BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8987
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5SDR3|BMI1_CHICK Polycomb complex protein BMI-1 OS=Gallus gallus GN=BMI1 PE=2 SV=1
Length = 326
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>sp|Q7T3E6|BMI1B_DANRE Polycomb complex protein BMI-1-B OS=Danio rerio GN=bmi1b PE=2 SV=1
Length = 324
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 61/87 (70%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+IVECLHS FCK+ CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIVECLHS---------FCKM----------CI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTKPLLNIR 70
>sp|P25916|BMI1_MOUSE Polycomb complex protein BMI-1 OS=Mus musculus GN=Bmi1 PE=1 SV=1
Length = 324
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>sp|Q5R8L2|BMI1_PONAB Polycomb complex protein BMI-1 OS=Pongo abelii GN=BMI1 PE=2 SV=1
Length = 326
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>sp|P35226|BMI1_HUMAN Polycomb complex protein BMI-1 OS=Homo sapiens GN=BMI1 PE=1 SV=2
Length = 326
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>sp|Q32KX7|BMI1_BOVIN Polycomb complex protein BMI-1 OS=Bos taurus GN=BMI1 PE=2 SV=1
Length = 326
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>sp|Q9TST0|BMI1_FELCA Polycomb complex protein BMI-1 OS=Felis catus GN=BMI1 PE=2 SV=1
Length = 326
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>sp|Q8JIR0|BMI1A_DANRE Polycomb complex protein BMI-1-A OS=Danio rerio GN=bmi1a PE=1 SV=2
Length = 320
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 61/87 (70%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLHS FCK+ CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLHS---------FCKM----------CI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTKPLLNIR 70
>sp|Q91648|BMI1A_XENLA Polycomb complex protein BMI-1-A OS=Xenopus laevis GN=bmi1a PE=1
SV=1
Length = 326
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 60/87 (68%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++AT+I+ECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>sp|P35227|PCGF2_HUMAN Polycomb group RING finger protein 2 OS=Homo sapiens GN=PCGF2 PE=1
SV=1
Length = 344
Score = 87.0 bits (214), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+C LC GYF++AT+IVECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCALCGGYFIDATTIVECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++T++YCP+CDVQ+++ P LS++
Sbjct: 44 VRYLETNKYCPMCDVQVHKTRPLLSIR 70
>sp|P23798|PCGF2_MOUSE Polycomb group RING finger protein 2 OS=Mus musculus GN=Pcgf2 PE=1
SV=2
Length = 342
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+C LC GYF++AT+IVECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCALCGGYFIDATTIVECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++T++YCP+CDVQ+++ P LS++
Sbjct: 44 VRYLETNKYCPMCDVQVHKTRPLLSIR 70
>sp|Q640D5|BMI1B_XENLA Polycomb complex protein BMI-1-B OS=Xenopus laevis GN=bmi1b PE=2
SV=1
Length = 323
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 59/87 (67%), Gaps = 19/87 (21%)
Query: 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCI 77
R+ ++ + ++NPHL+CVLC GYF++A +I+ECLH S CK+CI
Sbjct: 3 RTTRIKITELNPHLMCVLCGGYFIDAATIIECLH-------------------SFCKTCI 43
Query: 78 VKYIKTSRYCPICDVQLNRQDPFLSLK 104
V+Y++TS+YCPICDVQ+++ P L+++
Sbjct: 44 VRYLETSKYCPICDVQVHKTRPLLNIR 70
