Query psy8987
Match_columns 173
No_of_seqs 147 out of 1082
Neff 3.1
Searched_HMMs 29240
Date Sat Aug 17 00:48:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckl_A Polycomb group ring fin 99.6 1.3E-16 4.4E-21 114.6 4.1 95 18-143 3-97 (108)
2 2djb_A Polycomb group ring fin 99.5 1.1E-14 3.7E-19 97.8 3.3 64 22-104 7-70 (72)
3 1t1h_A Gspef-atpub14, armadill 99.4 1.7E-13 5.8E-18 92.5 2.6 57 26-102 4-61 (78)
4 3lrq_A E3 ubiquitin-protein li 99.4 1E-13 3.5E-18 99.2 1.2 61 19-98 11-72 (100)
5 2egp_A Tripartite motif-contai 99.3 3.2E-13 1.1E-17 90.6 2.6 63 24-106 6-75 (79)
6 2y43_A E3 ubiquitin-protein li 99.3 1.8E-13 6.1E-18 96.5 1.0 58 21-97 13-70 (99)
7 2ecy_A TNF receptor-associated 99.3 1.2E-12 4.1E-17 86.3 4.4 57 22-98 7-64 (66)
8 3ztg_A E3 ubiquitin-protein li 99.3 8.6E-13 2.9E-17 91.5 3.7 52 25-95 8-61 (92)
9 2ckl_B Ubiquitin ligase protei 99.3 6E-13 2E-17 101.6 3.1 57 21-96 45-102 (165)
10 2ecw_A Tripartite motif-contai 99.3 8.9E-13 3.1E-17 88.4 3.1 65 23-107 12-82 (85)
11 2kre_A Ubiquitin conjugation f 99.3 7.3E-13 2.5E-17 96.5 2.8 56 22-97 21-76 (100)
12 3fl2_A E3 ubiquitin-protein li 99.3 6.2E-13 2.1E-17 97.3 2.4 75 23-132 45-120 (124)
13 2ecv_A Tripartite motif-contai 99.3 1.2E-12 4.1E-17 87.8 3.5 65 23-107 12-82 (85)
14 2kr4_A Ubiquitin conjugation f 99.3 3.6E-13 1.2E-17 94.9 0.9 56 22-97 6-61 (85)
15 3l11_A E3 ubiquitin-protein li 99.3 3.2E-13 1.1E-17 97.5 0.3 81 25-134 10-91 (115)
16 1wgm_A Ubiquitin conjugation f 99.3 9.7E-13 3.3E-17 95.6 2.8 56 22-97 14-70 (98)
17 2yur_A Retinoblastoma-binding 99.3 1.1E-12 3.7E-17 88.9 2.5 57 22-97 7-65 (74)
18 1jm7_B BARD1, BRCA1-associated 99.3 6.2E-13 2.1E-17 97.0 0.5 61 21-102 13-73 (117)
19 4ayc_A E3 ubiquitin-protein li 99.2 7.6E-13 2.6E-17 99.1 -0.1 50 27-96 50-99 (138)
20 2ysl_A Tripartite motif-contai 99.2 5.8E-12 2E-16 83.5 3.9 55 23-97 13-70 (73)
21 1jm7_A BRCA1, breast cancer ty 99.2 9.9E-12 3.4E-16 88.1 4.2 64 23-106 14-80 (112)
22 2ea6_A Ring finger protein 4; 99.2 8.1E-12 2.8E-16 81.3 3.0 54 24-96 9-68 (69)
23 2ysj_A Tripartite motif-contai 99.2 1.1E-11 3.8E-16 80.7 3.3 49 22-90 12-63 (63)
24 3ng2_A RNF4, snurf, ring finge 99.2 1.6E-11 5.4E-16 80.8 3.2 53 27-98 7-65 (71)
25 2c2l_A CHIP, carboxy terminus 99.1 4.3E-12 1.5E-16 100.5 0.5 52 26-97 204-256 (281)
26 1z6u_A NP95-like ring finger p 99.1 7.9E-12 2.7E-16 96.2 1.9 74 23-131 71-145 (150)
27 1g25_A CDK-activating kinase a 99.1 2.8E-11 9.5E-16 79.5 3.7 52 29-99 2-58 (65)
28 2xeu_A Ring finger protein 4; 99.1 1.7E-11 6E-16 78.7 2.5 51 29-98 2-58 (64)
29 3knv_A TNF receptor-associated 99.1 2.1E-11 7E-16 93.2 3.3 56 20-95 21-77 (141)
30 3hct_A TNF receptor-associated 99.1 6.7E-12 2.3E-16 91.6 0.4 55 23-97 11-66 (118)
31 2yu4_A E3 SUMO-protein ligase 99.1 4.8E-12 1.6E-16 90.2 -0.5 52 26-96 3-63 (94)
32 2csy_A Zinc finger protein 183 99.1 2E-11 6.8E-16 83.2 2.4 50 26-95 11-60 (81)
33 2ecj_A Tripartite motif-contai 99.1 5.9E-11 2E-15 75.3 3.5 48 23-90 8-58 (58)
34 2ct2_A Tripartite motif protei 99.1 4.2E-11 1.4E-15 81.4 2.8 56 22-97 7-69 (88)
35 2ect_A Ring finger protein 126 99.1 5.2E-11 1.8E-15 80.2 3.0 58 25-101 10-69 (78)
36 1rmd_A RAG1; V(D)J recombinati 99.1 1.9E-11 6.5E-16 88.3 0.2 55 24-98 17-72 (116)
37 2ep4_A Ring finger protein 24; 99.1 7.1E-11 2.4E-15 78.8 3.0 57 22-97 7-65 (74)
38 2ecn_A Ring finger protein 141 99.0 5.1E-11 1.7E-15 78.8 2.2 54 24-98 9-62 (70)
39 3htk_C E3 SUMO-protein ligase 99.0 5.8E-11 2E-15 102.0 3.0 60 19-97 170-233 (267)
40 2d8t_A Dactylidin, ring finger 99.0 8.1E-11 2.8E-15 78.6 2.5 50 27-96 12-61 (71)
41 2kiz_A E3 ubiquitin-protein li 99.0 1.4E-10 4.7E-15 76.5 3.1 56 26-100 10-67 (69)
42 3hcs_A TNF receptor-associated 99.0 3.9E-11 1.3E-15 91.7 0.2 55 23-97 11-66 (170)
43 1chc_A Equine herpes virus-1 r 99.0 7E-11 2.4E-15 77.5 1.2 49 28-95 3-51 (68)
44 4ap4_A E3 ubiquitin ligase RNF 99.0 2E-10 6.9E-15 82.1 3.3 52 28-98 5-62 (133)
45 1iym_A EL5; ring-H2 finger, ub 99.0 1.6E-10 5.6E-15 73.0 2.3 49 27-94 2-53 (55)
46 2f42_A STIP1 homology and U-bo 98.9 1.5E-10 5.2E-15 93.4 1.1 53 25-97 101-154 (179)
47 1bor_A Transcription factor PM 98.9 3.9E-10 1.3E-14 73.3 1.3 46 28-96 4-49 (56)
48 2ecm_A Ring finger and CHY zin 98.9 5.1E-10 1.8E-14 70.5 1.5 48 29-95 4-54 (55)
49 1x4j_A Ring finger protein 38; 98.9 6.7E-10 2.3E-14 74.6 1.9 51 27-96 20-72 (75)
50 1v87_A Deltex protein 2; ring- 98.8 2.4E-09 8.1E-14 76.6 3.5 50 28-96 23-94 (114)
51 2l0b_A E3 ubiquitin-protein li 98.8 2.3E-09 7.9E-14 75.3 2.8 49 27-95 37-88 (91)
52 4ap4_A E3 ubiquitin ligase RNF 98.8 1.5E-09 5.1E-14 77.5 1.4 52 28-98 70-127 (133)
53 2ecl_A Ring-box protein 2; RNF 98.8 3.2E-09 1.1E-13 73.5 2.8 49 29-96 14-76 (81)
54 1e4u_A Transcriptional repress 98.7 5.7E-09 1.9E-13 73.2 3.9 54 25-97 6-63 (78)
55 4ic3_A E3 ubiquitin-protein li 98.6 7.4E-09 2.5E-13 70.6 0.2 53 21-96 15-67 (74)
56 2bay_A PRE-mRNA splicing facto 98.5 1E-08 3.5E-13 69.1 0.2 51 30-99 3-53 (61)
57 2ecg_A Baculoviral IAP repeat- 98.4 6.3E-08 2.1E-12 65.8 2.1 53 21-96 16-68 (75)
58 3dpl_R Ring-box protein 1; ubi 98.4 8E-08 2.7E-12 71.0 2.7 48 29-95 36-100 (106)
59 2y1n_A E3 ubiquitin-protein li 98.4 1.3E-07 4.6E-12 84.3 2.7 51 27-97 329-380 (389)
60 1wim_A KIAA0161 protein; ring 98.3 1.6E-07 5.5E-12 65.8 1.6 46 29-93 4-61 (94)
61 2vje_A E3 ubiquitin-protein li 98.3 1.8E-07 6.1E-12 62.5 1.5 50 28-95 6-56 (64)
62 2vje_B MDM4 protein; proto-onc 98.3 2.1E-07 7.3E-12 62.0 1.4 49 28-95 5-55 (63)
63 4a0k_B E3 ubiquitin-protein li 98.2 1.5E-07 5.2E-12 71.3 0.2 47 30-95 48-111 (117)
64 2yho_A E3 ubiquitin-protein li 98.1 3.1E-07 1.1E-11 63.9 -0.0 51 23-96 11-61 (79)
65 3t6p_A Baculoviral IAP repeat- 98.1 2.7E-07 9.1E-12 80.3 -0.5 51 23-96 288-338 (345)
66 2d8s_A Cellular modulator of i 97.8 8.3E-06 2.8E-10 57.4 2.3 50 28-97 13-71 (80)
67 2ct0_A Non-SMC element 1 homol 97.7 2.4E-05 8.2E-10 55.1 3.7 50 29-97 14-65 (74)
68 2ea5_A Cell growth regulator w 97.6 1.9E-05 6.6E-10 53.5 2.0 46 28-96 13-58 (68)
69 3vk6_A E3 ubiquitin-protein li 96.9 0.00035 1.2E-08 52.9 2.0 73 32-126 3-82 (101)
70 2jun_A Midline-1; B-BOX, TRIM, 95.9 0.0031 1.1E-07 44.1 1.8 34 29-81 2-37 (101)
71 1vyx_A ORF K3, K3RING; zinc-bi 95.6 0.0074 2.5E-07 40.2 2.6 53 28-95 4-58 (60)
72 3k1l_B Fancl; UBC, ring, RWD, 95.2 0.0034 1.2E-07 56.6 0.1 49 28-95 306-372 (381)
73 3nw0_A Non-structural maintena 94.0 0.031 1.1E-06 46.1 3.1 52 29-99 179-232 (238)
74 3m62_A Ubiquitin conjugation f 89.5 0.28 9.7E-06 48.5 4.4 55 23-97 884-939 (968)
75 2ko5_A Ring finger protein Z; 86.2 0.22 7.4E-06 37.7 1.0 49 27-97 25-74 (99)
76 4fo9_A E3 SUMO-protein ligase 68.3 1.3 4.6E-05 39.3 0.7 53 26-95 211-265 (360)
77 1weo_A Cellulose synthase, cat 66.6 4.3 0.00015 30.3 3.0 26 72-97 45-71 (93)
78 3i2d_A E3 SUMO-protein ligase 65.1 1.6 5.4E-05 39.0 0.5 57 22-95 241-299 (371)
79 2cs3_A Protein C14ORF4, MY039 64.8 3.4 0.00012 30.7 2.2 47 28-90 13-64 (93)
80 2jrp_A Putative cytoplasmic pr 42.8 1.5 5E-05 31.8 -2.9 23 72-95 20-42 (81)
81 3ech_C 25-MER fragment of prot 38.9 17 0.00058 21.2 1.8 19 140-158 2-20 (25)
82 3mjh_B Early endosome antigen 31.3 11 0.00039 23.0 0.2 17 30-46 5-21 (34)
83 2jne_A Hypothetical protein YF 29.8 3.3 0.00011 31.3 -2.9 49 22-95 24-72 (101)
84 1z60_A TFIIH basal transcripti 29.8 33 0.0011 23.1 2.4 42 30-90 15-58 (59)
85 1yku_A Hypothetical protein PX 28.5 44 0.0015 26.2 3.2 38 123-161 44-81 (136)
86 1l8d_A DNA double-strand break 25.3 83 0.0028 21.9 4.0 12 84-95 47-58 (112)
87 2o35_A Hypothetical protein DU 25.0 24 0.0008 26.8 1.0 14 70-83 41-54 (105)
88 2lcq_A Putative toxin VAPC6; P 24.5 6.1 0.00021 29.8 -2.3 26 71-96 133-160 (165)
89 2apo_B Ribosome biogenesis pro 24.5 12 0.0004 25.6 -0.7 29 69-99 5-33 (60)
90 3fyb_A Protein of unknown func 24.5 24 0.00083 26.7 1.0 30 119-148 65-94 (104)
91 2x4w_B Histone H3.2; transcrip 20.6 26 0.00089 18.9 0.4 8 165-172 17-24 (26)
92 1m3v_A FLIN4, fusion of the LI 20.6 46 0.0016 23.5 1.8 26 71-96 56-81 (122)
93 1wd2_A Ariadne-1 protein homol 20.2 43 0.0015 22.1 1.4 16 84-99 6-21 (60)
No 1
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.63 E-value=1.3e-16 Score=114.56 Aligned_cols=95 Identities=43% Similarity=1.011 Sum_probs=77.4
Q ss_pred ccchhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCC
Q psy8987 18 RSDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQ 97 (173)
Q Consensus 18 r~~~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~ 97 (173)
|+.++.++++.+++.|+||.+.|.+|++++.|||+ ||+.||.+|++.+..||.|+..+...
