  A K  C +
Sbjct: 35 EERAARIKIGPKCVKAFKDCCYI 57


>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated
           herpesvirus [TaxId: 37296]}
          Length = 146

 Score = 24.4 bits (53), Expect = 3.8
 Identities = 7/35 (20%), Positives = 11/35 (31%)

Query: 69  CQLHHVVYCFIVAYATRRTLILDSKEWSYSRGGWE 103
                 +  F +A            +W  +RGGW 
Sbjct: 101 LSNEPHLRDFALAVLPAYAYEAIGPQWFRARGGWR 135


>d1kjsa_ a.50.1.1 (A:) C5a anaphylotoxin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 74

 Score = 23.2 bits (50), Expect = 5.3
 Identities = 5/22 (22%), Positives = 8/22 (36%)

Query: 39 QRRLEYLQNPPDCRTARKLVCE 60
          ++R   +   P C  A    C 
Sbjct: 35 EQRAARISLGPRCIKAFTECCV 56


>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline
           dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
          Length = 172

 Score = 23.6 bits (51), Expect = 9.3
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 4   APVFRSLLHVLDTLKARDSFDDWRLKESLDLSDL----VQRRLE 43
            P+  ++L ++ +L   D   + R  E L LS L    ++  +E
Sbjct: 129 TPLIDAVLDLISSLIDTDFRKEGRTLEKLGLSGLTAAGIRSAVE 172


>d1o75a1 b.1.20.1 (A:207-332) Tp47 lipoprotein, middle and
           C-terminal domains {Treponema pallidum [TaxId: 160]}
          Length = 126

 Score = 23.1 bits (49), Expect = 9.6
 Identities = 6/31 (19%), Positives = 10/31 (32%)

Query: 102 WEEVFQPVSKTCTSPEGVSNSGWPGKGMWLL 132
           W +  +    +C    G       G G + L
Sbjct: 79  WWKTGRVPRISCGINYGFDRFKGSGPGYYRL 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 542,699
Number of extensions: 23308
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)