>sp|Q7ZYZ7|PCGF1_DANRE Polycomb group RING finger protein 1 OS=Danio rerio GN=pcgf1 PE=3
SV=1
Length = 261
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 21/106 (19%)
Query: 1 MKYNSITYNAIEMRPTSRSD--KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSY 58
M+ + N ++ P + K+ ++D+N H++C LC GYF++AT+I ECLH+
Sbjct: 11 MRLRNQLQNVYKLDPLRNEEEVKIKIKDLNEHIVCYLCAGYFIDATTITECLHT------ 64
Query: 59 FSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDPFLSLK 104
CKSCIVKY++TS+YCP+C+++++ P L+LK
Sbjct: 65 -------------FCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLK 97
>sp|Q9BSM1|PCGF1_HUMAN Polycomb group RING finger protein 1 OS=Homo sapiens GN=PCGF1 PE=1
SV=2
Length = 259
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 19/88 (21%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
++ ++D+N H++C LC GYFV+AT+I ECLH+ CKSCIVKY
Sbjct: 35 RVKIKDLNEHIVCCLCAGYFVDATTITECLHT-------------------FCKSCIVKY 75
Query: 81 IKTSRYCPICDVQLNRQDPFLSLKYSYI 108
++TS+YCP+C+++++ P L+LK +
Sbjct: 76 LQTSKYCPMCNIKIHETQPLLNLKLDRV 103
>sp|Q8R023|PCGF1_MOUSE Polycomb group RING finger protein 1 OS=Mus musculus GN=Pcgf1 PE=2
SV=2
Length = 259
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 19/88 (21%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
++ ++D+N H++C LC GYFV+AT+I ECLH+ CKSCIVKY
Sbjct: 35 RVKIKDLNEHIVCCLCAGYFVDATTITECLHT-------------------FCKSCIVKY 75
Query: 81 IKTSRYCPICDVQLNRQDPFLSLKYSYI 108
++TS+YCP+C+++++ P L+LK +
Sbjct: 76 LQTSKYCPMCNIKIHETQPLLNLKLDRV 103
>sp|Q6DLV9|PCGF1_RAT Polycomb group RING finger protein 1 (Fragment) OS=Rattus
norvegicus GN=Pcgf1 PE=2 SV=1
Length = 243
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 21/110 (19%)
Query: 1 MKYNSITYNAIEMRPTSRSDKLLVR--DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSY 58
M+ + + +M P +++ V+ D+N H++C LC GYFV+AT+I ECLH+
Sbjct: 1 MRLRNQLQSVYKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTITECLHT------ 54
Query: 59 FSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDPFLSLKYSYI 108
CKSCIVKY++TS+YCP+C+++++ P L+LK +
Sbjct: 55 -------------FCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRV 91
>sp|Q4QR06|PCGF1_XENLA Polycomb group RING finger protein 1 OS=Xenopus laevis GN=pcgf1
PE=2 SV=2
Length = 259
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 19/84 (22%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K+ ++++N H++C LC GYF++AT+I ECLH+ CKSCIVKY
Sbjct: 33 KVKIKELNEHIVCYLCAGYFIDATTITECLHT-------------------FCKSCIVKY 73
Query: 81 IKTSRYCPICDVQLNRQDPFLSLK 104
++TS+YCP+C+++++ P L+LK
Sbjct: 74 LQTSKYCPLCNIKIHETQPLLNLK 97
>sp|Q28H21|PCGF1_XENTR Polycomb group RING finger protein 1 OS=Xenopus tropicalis GN=pcgf1
PE=2 SV=1
Length = 259
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 19/84 (22%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K+ ++++N H++C LC GYF++AT+I ECLH+ CKSCIVKY
Sbjct: 33 KVKIKELNEHIVCYLCAGYFIDATTITECLHT-------------------FCKSCIVKY 73
Query: 81 IKTSRYCPICDVQLNRQDPFLSLK 104
++TS+YCP+C+++++ P L+LK
Sbjct: 74 LQTSKYCPLCNIKIHETQPLLNLK 97
>sp|Q2YDF9|PCGF1_BOVIN Polycomb group RING finger protein 1 OS=Bos taurus GN=PCGF1 PE=2
SV=2
Length = 259
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 19/88 (21%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
++ ++D+N H++C LC GYFV+AT+I ECLH + CKSCIVKY