T Consensus 3 r~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-------------------fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 3 RTTRIKITELNPHLMCVLCGGYFIDATTIIECLHS-------------------FCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp ---CEEHHHHGGGTBCTTTSSBCSSEEEETTTCCE-------------------EEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cccccchhccCCcCCCccCChHHhCcCEeCCCCCh-------------------hhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34567778899999999999999999987799999 99999999999999999999998876
Q ss_pred CCcccccccchhcccCCCCchHHHHHHHHHHHHHHHHHhhhhchhh
Q psy8987 98 DPFLSLKYSYIAFASDDYDNDTRIYEQVLQIVLRIYLRKNVLRGTI 143 (173)
Q Consensus 98 ~p~~slk~~~~a~~s~~y~~d~~~qe~VykLvp~ly~re~~~rg~~ 143 (173)
.|..++..+ ..+++++.+++++...+|...++++
T Consensus 64 ~~~~~l~~n------------~~l~~~i~~~~~~~~~~e~~~~~~~ 97 (108)
T 2ckl_A 64 RPLLNIRSD------------KTLQDIVYKLVPGLFKNEMKRRRDF 97 (108)
T ss_dssp CGGGGEEEC------------HHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred CcccccCcC------------HHHHHHHHHHhhhHHHHHHHhHHHH
Confidence 665555554 4588888889888877776665543
No 2
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=97.84 Aligned_cols=64 Identities=38% Similarity=0.914 Sum_probs=57.0
Q ss_pred hhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCCCcc
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDPFL 101 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~p~~ 101 (173)
..++++.+++.|+||.+.+.+|++++.|+|+ ||+.||.+|++.+..||.|+..+...++..
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-------------------fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHT-------------------FCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCE-------------------ECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCH-------------------HHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 4456788899999999999999987799999 999999999999999999999998887776
Q ss_pred ccc
Q psy8987 102 SLK 104 (173)
Q Consensus 102 slk 104 (173)
+++
T Consensus 68 ~~~ 70 (72)
T 2djb_A 68 GPS 70 (72)
T ss_dssp CCS
T ss_pred cCC
Confidence 654
No 3
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=1.7e-13 Score=92.50 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=49.0
Q ss_pred ccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC-CCCCCcccccccCCCCccc
Q psy8987 26 DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-SRYCPICDVQLNRQDPFLS 102 (173)
Q Consensus 26 ~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-s~~CP~C~~~l~~~~p~~s 102 (173)
++.+++.|+||.++|.+|+++ .|||+ ||+.||.+|++. +..||.|+..+...+...|
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~-~CgH~-------------------fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n 61 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIV-STGQT-------------------YERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEE-TTTEE-------------------EEHHHHHHHHTTTCCBCTTTCCBCSSCCCEEC
T ss_pred CCcccCCCCCccccccCCEEc-CCCCe-------------------ecHHHHHHHHHHCcCCCCCCcCCCChhhCccC
Confidence 467889999999999999875 89999 999999999997 7889999998875543333
No 4
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=1e-13 Score=99.15 Aligned_cols=61 Identities=23% Similarity=0.551 Sum_probs=53.3
Q ss_pred cchhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC-CCCCcccccccCC
Q psy8987 19 SDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS-RYCPICDVQLNRQ 97 (173)
Q Consensus 19 ~~~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s-~~CP~C~~~l~~~ 97 (173)
........+.+.+.|+||.++|.+|++++.|||+ ||+.||.+|++.+ ..||.|+..+...
T Consensus 11 ~~~~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~-------------------FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 11 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKL-------------------CCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHHHHHHHHHHTBCTTTCSBCSSEEECTTTCCE-------------------EEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CcccccccCCCCCCCccCCccccCccccCCCCCh-------------------hhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 3455677889999999999999999986799999 9999999999987 6999999988644
Q ss_pred C
Q psy8987 98 D 98 (173)
Q Consensus 98 ~ 98 (173)
+
T Consensus 72 ~ 72 (100)
T 3lrq_A 72 E 72 (100)
T ss_dssp G
T ss_pred H
Confidence 3
No 5
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.34 E-value=3.2e-13 Score=90.56 Aligned_cols=63 Identities=24% Similarity=0.590 Sum_probs=52.6
Q ss_pred hhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC-------CCCCCcccccccC
Q psy8987 24 VRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-------SRYCPICDVQLNR 96 (173)
Q Consensus 24 v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-------s~~CP~C~~~l~~ 96 (173)
++++.+.+.|+||.+.|.+|++ +.|||+ ||+.||.+|++. ...||.|+..+..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~-l~CgH~-------------------fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLS-LDCGHS-------------------LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCC-CSSSCC-------------------CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeE-CCCCCH-------------------HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4567889999999999999987 599999 999999999987 6789999999876
Q ss_pred CCCccccccc
Q psy8987 97 QDPFLSLKYS 106 (173)
Q Consensus 97 ~~p~~slk~~ 106 (173)
.+...|..+.
T Consensus 66 ~~l~~n~~l~ 75 (79)
T 2egp_A 66 EHLQANQHLA 75 (79)
T ss_dssp SGGGTCSSSC
T ss_pred hhCCcCHHHH
Confidence 5544454444
No 6
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.8e-13 Score=96.54 Aligned_cols=58 Identities=29% Similarity=0.678 Sum_probs=51.5
Q ss_pred hhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCC
Q psy8987 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQ 97 (173)
Q Consensus 21 ~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~ 97 (173)
...++++.+.+.|+||.+.|.+|+.++.|||+ ||+.||.+|+..+..||.|+..+...
T Consensus 13 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-------------------fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 13 LAVMKTIDDLLRCGICFEYFNIAMIIPQCSHN-------------------YCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp GGGGHHHHHHTBCTTTCSBCSSEEECTTTCCE-------------------EEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred hhHHHhCCCCCCcccCChhhCCcCEECCCCCH-------------------hhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 34566778899999999999999887799999 99999999999999999999988753
No 7
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=86.28 Aligned_cols=57 Identities=23% Similarity=0.572 Sum_probs=49.1
Q ss_pred hhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhc-CCCCCCcccccccCCC
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIK-TSRYCPICDVQLNRQD 98 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~-~s~~CP~C~~~l~~~~ 98 (173)
..+..+.+.+.|+||.+.+.+|+. +.|||+ ||+.||.+|++ ....||+|+..+...+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 7 GFVKTVEDKYKCEKCHLVLCSPKQ-TECGHR-------------------FCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CSCCSCCCCEECTTTCCEESSCCC-CSSSCC-------------------CCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred hhhhcCCcCCCCCCCChHhcCeeE-CCCCCH-------------------HHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 344567889999999999999997 599999 99999999994 5678999999887554
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.31 E-value=8.6e-13 Score=91.46 Aligned_cols=52 Identities=29% Similarity=0.650 Sum_probs=44.9
Q ss_pred hccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC--CCCCccccccc
Q psy8987 25 RDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS--RYCPICDVQLN 95 (173)
Q Consensus 25 ~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s--~~CP~C~~~l~ 95 (173)
.++.+++.|+||.++|.+|+++..|||+ ||+.||.+|+..+ ..||.|+..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-------------------fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNS-------------------YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCE-------------------ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCH-------------------HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3678899999999999999976339999 9999999999753 68999998763
No 9
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.31 E-value=6e-13 Score=101.62 Aligned_cols=57 Identities=26% Similarity=0.738 Sum_probs=47.8
Q ss_pred hhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC-CCCCCcccccccC
Q psy8987 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-SRYCPICDVQLNR 96 (173)
Q Consensus 21 ~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-s~~CP~C~~~l~~ 96 (173)
....+++.+.+.|+||.+.|.+|+.++.|||+ ||+.||.+|++. ...||.|+..+..