Sbjct: 35 RVKIKDLNEHIVCCLCAGYFVDATTITECLH-------------------TFCKSCIVKY 75
Query: 81 IKTSRYCPICDVQLNRQDPFLSLKYSYI 108
++TS+YCP+C+++++ P L+ K +
Sbjct: 76 LQTSKYCPMCNIKIHETQPLLNHKLDRV 103
>sp|P35820|PSC_DROME Polycomb group protein Psc OS=Drosophila melanogaster GN=Psc PE=1
SV=2
Length = 1601
Score = 73.9 bits (180), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 19/88 (21%)
Query: 12 EMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVS 71
++ TSR +L+ VNPH++C LC+GY + AT+IVECLH S
Sbjct: 242 DLATTSRPRPVLLTAVNPHIICHLCQGYLINATTIVECLH-------------------S 282
Query: 72 VCKSCIVKYIKTSRYCPICDVQLNRQDP 99
C SC++ +++ R+CP C++ +N P
Sbjct: 283 FCHSCLINHLRKERFCPRCEMVINNAKP 310
>sp|B3DK16|PCF5A_DANRE Polycomb group RING finger protein 5-A OS=Danio rerio GN=pcgf5a
PE=2 SV=1
Length = 234
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 19/84 (22%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K LVRD N ++ C +CRGY ++ T++ ECLH + CKSCIV++
Sbjct: 6 KHLVRDFNRYITCSICRGYLIKPTAVTECLH-------------------TFCKSCIVQH 46
Query: 81 IKTSRYCPICDVQLNRQDPFLSLK 104
+ S CP C +Q++ +P L+
Sbjct: 47 FEESNECPECGIQVHETNPLEMLR 70
>sp|A0JN86|PCGF5_BOVIN Polycomb group RING finger protein 5 OS=Bos taurus GN=PCGF5 PE=2
SV=1
Length = 255
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 19/84 (22%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K LV+D NP++ C +C+GY ++ T++ ECLH + CK+CIV++
Sbjct: 6 KHLVKDFNPYITCYICKGYLIKPTTVTECLH-------------------TFCKTCIVQH 46
Query: 81 IKTSRYCPICDVQLNRQDPFLSLK 104
+ S CP C Q++ +P L+
Sbjct: 47 FEDSNDCPRCGNQVHETNPLEMLR 70
>sp|Q3UK78|PCGF5_MOUSE Polycomb group RING finger protein 5 OS=Mus musculus GN=Pcgf5 PE=2
SV=1
Length = 256
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 19/84 (22%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K LV+D NP++ C +C+GY ++ T++ ECLH + CK+CIV++
Sbjct: 6 KHLVKDFNPYITCYICKGYLIKPTTVTECLH-------------------TFCKTCIVQH 46
Query: 81 IKTSRYCPICDVQLNRQDPFLSLK 104
+ S CP C Q++ +P L+
Sbjct: 47 FEDSNDCPRCGNQVHETNPLEMLR 70
>sp|Q86SE9|PCGF5_HUMAN Polycomb group RING finger protein 5 OS=Homo sapiens GN=PCGF5 PE=1
SV=1
Length = 256
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 19/84 (22%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K LV+D NP++ C +C+GY ++ T++ ECLH + CK+CIV++
Sbjct: 6 KHLVKDFNPYITCYICKGYLIKPTTVTECLH-------------------TFCKTCIVQH 46
Query: 81 IKTSRYCPICDVQLNRQDPFLSLK 104
+ S CP C Q++ +P L+
Sbjct: 47 FEDSNDCPRCGNQVHETNPLEMLR 70
>sp|Q07G17|PCGF3_XENTR Polycomb group RING finger protein 3 OS=Xenopus tropicalis GN=pcgf3
PE=2 SV=1
Length = 242
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 19/80 (23%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K+ + D+N H+ C LC GY ++AT++ ECLH + C+SC+VKY
Sbjct: 5 KIKLWDINAHITCRLCNGYLIDATTVTECLH-------------------TFCRSCLVKY 45
Query: 81 IKTSRYCPICDVQLNRQDPF 100
++ + CP C + +++ P
Sbjct: 46 LEENNTCPTCRIVIHQSHPL 65
>sp|Q1JPS1|PCF5B_DANRE Polycomb group RING finger protein 5-B OS=Danio rerio GN=pcgf5b
PE=2 SV=1
Length = 232
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 19/84 (22%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K LVRD N + C +C+GY ++ T++ ECLH + CKSCIV++
Sbjct: 6 KHLVRDFNHFITCFVCKGYLIKPTTVTECLH-------------------TFCKSCIVQH 46
Query: 81 IKTSRYCPICDVQLNRQDPFLSLK 104
+ S CP C +Q++ +P L+
Sbjct: 47 FEDSNDCPKCGIQVHETNPLEMLR 70