T Consensus 45 ~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 45 VVSPRSLHSELMCPICLDMLKNTMTTKECLHR-------------------FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp C----CCHHHHBCTTTSSBCSSEEEETTTCCE-------------------EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred ccchhhCCCCCCCcccChHhhCcCEeCCCCCh-------------------hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34456677889999999999999987799999 999999999997 7889999998853
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=8.9e-13 Score=88.44 Aligned_cols=65 Identities=23% Similarity=0.561 Sum_probs=53.9
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC------CCCCCcccccccC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT------SRYCPICDVQLNR 96 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~------s~~CP~C~~~l~~ 96 (173)
..+++.+.+.|+||.+.+.+|+. +.|+|+ ||..||.+|+.. ...||.|+..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~-------------------fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVS-ADCNHS-------------------FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEE-CTTSCC-------------------BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHhCccCCCCcCCChhhCccee-CCCCCH-------------------HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 45567889999999999999985 589999 999999999987 6789999999886
Q ss_pred CCCcccccccc
Q psy8987 97 QDPFLSLKYSY 107 (173)
Q Consensus 97 ~~p~~slk~~~ 107 (173)
.+...|..+++
T Consensus 72 ~~~~~n~~l~~ 82 (85)
T 2ecw_A 72 GNLKPNLHVAN 82 (85)
T ss_dssp TCCEECSCCCS
T ss_pred HhCCcCHHHHH
Confidence 65555554443
No 11
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.30 E-value=7.3e-13 Score=96.54 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=49.9
Q ss_pred hhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCC
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQ 97 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~ 97 (173)
....++.++++|+||.++|.||+++ .|||+ ||++||.+|+.....||.|+..+...
T Consensus 21 ~~~~~~p~~~~CpI~~~~m~dPV~~-~cGht-------------------f~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 21 IDYSDAPDEFRDPLMDTLMTDPVRL-PSGTI-------------------MDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSCSSCSTTTBCTTTCSBCSSEEEE-TTTEE-------------------EEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred hhhccCcHhhCCcCccCcccCCeEC-CCCCE-------------------EchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4556778899999999999999975 79999 99999999999889999999988644
No 12
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.30 E-value=6.2e-13 Score=97.34 Aligned_cols=75 Identities=20% Similarity=0.532 Sum_probs=58.5
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC-CCCCcccccccCCCCcc
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS-RYCPICDVQLNRQDPFL 101 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s-~~CP~C~~~l~~~~p~~ 101 (173)
.+..+.+++.|+||.++|.+|+++ .|||+ ||+.||.+|+... ..||.|+..+....
T Consensus 45 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~--- 101 (124)
T 3fl2_A 45 FLSKVEETFQCICCQELVFRPITT-VCQHN-------------------VCKDCLDRSFRAQVFSCPACRYDLGRSY--- 101 (124)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEEC-TTSCE-------------------EEHHHHHHHHHTTCCBCTTTCCBCCTTC---
T ss_pred HHHhCccCCCCCcCChHHcCcEEe-eCCCc-------------------ccHHHHHHHHhHCcCCCCCCCccCCCCC---
Confidence 456778889999999999999975 99999 9999999999864 58999999887421
Q ss_pred cccccchhcccCCCCchHHHHHHHHHHHHHH
Q psy8987 102 SLKYSYIAFASDDYDNDTRIYEQVLQIVLRI 132 (173)
Q Consensus 102 slk~~~~a~~s~~y~~d~~~qe~VykLvp~l 132 (173)
.++.+ ..+++++.+++|+.
T Consensus 102 ~~~~n------------~~l~~~i~~~~p~~ 120 (124)
T 3fl2_A 102 AMQVN------------QPLQTVLNQLFPGY 120 (124)
T ss_dssp CCCCC------------HHHHHHHHHHSTTT
T ss_pred CCCCC------------HHHHHHHHHHcccc
Confidence 22222 35677777777753
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=87.82 Aligned_cols=65 Identities=20% Similarity=0.576 Sum_probs=54.9
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC------CCCCCcccccccC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT------SRYCPICDVQLNR 96 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~------s~~CP~C~~~l~~ 96 (173)
.++++.+.+.|+||.+.+.+|+.+ .|+|+ ||+.||.+|+.. ...||.|+..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~-------------------fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSL-DCGHS-------------------FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCC-SSSCC-------------------BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHccCCCCCCCCCcccCCceeC-CCCCH-------------------HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345778899999999999999874 99999 999999999887 7899999999987
Q ss_pred CCCcccccccc
Q psy8987 97 QDPFLSLKYSY 107 (173)
Q Consensus 97 ~~p~~slk~~~ 107 (173)
.+...|..+++
T Consensus 72 ~~~~~n~~l~~ 82 (85)
T 2ecv_A 72 ENIRPNRHVAN 82 (85)
T ss_dssp SSCCCSCCCCC
T ss_pred HhcCccHHHHH
Confidence 66555655554
No 14
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.29 E-value=3.6e-13 Score=94.88 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=49.3
Q ss_pred hhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCC
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQ 97 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~ 97 (173)
..+.++.+++.|+||.++|.||+++ .|||+ ||++||.+|+.....||.|+..+...
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~-~cGht-------------------f~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRL-PSGTV-------------------MDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEEC-TTSCE-------------------EEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hhhhcCchheECcccCchhcCCeEC-CCCCE-------------------ECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 3455678899999999999999975 79999 99999999999889999999887643
No 15
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.29 E-value=3.2e-13 Score=97.47 Aligned_cols=81 Identities=17% Similarity=0.406 Sum_probs=59.8
Q ss_pred hccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC-CCCCCcccccccCCCCcccc
Q psy8987 25 RDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-SRYCPICDVQLNRQDPFLSL 103 (173)
Q Consensus 25 ~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-s~~CP~C~~~l~~~~p~~sl 103 (173)
....+++.|+||.++|.+|+++ .|||+ ||..||.+|++. ...||.|+..+....
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~-~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~----- 64 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTL-PCNHT-------------------LCKPCFQSTVEKASLCCPFCRRRVSSWT----- 64 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEEC-TTSCE-------------------ECHHHHCCCCCTTTSBCTTTCCBCHHHH-----
T ss_pred cCCCCCCCCccCCcccCceeEc-CCCCH-------------------HhHHHHHHHHhHCcCCCCCCCcccCccc-----
Confidence 3456689999999999999976 99999 999999999987 678999998875310
Q ss_pred cccchhcccCCCCchHHHHHHHHHHHHHHHH
Q psy8987 104 KYSYIAFASDDYDNDTRIYEQVLQIVLRIYL 134 (173)
Q Consensus 104 k~~~~a~~s~~y~~d~~~qe~VykLvp~ly~ 134 (173)
+ ....+....+..+++++.+++|+.+.
T Consensus 65 ~----~~~~~~~~~n~~l~~~i~~~~p~~~~ 91 (115)
T 3l11_A 65 R----YHTRRNSLVNVELWTIIQKHYPRECK 91 (115)
T ss_dssp H----HHHHTTCCBCHHHHHHHHHHSHHHHH
T ss_pred c----ccccccchhhHHHHHHHHHHCCHHHH
Confidence 0 00112222345688888888886544
No 16
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.28 E-value=9.7e-13 Score=95.57 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=49.5
Q ss_pred hhhhccCCceeecccchhhhhhccccccC-CccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCC
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECL-HSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQ 97 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~-Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~ 97 (173)
....++.++++|+||.++|.|||++ .|| |+ ||++||.+|+.....||.|+..+...
T Consensus 14 ~~~~~~p~~~~CpI~~~~m~dPV~~-~cG~ht-------------------f~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 14 ETYADACDEFLDPIMSTLMCDPVVL-PSSRVT-------------------VDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCCCSCCTTTBCTTTCSBCSSEEEC-TTTCCE-------------------EEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred hhhhcCcHhcCCcCccccccCCeEC-CCCCeE-------------------ECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 3455778899999999999999975 899 99 99999999999888999999888644
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-12 Score=88.86 Aligned_cols=57 Identities=26% Similarity=0.532 Sum_probs=48.2
Q ss_pred hhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC--CCCCcccccccCC
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS--RYCPICDVQLNRQ 97 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s--~~CP~C~~~l~~~ 97 (173)
..++++.+.+.|+||.+.|.+|+.+..|+|+ ||+.||.+|++.+ ..||.|+..+...
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-------------------fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNS-------------------YCDECIRTALLESDEHTCPTCHQNDVSP 65 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSCCE-------------------ECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCCCH-------------------HHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence 3456788899999999999999985339999 9999999999865 7899999865443
No 18
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=6.2e-13 Score=96.95 Aligned_cols=61 Identities=23% Similarity=0.505 Sum_probs=51.5
Q ss_pred hhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCCCc
Q psy8987 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDPF 100 (173)
Q Consensus 21 ~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~p~ 100 (173)
...++.+.+++.|+||.++|.+|+++..|||+ ||+.||.+|+. ..||.|+..+...+..
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~-------------------fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~ 71 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHI-------------------FCSNCVSDCIG--TGCPVCYTPAWIQDLK 71 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCC-------------------BCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCCCCCH-------------------HHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence 45677888999999999999999976699999 99999999998 7899999988654433
Q ss_pred cc
Q psy8987 101 LS 102 (173)
Q Consensus 101 ~s 102 (173)
.|
T Consensus 72 ~n 73 (117)
T 1jm7_B 72 IN 73 (117)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 19
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.23 E-value=7.6e-13 Score=99.14 Aligned_cols=50 Identities=36% Similarity=0.965 Sum_probs=45.2
Q ss_pred cCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 27 VNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 27 vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
+.+++.|+||.+.|.+|++ +.|||+ ||..||.+|+..+..||.|+..+..
T Consensus 50 ~~~~~~C~iC~~~~~~~~~-~~CgH~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVT-LNCAHS-------------------FCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEE-ETTSCE-------------------EEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccccCCCcccCcccCCceE-CCCCCC-------------------ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4567899999999999986 599999 9999999999999999999988853
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.8e-12 Score=83.53 Aligned_cols=55 Identities=22% Similarity=0.676 Sum_probs=48.1
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhc---CCCCCCcccccccCC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIK---TSRYCPICDVQLNRQ 97 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~---~s~~CP~C~~~l~~~ 97 (173)
.++++.+.+.|+||.+.+.+|+.+ .|||+ ||..||.+|++ ....||.|+..+...
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~~~~~-~CgH~-------------------fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 13 FVNKLQEEVICPICLDILQKPVTI-DCGHN-------------------FCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCCCCCBCTTTCSBCSSEEEC-TTCCE-------------------EEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred HHHhCccCCEeccCCcccCCeEEc-CCCCh-------------------hhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 456788899999999999999875 99999 99999999997 356899999988754
No 21
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=9.9e-12 Score=88.10 Aligned_cols=64 Identities=25% Similarity=0.633 Sum_probs=52.5
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC---CCCCcccccccCCCC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS---RYCPICDVQLNRQDP 99 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s---~~CP~C~~~l~~~~p 99 (173)
.++.+.+.+.|+||.+.+.+|+. +.|||+ ||+.||.+|+..+ ..||.|+..+...+.
T Consensus 14 ~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~-------------------fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 14 VINAMQKILECPICLELIKEPVS-TKCDHI-------------------FCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HHHHHHHHTSCSSSCCCCSSCCB-CTTSCC-------------------CCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred HHHhccCCCCCcccChhhcCeEE-CCCCCH-------------------HHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 34567778999999999999987 599999 9999999999875 489999998886655
Q ss_pred ccccccc
Q psy8987 100 FLSLKYS 106 (173)
Q Consensus 100 ~~slk~~ 106 (173)
..+..++
T Consensus 74 ~~~~~l~ 80 (112)
T 1jm7_A 74 QESTRFS 80 (112)
T ss_dssp BCCCSSS
T ss_pred CccHHHH
Confidence 5454444
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8.1e-12 Score=81.32 Aligned_cols=54 Identities=24% Similarity=0.586 Sum_probs=46.8
Q ss_pred hhccCCceeecccchhhhhhc------cccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 24 VRDVNPHLLCVLCRGYFVEAT------SIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 24 v~~vn~~l~C~iC~~~f~~p~------si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
...+.+...|+||.+.+.+|. .++.|+|. ||..||.+|++.+..||+|+..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-------------------FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-------------------EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCCh-------------------hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 345678899999999999983 35699999 9999999999999999999988753
No 23
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=80.75 Aligned_cols=49 Identities=24% Similarity=0.706 Sum_probs=43.6
Q ss_pred hhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhc---CCCCCCcc
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIK---TSRYCPIC 90 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~---~s~~CP~C 90 (173)
..++.+.+++.|+||.+.|.+|+.+ .|||+ ||+.||.+|++ ....||+|
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~-------------------fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTI-DCGHN-------------------FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEEC-TTSSE-------------------ECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEe-CCCCc-------------------chHHHHHHHHHcCCCCCcCcCC
Confidence 4556788999999999999999875 99999 99999999998 45789998
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.15 E-value=1.6e-11 Score=80.77 Aligned_cols=53 Identities=25% Similarity=0.641 Sum_probs=46.4
Q ss_pred cCCceeecccchhhhhhc------cccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCC
Q psy8987 27 VNPHLLCVLCRGYFVEAT------SIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQD 98 (173)
Q Consensus 27 vn~~l~C~iC~~~f~~p~------si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~ 98 (173)
..+.+.|+||.+.+.+|+ .++.|||. ||..||.+|++.+..||.|+..+...+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-------------------FCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-------------------EEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCCh-------------------HhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 356789999999999983 45699999 999999999999999999999887554
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.15 E-value=4.3e-12 Score=100.46 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=45.2
Q ss_pred ccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC-CCCCcccccccCC
Q psy8987 26 DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS-RYCPICDVQLNRQ 97 (173)
Q Consensus 26 ~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s-~~CP~C~~~l~~~ 97 (173)
++.+++.|+||.++|.|||++ .|||+ ||++||.+|+..+ ..||.|+.++...
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~~-~~gh~-------------------f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCIT-PSGIT-------------------YDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEEC-SSCCE-------------------EETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred CCCcccCCcCcCCHhcCCeEC-CCCCE-------------------ECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 566799999999999999974 89999 9999999999874 4599999888643
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.15 E-value=7.9e-12 Score=96.20 Aligned_cols=74 Identities=20% Similarity=0.538 Sum_probs=57.6
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCC-CCCcccccccCCCCcc
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSR-YCPICDVQLNRQDPFL 101 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~-~CP~C~~~l~~~~p~~ 101 (173)
.++++.+.+.|+||.+.|.+|++ +.|||+ ||+.||.+|+.... .||+|+..+....
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~--- 127 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVT-TECFHN-------------------VCKDCLQRSFKAQVFSCPACRHDLGQNY--- 127 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEE-CTTSCE-------------------EEHHHHHHHHHTTCCBCTTTCCBCCTTC---
T ss_pred HHHhCccCCEeecCChhhcCCEE-cCCCCc-------------------hhHHHHHHHHHhCCCcCCCCCccCCCCC---
Confidence 45567788999999999999997 599999 99999999999764 8999999887441
Q ss_pred cccccchhcccCCCCchHHHHHHHHHHHHH
Q psy8987 102 SLKYSYIAFASDDYDNDTRIYEQVLQIVLR 131 (173)
Q Consensus 102 slk~~~~a~~s~~y~~d~~~qe~VykLvp~ 131 (173)
.+..+ ..+++++.+++|+
T Consensus 128 ~l~~n------------~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 128 IMIPN------------EILQTLLDLFFPG 145 (150)
T ss_dssp CCCBC------------HHHHHHHHHHSTT
T ss_pred CCCCC------------HHHHHHHHHHhhH
Confidence 22222 4566667666653
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.8e-11 Score=79.48 Aligned_cols=52 Identities=21% Similarity=0.558 Sum_probs=43.6
Q ss_pred Cceeecccch-hhhhhcc---ccccCCccccccccchhhhhccccccchHHhHHHhhcC-CCCCCcccccccCCCC
Q psy8987 29 PHLLCVLCRG-YFVEATS---IVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-SRYCPICDVQLNRQDP 99 (173)
Q Consensus 29 ~~l~C~iC~~-~f~~p~s---i~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-s~~CP~C~~~l~~~~p 99 (173)
+++.|+||.+ ++.+|+. ++.|||+ ||++||.+|+.. +..||.|+..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHT-------------------LCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCC-------------------EEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCH-------------------hHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3578999999 9999963 4699999 999999999665 5789999999876543
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.13 E-value=1.7e-11 Score=78.69 Aligned_cols=51 Identities=25% Similarity=0.677 Sum_probs=45.0
Q ss_pred Cceeecccchhhhhhc------cccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCC
Q psy8987 29 PHLLCVLCRGYFVEAT------SIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQD 98 (173)
Q Consensus 29 ~~l~C~iC~~~f~~p~------si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~ 98 (173)
+.+.|+||.+.+.+|. .++.|||. ||..||.+|++.+..||.|+..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHV-------------------FCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCE-------------------EEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCc-------------------hhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 5688999999999983 45699999 999999999999999999999887543
No 29
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.13 E-value=2.1e-11 Score=93.22 Aligned_cols=56 Identities=21% Similarity=0.536 Sum_probs=49.1
Q ss_pred chhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC-CCCCccccccc
Q psy8987 20 DKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS-RYCPICDVQLN 95 (173)
Q Consensus 20 ~~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s-~~CP~C~~~l~ 95 (173)
....+..+.+++.|+||.++|.+|++ +.|||+ ||+.||.+|++.. ..||.|+..+.
T Consensus 21 ~~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~-------------------FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 21 KTLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHR-------------------YCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCE-------------------EEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred hhhhhccCCcCcCCCCCChhhcCcEE-CCCCCc-------------------cCHHHHHHHHhcCCCCCCCCCCccc
Confidence 44556788999999999999999987 599999 9999999999865 48999998764
No 30
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.12 E-value=6.7e-12 Score=91.57 Aligned_cols=55 Identities=27% Similarity=0.561 Sum_probs=48.5
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCC-CCCcccccccCC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSR-YCPICDVQLNRQ 97 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~-~CP~C~~~l~~~ 97 (173)
.+..+.+.+.|+||.+.+.+|+.+ .|||+ ||+.||.+|++.+. .||+|+..+...
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQT-PCGHR-------------------FCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEEC-TTSCE-------------------EEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hccCCCCCCCCCcCChhhcCeEEC-CcCCh-------------------hhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 456788999999999999999874 89999 99999999998764 999999888653
No 31
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=4.8e-12 Score=90.17 Aligned_cols=52 Identities=19% Similarity=0.471 Sum_probs=44.0
Q ss_pred ccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC------CCCCc--cccc-ccC
Q psy8987 26 DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS------RYCPI--CDVQ-LNR 96 (173)
Q Consensus 26 ~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s------~~CP~--C~~~-l~~ 96 (173)
....++.|+||.++|.||+++..|||+ ||+.||.+||... ..||+ |+.. +..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~-------------------f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHT-------------------YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCE-------------------EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCe-------------------ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 456789999999999999986469999 9999999999863 58999 8765 543
No 32
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2e-11 Score=83.23 Aligned_cols=50 Identities=26% Similarity=0.674 Sum_probs=45.8
Q ss_pred ccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 26 DVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 26 ~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
+....+.|+||.+.|.+|+. +.|+|+ ||..||.+|++....||+|+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~CgH~-------------------fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVV-TKCRHY-------------------FCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEE-CTTSCE-------------------EEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred cCCCCCCCcCCCchhcCeeE-ccCCCH-------------------hHHHHHHHHHHCCCcCCCcCcccc
Confidence 45678999999999999986 699999 999999999999999999999886
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.9e-11 Score=75.31 Aligned_cols=48 Identities=29% Similarity=0.819 Sum_probs=41.8
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhc---CCCCCCcc
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIK---TSRYCPIC 90 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~---~s~~CP~C 90 (173)
.++++.+.+.|+||.+.+.+|+. +.|+|+ ||+.||.+|++ ....||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~-------------------fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVI-IECGHN-------------------FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCC-CSSCCC-------------------CCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEe-CCCCCc-------------------cCHHHHHHHHHhcCCCCCCCCC
Confidence 44577889999999999999986 599999 99999999954 46789998
No 34
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.2e-11 Score=81.40 Aligned_cols=56 Identities=25% Similarity=0.598 Sum_probs=48.4
Q ss_pred hhhhccCCceeecccchhhhh----hccccccCCccccccccchhhhhccccccchHHhHHHhhcCC---CCCCcccccc
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVE----ATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS---RYCPICDVQL 94 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~----p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s---~~CP~C~~~l 94 (173)
...+++.+.+.|+||.+.|.+ |+. +.|||+ ||..||.+|++.+ ..||.|+..+
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~-------------------fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 7 GNLDALREVLECPICMESFTEEQLRPKL-LHCGHT-------------------ICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp CSCCCCCSCCBCTTTCCBCCTTSSCEEE-CSSSCE-------------------EEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred cChhhccCCCCCccCCccccccCCCeEE-CCCCCh-------------------hhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 345677889999999999999 875 599999 9999999999876 7899999987
Q ss_pred cCC
Q psy8987 95 NRQ 97 (173)
Q Consensus 95 ~~~ 97 (173)
...