>sp|Q3KNV8|PCGF3_HUMAN Polycomb group RING finger protein 3 OS=Homo sapiens GN=PCGF3 PE=1
SV=1
Length = 242
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 19/80 (23%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K+ + D+N H+ C LC GY ++AT++ ECLH + C+SC+VKY
Sbjct: 5 KIKLWDINAHITCRLCSGYLIDATTVTECLH-------------------TFCRSCLVKY 45
Query: 81 IKTSRYCPICDVQLNRQDPF 100
++ + CP C + +++ P
Sbjct: 46 LEENNTCPTCRIVIHQSHPL 65
>sp|Q8BTQ0|PCGF3_MOUSE Polycomb group RING finger protein 3 OS=Mus musculus GN=PcgF3 PE=2
SV=1
Length = 241
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 19/80 (23%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K+ + D+N H+ C LC GY ++AT++ ECLH + C+SC+VKY
Sbjct: 5 KIKLWDINAHITCRLCSGYLIDATTVTECLH-------------------TFCRSCLVKY 45
Query: 81 IKTSRYCPICDVQLNRQDPF 100
++ + CP C + +++ P
Sbjct: 46 LEENNTCPTCRIVIHQSHPL 65
>sp|Q2KJ29|PCGF3_BOVIN Polycomb group RING finger protein 3 OS=Bos taurus GN=PCGF3 PE=2
SV=1
Length = 242
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 19/80 (23%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K+ + D+N H+ C LC GY ++AT++ ECLH + C+SC+VKY
Sbjct: 5 KIKLWDINAHITCRLCSGYLIDATTVTECLH-------------------TFCRSCLVKY 45
Query: 81 IKTSRYCPICDVQLNRQDPF 100
++ + CP C + +++ P
Sbjct: 46 LEENNTCPTCRIVIHQSHPL 65
>sp|Q99NA9|PCGF6_MOUSE Polycomb group RING finger protein 6 OS=Mus musculus GN=Pcgf6 PE=1
SV=1
Length = 353
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 19/79 (24%)
Query: 26 DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSR 85
++ P++LC +C+GY ++AT+I ECLH + CKSCIV++ S
Sbjct: 130 ELTPYILCSICKGYLIDATTITECLH-------------------TFCKSCIVRHFYYSN 170
Query: 86 YCPICDVQLNRQDPFLSLK 104
CP C++ +++ P +++
Sbjct: 171 RCPKCNIVVHQTQPLYNIR 189
>sp|Q9BYE7|PCGF6_HUMAN Polycomb group RING finger protein 6 OS=Homo sapiens GN=PCGF6 PE=1
SV=2
Length = 350
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 19/79 (24%)
Query: 26 DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSR 85
++ P++LC +C+GY ++AT+I ECLH + CKSCIV++ S
Sbjct: 127 ELTPYILCSICKGYLIDATTITECLH-------------------TFCKSCIVRHFYYSN 167
Query: 86 YCPICDVQLNRQDPFLSLK 104
CP C++ +++ P +++
Sbjct: 168 RCPKCNIVVHQTQPLYNIR 186
>sp|Q5XI70|PCGF6_RAT Polycomb group RING finger protein 6 OS=Rattus norvegicus GN=Pcgf6
PE=2 SV=1
Length = 351
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 19/79 (24%)
Query: 26 DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSR 85
++ P++LC +C+GY ++AT+I ECLH + CKSCIV++ S
Sbjct: 128 ELTPYILCSICKGYLIDATTITECLH-------------------TFCKSCIVRHFYYSN 168
Query: 86 YCPICDVQLNRQDPFLSLK 104
CP C++ +++ P +++
Sbjct: 169 RCPKCNIVVHQTQPLYNIR 187
>sp|P25172|SUZ2_DROME Protein suppressor 2 of zeste OS=Drosophila melanogaster GN=Su(z)2
PE=2 SV=2
Length = 1368
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 25/104 (24%)
Query: 3 YNSITYNAI--EMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFS 60
+N++ NA P SR VR + + C LCRGY ++ T++ C H
Sbjct: 7 HNTMESNAAMDAASPASRD----VRQFHDLITCRLCRGYMIDPTTVDYCYH--------- 53
Query: 61 HFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDPFLSLK 104
+ C+SCI+K++ + YCP C ++ L+LK
Sbjct: 54 ----------TYCRSCILKHLLRAVYCPECKASGGKEINELNLK 87
>sp|Q9LS86|DRIPH_ARATH Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis
thaliana GN=At3g23060 PE=2 SV=1
Length = 480
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 21/77 (27%)