T Consensus 67 ~~~ 69 (88)
T 2ct2_A 67 RIT 69 (88)
T ss_dssp CCS
T ss_pred cch
Confidence 644
No 35
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.07 E-value=5.2e-11 Score=80.22 Aligned_cols=58 Identities=26% Similarity=0.596 Sum_probs=48.4
Q ss_pred hccCCceeecccchhhhhhc--cccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCCCcc
Q psy8987 25 RDVNPHLLCVLCRGYFVEAT--SIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDPFL 101 (173)
Q Consensus 25 ~~vn~~l~C~iC~~~f~~p~--si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~p~~ 101 (173)
........|+||.+.|.++. .++.|+|. ||..||.+|++.+..||+|+..+...+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHL-------------------FHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCE-------------------EETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCe-------------------ecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 35577899999999998764 33589999 999999999999999999999987655433
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.05 E-value=1.9e-11 Score=88.27 Aligned_cols=55 Identities=24% Similarity=0.664 Sum_probs=47.9
Q ss_pred hhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC-CCCCCcccccccCCC
Q psy8987 24 VRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-SRYCPICDVQLNRQD 98 (173)
Q Consensus 24 v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-s~~CP~C~~~l~~~~ 98 (173)
..++.+.+.|+||.+.+.+|+. +.|||+ ||+.||.+|++. ...||.|+..+...+
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~-~~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVE-TSCKHL-------------------FCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEE-CTTSCE-------------------EEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred HHhccCCCCCCCCCcHhcCcEE-cCCCCc-------------------ccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 3456778999999999999997 599999 999999999987 678999999887543
No 37
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.1e-11 Score=78.83 Aligned_cols=57 Identities=25% Similarity=0.716 Sum_probs=48.0
Q ss_pred hhhhccCCceeecccchhhhhhccc--cccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCC
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSI--VECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQ 97 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si--~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~ 97 (173)
..+.+++.+..|+||.+.|.++..+ +.|+|. ||..||.+|++....||.|+..+...
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-------------------f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 7 GKVKELNLHELCAVCLEDFKPRDELGICPCKHA-------------------FHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp SCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEE-------------------EEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred cccccCCCCCCCcCCCcccCCCCcEEEcCCCCE-------------------ecHHHHHHHHHcCCcCCCcCcccccc
Confidence 3455778889999999999876543 389999 99999999999999999999988643
No 38
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=5.1e-11 Score=78.80 Aligned_cols=54 Identities=31% Similarity=0.762 Sum_probs=47.3
Q ss_pred hhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCC
Q psy8987 24 VRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQD 98 (173)
Q Consensus 24 v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~ 98 (173)
++++.+...|+||.+.+.+ + ++.|+|. ||..||.+|++....||.|+..+...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~-~~~CgH~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-L-ILPCAHS-------------------FCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-E-EETTTEE-------------------ECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-c-ccCCCCc-------------------ccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 4467788999999999998 4 5699999 999999999999999999999887543
No 39
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.8e-11 Score=102.00 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=51.9
Q ss_pred cchhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC--CCCCc--ccccc
Q psy8987 19 SDKLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS--RYCPI--CDVQL 94 (173)
Q Consensus 19 ~~~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s--~~CP~--C~~~l 94 (173)
.+.+.+......+.||||.++|.+||+++.|||+ ||++||.+||... ..||+ |+..+
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHs-------------------FcR~cI~~~~~~~~~~~CPvtGCr~~l 230 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCNHV-------------------FDRDGIQNYLQGYTTRDCPQAACSQVV 230 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCE-------------------EEHHHHHHHSTTCSCEECSGGGCSCEE
T ss_pred CccceecCCceeeECcCccCcccCCeeeCCCCCc-------------------ccHHHHHHHHHhCCCCCCCcccccCcC
Confidence 3556677788999999999999999987799999 9999999999864 57999 99877
Q ss_pred cCC
Q psy8987 95 NRQ 97 (173)
Q Consensus 95 ~~~ 97 (173)
...
T Consensus 231 ~~~ 233 (267)
T 3htk_C 231 SMR 233 (267)
T ss_dssp CGG
T ss_pred chh
Confidence 644
No 40
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=8.1e-11 Score=78.63 Aligned_cols=50 Identities=20% Similarity=0.481 Sum_probs=44.9
Q ss_pred cCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 27 VNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 27 vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
..+.+.|+||.+.+.+|+.+ .|+|. ||..||.+|+.....||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-~CgH~-------------------fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL-PCKHV-------------------FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE-TTTEE-------------------EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEc-cCCCH-------------------HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 35678999999999999865 89999 9999999999999999999988764
No 41
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=76.50 Aligned_cols=56 Identities=25% Similarity=0.647 Sum_probs=46.1
Q ss_pred ccCCceeecccchhhhh--hccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCCCc
Q psy8987 26 DVNPHLLCVLCRGYFVE--ATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDPF 100 (173)
Q Consensus 26 ~vn~~l~C~iC~~~f~~--p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~p~ 100 (173)
+......|+||.+.|.+ ++..+.|+|. ||..||.+|++.+..||.|+..+....|.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHL-------------------FHQVCVDQWLITNKKCPICRVDIEAQLPS 67 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCE-------------------EEHHHHHHHHHHCSBCTTTCSBSCSCCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCH-------------------HHHHHHHHHHHcCCCCcCcCccccCcCCC
Confidence 44667899999998863 3455789999 99999999999999999999988765443
No 42
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.00 E-value=3.9e-11 Score=91.73 Aligned_cols=55 Identities=27% Similarity=0.574 Sum_probs=48.6
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC-CCCCcccccccCC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS-RYCPICDVQLNRQ 97 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s-~~CP~C~~~l~~~ 97 (173)
.+..+.+.+.|+||.++|.+|+. +.|||+ ||++||.+|++.+ ..||.|+..+...
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~-~~CgH~-------------------fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQ-TPCGHR-------------------FCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEE-CTTSCE-------------------EEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred hccCCCCCCCCCCCChhhcCcEE-CCCCCH-------------------HHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 55688999999999999999987 599999 9999999999874 4999999888754
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.00 E-value=7e-11 Score=77.51 Aligned_cols=49 Identities=27% Similarity=0.705 Sum_probs=44.1
Q ss_pred CCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 28 NPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
+....|+||.+.+.+|+..+.|+|. ||..||.+|++.+..||.|+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHA-------------------FCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEE-------------------ESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCe-------------------eHHHHHHHHHhCcCcCcCCChhhH
Confidence 3457899999999998767899999 999999999999999999998876
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=2e-10 Score=82.08 Aligned_cols=52 Identities=25% Similarity=0.664 Sum_probs=45.8
Q ss_pred CCceeecccchhhhhhc------cccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCC
Q psy8987 28 NPHLLCVLCRGYFVEAT------SIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQD 98 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~------si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~ 98 (173)
.+.+.|+||.+.|.+|+ .++.|||+ ||..||.+|++.+..||.|+..+...+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-------------------FCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-------------------EEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCCh-------------------hhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 45789999999999992 35699999 999999999999999999999887554
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.98 E-value=1.6e-10 Score=72.96 Aligned_cols=49 Identities=18% Similarity=0.605 Sum_probs=42.0
Q ss_pred cCCceeecccchhhhh---hccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccc
Q psy8987 27 VNPHLLCVLCRGYFVE---ATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQL 94 (173)
Q Consensus 27 vn~~l~C~iC~~~f~~---p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l 94 (173)
+++...|+||.+.|.+ ++.+..|+|. ||..||.+|++.+..||.|+..+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~-------------------f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHG-------------------FHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCE-------------------ECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCc-------------------ccHHHHHHHHHcCCcCcCCCCEe
Confidence 4567889999999987 5544359999 99999999999999999999765
No 46
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.93 E-value=1.5e-10 Score=93.38 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=46.5
Q ss_pred hccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC-CCCCcccccccCC
Q psy8987 25 RDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS-RYCPICDVQLNRQ 97 (173)
Q Consensus 25 ~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s-~~CP~C~~~l~~~ 97 (173)
.++.+++.||||.++|.|||++ .|||+ ||++||.+|+..+ ..||.|+.++...
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~-~~Ght-------------------fer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCIT-PSGIT-------------------YDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEEC-TTSCE-------------------EEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cCCcHhhcccCccccCCCCeEC-CCCCE-------------------ECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4677899999999999999975 99999 9999999999874 4699999888643
No 47
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=3.9e-10 Score=73.31 Aligned_cols=46 Identities=26% Similarity=0.646 Sum_probs=40.1
Q ss_pred CCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 28 NPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
.+.+.|+||.+.|.+|+. +.|||+ ||+.||.+ .+..||.|+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~-l~CgH~-------------------fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKL-LPCLHT-------------------LCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSC-STTSCC-------------------SBTTTCSS---SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEE-cCCCCc-------------------ccHHHHcc---CCCCCCcCCcEeec
Confidence 567899999999999986 589999 99999977 46789999988764
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.86 E-value=5.1e-10 Score=70.46 Aligned_cols=48 Identities=19% Similarity=0.495 Sum_probs=41.3
Q ss_pred Cceeecccchhhhh---hccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 29 PHLLCVLCRGYFVE---ATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 29 ~~l~C~iC~~~f~~---p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
....|+||.+.+.+ ++.++.|+|. ||..||.+|++.+..||.|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-------------------LHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-------------------EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-------------------ccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999876 3456799999 999999999999999999997663
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=6.7e-10 Score=74.62 Aligned_cols=51 Identities=29% Similarity=0.701 Sum_probs=43.9
Q ss_pred cCCceeecccchhhhhh--ccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 27 VNPHLLCVLCRGYFVEA--TSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 27 vn~~l~C~iC~~~f~~p--~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
..+...|+||.+.|.++ +..+.|+|. ||..||.+|++.+..||+|+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~-------------------fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHE-------------------FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEE-------------------EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCH-------------------hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 45678999999999887 344689999 9999999999999999999987763
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.80 E-value=2.4e-09 Score=76.62 Aligned_cols=50 Identities=22% Similarity=0.571 Sum_probs=41.8
Q ss_pred CCceeecccchhhhhhcc-----------------ccccCCccccccccchhhhhccccccchHHhHHHhh-----cCCC
Q psy8987 28 NPHLLCVLCRGYFVEATS-----------------IVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYI-----KTSR 85 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~s-----------------i~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i-----~~s~ 85 (173)
.++..|+||++.|.+|.. ++.|+|. ||..||.+|+ +.+.
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-------------------Fh~~Ci~~wl~~~~~~~~~ 83 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-------------------FHLLCLLAMYCNGNKDGSL 83 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-------------------ECHHHHHHHHHHTCCSSCC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCc-------------------ccHHHHHHHHHcccCCCCC
Confidence 345799999999987641 5789999 9999999999 4577
Q ss_pred CCCcccccccC
Q psy8987 86 YCPICDVQLNR 96 (173)
Q Consensus 86 ~CP~C~~~l~~ 96 (173)
.||+|+..+..
T Consensus 84 ~CP~CR~~~~~ 94 (114)
T 1v87_A 84 QCPSCKTIYGE 94 (114)
T ss_dssp BCTTTCCBSSS
T ss_pred cCCCCCCccCC
Confidence 99999988764
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.78 E-value=2.3e-09 Score=75.30 Aligned_cols=49 Identities=29% Similarity=0.727 Sum_probs=42.4
Q ss_pred cCCceeecccchhhhh---hccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 27 VNPHLLCVLCRGYFVE---ATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 27 vn~~l~C~iC~~~f~~---p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
......|+||.+.|.+ ++ .+.|+|. ||..||.+|++.+..||.|+..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~-~l~C~H~-------------------Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVAT-ELPCHHY-------------------FHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEE-EETTTEE-------------------EEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEE-ecCCCCh-------------------HHHHHHHHHHHcCCcCcCcCccCC
Confidence 4567899999998876 44 4589999 999999999999999999998775
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=1.5e-09 Score=77.54 Aligned_cols=52 Identities=25% Similarity=0.664 Sum_probs=45.6
Q ss_pred CCceeecccchhhhhhc------cccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCC
Q psy8987 28 NPHLLCVLCRGYFVEAT------SIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQD 98 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~------si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~ 98 (173)
.+...|+||.+.|.+|+ ..+.|||. ||..||.+|++.++.||.|+..+...+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-------------------fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-------------------FCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-------------------EEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-------------------hhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 56789999999999982 45699999 999999999999999999999887553
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.2e-09 Score=73.49 Aligned_cols=49 Identities=24% Similarity=0.588 Sum_probs=41.1
Q ss_pred Cceeecccchhhhh--------------hccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccc
Q psy8987 29 PHLLCVLCRGYFVE--------------ATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQL 94 (173)
Q Consensus 29 ~~l~C~iC~~~f~~--------------p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l 94 (173)
+...|+||++.|.+ ++.+..|+|. |+..||.+|++.+..||+|+..+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-------------------FH~~Ci~~Wl~~~~~CP~CR~~~ 74 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-------------------FHNCCMSLWVKQNNRCPLCQQDW 74 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-------------------EEHHHHHHHTTTCCBCTTTCCBC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-------------------cChHHHHHHHHhCCCCCCcCCCc
Confidence 45679999999876 3444569999 99999999999999999999877
Q ss_pred cC
Q psy8987 95 NR 96 (173)
Q Consensus 95 ~~ 96 (173)
..
T Consensus 75 ~~ 76 (81)
T 2ecl_A 75 VV 76 (81)
T ss_dssp CE
T ss_pred ch
Confidence 53
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.75 E-value=5.7e-09 Score=73.19 Aligned_cols=54 Identities=17% Similarity=0.423 Sum_probs=42.2
Q ss_pred hccCCceeecccchhhhh-hccccc--cCCccccccccchhhhhccccccchHHhHHHhhcC-CCCCCcccccccCC
Q psy8987 25 RDVNPHLLCVLCRGYFVE-ATSIVE--CLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-SRYCPICDVQLNRQ 97 (173)
Q Consensus 25 ~~vn~~l~C~iC~~~f~~-p~si~~--C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-s~~CP~C~~~l~~~ 97 (173)
+++.+++.|+||.+.+.. +..+.. |||+ ||+.|+.++++. ...||.|+..+...
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~-------------------fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQ-------------------ICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCC-------------------CCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred cccccCCcCCccCccCccccccccccCCCCC-------------------cCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 356788999999997742 222333 9999 999999999864 57899999988744
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.57 E-value=7.4e-09 Score=70.56 Aligned_cols=53 Identities=23% Similarity=0.540 Sum_probs=44.9
Q ss_pred hhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 21 ~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
...++.+.+++.|+||.+.+.+|+.+ .|||. .||..|+.+| ..||+|+..+..
T Consensus 15 ~~~~~~~~~~~~C~iC~~~~~~~~~~-pCgH~------------------~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 15 EEQLRRLQEEKLCKICMDRNIAIVFV-PCGHL------------------VTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHHHHHHTBCTTTSSSBCCEEEE-TTCCB------------------CCCHHHHTTC----SBCTTTCCBCSE
T ss_pred HHHHhcCccCCCCCCCCCCCCCEEEc-CCCCh------------------hHHHHhhhcC----ccCCCcCcCccC
Confidence 34566778889999999999999864 99998 3899999988 889999988763
No 56
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.54 E-value=1e-08 Score=69.06 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=44.3
Q ss_pred ceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCCCC
Q psy8987 30 HLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQDP 99 (173)
Q Consensus 30 ~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~~p 99 (173)
++.|+||.+.+.||+....+||+ |++.||.+|++.+..||+.+.++...+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-------------------yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-------------------FEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-------------------EEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-------------------EcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 57899999999999865489999 9999999999987789999998875543
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=6.3e-08 Score=65.76 Aligned_cols=53 Identities=25% Similarity=0.542 Sum_probs=44.0
Q ss_pred hhhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 21 KLLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 21 ~~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
...++++.+.+.|+||.+.+.+|+. +.|||. .||..|+.+ ...||+|+..+..
T Consensus 16 ~~~~~~~~~~~~C~IC~~~~~~~~~-~pCgH~------------------~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 16 EEQLRRLQEEKLCKICMDRNIAIVF-VPCGHL------------------VTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHHHHHHSCSSSCSSCCCBCC-SSSCCC------------------CBCHHHHHH----CSBCTTTCCBCCC
T ss_pred HHHHHcCCCCCCCCcCCCCCCCEEE-ecCCCH------------------HHHHHHhhC----CCCCccCCceecC
Confidence 4456677888999999999999986 599998 289999964 3789999998864
No 58
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.44 E-value=8e-08 Score=71.00 Aligned_cols=48 Identities=23% Similarity=0.542 Sum_probs=41.2
Q ss_pred Cceeecccchhhhhh-----------------ccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCccc
Q psy8987 29 PHLLCVLCRGYFVEA-----------------TSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICD 91 (173)
Q Consensus 29 ~~l~C~iC~~~f~~p-----------------~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~ 91 (173)
+...|.||++.|.++ +....|+|. |+..||.+|++.+..||+|+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-------------------FH~~Ci~~Wl~~~~~CP~Cr 96 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-------------------FHFHCISRWLKTRQVCPLDN 96 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-------------------EEHHHHHHHHTTCSBCSSSC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-------------------ECHHHHHHHHHcCCcCcCCC
Confidence 456799999999876 344689999 99999999999999999999
Q ss_pred cccc
Q psy8987 92 VQLN 95 (173)
Q Consensus 92 ~~l~ 95 (173)
..+.
T Consensus 97 ~~~~ 100 (106)
T 3dpl_R 97 REWE 100 (106)
T ss_dssp SBCC
T ss_pred Ccce
Confidence 8653
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.35 E-value=1.3e-07 Score=84.27 Aligned_cols=51 Identities=22% Similarity=0.598 Sum_probs=44.3
Q ss_pred cCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhc-CCCCCCcccccccCC
Q psy8987 27 VNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIK-TSRYCPICDVQLNRQ 97 (173)
Q Consensus 27 vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~-~s~~CP~C~~~l~~~ 97 (173)
......|+||.+.+.+|+. +.|||. ||..||..|.. .+..||.|+..+...
T Consensus 329 ~~~~~~C~ICle~~~~pv~-lpCGH~-------------------FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 329 GSTFQLCKICAENDKDVKI-EPCGHL-------------------MCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp TTSSSBCTTTSSSBCCEEE-ETTCCE-------------------ECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred cCCCCCCCccCcCCCCeEE-eCCCCh-------------------hhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3445899999999999975 599999 99999999998 688999999988643
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=1.6e-07 Score=65.83 Aligned_cols=46 Identities=26% Similarity=0.617 Sum_probs=38.4
Q ss_pred Cceeecccchhhhhhccc--cccCCccccccccchhhhhccccccchHHhHHHhhcC--------CCCCCc--cccc
Q psy8987 29 PHLLCVLCRGYFVEATSI--VECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT--------SRYCPI--CDVQ 93 (173)
Q Consensus 29 ~~l~C~iC~~~f~~p~si--~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~--------s~~CP~--C~~~ 93 (173)
+.+.|+||.+.+.+|.++ ..|+|+ ||+.|+..|+.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-------------------FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-------------------FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-------------------EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-------------------ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467899999999988754 379999 999999999874 247999 9875
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.29 E-value=1.8e-07 Score=62.52 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=42.2
Q ss_pred CCceeecccchhhhhhccc-cccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 28 NPHLLCVLCRGYFVEATSI-VECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~si-~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
+++..|+||.+.+.+++.+ ..|||. .+|..|+.++++.+..||+|+..+.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~------------------~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHL------------------MACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEE------------------EECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCCh------------------hhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4567899999999998742 299999 2699999999999999999998775
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.26 E-value=2.1e-07 Score=61.98 Aligned_cols=49 Identities=27% Similarity=0.543 Sum_probs=41.9
Q ss_pred CCceeecccchhhhhhcccc--ccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 28 NPHLLCVLCRGYFVEATSIV--ECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~si~--~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
+....|+||.+.+.+++ ++ .|||. -+|..|+.++++.+..||+|+.++.
T Consensus 5 ~~~~~C~IC~~~~~~~~-~~~~pCgH~------------------~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGN-IIHGRTGHL------------------VTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEE-EEETTEEEE------------------EECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeE-EEecCCCCH------------------hHHHHHHHHHHHhCCcCCCcCchhh
Confidence 44568999999999986 35 99997 2799999999998899999998775
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.23 E-value=1.5e-07 Score=71.29 Aligned_cols=47 Identities=23% Similarity=0.562 Sum_probs=0.4
Q ss_pred ceeecccchhhhhhc-----------------cccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccc
Q psy8987 30 HLLCVLCRGYFVEAT-----------------SIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDV 92 (173)
Q Consensus 30 ~l~C~iC~~~f~~p~-----------------si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~ 92 (173)
...|+||++.|.++. ....|+|. |+..||.+|++.+..||+|+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-------------------FH~~CI~~Wl~~~~~CP~Cr~ 108 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-------------------FHFHCISRWLKTRQVCPLDNR 108 (117)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-------------------EcHHHHHHHHHcCCcCCCCCC
Confidence 368999999998742 23489999 999999999999999999998
Q ss_pred ccc
Q psy8987 93 QLN 95 (173)
Q Consensus 93 ~l~ 95 (173)
...
T Consensus 109 ~~~ 111 (117)
T 4a0k_B 109 EWE 111 (117)
T ss_dssp ---
T ss_pred eee
Confidence 654
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.13 E-value=3.1e-07 Score=63.87 Aligned_cols=51 Identities=25% Similarity=0.730 Sum_probs=42.6
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
.++.+.+...|+||.+.+.+|+. +.|||. .||..|+.++ ..||.|+..+..
T Consensus 11 ~~~~l~~~~~C~IC~~~~~~~v~-~pCgH~------------------~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 11 KLRKLKEAMLCMVCCEEEINSTF-CPCGHT------------------VCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHHHHHHHTBCTTTSSSBCCEEE-ETTCBC------------------CBCHHHHTTC----SBCTTTCCBCCE
T ss_pred HHHcCCCCCEeEEeCcccCcEEE-ECCCCH------------------HHHHHHHHhc----CcCCCCCchhhC
Confidence 45566778899999999999986 599998 3799999876 389999998764
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.13 E-value=2.7e-07 Score=80.31 Aligned_cols=51 Identities=29% Similarity=0.617 Sum_probs=44.2
Q ss_pred hhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
.++.+.+++.|+||.+.+.+|+.+ .|||.| ||..|+.++ ..||+|+..+..