Query: 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKY 80
K+L ++V P L C +C F +AT+I ECLH + C+SCI
Sbjct: 4 KVLSKEVKPCLACPICTNPFKDATTISECLH-------------------TFCRSCIRNK 44
Query: 81 IKTSR--YCPICDVQLN 95
R CP+C+V L
Sbjct: 45 FINERVNACPVCNVNLG 61
>sp|C4LI04|LIPA_CORK4 Lipoyl synthase OS=Corynebacterium kroppenstedtii (strain DSM 44385
/ CCUG 35717) GN=lipA PE=3 SV=1
Length = 347
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 22/90 (24%)
Query: 84 SRYCPICDVQLNRQDPFLSLKYSYIAFASDDYDNDTRIYEQVLQIVLRIYLRKNVLRGTI 143
SR C CD++ R +P D D R+ E V +I LR TI
Sbjct: 82 SRRCDFCDIKSGRPEPL-------------DEDEPRRVAENVREIGLRYS--------TI 120
Query: 144 HQLTRCFVRNVW-WFYISIVIMFHRYHPST 172
+TR + + W Y +V H+ +P+T
Sbjct: 121 TGVTRDDLPDEGAWLYAEVVRQIHKLNPNT 150
>sp|Q8N1G0|ZN687_HUMAN Zinc finger protein 687 OS=Homo sapiens GN=ZNF687 PE=1 SV=1
Length = 1237
Score = 35.0 bits (79), Expect = 0.23, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 29 PHLLCVLCRGYFVEA---TSIVE-CLHSCDFVSYFSHFCKLLFGFVSVCKSCI-VKYIKT 83
PH+ C C G F++A T + E CLH V Y C ++FG V+ KS I + +
Sbjct: 732 PHV-CPECGGNFLQANFQTHLREACLHVSRRVGYRCPSCSVVFGGVNSIKSHIQTSHCEV 790
Query: 84 SRYCPIC 90
CPIC
Sbjct: 791 FHKCPIC 797
>sp|Q9D2D7|ZN687_MOUSE Zinc finger protein 687 OS=Mus musculus GN=Znf687 PE=2 SV=1
Length = 1237
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 29 PHLLCVLCRGYFVEA---TSIVE-CLHSCDFVSYFSHFCKLLFGFVSVCKSCI-VKYIKT 83
PH+ C C G F++A T + E CLH V Y C ++FG V+ KS I + +
Sbjct: 732 PHV-CPECGGNFLQANFQTHLREACLHFSRRVGYRCPSCAVVFGGVNSIKSHIQASHCEV 790
Query: 84 SRYCPIC 90
CPIC
Sbjct: 791 FHKCPIC 797
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 75 SCIVKYIKTSRYCPICDVQLNRQDPFLSLKYSYIAFASDDYDNDTRIYEQ 124
SCIV +++ CP+C LN +D + S A AS+ + ND++++++
Sbjct: 254 SCIVPWLELHDTCPVCRKSLNGEDSTRQTQSSE-ASASNRFSNDSQLHDR 302
>sp|Q94AY3|DRIP2_ARATH E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana GN=DRIP2
PE=1 SV=1
Length = 420
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 22/80 (27%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS--RYCP 88
+ C LC +AT+I ECLH + C+ CI + I CP
Sbjct: 18 MTCPLCDKLLRDATTISECLH-------------------TFCRKCIYEKITEDEIESCP 58
Query: 89 ICDVQLNRQDPFLSLKYSYI 108
+CD+ L P L+ +I
Sbjct: 59 VCDIDLG-GTPLEKLRPDHI 77
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 33.5 bits (75), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 75 SCIVKYIKTSRYCPICDVQLNRQDPFLSLKYSYIAFASDDYDNDTRIYEQ 124
SCIV +++ CP+C LN +D S A AS+ + ND++++++
Sbjct: 253 SCIVPWLELHDTCPVCRKSLNGED-STRQSQSTEASASNRFSNDSQLHDR 301
>sp|Q7SEY9|ERO1_NEUCR Endoplasmic oxidoreductin-1 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ero-1 PE=3 SV=1
Length = 668
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
Query: 113 DDYDNDTRIYEQVLQIVLRIYLRKNVLRGTIHQLTRCFVRNVWWFYISIVIM-----FHR 167
DD++N+ R ++V+R YL L I+++T ++ W FY+ + +M F R
Sbjct: 606 DDFENEFRAVFAAFKLVIRSYLN---LPALIYEITITELKRFWQFYVGLPVMPRTWEFRR 662
Query: 168 YHPSTD 173
PS D
Sbjct: 663 --PSLD 666
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 22/89 (24%)
Query: 2 KYNSITYNAIEMRPTSRSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSH 61
K N+I I ++ SR L + N L C +C G VE +I++C H YF
Sbjct: 1210 KINNIESRLIYLKNLSRLKDTL--NDNQILSCSICLGE-VEIGAIIKCGH------YF-- 1258
Query: 62 FCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
CKSCI+ +++ CPIC
Sbjct: 1259 -----------CKSCILTWLRAHSKCPIC 1276
>sp|Q7ZX20|RNF8A_XENLA E3 ubiquitin-protein ligase RNF8-A OS=Xenopus laevis GN=rnf8-a PE=2
SV=1
Length = 540
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 20/60 (33%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
L C++C +F+EA ++ C HS C CI + K CPIC
Sbjct: 380 LQCIICSEHFIEAVTL-NCAHS-------------------FCSYCIKSWKKRKEECPIC 419
>sp|Q3TYX8|RUFY4_MOUSE RUN and FYVE domain-containing protein 4 OS=Mus musculus GN=Rufy4
PE=2 SV=3
Length = 563
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 63 CKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQD 98
C+L G V C +C V Y K R CP C Q QD
Sbjct: 529 CRLCGGLV--CHACSVDYKKRERCCPTCAQQEEIQD 562
>sp|Q6NRG0|RNF8B_XENLA E3 ubiquitin-protein ligase RNF8-B OS=Xenopus laevis GN=rnf8-b PE=2
SV=1
Length = 532
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 20/60 (33%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
L C++C +F+EA ++ C HS C CI + K CPIC
Sbjct: 375 LQCIICSEHFIEAVTL-NCAHS-------------------FCSYCIKSWRKRKEECPIC 414
>sp|Q2HJ46|RNF8_BOVIN E3 ubiquitin-protein ligase RNF8 OS=Bos taurus GN=RNF8 PE=2 SV=1
Length = 487
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 20/61 (32%)
Query: 30 HLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPI 89
L C++C YFVEA ++ C HS F SY CI +++K CPI
Sbjct: 402 ELQCIICSEYFVEAVTL-NCAHS--FCSY-----------------CINEWMKRKVECPI 441
Query: 90 C 90
C
Sbjct: 442 C 442
>sp|P08973|YCF2_SPIOL Protein ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2
Length = 2131
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 65 LLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDPFLSLK-YSYIAFASDDYDNDTRIYE 123
L+ G + +S +VKY+ T+ Y P V LN+ FL K + ASDD D D
Sbjct: 1481 LVIGSIGTGRSYLVKYLATNSYVPFITVFLNK---FLDNKPKGSLIDASDDIDRDLDTEL 1537
Query: 124 QVLQIV 129
++L ++
Sbjct: 1538 ELLTMM 1543
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 20/68 (29%)
Query: 31 LLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90
L C +C + A S+ SC+ V C +CIVK +K CP+C
Sbjct: 14 LKCPICLSLYNSAVSL-----SCNHV---------------FCNACIVKSMKMDATCPVC 53
Query: 91 DVQLNRQD 98
+ +R++
Sbjct: 54 KIPYHRRE 61
>sp|O76064|RNF8_HUMAN E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1
Length = 485
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 20/61 (32%)
Query: 30 HLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPI 89
L C++C YF+EA ++ C HS F SY CI +++K CPI
Sbjct: 400 ELQCIICSEYFIEAVTL-NCAHS--FCSY-----------------CINEWMKRKIECPI 439
Query: 90 C 90
C
Sbjct: 440 C 440
>sp|Q5R4I2|RNF8_PONAB E3 ubiquitin-protein ligase RNF8 OS=Pongo abelii GN=RNF8 PE=2 SV=1
Length = 486
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 20/61 (32%)
Query: 30 HLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPI 89
L C++C YF+EA ++ C HS F SY CI +++K CPI
Sbjct: 401 ELQCIICSEYFIEAVTL-NCAHS--FCSY-----------------CINEWMKRKIECPI 440
Query: 90 C 90
C
Sbjct: 441 C 441
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.143 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,060,314
Number of Sequences: 539616
Number of extensions: 2152479
Number of successful extensions: 5926
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 5837
Number of HSP's gapped (non-prelim): 94
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 57 (26.6 bits)