T Consensus 288 ~~~~l~~~~~C~IC~~~~~~~v~l-pCgH~~------------------fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 288 QLRRLQEERTCKVCMDKEVSVVFI-PCGHLV------------------VCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHHHHHTTCBCTTTSSSBCCEEEE-TTCCEE------------------ECTTTGGGC----SBCTTTCCBCCE
T ss_pred HHHhCcCCCCCCccCCcCCceEEc-CCCChh------------------HhHHHHhcC----CcCCCCCCCccC
Confidence 466778899999999999999875 999983 899999887 789999988763
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=8.3e-06 Score=57.45 Aligned_cols=50 Identities=26% Similarity=0.615 Sum_probs=39.8
Q ss_pred CCceeecccchhhh--hhccccccC-----CccccccccchhhhhccccccchHHhHHHhhcCC--CCCCcccccccCC
Q psy8987 28 NPHLLCVLCRGYFV--EATSIVECL-----HSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS--RYCPICDVQLNRQ 97 (173)
Q Consensus 28 n~~l~C~iC~~~f~--~p~si~~C~-----Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s--~~CP~C~~~l~~~ 97 (173)
.....|.||.+-+. ++. +..|. |. |...||.+|++.+ ..||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~-------------------fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHF-------------------VHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCC-------------------EETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCe-------------------eCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 44578999997663 465 56885 99 9999999999875 5899999988643
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=2.4e-05 Score=55.15 Aligned_cols=50 Identities=20% Similarity=0.586 Sum_probs=40.6
Q ss_pred CceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC--CCCCcccccccCC
Q psy8987 29 PHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS--RYCPICDVQLNRQ 97 (173)
Q Consensus 29 ~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s--~~CP~C~~~l~~~ 97 (173)
....|.||++.+..-..-..|+|. |=..||.+|++++ ..||.|+.....+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~-------------------fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIR-------------------MHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCE-------------------ECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccCCCCch-------------------hhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 346799999998754444479999 9999999999997 8999999776543
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=1.9e-05 Score=53.49 Aligned_cols=46 Identities=26% Similarity=0.720 Sum_probs=38.3
Q ss_pred CCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccC
Q psy8987 28 NPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
.+...|+||.+...+++. +.|+|.+ ||..|+.+ ...||+|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~v~-~pCgH~~------------------~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVL-LPCRHTC------------------LCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEE-TTTTBCC------------------SCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEE-ECCCChh------------------hhHHHHhc----CCCCCCCCcchhc
Confidence 456889999999999875 5999982 89999984 4789999988763
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.89 E-value=0.00035 Score=52.90 Aligned_cols=73 Identities=18% Similarity=0.397 Sum_probs=53.1
Q ss_pred eecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC-CCCCCcccccccCCCCcccccccchhc
Q psy8987 32 LCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-SRYCPICDVQLNRQDPFLSLKYSYIAF 110 (173)
Q Consensus 32 ~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-s~~CP~C~~~l~~~~p~~slk~~~~a~ 110 (173)
.|+.|.--+..=..++.|.|. ||.+|+..|.+. .+.||.|+.++.+-.. ...+.+-.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-------------------FCydCa~~~~~~~~k~Cp~C~~~V~rVe~---~~~~~if~ 60 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-------------------FCYDCAILHEKKGDKMCPGCSDPVQRIEQ---CTRGSLFM 60 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-------------------EEHHHHHHHHHTTCCBCTTTCCBCSEEEE---EEGGGCCC
T ss_pred ecCccCCCeEEEeeecccccc-------------------HHHHHHHHHHhccCCCCcCcCCeeeeeEE---eccCCEEE
Confidence 488888877777788899999 999999999865 6899999998875432 23355432
Q ss_pred cc------CCCCchHHHHHHHH
Q psy8987 111 AS------DDYDNDTRIYEQVL 126 (173)
Q Consensus 111 ~s------~~y~~d~~~qe~Vy 126 (173)
-+ ..|-+...+|+-+.
T Consensus 61 C~~~~~CkrtyLs~rdlqaHI~ 82 (101)
T 3vk6_A 61 CSIVQGCKRTYLSQRDLQAHIN 82 (101)
T ss_dssp CCCCCCCCCCCSSHHHHHHHHH
T ss_pred CCCCCCHHHHhcCHHHHHHHHH
Confidence 22 34666667766654
No 70
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.86 E-value=0.0031 Score=44.09 Aligned_cols=34 Identities=26% Similarity=0.561 Sum_probs=28.0
Q ss_pred Cceeecccch-hhhhhccc-cccCCccccccccchhhhhccccccchHHhHHHhh
Q psy8987 29 PHLLCVLCRG-YFVEATSI-VECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYI 81 (173)
Q Consensus 29 ~~l~C~iC~~-~f~~p~si-~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i 81 (173)
+++.|++|.+ ++.+|++. +.|+|+ ||..|+..+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~-------------------~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVS-------------------YCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEE-------------------ECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChH-------------------HhHHHCHHHh
Confidence 4588999996 58888863 599999 9999999843
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.55 E-value=0.0074 Score=40.24 Aligned_cols=53 Identities=21% Similarity=0.481 Sum_probs=37.0
Q ss_pred CCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC--CCCCCccccccc
Q psy8987 28 NPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT--SRYCPICDVQLN 95 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~--s~~CP~C~~~l~ 95 (173)
.+...|.||.+--.++. +.+|.+. -+...|=.+|+.+|++. +..||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l-~~PC~C~--------------gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNER-FRACGCT--------------GELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCC-CCSCCCS--------------SGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCce-ecCcCCC--------------CchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 35578999987655554 5676543 00112789999999975 578999998764
No 72
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.23 E-value=0.0034 Score=56.56 Aligned_cols=49 Identities=27% Similarity=0.724 Sum_probs=38.8
Q ss_pred CCceeecccchhhhhhccc-------cccCCccccccccchhhhhccccccchHHhHHHhhcCC-----------CCCCc
Q psy8987 28 NPHLLCVLCRGYFVEATSI-------VECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS-----------RYCPI 89 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~si-------~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s-----------~~CP~ 89 (173)
.....|+||..++.+--.+ ..|+|. |-..|+.+|+++. ..||.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-------------------FH~~CL~kWLrs~~~sRqSFnvi~G~CPy 366 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-------------------CHAVCLEEWFKTLMDGKTFLEVSFGQCPF 366 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-------------------BCSGGGHHHHHHHHSSSCTTTCCEEECTT
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCc-------------------cchHHHHHHHHhCCCccccccccCCCCCC
Confidence 4567899999998871111 379999 9999999999752 46999
Q ss_pred cccccc
Q psy8987 90 CDVQLN 95 (173)
Q Consensus 90 C~~~l~ 95 (173)
|+.++.
T Consensus 367 Cr~pIs 372 (381)
T 3k1l_B 367 CKAKLS 372 (381)
T ss_dssp TCCEEE
T ss_pred CCCcCC
Confidence 998775
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=93.99 E-value=0.031 Score=46.11 Aligned_cols=52 Identities=21% Similarity=0.588 Sum_probs=38.8
Q ss_pred CceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCC--CCCCcccccccCCCC
Q psy8987 29 PHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTS--RYCPICDVQLNRQDP 99 (173)
Q Consensus 29 ~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s--~~CP~C~~~l~~~~p 99 (173)
....|.+|.++..-...-..|+|. |=..|+.+|+++. ..||.|+.......|
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~-------------------~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIR-------------------MHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCE-------------------ECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCCcccCccChH-------------------HHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 467899999987754332237777 9999999999875 489999886654433
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=89.47 E-value=0.28 Score=48.48 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=46.0
Q ss_pred hhhccCCceeecccchhhhhhccccccC-CccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCC
Q psy8987 23 LVRDVNPHLLCVLCRGYFVEATSIVECL-HSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQ 97 (173)
Q Consensus 23 ~v~~vn~~l~C~iC~~~f~~p~si~~C~-Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~ 97 (173)
...++-++++|||=.+++.|||.+ +-| ++ +=++.|.+|+.....||.=+.++...
T Consensus 884 ~~~~iP~~F~cPIs~~lM~DPVil-psG~~T-------------------ydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 884 EYGDVPDEFLDPLMYTIMKDPVIL-PASKMN-------------------IDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp HHCCSCGGGBCTTTCSBCSSEEEC-TTTCCE-------------------EEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cccCCcHHhCCcchhhHHhCCeEc-CCCCEE-------------------ECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 356778899999999999999975 555 68 99999999999888899887777643
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.18 E-value=0.22 Score=37.71 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=38.1
Q ss_pred cCCceeecccchhhhhhccccccC-CccccccccchhhhhccccccchHHhHHHhhcCCCCCCcccccccCC
Q psy8987 27 VNPHLLCVLCRGYFVEATSIVECL-HSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLNRQ 97 (173)
Q Consensus 27 vn~~l~C~iC~~~f~~p~si~~C~-Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~~~ 97 (173)
+-.-+.|-.|--..+ .++.|. |- .|..|+..-+..+..||+|+++|-..
T Consensus 25 ~~G~~nCKsCWf~~k---~LV~C~dHY-------------------LCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK---GLVECNNHY-------------------LCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS---SEEECSSCE-------------------EEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccCcccChhhccccC---Ceeeecchh-------------------hHHHHHHHHHhhccCCcccCCcCCcc
Confidence 444567888864443 455665 88 99999999999999999999998643
No 76
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=68.33 E-value=1.3 Score=39.26 Aligned_cols=53 Identities=26% Similarity=0.483 Sum_probs=38.8
Q ss_pred ccCCceeecccchhhhhhccccccCCc--cccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 26 DVNPHLLCVLCRGYFVEATSIVECLHS--CDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 26 ~vn~~l~C~iC~~~f~~p~si~~C~Hs--~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
.+.-.|.||+=..-+..|+....|.|. .|..+|.....+ +..-.||+|++.+.
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~-----------------~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK-----------------KPTWICPVCDKKAA 265 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH-----------------SCCCBCTTTCSBCC
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh-----------------CCCeECCCCCcccC
Confidence 344568999999999999999999998 455555443221 23568999998664
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=66.62 E-value=4.3 Score=30.31 Aligned_cols=26 Identities=23% Similarity=0.708 Sum_probs=20.8
Q ss_pred chHHhHHHhhcC-CCCCCcccccccCC
Q psy8987 72 VCKSCIVKYIKT-SRYCPICDVQLNRQ 97 (173)
Q Consensus 72 fCksCI~k~i~~-s~~CP~C~~~l~~~ 97 (173)
+|+.|..-=.+. +..||.|+....+.
T Consensus 45 vCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 45 ACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp CCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred hhHHHHHHHHhccCccccccCCccccc
Confidence 999998765554 78999999888643
No 78
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=65.13 E-value=1.6 Score=39.02 Aligned_cols=57 Identities=16% Similarity=0.356 Sum_probs=38.5
Q ss_pred hhhhccCCceeecccchhhhhhccccccCCc--cccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECLHS--CDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs--~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
+.+....-.|.||+=...+..|+....|.|. .|..+|..... -...-.||+|+..+.
T Consensus 241 Iv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~-----------------~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 241 LTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQL-----------------QIPTWQCPVCQIDIA 299 (371)
T ss_dssp ---CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHH-----------------HSCCCBCTTTCCBCC
T ss_pred eeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhh-----------------cCCceeCCCCCcccC
Confidence 3344455669999999999999999999998 34444433211 123567999987664
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=64.79 E-value=3.4 Score=30.73 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=34.7
Q ss_pred CCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcC-----CCCCCcc
Q psy8987 28 NPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKT-----SRYCPIC 90 (173)
Q Consensus 28 n~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~-----s~~CP~C 90 (173)
+..|.|.+|++-+-|.- -+.|--. ..|.||--|-..+|+. .-|||.=
T Consensus 13 ~a~l~CtlC~erLEdtH-FVQCPsv---------------~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH-FVQCPSV---------------PSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CCSCCCSSSCSCCSSTT-SEECSSC---------------SSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CCeeEeecchhhhccCc-eeeCCCc---------------cCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 67899999999877643 5677522 3344999999999985 4688853
No 80
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=42.78 E-value=1.5 Score=31.77 Aligned_cols=23 Identities=26% Similarity=0.775 Sum_probs=14.1
Q ss_pred chHHhHHHhhcCCCCCCccccccc
Q psy8987 72 VCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 72 fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
.|..|-..+-... .||.|+.+|.
T Consensus 20 ~C~~C~~~~~~~a-fCPeCgq~Le 42 (81)
T 2jrp_A 20 HCETCAKDFSLQA-LCPDCRQPLQ 42 (81)
T ss_dssp ECTTTCCEEEEEE-ECSSSCSCCC
T ss_pred ECccccccCCCcc-cCcchhhHHH
Confidence 4666655554444 6777776664
No 81
>3ech_C 25-MER fragment of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa}
Probab=38.93 E-value=17 Score=21.17 Aligned_cols=19 Identities=42% Similarity=0.658 Sum_probs=16.8
Q ss_pred chhhHHHhHHhhhhhhhhh
Q psy8987 140 RGTIHQLTRCFVRNVWWFY 158 (173)
Q Consensus 140 rg~~~ql~~~~~~~~~~~~ 158 (173)
||--.||.|+-.||.|-.|
T Consensus 2 r~~te~lrr~arrnawdly 20 (25)
T 3ech_C 2 RDYTEQLRRAARRNAWDLY 20 (26)
T ss_dssp CCHHHHHHHHHHHTHHHHH
T ss_pred CcHHHHHHHHHHHhHHHHH
Confidence 6778999999999999766
No 82
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=31.27 E-value=11 Score=23.02 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=13.5
Q ss_pred ceeecccchhhhhhccc
Q psy8987 30 HLLCVLCRGYFVEATSI 46 (173)
Q Consensus 30 ~l~C~iC~~~f~~p~si 46 (173)
-.+||+|+.-|..|-.+
T Consensus 5 GFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 5 GFICPQCMKSLGSADEL 21 (34)
T ss_dssp EEECTTTCCEESSHHHH
T ss_pred ccCCcHHHHHcCCHHHH
Confidence 48999999988877543
No 83
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=29.85 E-value=3.3 Score=31.34 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=28.7
Q ss_pred hhhhccCCceeecccchhhhhhccccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCccccccc
Q psy8987 22 LLVRDVNPHLLCVLCRGYFVEATSIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPICDVQLN 95 (173)
Q Consensus 22 ~~v~~vn~~l~C~iC~~~f~~p~si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C~~~l~ 95 (173)
+..+..+=...||.|...+. +. -++. .|..|-..| +....||.|+.+|.
T Consensus 24 ~~~~~~~M~~~CP~Cq~eL~-~~----g~~~-------------------hC~~C~~~f-~~~a~CPdC~q~Le 72 (101)
T 2jne_A 24 LVPRGSHMELHCPQCQHVLD-QD----NGHA-------------------RCRSCGEFI-EMKALCPDCHQPLQ 72 (101)
T ss_dssp -------CCCBCSSSCSBEE-EE----TTEE-------------------EETTTCCEE-EEEEECTTTCSBCE
T ss_pred cccCcccccccCccCCCcce-ec----CCEE-------------------ECccccchh-hccccCcchhhHHH
Confidence 33444445599999997654 22 2333 688886543 33567999998775
No 84
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=29.85 E-value=33 Score=23.06 Aligned_cols=42 Identities=24% Similarity=0.567 Sum_probs=30.5
Q ss_pred ceeecccchhhhhhc--cccccCCccccccccchhhhhccccccchHHhHHHhhcCCCCCCcc
Q psy8987 30 HLLCVLCRGYFVEAT--SIVECLHSCDFVSYFSHFCKLLFGFVSVCKSCIVKYIKTSRYCPIC 90 (173)
Q Consensus 30 ~l~C~iC~~~f~~p~--si~~C~Hs~~~~~~~~~~~~~~~~~~~fCksCI~k~i~~s~~CP~C 90 (173)
...|..|...|.+.. .-..|.+. ||..|=+---.+-..||.|
T Consensus 15 ~~~C~~C~~~~~~~~~y~C~~C~~~-------------------FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 15 ERFCYGCQGELKDQHVYVCAVCQNV-------------------FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CCEETTTTEECTTSEEECCTTTTCC-------------------BCHHHHHTTTTTSCSSSTT
T ss_pred CCcccccCcccCCCccEECCccCcC-------------------cccchhHHHHhhccCCcCC
Confidence 456999999886543 13467777 9999976555556789988
No 85
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=28.51 E-value=44 Score=26.25 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhchhhHHHhHHhhhhhhhhhhhh
Q psy8987 123 EQVLQIVLRIYLRKNVLRGTIHQLTRCFVRNVWWFYISI 161 (173)
Q Consensus 123 e~VykLvp~ly~re~~~rg~~~ql~~~~~~~~~~~~~~~ 161 (173)
..+++||-+ +.++....++++||..-+|+.|--=.+.|
T Consensus 44 ~~m~~lvi~-~~~~~~s~~~ie~la~KiA~ER~eA~~NI 81 (136)
T 1yku_A 44 EHLLSAFIM-YLKEEISLQEIEITSKKIARERIDAKVNI 81 (136)
T ss_dssp HHHHHHHHH-HHTTSSCGGGGHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHhhccccH
Confidence 368899997 78888899999999999999876555444
No 86
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.33 E-value=83 Score=21.92 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=9.8
Q ss_pred CCCCCccccccc
Q psy8987 84 SRYCPICDVQLN 95 (173)
Q Consensus 84 s~~CP~C~~~l~ 95 (173)
...||+|+..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 457999998876
No 87
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=24.96 E-value=24 Score=26.84 Aligned_cols=14 Identities=14% Similarity=0.852 Sum_probs=11.7
Q ss_pred ccchHHhHHHhhcC
Q psy8987 70 VSVCKSCIVKYIKT 83 (173)
Q Consensus 70 ~~fCksCI~k~i~~ 83 (173)
-.||+.|+.+|...
T Consensus 41 AGFCRNCLskWy~~ 54 (105)
T 2o35_A 41 AGFCRNCLSNWYRE 54 (105)
T ss_dssp HSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34999999999764
No 88
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=24.54 E-value=6.1 Score=29.81 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=16.4
Q ss_pred cchHHhHHHhhcCC--CCCCcccccccC
Q psy8987 71 SVCKSCIVKYIKTS--RYCPICDVQLNR 96 (173)
Q Consensus 71 ~fCksCI~k~i~~s--~~CP~C~~~l~~ 96 (173)
..|..|-..|-... ..||.|+..+.+
T Consensus 133 y~C~~Cg~~~~~~~~~~~Cp~CG~~~~~ 160 (165)
T 2lcq_A 133 YVCIGCGRKFSTLPPGGVCPDCGSKVKL 160 (165)
T ss_dssp EEESSSCCEESSCCGGGBCTTTCCBEEE
T ss_pred EECCCCCCcccCCCCCCcCCCCCCccee
Confidence 35666655554322 379999987654
No 89
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=24.51 E-value=12 Score=25.63 Aligned_cols=29 Identities=21% Similarity=0.522 Sum_probs=19.3
Q ss_pred cccchHHhHHHhhcCCCCCCcccccccCCCC
Q psy8987 69 FVSVCKSCIVKYIKTSRYCPICDVQLNRQDP 99 (173)
Q Consensus 69 ~~~fCksCI~k~i~~s~~CP~C~~~l~~~~p 99 (173)
....|..|-+-.+ +..||.|+......+|
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~~T~~~hP 33 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGEKTVIPKP 33 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCSBCBCCCC
T ss_pred hceeCCCCCCEec--cccCcCCCCcCCCCCC
Confidence 3457888833333 6779999988775554
No 90
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=24.47 E-value=24 Score=26.72 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhchhhHHHhH
Q psy8987 119 TRIYEQVLQIVLRIYLRKNVLRGTIHQLTR 148 (173)
Q Consensus 119 ~~~qe~VykLvp~ly~re~~~rg~~~ql~~ 148 (173)
+..++.||-|=-...+.+-..--|..|+..
T Consensus 65 d~ARE~vYGMpy~eWKa~~Q~eAt~eQ~aa 94 (104)
T 3fyb_A 65 DGAREYVYGMPFAEWKTLYQKPASEAQLAA 94 (104)
T ss_dssp HHHHHHHHSSCHHHHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCHHHHHH
Confidence 467888988755555666667777777764
No 91
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=20.65 E-value=26 Score=18.91 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=5.0
Q ss_pred hhccCCCC
Q psy8987 165 FHRYHPST 172 (173)
Q Consensus 165 ~~~~~~~~ 172 (173)
=|||+|.|
T Consensus 17 ~~RyRPGt 24 (26)
T 2x4w_B 17 PHRYRXXX 24 (26)
T ss_pred cccccccc
Confidence 46777765
No 92
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.58 E-value=46 Score=23.54 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=20.9
Q ss_pred cchHHhHHHhhcCCCCCCcccccccC
Q psy8987 71 SVCKSCIVKYIKTSRYCPICDVQLNR 96 (173)
Q Consensus 71 ~fCksCI~k~i~~s~~CP~C~~~l~~ 96 (173)
.+|+.|-.+-...+..|..|+..+..
T Consensus 56 ~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 56 ILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp EECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred eecHHHHHHHcCCCCccccCCCCcCc
Confidence 38999988877666689999987763
No 93
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=20.15 E-value=43 Score=22.07 Aligned_cols=16 Identities=25% Similarity=0.825 Sum_probs=12.6
Q ss_pred CCCCCcccccccCCCC
Q psy8987 84 SRYCPICDVQLNRQDP 99 (173)
Q Consensus 84 s~~CP~C~~~l~~~~p 99 (173)
.+.||.|++.+.+..-
T Consensus 6 ~k~CP~C~~~Iek~~G 21 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGG 21 (60)
T ss_dssp CCCCTTTCCCCSSCCS
T ss_pred ceECcCCCCeeEeCCC
Confidence 5789999998876553
Done!